muscle3/pyproject.toml at develop · multiscale/muscle3 · GitHub

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[build-system]
requires = ["setuptools>=64"]
build-backend = "setuptools.build_meta"

[project]
name = "muscle3"
dynamic = ["version"]
description = "Version 3 of the MUltiScale Coupling Library and Environment"
readme = "README.rst"
authors = [
  {name = "Lourens Veen", email = "l.veen@esciencecenter.nl"},
  {name = "Maarten Sebregts", email = "msebregts@ignitioncomputing.com"},
  {name = "Iris van der Werf", email = "ivanderwerf@ignitioncomputing.com"},
]
license = "Apache-2.0"
license-files = ["LICENSE", "NOTICE"]
keywords = ["multiscale", "coupling", "MUSCLE"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Operating System :: POSIX :: Linux",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Programming Language :: Python :: 3.14",
]
requires-python = ">=3.9, <4"
dependencies = [
    "click>=7.1,<9",
    "matplotlib>=3,<4",
    "msgpack>=1,<2",
    "psutil>=5.0.0",
    "parsimonious",
    "pytest",
    "typing_extensions~=4.6",
    "numpy>=1.22",
    "ymmsl>=0.17.0,<0.18",         # Also in examples requirements.txt
    # "ymmsl @ git+https://github.com/multiscale/ymmsl-python.git@develop",
    "yatiml>=0.12,<0.13",
]

[project.optional-dependencies]
dev = ["tox"]

[project.urls]
homepage = "https://github.com/multiscale/muscle3"
documentation = "https://muscle3.readthedocs.io/"

[project.scripts]
muscle_manager = "muscle3.muscle_manager:manage_simulation"
muscle3 = "muscle3.muscle3:muscle3"

[project.entry-points."pytest11"]
muscle3 = "libmuscle.pytest"

[tool.setuptools]
include-package-data = true

[tool.setuptools.packages.find]
where = [".", "libmuscle/python"]
include = ["muscle3", "libmuscle", "libmuscle.*"]
namespaces = false  # Prevent setuptools from marking /libmuscle as a namespace package

[tool.setuptools.dynamic]
version = {file = "VERSION"}

[tool.coverage.run]
source = [
    "libmuscle/python/libmuscle",
    "integration_test",
]

[tool.coverage.xml]
output = "cobertura.xml"

[tool.pytest.ini_options]
testpaths = ["libmuscle/python/libmuscle", "integration_test"]
addopts = "--cov --cov-report xml --cov-report term-missing -s --import-mode importlib"
pythonpath = "."
filterwarnings = [
    # raise an error when there are unhandled exceptions in a worker thread
    "error::pytest.PytestUnhandledThreadExceptionWarning",
]

[tool.mypy]
files = ["libmuscle/python/**/*.py", "scripts/*.py", "muscle3/*.py"]
mypy_path = "libmuscle/python"
warn_unused_configs = true
disallow_subclassing_any = true
disallow_untyped_calls = true
disallow_untyped_defs = true
disallow_incomplete_defs = true
check_untyped_defs = true
disallow_untyped_decorators = true
no_implicit_optional = true
warn_redundant_casts = true
warn_unused_ignores = false
warn_return_any = true

[[tool.mypy.overrides]]
# We don't bother with type annotations for tests
module = ["*.test.*"]
ignore_errors = true

[[tool.mypy.overrides]]
module = [
    "msgpack",
    "yaml.*",
]
ignore_missing_imports = true

[tool.ruff]
exclude = [
  "docs",
  ".git",
]
# Same as Black
indent-width = 4
line-length = 88

[tool.ruff.lint]
select = [
  # pycodestyle
  "E",
  # Pyflakes
  "F",
  # pyupgrade
  "UP",
  # flake8-bugbear
  "B",
  # isort
  "I",
  # TODO: enable these at some point?
  # flake8-simplify
  #"SIM",
]