diff --git a/dockerfiles/cager/Dockerfile b/dockerfiles/cager/Dockerfile
deleted file mode 100644
index caf83da1..00000000
--- a/dockerfiles/cager/Dockerfile
+++ /dev/null
@@ -1,35 +0,0 @@
-# Use the official Bioconductor base image for R 4.5
-FROM bioconductor/bioconductor_docker:devel-R-4.5.1
-
-# Maintainer label
-LABEL maintainer="katalitf@uio.no"
-
-# Set up folder structure
-WORKDIR /opt/software
-
-# Update and install system libraries
-RUN apt-get update && \
-    apt-get install -y \
-    libcurl4-openssl-dev \
-    libssl-dev \
-    libxml2-dev \
-    libfontconfig1-dev \
-    libharfbuzz-dev \
-    libfribidi-dev \
-    libfreetype6-dev \
-    libpng-dev \
-    libtiff5-dev \
-    libjpeg-dev \
-    littler \
-    procps \
-    g++ && \
-    apt-get clean && \
-    rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
-
-# Install R dependencies
-COPY requirements.R /opt/software/requirements.R
-RUN Rscript requirements.R
-
-RUN R -e "sessionInfo()"
-
-CMD ["/bin/bash"]
diff --git a/dockerfiles/cager/requirements.R b/dockerfiles/cager/requirements.R
deleted file mode 100644
index 29a634bc..00000000
--- a/dockerfiles/cager/requirements.R
+++ /dev/null
@@ -1,55 +0,0 @@
-#################################
-## List of R packages required ##
-#################################
-
-## CRAN packages:
-required_packages_cran = c(
-    "optparse",         ## Read in data
-    "rlang",            ## Error handling
-    "tidyr",            ## Data formatting and handling
-    "tidyverse",        ## Data formatting and handling
-    "stringr",          ## Data formatting and handling
-    "dplyr",            ## Data formatting and handling
-    "purrr",            ## Parallel processing
-    "magrittr",         ## Code formatting
-    "viridis",          ## Plotting
-    "gplots",           ## Plotting
-    "ggseqlogo",        ## Plotting
-    "devtools")         ## Install other packages from github
-
-message(
-    "; Installing these R packages from CRAN repository: ",
-    required_packages_cran)
-install.packages(
-    required_packages_cran,
-    repos="https://cran.uib.no/")
-
-install.packages(
-    'BiocManager',
-    repos='https://cloud.r-project.org/')
-
-BiocManager::install("remotes")
-
-remotes::install_version(
-    "ggplot2",
-    version = "3.4.4",
-    repos = "https://cloud.r-project.org/")
-
-Sys.setenv(R_REMOTES_NO_ERRORS_FROM_WARNINGS="true")
-Sys.setenv(R_COMPILE_AND_INSTALL_PACKAGES="never")
-
-BiocManager::install("rtracklayer", ask = FALSE)
-
-## Bioconductor packages:
-required_packages_bioconductor <- c(
-    "BSgenome",
-    "ChIPseeker",
-    "txdbmaker")
-
-message(
-    "; Installing these R Bioconductor packages: ",
-    required_packages_bioconductor)
-BiocManager::install(
-    required_packages_bioconductor)
-
-devtools::install_github("charles-plessy/CAGEr", ref="devel")
diff --git a/dockerfiles/report/Dockerfile b/dockerfiles/report/Dockerfile
deleted file mode 100644
index 52cafeaf..00000000
--- a/dockerfiles/report/Dockerfile
+++ /dev/null
@@ -1,33 +0,0 @@
-# Use the official Bioconductor base image for R 4.5
-FROM bioconductor/bioconductor_docker:devel-R-4.5.1
-
-# Maintainer label
-LABEL maintainer="katalitf@uio.no"
-
-# Set up folder structure
-WORKDIR /opt/software
-
-# Update and install system libraries
-RUN apt-get update && \
-    apt-get install -y \
-    libcurl4-openssl-dev \
-    libssl-dev \
-    libxml2-dev \
-    libfontconfig1-dev \
-    libharfbuzz-dev \
-    libfribidi-dev \
-    libfreetype6-dev \
-    libpng-dev \
-    libtiff5-dev \
-    libjpeg-dev \
-    pandoc \
-    littler \
-    procps \
-    g++ && \
-    apt-get clean && \
-    rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
-
-# Install R dependencies
-COPY requirements.R /opt/software/requirements.R
-RUN Rscript requirements.R
-CMD ["/bin/bash"]
diff --git a/dockerfiles/report/requirements.R b/dockerfiles/report/requirements.R
deleted file mode 100644
index 65d4e439..00000000
--- a/dockerfiles/report/requirements.R
+++ /dev/null
@@ -1,41 +0,0 @@
-#################################
-## List of R packages required ##
-#################################
-
-## CRAN packages:
-required_packages_cran = c(
-    "knitr",
-    "rmarkdown",
-    "ggplot2",
-    "gplots",
-    "ggrepel",
-    "devtools")
-
-message(
-    "; Installing these R packages from CRAN repository: ",
-    required_packages_cran)
-install.packages(
-    required_packages_cran,
-    repos="https://cran.uib.no/")
-
-install.packages(
-    'BiocManager',
-    repos='https://cloud.r-project.org/')
-
-
-BiocManager::install("remotes")
-remotes::install_version(
-    "ggplot2",
-    version = "3.4.4",
-    repos = "https://cloud.r-project.org/")
-
-Sys.setenv(R_REMOTES_NO_ERRORS_FROM_WARNINGS="true")
-Sys.setenv(R_COMPILE_AND_INSTALL_PACKAGES="never")
-
-BiocManager::install(version='devel')
-BiocManager::install("Seqinfo")
-BiocManager::install("SummarizedExperiment")
-BiocManager::install("GenomicAlignments")
-BiocManager::install("GenomicFeatures")
-
-devtools::install_github("charles-plessy/CAGEr", ref="devel")