Cedar v0.1 released to GitHub

Author: notpace

.github/ISSUE_TEMPLATE.md

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+### Expected Behavior
+
+
+### Actual Behavior
+
+
+### Steps to reproduce the actual behavior

.gitignore

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+# See https://help.github.com/articles/ignoring-files for more about ignoring files.
+#
+# If you find yourself ignoring temporary files generated by your text editor
+# or operating system, you probably want to add a global ignore instead:
+#   git config --global core.excludesfile '~/.gitignore_global'
+
+# Ignore bundler config.
+/.bundle
+
+# Ignore the default SQLite database.
+/db/*.sqlite3
+/db/*.sqlite3-journal
+
+# Ignore all logfiles and tempfiles.
+/log/*.log
+/tmp
+
+# test executions
+public/data/*
+!public/data/.keep
+
+# System Files
+.DS_Store
+*.DS_Store
+Thumbs.db
+
+# Dev/test files
+.byebug_history
+
+# Production Environment Secrets
+.env-prod

.overcommit.yml

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+# Use this file to configure the Overcommit hooks you wish to use. This will
+# extend the default configuration defined in:
+# https://github.com/brigade/overcommit/blob/master/config/default.yml
+#
+# At the topmost level of this YAML file is a key representing type of hook
+# being run (e.g. pre-commit, commit-msg, etc.). Within each type you can
+# customize each hook, such as whether to only run it on certain files (via
+# `include`), whether to only display output if it fails (via `quiet`), etc.
+#
+# For a complete list of hooks, see:
+# https://github.com/brigade/overcommit/tree/master/lib/overcommit/hook
+#
+# For a complete list of options that you can use to customize hooks, see:
+# https://github.com/brigade/overcommit#configuration
+#
+# Uncomment the following lines to make the configuration take effect.
+
+PreCommit:
+  RuboCop:
+    enabled: true
+  TravisLint:
+    enabled: true
+  EsLint:
+    enabled: false
+  ScssLint:
+    enabled: true
+    exclude: ['vendor/assets/stylesheets/**/*']
+  HardTabs:
+    enabled: true
+    exclude: ['vendor/assets/stylesheets/**/*', 'vendor/assets/javascripts/**/*']
+  AuthorName:
+    enabled: false
+CommitMsg:
+  RussianNovel:
+    enabled: true
+  HardTabs:
+    enabled: true
+  TextWidth:
+    enabled: false
+  CapitalizedSubject:
+    enabled: false

.rubocop.yml

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+inherit_from: .rubocop_todo.yml
+AllCops:
+  Exclude:
+    - 'bin/**/*'
+    - 'lib/tasks/cucumber.rake'
+    - 'db/seeds.rb'
+Rails:
+  Enabled: true
+Rails/HasAndBelongsToMany:
+  Enabled: false
+Metrics/LineLength:
+  Max: 150
+Metrics/MethodLength:
+  CountComments: false  # count full line comments?
+  Max: 20
+Metrics/ClassLength:
+  Max: 150
+  Exclude:
+    - 'test/**/*'
+Metrics/AbcSize:
+  # The ABC size is a calculated magnitude, so this number can be a Fixnum or
+  # a Float.
+  Max: 32
+  Exclude:
+    - 'test/**/*'
+# Avoid complex methods.
+Metrics/CyclomaticComplexity:
+  Max: 10
+Style/GuardClause:
+  MinBodyLength: 100
+Style/HashSyntax:
+  UseHashRocketsWithSymbolValues: false

.rubocop_todo.yml

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+# Don't fail because of Rails defaults
+
+# Offense count: 5
+# Configuration parameters: EnforcedStyle, SupportedStyles.
+Style/ClassAndModuleChildren:
+  Exclude:
+    - 'test/test_helper.rb'
+    - 'app/controllers/test_executions/steps_controller.rb'
+    - 'app/helpers/test_executions/steps_helper.rb'
+    - 'test/controllers/test_executions/steps_controller_test.rb'
+    - 'test/helpers/test_executions/steps_helper_test.rb'
+
+# Offense count: 1
+# Configuration parameters: Exclude.
+Metrics/LineLength:
+  Exclude:
+    - 'config/initializers/devise.rb'
+
+# Offense count: 3
+# Configuration parameters: Exclude.
+Style/Documentation:
+  Enabled: false
+  # Exclude:
+  #   - 'app/controllers/application_controller.rb'
+  #   - 'app/helpers/application_helper.rb'
+  #   - 'config/application.rb'
+  #   - 'test/test_helper.rb'
+
+Rails/FindEach:
+  Enabled: false
+
+# Offense count: 1
+Metrics/ParameterLists:
+  Exclude:
+    - 'lib/cypress/patient_zipper.rb'

.travis/mongoid.yml

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+# Mongoid Configuration for Travis CI
+# ===================================
+#
+development:
+  clients:
+    default:
+      database: cedar_development
+      hosts:
+        - localhost:27017
+test:
+  clients:
+    default:
+      database: cedar_test
+      hosts:
+        - <%= ENV['TEST_DB_HOST'] || 'localhost' %>:27017
+
+production:
+  clients:
+    default:
+      database: cedar_production
+      hosts:
+        - localhost:27017

Dockerfile

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+FROM rails:4.2.5
+
+ENV RAILS_ENV production
+ENV RAILS_SERVE_STATIC_FILES 1
+
+WORKDIR /rails/cedar
+
+ADD Gemfile ./Gemfile
+ADD Gemfile.lock ./Gemfile.lock
+
+RUN bundle install --without development test
+
+ADD . ./
+
+RUN chmod 755 ./rails-entrypoint.sh
+
+EXPOSE 3000

Gemfile

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+source 'https://rubygems.org'
+
+# Bundle edge Rails instead: gem 'rails', github: 'rails/rails'
+gem 'rails', '~> 4.2.5.1'
+# Use SCSS for stylesheets
+gem 'sass-rails', '~> 4.0.3'
+# Use Uglifier as compressor for JavaScript assets
+gem 'uglifier', '>= 1.3.0'
+# Use CoffeeScript for .js.coffee assets and views
+gem 'coffee-rails', '~> 4.0.0'
+# See https://github.com/rails/execjs#readme for more supported runtimes
+# gem 'therubyracer',  platforms: :ruby
+
+# Use jquery as the JavaScript library
+gem 'jquery-rails'
+# Turbolinks makes following links in your web application faster.
+# Read more: https://github.com/rails/turbolinks
+gem 'turbolinks'
+# Build JSON APIs with ease. Read more: https://github.com/rails/jbuilder
+gem 'jbuilder', '~> 2.0'
+# bundle exec rake doc:rails generates the API under doc/api.
+gem 'sdoc', '~> 0.4.0', group: :doc
+
+# Spring speeds up development by keeping your application running
+# in the background. Read more: https://github.com/rails/spring
+gem 'spring', group: :development
+
+# Use ActiveModel has_secure_password
+# gem 'bcrypt', '~> 3.1.7'
+
+# Use unicorn as the app server
+# gem 'unicorn'
+
+# Use Capistrano for deployment
+# gem 'capistrano-rails', group: :development
+
+# Use debugger
+# gem 'debugger', group: [:development, :test]
+
+# Cedar Additions
+# Mongo for our database
+gem 'mongoid', '~> 5.0.0'
+# Devise for user configuration
+gem 'devise'
+# Protected attributes to prevent mass assignment of things like admin settings
+# gem 'protected_attributes'
+# Wicked for creating the wizard
+gem 'wicked'
+# State Machine for tracking test statuses
+gem 'aasm'
+# We want non-digest versions of our assets for any font
+gem 'non-stupid-digest-assets'
+# Add some bootstrap
+gem 'bootstrap-sass'
+# For the progress indicator
+gem 'bootstrap-slider-rails'
+# Randomized names and companies for the QRDA files
+gem 'faker'
+# health-data-standards to create QRDA documents
+gem 'health-data-standards', git: 'https://github.com/projectcypress/health-data-standards.git', branch: 'bump_mongoid'
+# Quality Measure Engine to create CQMs
+gem 'quality-measure-engine', git: 'https://github.com/projectcypress/quality-measure-engine.git', branch: 'bump_mongoid'
+# For zipping QRDA documents once they are created
+gem 'rubyzip'
+# Prettier replacements for javascript alerts
+gem 'sweet-alert-confirm'
+
+group :development, :test do
+  # Rubocop for syntax checking and code cleanliness
+  gem 'rubocop'
+  # Call 'byebug' anywhere in the code to stop execution and get a debug console
+  gem 'byebug'
+  # Capybara and selenium for automated testing
+  gem 'capybara'
+  gem 'capybara-accessible'
+  gem 'axe-matchers'
+  gem 'selenium-webdriver', '2.48.0'
+  # Brakeman and bundle-audit for automated testing of security vulnerabilities
+  gem 'brakeman', require: false
+  gem 'bundler-audit'
+  # Travis for continuous integration builds
+  gem 'travis'
+end
+
+group :production do
+  gem 'unicorn-rails'
+end