diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/pom.xml b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/pom.xml index 48bf4ab..7494456 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/pom.xml +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/pom.xml @@ -5,7 +5,7 @@ gsrs-module-invitro-pharmacology gov.nih.ncats - 3.2.0-SNAPSHOT + 3.2.5-SNAPSHOT 4.0.0 @@ -103,17 +103,7 @@ 2.3.0 - - - com.oracle.database.jdbc - ojdbc8 - 19.6.0.0 - - - org.postgresql - postgresql - runtime - + com.h2database h2 diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/GsrsSpringInvitroPharmacologyApplication.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/GsrsSpringInvitroPharmacologyApplication.java index e26c6e6..78c3ae8 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/GsrsSpringInvitroPharmacologyApplication.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/GsrsSpringInvitroPharmacologyApplication.java @@ -3,19 +3,10 @@ import gsrs.*; import org.springframework.boot.SpringApplication; -import org.springframework.boot.autoconfigure.*; import org.springframework.boot.autoconfigure.SpringBootApplication; import org.springframework.boot.autoconfigure.domain.EntityScan; -import org.springframework.boot.autoconfigure.jdbc.*; -import org.springframework.boot.context.properties.*; -import org.springframework.context.annotation.*; -import org.springframework.context.annotation.Bean; import org.springframework.data.jpa.repository.config.EnableJpaRepositories; import org.springframework.scheduling.annotation.EnableAsync; -import org.springframework.transaction.annotation.*; -import org.springframework.web.servlet.config.annotation.CorsRegistry; -import org.springframework.web.servlet.config.annotation.WebMvcConfigurer; -import org.springframework.web.servlet.config.annotation.WebMvcConfigurerAdapter; /* June 4, 2021 */ @SpringBootApplication @@ -32,25 +23,11 @@ @EnableGsrsBackup @EnableAsync +// SB 3x is the file needed if so make WebMbv config file like in service + public class GsrsSpringInvitroPharmacologyApplication { public static void main(String[] args) { SpringApplication.run(GsrsSpringInvitroPharmacologyApplication.class, args); } - - @Bean - public WebMvcConfigurer corsConfigurer() { - return new WebMvcConfigurerAdapter() { - @Override - public void addCorsMappings(CorsRegistry registry) { - registry.addMapping("/**"); - /* - .allowedOrigins("http://localhost:4200") - .allowedMethods("GET", "PUT", "POST", "PATCH", "DELETE", "OPTIONS") - .allowedHeaders("origin", "Content-Type", "Authorization", "Accept", "Accept-Language", "X-Authorization", "X-Requested-With", "auth-username", "auth-password", "auth-token", "auth-key", "auth-token") - .allowCredentials(false).maxAge(300); - */ - } - }; - } } diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/InvitroPharmacologyDataSourceConfig.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/InvitroPharmacologyDataSourceConfig.java index eb0bfd8..4b80733 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/InvitroPharmacologyDataSourceConfig.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/InvitroPharmacologyDataSourceConfig.java @@ -4,7 +4,7 @@ import java.util.Map; import java.util.Optional; -import javax.persistence.EntityManagerFactory; +import jakarta.persistence.EntityManagerFactory; import javax.sql.DataSource; import org.springframework.beans.factory.annotation.Autowired; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/autoconfigure/GsrsInvitroPharmacologyAutoConfiguration.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/autoconfigure/GsrsInvitroPharmacologyAutoConfiguration.java index 95ac5c1..eadcd4b 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/autoconfigure/GsrsInvitroPharmacologyAutoConfiguration.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/autoconfigure/GsrsInvitroPharmacologyAutoConfiguration.java @@ -6,7 +6,7 @@ import gsrs.EnableGsrsApi; import gsrs.EnableGsrsJpaEntities; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.autoconfigure.AutoConfiguration; import org.springframework.context.annotation.Import; import org.springframework.context.annotation.Bean; @@ -14,7 +14,7 @@ @EnableGsrsJpaEntities @EnableGsrsApi -@Configuration +@AutoConfiguration @Import({ SubstanceApiService.class }) diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/autoconfigure/SubstancesApiConfiguration.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/autoconfigure/SubstancesApiConfiguration.java index 0662fc6..462566f 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/autoconfigure/SubstancesApiConfiguration.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/autoconfigure/SubstancesApiConfiguration.java @@ -15,7 +15,7 @@ import lombok.extern.slf4j.Slf4j; -import javax.persistence.EntityManagerFactory; +import jakarta.persistence.EntityManagerFactory; import javax.sql.DataSource; @Configuration diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/controllers/InvitroAssayScreeningController.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/controllers/InvitroAssayScreeningController.java index 031cb3b..59f6178 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/controllers/InvitroAssayScreeningController.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/controllers/InvitroAssayScreeningController.java @@ -43,17 +43,12 @@ import lombok.extern.slf4j.Slf4j; -import javax.persistence.EntityManager; -import javax.persistence.PersistenceContext; -import javax.servlet.http.HttpServletRequest; - -import java.io.IOException; -import java.io.OutputStream; +import jakarta.persistence.EntityManager; +import jakarta.persistence.PersistenceContext; import java.security.Principal; import java.util.ArrayList; import java.util.List; import java.util.Map; -import java.util.Optional; import java.util.stream.Stream; import net.minidev.json.JSONObject; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/controllers/InvitroPharmacologyController.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/controllers/InvitroPharmacologyController.java index cef1a91..a62f674 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/controllers/InvitroPharmacologyController.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/controllers/InvitroPharmacologyController.java @@ -45,9 +45,9 @@ import lombok.extern.slf4j.Slf4j; -import javax.persistence.EntityManager; -import javax.persistence.PersistenceContext; -import javax.servlet.http.HttpServletRequest; +import jakarta.persistence.EntityManager; +import jakarta.persistence.PersistenceContext; +import jakarta.servlet.http.HttpServletRequest; import java.io.IOException; import java.io.OutputStream; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/indexers/InvitroPharmacologyIndexValueMaker.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/indexers/InvitroPharmacologyIndexValueMaker.java index d0631a8..3bdba61 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/indexers/InvitroPharmacologyIndexValueMaker.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/indexers/InvitroPharmacologyIndexValueMaker.java @@ -16,9 +16,9 @@ import lombok.extern.slf4j.Slf4j; -import javax.persistence.EntityManager; -import javax.persistence.PersistenceContext; -import javax.persistence.Query; +import jakarta.persistence.EntityManager; +import jakarta.persistence.PersistenceContext; +import jakarta.persistence.Query; import java.util.function.Consumer; import java.util.Optional; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayAnalyte.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayAnalyte.java index d3a426b..f98d1a2 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayAnalyte.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayAnalyte.java @@ -13,7 +13,7 @@ import org.hibernate.annotations.LazyCollection; import org.hibernate.annotations.LazyCollectionOption; -import javax.persistence.*; +import jakarta.persistence.*; import java.util.Set; import java.util.ArrayList; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayInformation.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayInformation.java index 52757a0..8473770 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayInformation.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayInformation.java @@ -14,7 +14,7 @@ import org.hibernate.annotations.LazyCollection; import org.hibernate.annotations.LazyCollectionOption; -import javax.persistence.*; +import jakarta.persistence.*; import java.util.Date; import java.util.ArrayList; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayResult.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayResult.java index b8a14b4..978cf70 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayResult.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayResult.java @@ -14,7 +14,7 @@ import lombok.EqualsAndHashCode; import lombok.ToString; -import javax.persistence.*; +import jakarta.persistence.*; import java.util.ArrayList; import java.util.List; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayResultInformation.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayResultInformation.java index d1af1d2..6af9be5 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayResultInformation.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayResultInformation.java @@ -12,7 +12,7 @@ import org.hibernate.annotations.LazyCollection; import org.hibernate.annotations.LazyCollectionOption; -import javax.persistence.*; +import jakarta.persistence.*; import java.util.ArrayList; import java.util.List; import java.util.Objects; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayScreening.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayScreening.java index 4846745..a9f6d3c 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayScreening.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssayScreening.java @@ -14,7 +14,7 @@ import org.hibernate.annotations.LazyCollection; import org.hibernate.annotations.LazyCollectionOption; -import javax.persistence.*; +import jakarta.persistence.*; import java.util.Date; import java.util.ArrayList; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssaySet.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssaySet.java index 1d6d9c1..1590e91 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssaySet.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroAssaySet.java @@ -14,7 +14,7 @@ import org.hibernate.annotations.LazyCollection; import org.hibernate.annotations.LazyCollectionOption; -import javax.persistence.*; +import jakarta.persistence.*; import java.util.Date; import java.util.Set; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroControl.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroControl.java index 89a7402..e75de5b 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroControl.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroControl.java @@ -13,7 +13,7 @@ import org.hibernate.annotations.LazyCollection; import org.hibernate.annotations.LazyCollectionOption; -import javax.persistence.*; +import jakarta.persistence.*; import java.util.Set; import java.util.ArrayList; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroLaboratory.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroLaboratory.java index d0f1ede..5801fe0 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroLaboratory.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroLaboratory.java @@ -9,7 +9,7 @@ import lombok.Data; import lombok.EqualsAndHashCode; -import javax.persistence.*; +import jakarta.persistence.*; @SingleParent @Data diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroPharmacologyCommanData.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroPharmacologyCommanData.java index e8acdc6..e8b9501 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroPharmacologyCommanData.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroPharmacologyCommanData.java @@ -15,7 +15,7 @@ import org.springframework.data.annotation.CreatedDate; import org.springframework.data.annotation.LastModifiedDate; -import javax.persistence.*; +import jakarta.persistence.*; import java.text.DateFormat; import java.text.SimpleDateFormat; import java.util.Date; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroReference.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroReference.java index 01b8324..5e307a1 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroReference.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroReference.java @@ -13,7 +13,7 @@ import org.hibernate.annotations.LazyCollection; import org.hibernate.annotations.LazyCollectionOption; -import javax.persistence.*; +import jakarta.persistence.*; import java.util.Set; import java.util.ArrayList; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSponsor.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSponsor.java index 7ea59a4..f1e49d8 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSponsor.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSponsor.java @@ -14,7 +14,7 @@ import org.hibernate.annotations.LazyCollection; import org.hibernate.annotations.LazyCollectionOption; -import javax.persistence.*; +import jakarta.persistence.*; import java.util.Date; import java.util.ArrayList; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSponsorReport.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSponsorReport.java index 859e1ae..b95e707 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSponsorReport.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSponsorReport.java @@ -10,7 +10,7 @@ import lombok.Data; import lombok.EqualsAndHashCode; -import javax.persistence.*; +import jakarta.persistence.*; import java.util.ArrayList; import java.util.Date; import java.util.List; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSponsorSubmitter.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSponsorSubmitter.java index 13a91a6..b14d6cc 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSponsorSubmitter.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSponsorSubmitter.java @@ -14,7 +14,7 @@ import org.hibernate.annotations.LazyCollection; import org.hibernate.annotations.LazyCollectionOption; -import javax.persistence.*; +import jakarta.persistence.*; import java.util.Date; import java.util.ArrayList; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSummary.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSummary.java index 89c0db4..5f5ff3b 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSummary.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroSummary.java @@ -14,7 +14,7 @@ import org.hibernate.annotations.LazyCollection; import org.hibernate.annotations.LazyCollectionOption; -import javax.persistence.*; +import jakarta.persistence.*; import java.util.List; import java.util.ArrayList; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroTestAgent.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroTestAgent.java index bfef5c8..c82de35 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroTestAgent.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/models/InvitroTestAgent.java @@ -14,7 +14,7 @@ import org.hibernate.annotations.LazyCollection; import org.hibernate.annotations.LazyCollectionOption; -import javax.persistence.*; +import jakarta.persistence.*; import java.util.ArrayList; import java.util.List; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/services/InvitroAssayScreeningEntityService.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/services/InvitroAssayScreeningEntityService.java index c1cc5b1..7357cea 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/services/InvitroAssayScreeningEntityService.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/services/InvitroAssayScreeningEntityService.java @@ -19,7 +19,7 @@ import lombok.extern.slf4j.Slf4j; -import javax.persistence.EntityManager; +import jakarta.persistence.EntityManager; import java.io.IOException; import java.util.List; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/services/InvitroPharmacologyEntityService.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/services/InvitroPharmacologyEntityService.java index 2f54b52..6078e2b 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/services/InvitroPharmacologyEntityService.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/services/InvitroPharmacologyEntityService.java @@ -20,8 +20,8 @@ import lombok.extern.slf4j.Slf4j; -import javax.persistence.EntityManager; -import javax.persistence.PersistenceContext; +import jakarta.persistence.EntityManager; +import jakarta.persistence.PersistenceContext; import java.io.IOException; import java.util.List; diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/validators/AssayInformationUniqueValidator.java b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/validators/AssayInformationUniqueValidator.java index 27bc5aa..2ced19d 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/validators/AssayInformationUniqueValidator.java +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/java/gov/hhs/gsrs/invitropharmacology/validators/AssayInformationUniqueValidator.java @@ -11,8 +11,8 @@ import org.springframework.beans.factory.annotation.Autowired; -import javax.persistence.EntityManager; -import javax.persistence.PersistenceContext; +import jakarta.persistence.EntityManager; +import jakarta.persistence.PersistenceContext; import java.util.Objects; public class AssayInformationUniqueValidator implements ValidatorPlugin { diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/resources/META-INF/spring.factories b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/resources/META-INF/spring.factories index 79c4551..e69de29 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/resources/META-INF/spring.factories +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/resources/META-INF/spring.factories @@ -1,2 +0,0 @@ -org.springframework.boot.autoconfigure.EnableAutoConfiguration=gov.hhs.gsrs.invitropharmacology.autoconfigure.GsrsInvitroPharmacologyAutoConfiguration,\ -gov.hhs.gsrs.invitropharmacology.autoconfigure.SubstancesApiConfiguration \ No newline at end of file diff --git a/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/resources/META-INF/spring/org.springframework.boot.autoconfigure.AutoConfiguration.imports b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/resources/META-INF/spring/org.springframework.boot.autoconfigure.AutoConfiguration.imports new file mode 100644 index 0000000..0bf1cf5 --- /dev/null +++ b/gsrs-module-invitro-pharmacology-spring-boot-autoconfigure/src/main/resources/META-INF/spring/org.springframework.boot.autoconfigure.AutoConfiguration.imports @@ -0,0 +1,3 @@ +gov.hhs.gsrs.invitropharmacology.autoconfigure.GsrsInvitroPharmacologyAutoConfiguration +gov.hhs.gsrs.invitropharmacology.autoconfigure.SubstancesApiConfiguration + diff --git a/gsrs-module-invitro-pharmacology-spring-boot-starter/pom.xml b/gsrs-module-invitro-pharmacology-spring-boot-starter/pom.xml index c4d4f91..2c30a79 100644 --- a/gsrs-module-invitro-pharmacology-spring-boot-starter/pom.xml +++ b/gsrs-module-invitro-pharmacology-spring-boot-starter/pom.xml @@ -6,7 +6,7 @@ gsrs-module-invitro-pharmacology gov.nih.ncats - 3.2.0-SNAPSHOT + 3.2.5-SNAPSHOT 4.0.0 diff --git a/pom.xml b/pom.xml index 777fbf7..7ba90fb 100644 --- a/pom.xml +++ b/pom.xml @@ -14,13 +14,13 @@ org.springframework.boot spring-boot-starter-parent - 2.7.18 + 3.5.7 gov.nih.ncats gsrs-module-invitro-pharmacology - 3.2.0-SNAPSHOT + 3.2.5-SNAPSHOT GSRS Invitro Pharmacology Module GSRS Invitro Pharmacology Module for Spring Boot @@ -29,15 +29,14 @@ - 1.8 - 2021.0.8 - 4.10.0 - 3.2.0-SNAPSHOT - 3.2.0-SNAPSHOT - 2.17.1 - 2.7.18 + 17 + 2025.008 + 3.2.5-SNAPSHOT + 3.2.5-SNAPSHOT + 2.22.1 + 3.5.7 - 3.2.0-SNAPSHOT + 3.2.5-SNAPSHOT @@ -86,32 +85,4 @@ - - - -