Don't install R deps #15
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| name: "Copilot Setup Steps" | |
| # Automatically run the setup steps when they are changed to allow for easy validation, and | |
| # allow manual testing through the repository's "Actions" tab | |
| on: | |
| workflow_dispatch: | |
| push: | |
| paths: | |
| - .github/workflows/copilot-setup-steps.yml | |
| pull_request: | |
| paths: | |
| - .github/workflows/copilot-setup-steps.yml | |
| jobs: | |
| # The job MUST be called `copilot-setup-steps` or it will not be picked up by Copilot. | |
| copilot-setup-steps: | |
| runs-on: ubuntu-latest | |
| # Set the permissions to the lowest permissions possible needed for your steps. | |
| # Copilot will be given its own token for its operations. | |
| permissions: | |
| # Need contents: read to clone the repository and TreeTools for debugging support | |
| contents: read | |
| # You can define any steps you want, and they will run before the agent starts. | |
| # If you do not check out your code, Copilot will do this for you. | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: 'release' | |
| # Include custom repository for TreeTools and TreeDistData packages | |
| extra-repositories: https://ms609.github.io/packages/ | |
| - name: Install system dependencies (Linux) | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y texlive-latex-base libglpk-dev texlive-fonts-recommended | |
| - name: Set up R dependencies | |
| if: false | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| ms609/TreeDistData | |
| devtools | |
| testthat | |
| roxygen2 | |
| lintr | |
| needs: | | |
| check | |
| - name: Checkout TreeTools source (for debugging support) | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: ms609/TreeTools | |
| path: TreeTools-source | |
| # This provides access to TreeTools source code for agents to inspect | |
| # when debugging issues in TreeDist that may relate to TreeTools |