diff --git a/.github/workflows/ci-cd.yml b/.github/workflows/ci-cd.yml index 6e7463b..5f4ad91 100644 --- a/.github/workflows/ci-cd.yml +++ b/.github/workflows/ci-cd.yml @@ -12,14 +12,14 @@ jobs: runs-on: ubuntu-latest strategy: - # If either the tests for 3.8 or 3.10 fail all workflows + # If either the tests for 3.8 or 3.11 fail all workflows # are terminated to safe computing resources. fail-fast: true # To safe runtime least and latest version supported are # chosen. We go for 3.8 due to some dependencies. For more # info see the pyproject.toml matrix: - python-version: ["3.8", "3.10"] + python-version: ["3.8", "3.11"] steps: - uses: actions/checkout@v3 @@ -79,10 +79,10 @@ jobs: echo "version=${VERSION}" >> $GITHUB_OUTPUT # For publishing any version will do - - name: Set up Python 3.10 + - name: Set up Python 3.11 uses: actions/setup-python@v4 with: - python-version: "3.10" + python-version: "3.11" - name: Install Task run: | @@ -127,10 +127,10 @@ jobs: steps: # Install python (be aware NO checkout action) - - name: Set up Python 3.10 + - name: Set up Python 3.11 uses: actions/setup-python@v4 with: - python-version: "3.10" + python-version: "3.11" # Check if it installs without errors - name: Install package @@ -158,10 +158,10 @@ jobs: with: fetch-depth: 0 - - name: Set up Python 3.10 + - name: Set up Python 3.11 uses: actions/setup-python@v4 with: - python-version: "3.10" + python-version: "3.11" - name: Install Task run: | diff --git a/README.rst b/README.rst index 0e80992..6ee5333 100644 --- a/README.rst +++ b/README.rst @@ -4,10 +4,10 @@ |test-main| |test-dev| -.. |test-main| image:: https://github.com/open-lasso-python/lasso-python/actions/workflows/test-runner.yml/badge.svg?branch=main +.. |test-main| image:: https://github.com/open-lasso-python/lasso-python/actions/workflows/ci-cd.yml/badge.svg?branch=main :target: https://github.com/open-lasso-python/lasso-python/actions/workflows/test-runner.yml -.. |test-dev| image:: https://github.com/open-lasso-python/lasso-python/actions/workflows/test-runner.yml/badge.svg?branch=dev +.. |test-dev| image:: https://github.com/open-lasso-python/lasso-python/actions/workflows/ci-cd.yml/badge.svg?branch=dev :target: https://github.com/open-lasso-python/lasso-python/actions/workflows/test-runner.yml This python library is designed for general purpose usage in the field of diff --git a/lasso/dimred/hashing_sphere.py b/lasso/dimred/hashing_sphere.py index 08744d7..44415cb 100644 --- a/lasso/dimred/hashing_sphere.py +++ b/lasso/dimred/hashing_sphere.py @@ -32,7 +32,7 @@ def _create_sphere_mesh(diameter: np.ndarray) -> typing.Tuple[np.ndarray, np.nda beta bin boundaries """ - assert diameter.dtype == np.float + assert diameter.dtype == np.float32 # partition latitude n_alpha = 145 @@ -143,7 +143,7 @@ def sphere_hashing( assert len(bin_numbers[0] == len(field)) # check data types assert bin_numbers.dtype == np.int - assert bin_counts.dtype == np.float + assert bin_counts.dtype == np.float32 n_rows = bin_counts.shape[0] n_cols = bin_counts.shape[1] diff --git a/lasso/dyna/d3plot.py b/lasso/dyna/d3plot.py index 7a85cee..3ab7f00 100644 --- a/lasso/dyna/d3plot.py +++ b/lasso/dyna/d3plot.py @@ -6620,7 +6620,7 @@ def _write_geom_particle_flags(self, fp: typing.IO[Any], settings: D3plotWriterS # only the first byte to the ascii char code fmt_string = "{0:" + str(settings.wordsize) + "}" for name, _ in nlist_names_typecodes: - name_formatted = fmt_string.format(name).encode("ascii") + name_formatted = fmt_string.format(name).encode("utf-8") for ch in name_formatted: barray = bytearray(settings.wordsize) barray[0] = ch @@ -6836,16 +6836,17 @@ def _write_geom_user_ids(self, fp: typing.IO[Any], settings: D3plotWriterSetting n_bytes_written += fp.write(settings.pack(nsrtd)) if ArrayType.part_ids in self.arrays: - # some lsdyna material pointer - nsrma = info.ptr_material_ids - n_bytes_written += fp.write(settings.pack(nsrma)) + # some lsdyna material pointer - Used by LS-Prepost in labelling materials - # some lsdyna material pointer - nsrmu = info.ptr_material_ids_defined_order - n_bytes_written += fp.write(settings.pack(nsrmu)) + # Unsorted material ID pointer + nsrmu = nsrt + settings.header["nelth"] + # Sorted material ID pointer + nsrma = nsrmu + settings.header["nmmat"] + # Mapping array between sorted and unsorted + nsrmp = nsrma + settings.header["nmmat"] - # some lsdyna material pointer - nsrmp = info.ptr_material_ids_crossref + n_bytes_written += fp.write(settings.pack(nsrma)) + n_bytes_written += fp.write(settings.pack(nsrmu)) n_bytes_written += fp.write(settings.pack(nsrmp)) # "Total number of materials (parts)" @@ -7376,7 +7377,7 @@ def _write_header_part_contact_interface_titles( max_len = 18 * title_wordsize fmt_name = "{0:" + str(max_len) + "}" for pid, title in zip(part_titles_ids, part_titles): - title = title.decode("ascii") + title = title.decode("utf-8") n_bytes_written += fp.write(settings.pack(pid)) formatted_title = fmt_name.format(title[:max_len]) diff --git a/lasso/dyna/test_mapper.py b/lasso/dyna/test_mapper.py index 0f44477..b959254 100644 --- a/lasso/dyna/test_mapper.py +++ b/lasso/dyna/test_mapper.py @@ -387,7 +387,7 @@ def test_others(self): strain1 = np.random.randn(1, 2) strain2 = np.random.randn(1, 2) - history_vars = np.array([[1, 2], [0, 3], [12, 2]], dtype=np.float) + history_vars = np.array([[1, 2], [0, 3], [12, 2]], dtype=np.float32) history_vars1 = np.random.randn(3, 2) history_vars2 = np.random.randn(3, 2) diff --git a/poetry.lock b/poetry.lock index 6382675..c9a7393 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,74 +1,76 @@ -# This file is automatically @generated by Poetry and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. 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support at least 3.8 because of pandas and limit to 3.11 because of -# scipy. +# numpy. python = "^3.8, <3.12" h5py = "^3.7.0" scipy = "^1.9.1" numpy = "^1.23.3" plotly = "^5.10.0" -matplotlib = "^3.6.0" attrs = "^22.1.0" psutil = "^5.9.2" rich = "^12.5.1" diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 4eb07c7..0000000 --- a/requirements.txt +++ /dev/null @@ -1,15 +0,0 @@ -h5py >= 2.8 -scipy -sklearn -numpy -plotly -matplotlib -grpcio -flatbuffers -protobuf -pyarrow -flask -attrs -psutil -rich -pandas diff --git a/setup.py b/setup.py deleted file mode 100644 index dd67934..0000000 --- a/setup.py +++ /dev/null @@ -1,54 +0,0 @@ -#!/usr/bin/env python - -import unittest -from setuptools import find_packages, setup - - -def get_version(): - return "1.5.2post1" - - -def collect_tests(): - """Sets up unit testing""" - test_loader = unittest.TestLoader() - test_suite = test_loader.discover(".", pattern="test_*.py") - return test_suite - - -def 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