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[automated] Update json files
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2 files changed

+77
-27
lines changed

2 files changed

+77
-27
lines changed

‎public/components.json

+53-3
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@@ -22567,6 +22567,40 @@
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}
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]
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},
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{
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"single_copy_faa": [
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{
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"meta": {
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"type": "map",
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"description": "Groovy Map containing sample information\ne.g. [ id:'test' ]\n"
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}
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},
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{
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"*-busco/*/run_*/busco_sequences/single_copy_busco_sequences/*.faa": {
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"type": "file",
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"description": "Single copy .faa sequence files",
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"pattern": "*-busco/*/run_*/busco_sequences/single_copy_busco_sequences/*.faa"
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}
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}
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]
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},
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{
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"single_copy_fna": [
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{
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"meta": {
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"type": "map",
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"description": "Groovy Map containing sample information\ne.g. [ id:'test' ]\n"
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}
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},
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{
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"*-busco/*/run_*/busco_sequences/single_copy_busco_sequences/*.fna": {
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"type": "file",
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"description": "Single copy .fna sequence files",
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"pattern": "*-busco/*/run_*/busco_sequences/single_copy_busco_sequences/*.fna"
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}
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}
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]
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},
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{
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"versions": [
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{
@@ -67754,6 +67788,21 @@
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"pattern": "*.dict"
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}
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}
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],
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[
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{
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"meta5": {
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"type": "map",
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"description": "Groovy Map containing reference information\ne.g. [ id:'genome' ]\n"
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}
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},
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{
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"gzi": {
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"type": "file",
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"description": "Genome index file only needed when the genome file was compressed with the BGZF algorithm.",
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"pattern": "*.gzi"
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}
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}
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]
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],
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"output": [
@@ -131150,7 +131199,7 @@
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}
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},
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{
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"results/*": {
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"${prefix}_results/*": {
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"type": "directory",
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"description": "Directory containing PIRATE result files",
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"pattern": "*/*"
@@ -131167,7 +131216,7 @@
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}
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},
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{
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"results/core_alignment.fasta": {
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"${prefix}_results/core_alignment.fasta": {
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"type": "file",
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"description": "Core-genome alignment produced by PIRATE (Optional)",
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"pattern": "*.{fasta}"
@@ -131188,7 +131237,8 @@
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}
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],
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"authors": [
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"@rpetit3"
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"@rpetit3",
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"@zachary-foster"
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],
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"maintainers": [
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"@rpetit3"

‎public/pipelines.json

+24-24
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@@ -566,7 +566,7 @@
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"archived": false,
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"disabled": false,
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"web_commit_signoff_required": false,
@@ -589,7 +589,7 @@
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],
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"visibility": "public",
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"temp_clone_token": "",
@@ -19617,7 +19617,7 @@
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@@ -19633,7 +19633,7 @@
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"temp_clone_token": "",
@@ -19831,7 +19831,7 @@
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"TEMPLATE_branch_protection_enforce_admins": -1,
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"TEMPLATE_restrict_push": true,
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"has_required_topics": true,
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"open_pr_count": 10,
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"open_pr_count": 11,
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"repository_url": "https://github.com/nf-core/mag",
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"contributors": [
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{
@@ -22802,12 +22802,12 @@
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"fork": false,
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"url": "https://api.github.com/repos/nf-core/metatdenovo",
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"created_at": "2021-10-19T18:58:24Z",
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"updated_at": "2025-03-13T09:41:07Z",
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"updated_at": "2025-03-14T15:27:20Z",
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"pushed_at": "2025-03-13T10:08:46Z",
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"homepage": "https://nf-co.re/metatdenovo",
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"size": 107793,
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"language": "Nextflow",
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"has_issues": true,
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"has_projects": true,
@@ -22832,7 +22832,7 @@
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"visibility": "public",
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"allow_squash_merge": false,
@@ -24441,7 +24441,7 @@
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}
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"team_contributors_permission_push": true,
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"team_contributors_permission_admin": false,
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"team_core_permission_push": true,
@@ -27600,7 +27600,7 @@
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@@ -27621,7 +27621,7 @@
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"wts"
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"default_branch": "master",
@@ -27655,7 +27655,7 @@
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"status": "disabled"
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}
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@@ -31923,7 +31923,7 @@
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"disabled": false,
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"license": {
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"key": "mit",
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"name": "MIT License",
@@ -31943,7 +31943,7 @@
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],
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@@ -32036,7 +32036,7 @@
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"license": {
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"name": "MIT License",
@@ -32056,7 +32056,7 @@
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],
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"visibility": "public",
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"forks": 40,
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},
@@ -35660,9 +35660,9 @@
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"created_at": "2018-10-05T13:05:57Z",
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"updated_at": "2025-03-14T12:39:00Z",
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"pushed_at": "2025-03-12T12:25:35Z",
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"pushed_at": "2025-03-14T23:29:39Z",
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"homepage": "https://nf-co.re/rnafusion",
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@@ -35675,7 +35675,7 @@
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@@ -35688,7 +35688,7 @@
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],
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"temp_clone_token": "",
@@ -36432,7 +36432,7 @@
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"has_wiki": false,
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"open_issues_count": 87,
@@ -36444,7 +36444,7 @@
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"rna-seq"
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],
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"default_branch": "master",
@@ -36480,7 +36480,7 @@
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"status": "disabled"
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}
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},
36483-
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