@@ -50,13 +50,13 @@ M Reuter, EC Neto, A Keshavan. 2017.
5050------------------------------------------------------------------------------
5151Getting help
5252------------------------------------------------------------------------------
53- If you have any questions about Mindboggle, please post to
53+ General questions about Mindboggle? Please post to
5454`NeuroStars <https://neurostars.org/tags/mindboggle/ >`_ with the tag
55- "mindboggle". If you have found a bug, big or small, please
55+ "mindboggle". Found a bug, big or small? Please
5656`submit an issue <https://github.com/nipy/mindboggle/issues >`_ on GitHub.
5757
58- To run the mindboggle jupyter notebook tutorial, first install the mindboggle
59- docker container (see below) and enter the bash shell of the container
58+ To run the Mindboggle jupyter notebook tutorial, first install the Mindboggle
59+ Docker container (see below) and enter the bash shell of the container
6060from your $HOST (e.g., /Users/arno)::
6161
6262 docker run --rm -ti -v $HOST:/home/jovyan/work -p 8888:8888 --entrypoint /bin/bash nipy/mindboggle
@@ -90,15 +90,15 @@ over 6GB.*
9090*Note 2: You may need to increase memory allocated by Docker to at least 5GB.
9191For example: By default, Docker for `Mac is set to use 2 GB runtime memory <https://docs.docker.com/docker-for-mac/>`_. *
9292
93- 3. Optionally download sample data. To try out the ``mindboggle `` examples
93+ 3. Recommended: download sample data. To try out the ``mindboggle `` examples
9494below, download and unzip the directory of example input data
9595`mindboggle_input_example.zip <https://osf.io/3xfb8/?action=download&version=1 >`_ (455 MB).
9696For example MRI data to preprocess with FreeSurfer and ANTs software,
9797download and unzip
9898`example_mri_data.zip <https://osf.io/k3m94/?action=download&version=1 >`_ (29 MB).
9999
100- 4. Optionally set environment variables for clarity in the commands below
101- (modify accordingly, except for DOCK)::
100+ 4. Recommended: set environment variables for clarity in the commands below
101+ (modify accordingly, except for DOCK -- careful, this step is tricky! )::
102102
103103 HOST=/Users/binarybottle # path on host to access input/output
104104 DOCK=/home/jovyan/work # path to HOST from Docker container
0 commit comments