pyproject.toml

[build-system]
requires = ["cython",
            "numpy>=1.10",
            "setuptools >= 43.0.0"]
build-backend = "setuptools.build_meta"

[tool.setuptools]
py-modules = ["inspectro"]

[tool.black]
line-length = 127
target-version = ['py39', 'py310']


[project.scripts]
pairtools = "inspectro.utils:utils"

[project]
name = "inspectro"
version = "0.0.1"
license = {file = "LICENSE"}
description = "Spectral decomposition for characterizing long-range interaction profiles in Hi-C maps"
maintainers = [
 {name = "Open2C", email = "open.chromosome.collective@gmail.com"},
]
requires-python = ">=3.9"
dependencies = ["cython",
            "numpy>=1.10",
            "h5py",
            "bioframe>=0.3.3",
            "cooltools>=0.5.2",
            "cooler",
            "pandas",
            "scipy",
            "pybbi",
            "tqdm",
            "scikit-learn",
            "seaborn",
            "matplotlib>=3.4.0",
            "datashader",
            "ipympl",
            "ipdb",
            "jupyterlab",
            "loky",
            "pyarrow",
            "pysam",
            "snakemake"]

readme = "README.md"
classifiers = [
 "Development Status :: 4 - Beta",
 "Operating System :: OS Independent",
 "Programming Language :: Python",
 "Programming Language :: Python :: 3",
 "Programming Language :: Python :: 3.9",
 "Programming Language :: Python :: 3.10",
]

[project.urls]
homepage = "https://github.com/open2c/inspectro"
source = "https://github.com/open2c/inspectro"