workspace_python/extract_all.py at master · moflaher/workspace_python · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
from __future__ import division,print_function
import numpy as np
import scipy as sp
from mytools import *
import matplotlib as mpl
import matplotlib.pyplot as plt
import os, sys
np.set_printoptions(precision=8,suppress=True,threshold=sys.maxsize)
import pandas as pd
import matplotlib.dates as dates
import argparse
from collections import OrderedDict


parser = argparse.ArgumentParser()
parser.add_argument("grid", help="name of the grid", type=str)
parser.add_argument("name", help="name of the run", type=str)
parser.add_argument("ncfile", help="specify ncfile", type=str)
parser.add_argument("--station", help="switch to station output instead of fvcom output", default=False,action='store_true')
parser.add_argument("-dist", help="max distance from obs to be allowed", type=float,default=10000)
parser.add_argument("-snr", help="signal to noise ratio value used for constituent cutoff", type=float,default=2.0)
parser.add_argument("-days", help="Min. record length for wlev file to be used", type=float, default=29.0)
args = parser.parse_args()

print("The current commandline arguments being used are")
print(args)


mainline='{} {} {}'.format(args.grid,args.name,args.ncfile)

if args.station:
    mainline='{} --station'.format(mainline)


os.system('python extract_buoy.py {}'.format(mainline))


if args.dist != 10000:
    mainline='{} -dist {}'.format(mainline,args.dist)


os.system('python extract_tg.py {}'.format(mainline))
os.system('python extract_ctd.py {}'.format(mainline))
os.system('python extract_adcp.py {}'.format(mainline))

if args.snr != 2.0:
    mainline='{} -snr {}'.format(mainline,args.snr)
if args.days != 29.0:
    mainline='{} -days {}'.format(mainline,args.days)

os.system('python extract_wlev.py {}'.format(mainline))


if args.station:
    os.system('python plot_buoy.py {} {} --station'.format(args.grid,args.name))
    os.system('python plot_tg.py {} {} --station'.format(args.grid,args.name))
    os.system('python plot_ctd.py {} {} --station'.format(args.grid,args.name))
else:
    os.system('python plot_buoy.py {} {}'.format(args.grid,args.name))
    os.system('python plot_tg.py {} {}'.format(args.grid,args.name))
    os.system('python plot_ctd.py {} {}'.format(args.grid,args.name))