transitioning from postanalysis to exportPlots

[Januaryyiyue]

Hello,

I successfully ran the following command for each of my samples, and got one .json file for each sample

mixcr postanalysis individual --default-downsampling count-read-auto --default-weight-function read --metadata /path/to/metadata.tsv --group timepoint /path/to/smaple01_out.clns /path/to/sample01_postanalysis.json --only-productive --drop-outliers

How can I run exportPlot on all of them to get one figure with all samples, instead of having one figure per sample (see below)?

[mizraelson]

Hi, the command should be run for all .clns files at once. This will generate a JSON file for all samples, which can then be used to export plots. See the example here.