Merge pull request #3199 from nipy/rel/1.5.0

REL: 1.5.0

Author: effigies

Diff for: .mailmap

@@ -45,6 +45,8 @@ Colin Buchanan <[email protected]> <[email protected]>
 Daniel Brenner <[email protected]>
 Daniel Clark <[email protected]>
 Daniel Geisler <[email protected]>
+Daniel Geisler <[email protected]> <[email protected]>
+Daniel Geisler <[email protected]> <[email protected]>
 Daniel Ginsburg <[email protected]>
 Daniel McNamee <[email protected]>
 David Ellis <[email protected]> <[email protected]>
@@ -89,6 +91,7 @@ Joerg Stadler <[email protected]> <[email protected]>
 John A. Lee <[email protected]>
 John A. Lee <[email protected]> <[email protected]>
 Joke Durnez <[email protected]>
+Jordi Huguet <[email protected]>
 Josh Warner <[email protected]> <[email protected]>
 Junhao WEN <[email protected]>
 Kai Schlamp <[email protected]>
@@ -117,6 +120,7 @@ Lukas Snoek <[email protected]>
 Marcel Falkiewicz <[email protected]> <[email protected]>
 Martin Perez-Guevara <[email protected]>
 Mathias Goncalves <[email protected]> <[email protected]>
+Mathias Goncalves <[email protected]> <[email protected]>
 Mathieu Dubois <[email protected]> <[email protected]>
 Mathieu Dubois <[email protected]> <[email protected]>
 Matteo Mancini <[email protected]>
@@ -170,6 +174,7 @@ Steven Giavasis <[email protected]>
 Steven Giavasis <[email protected]> <[email protected]>
 Steven Giavasis <[email protected]> <[email protected]>
 Steven Tilley <[email protected]> <[email protected]>
+Sulantha Mathotaarachchi <[email protected]>
 Tristan Glatard <[email protected]> <[email protected]>
 Victor Férat <[email protected]>
 Victor Férat <[email protected]> <[email protected]>

Diff for: .zenodo.json

@@ -76,14 +76,14 @@
       "name": "Dayan, Michael",
       "orcid": "0000-0002-2666-0969"
     },
-    {
-      "name": "Loney, Fred"
-    },
     {
       "affiliation": "Dartmouth College: Hanover, NH, United States",
       "name": "Halchenko, Yaroslav O.",
       "orcid": "0000-0003-3456-2493"
     },
+    {
+      "name": "Loney, Fred"
+    },
     {
       "affiliation": "Florida International University",
       "name": "Salo, Taylor",
@@ -288,6 +288,11 @@
       "name": "Kong, Xiang-Zhen",
       "orcid": "0000-0002-0805-1350"
     },
+    {
+      "affiliation": "Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universit\u00e4t Dresden, Dresden, Germany",
+      "name": "Geisler, Daniel",
+      "orcid": "0000-0003-2076-5329"
+    },
     {
       "name": "Salvatore, John"
     },
@@ -384,6 +389,11 @@
     {
       "name": "Cumba, Chad"
     },
+    {
+      "affiliation": "University College London",
+      "name": "P\u00e9rez-Garc\u00eda, Fernando",
+      "orcid": "0000-0001-9090-3024"
+    },
     {
       "name": "Blair, Ross"
     },
@@ -392,16 +402,6 @@
       "name": "Iqbal, Shariq",
       "orcid": "0000-0003-2766-8425"
     },
-    {
-      "affiliation": "NIMH, Scientific and Statistical Computing Core",
-      "name": "Glen, Daniel",
-      "orcid": "0000-0001-8456-5647"
-    },
-    {
-      "affiliation": "Technische Universit\u00e4t Dresden, Faculty of Medicine, Department of Child and Adolescent Psychiatry",
-      "name": "Geisler, Daniel",
-      "orcid": "0000-0003-2076-5329"
-    },
     {
       "affiliation": "University of Iowa",
       "name": "Welch, David"
@@ -429,11 +429,6 @@
       "name": "Papadopoulos Orfanos, Dimitri",
       "orcid": "0000-0002-1242-8990"
     },
-    {
-      "affiliation": "University College London",
-      "name": "P\u00e9rez-Garc\u00eda, Fernando",
-      "orcid": "0000-0001-9090-3024"
-    },
     {
       "affiliation": "Leibniz Institute for Neurobiology",
       "name": "Stadler, J\u00f6rg",
@@ -618,6 +613,10 @@
       "name": "Gerhard, Stephan",
       "orcid": "0000-0003-4454-6171"
     },
+    {
+      "affiliation": "Enigma Biomedical Group",
+      "name": "Mathotaarachchi, Sulantha"
+    },
     {
       "name": "Saase, Victor"
     },
@@ -635,6 +634,11 @@
       "affiliation": "Vrije Universiteit Amsterdam",
       "name": "Ort, Eduard"
     },
+    {
+      "affiliation": "CNRS, UMS3552 IRMaGe",
+      "name": "Condamine, Eric",
+      "orcid": "0000-0002-9533-3769"
+    },
     {
       "affiliation": "Stanford University",
       "name": "Lerma-Usabiaga, Garikoitz",
@@ -654,6 +658,11 @@
       "name": "Pellman, John",
       "orcid": "0000-0001-6810-4461"
     },
+    {
+      "affiliation": "BarcelonaBeta Brain Research Center",
+      "name": "Huguet, Jordi",
+      "orcid": "0000-0001-8420-4833"
+    },
     {
       "affiliation": "University of Pennsylvania",
       "name": "Junhao WEN",
@@ -684,6 +693,10 @@
       "name": "Andberg, Sami Kristian",
       "orcid": "0000-0002-5650-3964"
     },
+    {
+      "affiliation": "Sagol School of Neuroscience, Tel Aviv University",
+      "name": "Baratz, Zvi"
+    },
     {
       "name": "Matsubara, K"
     },
@@ -719,11 +732,6 @@
     {
       "name": "Shachnev, Dmitry"
     },
-    {
-      "affiliation": "CNRS, UMS3552 IRMaGe",
-      "name": "Condamine, Eric",
-      "orcid": "0000-0002-9533-3769"
-    },
     {
       "name": "Flandin, Guillaume"
     },

Diff for: doc/changelog/1.X.X-changelog.rst

@@ -1,4 +1,4 @@
-1.5.0 (To be determined)
+1.5.0 (June 03, 2020)
 =========================
 
 New feature release in the 1.5.x series.
@@ -8,20 +8,36 @@ In this release, the example scripts have been split out into their own package:
 
 (`Full changelog <https://github.com/nipy/nipype/milestone/1.5.0?closed=1>`__)
 
+  * FIX: volterra_expansion_order documentation error (https://github.com/nipy/nipype/pull/3213)
+  * FIX: BET incorrect output paths (https://github.com/nipy/nipype/pull/3214)
+  * FIX: Terminal output in ``report.rst`` spreads one line per character (https://github.com/nipy/nipype/pull/3220)
+  * FIX: Allow parsing freesurfer 7 version string (https://github.com/nipy/nipype/pull/3216)
+  * FIX: Use PackageInfo to get NiftyReg version (https://github.com/nipy/nipype/pull/3194)
   * FIX: Partial rollback of N4BiasFieldCorrection (https://github.com/nipy/nipype/pull/3188)
   * FIX: ANTs' tools maintenance overhaul (https://github.com/nipy/nipype/pull/3180)
   * FIX: load_resultfile crashes if open resultsfile from crashed job (https://github.com/nipy/nipype/pull/3182)
   * FIX: FSL model.py make multiple F-tests (https://github.com/nipy/nipype/pull/3166)
+  * ENH: Restore ants.legacy interfaces (https://github.com/nipy/nipype/pull/3222)
+  * ENH: Add ``"TruncateImageIntensity"`` operation to ``ants.utils.Image.Math`` (https://github.com/nipy/nipype/pull/3210)
+  * ENH: SPM NewSegment multi-channel segmentation (https://github.com/nipy/nipype/pull/3162)
+  * ENH: Add reverse-ordered transform lists to ants.Registration outputs (https://github.com/nipy/nipype/pull/3192)
   * ENH: Improve workflow connect performance (https://github.com/nipy/nipype/pull/3184)
   * ENH: Add ``ConstrainedSphericalDeconvolution`` interface to replace ``EstimateFOD`` for MRtrix3's ``dwi2fod`` (https://github.com/nipy/nipype/pull/3176)
   * ENH: Detect values for EulerNumber interface (https://github.com/nipy/nipype/pull/3173)
   * ENH: Remove examples from repository (https://github.com/nipy/nipype/pull/3172)
+  * TEST: Clean up tests (https://github.com/nipy/nipype/pull/3195)
+  * TEST: Mock terminal output before testing changing default value (https://github.com/nipy/nipype/pull/3193)
+  * REF: make invocations of python and pytest consistent with the one used/desired python (https://github.com/nipy/nipype/pull/3208)
   * REF: Prefer math.gcd to hand-rolled Euclid's algorithm (https://github.com/nipy/nipype/pull/3177)
   * REF: Removed all uses of numpy_mmap (https://github.com/nipy/nipype/pull/3121)
+  * DOC: Sphinx 3 compatibility (https://github.com/nipy/nipype/pull/3206)
   * DOC: Update links, typos in contributing guide (https://github.com/nipy/nipype/pull/3160)
   * DOC: Update SelectFiles docstring to match actual behavior (https://github.com/nipy/nipype/pull/3041)
   * DOC: Updated .zenodo.json file (https://github.com/nipy/nipype/pull/3167)
   * DOC: Update .zenodo.json (https://github.com/nipy/nipype/pull/3165)
+  * MNT: Permit recent nilearns (https://github.com/nipy/nipype/pull/2841)
+  * MNT: Test Python 3.8 (https://github.com/nipy/nipype/pull/3154)
+  * MNT: Restore ReadTheDocs (https://github.com/nipy/nipype/pull/3207)
   * MNT: Update Zenodo ordering based on commit count (https://github.com/nipy/nipype/pull/3169)
 
 1.4.2 (February 14, 2020)

Diff for: nipype/info.py

@@ -5,7 +5,7 @@
 
 # nipype version information
 # Remove -dev for release
-__version__ = "1.5.0-rc1.post-dev"
+__version__ = "1.5.0"
 
 
 def get_nipype_gitversion():