Mapping MiXCR clones back to fastq reads #1594
-
Hello, Is there a way to map the MiXCR clones to their specific reads from the input fastq.gz file? Thanks! |
Beta Was this translation helpful? Give feedback.
Replies: 1 comment
-
Hi, yes. Suppose you are using
You will receive a Furthermore, by using:
You will obtain You can also read #1470 |
Beta Was this translation helpful? Give feedback.
Hi, yes.
Suppose you are using
mixcr analyze
command. Then you should add the following parameters:You will receive a
results.alignments.tsv
file withdescrsR1
anddescrsR2
columns. Instead of aresults.clns
file, you'll get aresults.clna
file containing information on both alignments and clones.Furthermore, by using: