chore: Upgrade Python requirements

[edx-requirements-bot]

Python requirements update. Please review the changelogs for the upgraded packages.

Deleted obsolete pull_requests:
#338

[edx-requirements-bot]

List of packages in the PR without any issue.

• asgiref changes from 3.11.1 to 3.12.1
• beautifulsoup4 changes from 4.14.3 to 4.15.0
• certifi changes from 2026.5.20 to 2026.6.17
• cffi changes from 2.0.0 to 2.1.0
• charset-normalizer changes from 3.4.7 to 3.4.9
• click changes from 8.4.1 to 8.4.2
• coverage[toml] changes from 7.14.1 to 7.15.2
• distlib changes from 0.4.1 to 0.4.3
• django changes from 5.2.15 to 5.2.16
• filelock changes from 3.29.1 to 3.30.2
• jaraco-functools changes from 4.5.0 to 4.6.0
• nh3 changes from 0.3.5 to 0.3.6
• pylint changes from 4.0.5 to 4.0.6
• pylint-django changes from 2.7.0 to 2.8.0
• pytest changes from 9.0.3 to 9.1.1
• python-discovery changes from 1.4.0 to 1.4.4
• stevedore changes from 5.8.0 to 5.9.0
• tomlkit changes from 0.15.0 to 0.15.1
• tox changes from 4.55.1 to 4.56.4
• typing-extensions changes from 4.15.0 to 4.16.0
• virtualenv changes from 21.4.2 to 21.6.1

[edx-requirements-bot]

These Packages need manual review..

• [MAJOR] cryptography changes from 48.0.0 to 49.0.0
• [MAJOR] readme-renderer changes from 44.0 to 45.0
• [MAJOR] setuptools changes from 82.0.1 to 83.0.0