rbmiUtils/_pkgdown.yml at main · openpharma/rbmiUtils · GitHub

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url: https://openpharma.github.io/rbmiUtils/

template:
  bootstrap: 5
  opengraph:
    image:
      src: man/figures/logo.png
      alt: "rbmiUtils hex logo - Utilities and Extensions for rbmi"

home:
  title: "rbmiUtils: Utility Functions to Support and Extend rbmi"
  description: >
    Bridges rbmi analysis results into publication-ready regulatory tables
    and forest plots for clinical trial workflows.

navbar:
  structure:
    left: [intro, reference, articles, news]
    right: [search, github, lightswitch]
  components:
    intro:
      text: Get Started
      href: articles/pipeline.html
    articles:
      text: Articles
      menu:
        - text: "End-to-End Pipeline"
        - text: "From rbmi Analysis to Regulatory Tables"
          href: articles/pipeline.html
        - text: "-------"
        - text: "Workflow Guides"
        - text: "Storing and Analyzing Imputed Data"
          href: articles/analyse2.html
        - text: "Data Preparation and Validation"
          href: articles/data-preparation.html
        - text: "Efficient Storage of Imputed Data"
          href: articles/efficient-storage.html
        - text: "Deriving Endpoints from Imputed Data"
          href: articles/deriving-endpoints.html
        - text: "-------"
        - text: "Diagnostics"
        - text: "MI Diagnostics and Describe Helpers"
          href: articles/diagnostics.html

reference:
  - title: "Data Preparation"
    desc: "Validate and prepare data before imputation"
    contents:
      - validate_data
      - prepare_data_ice
      - summarise_missingness
  - title: "Analysis"
    desc: "Apply analysis functions across imputed datasets"
    contents:
      - analyse_mi_data
      - gcomp_responder
      - gcomp_responder_multi
      - gcomp_binary
  - title: "Tidying"
    desc: "Tidy and extract results from pooled objects"
    contents:
      - tidy_pool_obj
      - extract_trt_effects
      - extract_lsm
  - title: "Reporting"
    desc: "Publication-ready tables and plots"
    contents:
      - efficacy_table
      - plot_forest
  - title: "Introspection"
    desc: "Inspect draws, imputations, and MI diagnostics"
    contents:
      - describe_draws
      - describe_imputation
  - title: "Formatting"
    desc: "Format values for publication"
    contents:
      - format_pvalue
      - format_estimate
      - format_results_table
      - format_results
  - title: "Storage"
    desc: "Efficient storage of imputed datasets"
    contents:
      - reduce_imputed_data
      - expand_imputed_data
  - title: "Utilities"
    desc: "Helper functions for imputed data workflows"
    contents:
      - get_imputed_data
      - create_impid
      - combine_results
      - pool_to_ard
  - title: "Print & Summary Methods"
    desc: "S3 methods for inspecting rbmiUtils objects"
    contents:
      - starts_with("print.")
      - starts_with("summary.")
  - title: "Datasets"
    desc: "Example datasets for demonstrations"
    contents:
      - ADEFF
      - ADMI

footer:
  structure:
    left: developed_by
    right: [built_with, community]
  components:
    community: >
      Part of [openpharma](https://openpharma.github.io/)