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adding skeleton of site!
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‎.gitignore

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OLD*
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_site
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_OLD*

‎README.md

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# OpenSchemas Site
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Hi friend! This site will be home of the Open Schemas specifications, and is under development.
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It is deployed using [Jekyll](https://jekyllrb.com/).
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![assets/images/logos/openschemas/logo_hexagon.png](assets/images/logos/openschemas/logo_hexagon.png)
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## Geting Started
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See [installation instructions](https://jekyllrb.com/docs/installation/) for full details of installing Jekyll. Below are a quick set of commands that should hopefully get you going:
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- Install Jekyll and Dependencies: ```gem install jekyll bundler jekyll-redirect-from```
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- Clone the repository: ```git clone https://github.com/BioSchemas/bioschemas.github.io.git```
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- Run the website: ```jekyll serve```

‎_config.yml

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# Welcome to Jekyll!
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#
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# This config file is meant for settings that affect your whole blog, values
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# which you are expected to set up once and rarely need to edit after that.
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# For technical reasons, this file is *NOT* reloaded automatically when you use
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# 'jekyll serve'. If you change this file, please restart the server process.
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# Site settings
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title: OpenSchemas
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email: [email protected]
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description: > # this means to ignore newlines until "baseurl:"
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OpenSchemas relies and extends from schema.org to generate specifications for open science.
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baseurl: "" # the subpath of your site, e.g. /blog
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url: "" # the base hostname & protocol for your site
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logo: assets/images/logos/openschemas/logo_hexagon.png
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# Alias
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github_username: openschemas
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repo: https://github.com/openschemas/openschemas.github.io
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name: OpenSchemas
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twitter: containertools
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# Build settings
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markdown: kramdown
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plugins:
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- jekyll-redirect-from
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- jekyll-sitemap
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# Collections
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collections:
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specifications:
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output: true
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permalink: /:collection/:path/
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devSpecs:
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output: true
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permalink: /:collection/:path/
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types:
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output: true
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permalink: /:collection/:path/
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devTypes:
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output: true
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permalink: /:collection/:path/
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people:
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output: true
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permalink: /:collection/:path/
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groups:
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output: true
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permalink: /:collection/:path/
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useCases:
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output: true
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permalink: /:collection/:path/
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stories:
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output: true

‎_devSpecs/README.md

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‎_devTypes/README.md

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‎_includes/collections_footer.html

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<div class="inner footer_buttons">
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<div class="inner footer_links">
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<a href="#top" id="top_link"><div>Top &#9650;</div></a>
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</div>
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<div class="inner footer_links">
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<a href="/{{page.collection}}/" id="back_groups"><div>&#9668; {{ page.collection | capitalize }}</div></a>
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</div>
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</div>
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<div id="footer_wrap" class="outer">
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<footer class="inner">
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<img class="img_bottom rotation" src="{{ site.baseurl }}{{ site.logo }}" alt="{{ site.name }}">
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<p class="p_bottom">Hugs &amp; bugs: <a href="mailto:{{ site.repo }}/issues">{{ site.name }} Issue Board</a></p>
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<p class="p_bottom">&copy; 2016</p>
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</footer>
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</div>
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<script src="https://ajax.googleapis.com/ajax/libs/jquery/3.3.1/jquery.min.js"></script>
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<script src="https://ajax.googleapis.com/ajax/libs/jqueryui/1.12.1/jquery-ui.min.js"></script>
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<script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.0/umd/popper.min.js" integrity="sha384-cs/chFZiN24E4KMATLdqdvsezGxaGsi4hLGOzlXwp5UZB1LY//20VyM2taTB4QvJ" crossorigin="anonymous"></script>
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<script src="https://stackpath.bootstrapcdn.com/bootstrap/4.1.0/js/bootstrap.min.js" integrity="sha384-uefMccjFJAIv6A+rW+L4AHf99KvxDjWSu1z9VI8SKNVmz4sk7buKt/6v9KI65qnm" crossorigin="anonymous"></script>
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<script src="{{ site.baseurl }}/assets/js/clipboard.min.js"></script>
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<script src="{{ site.baseurl }}/assets/js/scripts.js"></script>

‎_includes/favicon.html

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<link rel="apple-touch-icon" sizes="57x57" href="{{ site.baseurl }}/assets/images/favicon/apple-icon-57x57.png">
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<link rel="apple-touch-icon" sizes="60x60" href="{{ site.baseurl }}/assets/images/favicon/apple-icon-60x60.png">
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<link rel="apple-touch-icon" sizes="72x72" href="{{ site.baseurl }}/assets/images/favicon/apple-icon-72x72.png">
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<link rel="apple-touch-icon" sizes="76x76" href="{{ site.baseurl }}/assets/images/favicon/apple-icon-76x76.png">
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<link rel="apple-touch-icon" sizes="114x114" href="{{ site.baseurl }}/assets/images/favicon/apple-icon-114x114.png">
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<link rel="apple-touch-icon" sizes="120x120" href="{{ site.baseurl }}/assets/images/favicon/apple-icon-120x120.png">
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<link rel="apple-touch-icon" sizes="144x144" href="{{ site.baseurl }}/assets/images/favicon/apple-icon-144x144.png">
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<link rel="apple-touch-icon" sizes="152x152" href="{{ site.baseurl }}/assets/images/favicon/apple-icon-152x152.png">
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<link rel="apple-touch-icon" sizes="180x180" href="{{ site.baseurl }}/assets/images/favicon/apple-icon-180x180.png">
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<link rel="icon" type="image/png" sizes="192x192" href="{{ site.baseurl }}/assets/images/favicon/android-icon-192x192.png">
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<link rel="icon" type="image/png" sizes="32x32" href="{{ site.baseurl }}/assets/images/favicon/favicon-32x32.png">
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<link rel="icon" type="image/png" sizes="96x96" href="{{ site.baseurl }}/assets/images/favicon/favicon-96x96.png">
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<link rel="icon" type="image/png" sizes="16x16" href="{{ site.baseurl }}/assets/images/favicon/favicon-16x16.png">
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<link rel="manifest" href="{{ site.baseurl }}/assets/images/favicon/manifest.json">
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<meta name="msapplication-TileColor" content="#ffffff">
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<meta name="msapplication-TileImage" content="{{ site.baseurl }}/assets/images/favicon/ms-icon-144x144.png">
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<meta name="theme-color" content="#ffffff">

‎_includes/footer.html

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<div class="inner">
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<p><a href="#top" id="top_link">Top &#9650;</a></p>
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</div>
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<div id="footer_wrap" class="outer">
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<footer class="inner">
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<div class="acknowledge">
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</div>
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<img class="img_bottom rotation" src="{{ site.baseurl }}/{{ site.logo }}" alt="{{ site.name }}">
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<div class="license">
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<p class="p_bottom" style="color:white">&copy; {{ site.time | date: '%Y' }} | This page is available under the <a target="_blank" href="https://creativecommons.org/licenses/by-sa/4.0/">Creative Commons Attribution-ShareAlike License</a></p>
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</div>
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</footer>
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</div>
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<script src="https://ajax.googleapis.com/ajax/libs/jquery/3.3.1/jquery.min.js"></script>
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<script src="https://ajax.googleapis.com/ajax/libs/jqueryui/1.12.1/jquery-ui.min.js"></script>
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<script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.0/umd/popper.min.js" integrity="sha384-cs/chFZiN24E4KMATLdqdvsezGxaGsi4hLGOzlXwp5UZB1LY//20VyM2taTB4QvJ" crossorigin="anonymous"></script>
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<script src="https://stackpath.bootstrapcdn.com/bootstrap/4.1.0/js/bootstrap.min.js" integrity="sha384-uefMccjFJAIv6A+rW+L4AHf99KvxDjWSu1z9VI8SKNVmz4sk7buKt/6v9KI65qnm" crossorigin="anonymous"></script>
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<script src="{{ site.baseurl }}/assets/js/clipboard.min.js"></script>
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<script src="{{ site.baseurl }}/assets/js/scripts.js"></script>

‎_includes/head.html

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<head>
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<link href='https://fonts.googleapis.com/css?family=Noto+Sans' rel='stylesheet' type='text/css'>
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<meta charset="utf-8">
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<meta http-equiv="X-UA-Compatible" content="chrome=1">
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<meta name="viewport" content="width=device-width, initial-scale=1">
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<title>{% if page.title %}
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{{ page.title | prepend: site.name | escape }}
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{% else %}
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{{ site.title | escape }}
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{% endif %}
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</title>
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<meta name="description" content="{% if page.excerpt %}{{ page.excerpt | strip_html | strip_newlines | truncate: 160 }}{% else %}{{ site.description }}{% endif %}">
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{% include favicon.html %}
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<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/4.0.0/css/bootstrap.min.css" integrity="sha384-Gn5384xqQ1aoWXA+058RXPxPg6fy4IWvTNh0E263XmFcJlSAwiGgFAW/dAiS6JXm" crossorigin="anonymous">
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<link rel="stylesheet" href="{{ "/assets/css/main.css" | prepend: site.baseurl }}">
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<link rel="stylesheet" href="{{ "/assets/css/stylesheet.css" | prepend: site.baseurl }}">
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<link rel="canonical" href="{{ page.url | replace:'index.html','' | prepend: site.baseurl | prepend: site.url }}">
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<link rel="alternate" type="application/rss+xml" title="{{ site.title }}" href="{{ "/feed.xml" | prepend: site.baseurl | prepend: site.url }}">
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<!-- Font Awesome -->
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<script defer src="{{ site.baseurl }}/assets/js/fontawesome-all.js"></script>
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</head>

‎_includes/header.html

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<a name="top"></a>
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<div id="header_wrap" class="outer">
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<header class="inner">
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<a id="forkme_banner" href="{{ site.repo }}"></a>
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<a id="twitter_banner" href="{{ site.twitter }}"></a>
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<div class="biohex-logo">
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<a href="{{ site.baseurl }}">
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<img class="hexagon" src="{{ site.baseurl }}/{{ site.logo }}" alt="{{ site.name }}">
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</a><span style="font-size:60px; padding:30px; position: absolute">OpenSchemas</span>
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</div>
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<div class="git-edit">
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<a target="_blank" href="{{ site.repo }}/tree/master/{{ page.folder }}{{ page.path }}" class="btn btn-sm" role="button">
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<b>Edit me&nbsp;</b>
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<i class="fas fa-pencil-alt"></i>
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</a>
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</div>
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</header>
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</div>

‎_includes/mobile_navbar.html

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<div id="mobile_cont">
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<div class="mobile_nav">
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<div class="navbar-toggle">
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<span class="sr-only">Toggle navigation</span>
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<span class="icon-bar"></span>
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<span class="icon-bar"></span>
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<span class="icon-bar"></span>
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</div>
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</div>
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<div id="mobile_links">
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<p><a href="{{ site.baseurl }}" class="link-navbar"><div class="mobile_buttons">Home</div></a></p>
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<p><a href="{{ site.baseurl }}/join/" class="link-navbar"><div class="mobile_buttons">Join</div></a></p>
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<p><a href="{{ site.baseurl }}/specifications/" class="link-navbar"><div class="mobile_buttons">Specifications</div></a></p>
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<p><a href="{{ site.baseurl }}/software/" class="link-navbar"><div class="mobile_buttons">Software</div></a></p>
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</div>
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</div>

‎_includes/navbar.html

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<!-- If you edit this file, remember to edit the mobile_navbar.html file as well -->
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<div class="trigger">
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<div class="trigger_links">
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<a href="{{ site.baseurl }}" role="button" class="btn btn-primary"><i class="fas fa-home"></i> Home</a>
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<a href="{{ site.baseurl }}/join/" role="button" class="btn btn-primary">Join</a>
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<div class="btn-group" role="group">
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<button class="btn btn-primary dropdown-toggle" type="button" id="btnCommunity" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">
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Specifications
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</button>
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<div class="dropdown-menu" aria-labelledby="btnCommunity">
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<a class="dropdown-item" href="{{ site.baseurl }}/specifications/">Current</a>
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<a class="dropdown-item" href="{{ site.baseurl }}/drafts">Drafts</a>
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</div>
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</div>
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<a href="{{ site.baseurl }}/software/" role="button" class="btn btn-primary">Software</a>
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</div>
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{% include mobile_navbar.html %}
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</div>

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