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Merge pull request #36 from mrc-ide/update-readme
Extra README info
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README.md

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[![R build status](https://github.com/mrc-ide/cowflu/workflows/R-CMD-check/badge.svg)](https://github.com/mrc-ide/cowflu/actions/workflows/R-CMD-check.yaml)
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This software package accompanies the manuscript "A mathematical model of H5N1 influenza transmission in US dairy cattle" (Rawson et al., 2025).
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The package provides a flexible interface for building SEIR meta-population models of infectious disease dynamics, which we primarily use for modelling HPAI H5N1 in US dairy cattle, as seen in our associated vignettes.
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The underlying model code can be found at [`inst/dust/cows.cpp`].
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Fitting the model, as seen in our vignettes, can make use of traditional MCMC or particle MCMC methods via the `dust2` and `monty` packages.
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## Installation
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To install `cowflu`:

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