scHumanNet/setup.py at main · netbiolab/scHumanNet · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
from setuptools import setup, find_packages

with open("README.md", "r", encoding="utf-8") as fh:
    long_description = fh.read()

setup(
    name="schumannet",
    version="0.1.0",
    author="Junha Cha",
    author_email="[email protected]",
    description="Construction of cell-type-specific functional gene network, with SCINET and HumanNetv3",
    long_description=long_description,
    long_description_content_type="text/markdown",
    url="https://github.com/netbiolab/scHumanNet",
    packages=find_packages(where="python"),
    package_dir={"": "python"},
    classifiers=[
        "Development Status :: 3 - Alpha",
        "Intended Audience :: Science/Research",
        "License :: OSI Approved :: MIT License",
        "Operating System :: OS Independent",
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
        "Programming Language :: Python :: 3.10",
        "Programming Language :: Python :: 3.11",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
    ],
    python_requires=">=3.8",
    install_requires=[
        "numpy>=1.21.0",
        "pandas>=1.3.0",
        "scipy>=1.7.0",
        "networkx>=2.6.0",
        "scikit-learn>=1.0.0",
        "matplotlib>=3.4.0",
        "seaborn>=0.11.0",
        "tqdm>=4.62.0",
    ],
    extras_require={
        "dev": [
            "pytest>=6.0",
            "pytest-cov>=2.0",
            "black>=21.0",
            "flake8>=3.9",
            "mypy>=0.910",
        ],
    },
    entry_points={
        "console_scripts": [
            "schumannet=schumannet.cli:main",
        ],
    },
)