diff --git a/.nf-core.yml b/.nf-core.yml index 6db7c5ad..63133597 100644 --- a/.nf-core.yml +++ b/.nf-core.yml @@ -1,10 +1,10 @@ lint: files_unchanged: - - lib/NfcoreTemplate.groovy + - lib/NfcoreTemplate.groovy nextflow_config: - - config_defaults: - - params.phix_reference - - params.lambda_reference + - config_defaults: + - params.phix_reference + - params.lambda_reference nf_core_version: 3.1.1 repository_type: pipeline template: diff --git a/README.md b/README.md index b729c542..c5638380 100644 --- a/README.md +++ b/README.md @@ -23,7 +23,6 @@ nf-core/mag workflow overview

- ## Pipeline summary By default, the pipeline currently performs the following: it supports both short and long reads, quality trims the reads and adapters with [fastp](https://github.com/OpenGene/fastp) and [Porechop](https://github.com/rrwick/Porechop), and performs basic QC with [FastQC](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/), and merge multiple sequencing runs.