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NEWS.md

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mpoxseir 0.2.13

  • Add likelihood term for % cases by age

mpoxseir 0.2.12

  • Add Bujumbura region

mpoxseir 0.2.9

  • children_ind_raw replaced with is_child, adults_ind_raw replaced with (1 - is_child)
  • vaccination allocation determined based on 3 criteria of eligibility, prioritisation and target met

mpoxseir 0.2.8

  • Age groups are now 0-4, 5-11, 12-14, 15-19, then in 5yr bands to allow for new guidance on vaccines for +/-12yo
  • Add optional synthetic contact matrices from Prem et al. 2021

mpoxseir 0.2.7

  • beta_hcw scaled by total population size

mpoxseir 0.2.6

  • Those aged 12 and above are considered adults (relevant to 12 - 17 & CSWs)

mpoxseir 0.2.5

  • Fixed lag issue affecting some states

mpoxseir 0.2.4

  • Increase population of SWs in Sud Kivu

mpoxseir 0.2.3

  • Export cases by transmission route

mpoxseir 0.2.2

  • Added fitting to cumulative CFR by age group

mpoxseir 0.2.1

  • Export cases and deaths in key populations and vaccine doses by age group / key pop

mpoxseir 0.2.0

  • Package ported from odin-dust-mcstate to odin2-dust2-monty

mpoxseir 0.1.11

  • Parametrised HCWs
  • Added fitting to % cases in HCW / SW
  • Fixed output bug in cases among SW

mpoxseir 0.1.10

  • Added Negative-Binomial likelihood option

mpoxseir 0.1.7

  • Redefined mpoxseir date so that "2023-01-01" corresponds to mpoxseir date 0

mpoxseir 0.1.6

  • Add mpoxseir_date functions

mpoxseir 0.1.4

  • Split SW into CSW and ASW, added HCW

mpoxseir 0.0.1

  • Basic age-structured SEIR in odin.dust, adapted from squire