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Travis Jacobs
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Update digitization.md
Update link to paper list.
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Digitization
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============
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Digitized figures from papers in the literature will be used to validate the ion channel models of ChannelWorm.
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Digitized figures from papers in the literature will be used to validate and refine the ion channel models of ChannelWorm.
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For example, a study which conducts [patch clamp recordings](https://en.wikipedia.org/wiki/Patch_clamp) will produce data that describe electrical properties of ion channels.
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This data is valuable to anyone modeling these ion channels; we can use actual ion channel data to guide our efforts toward biological realism, and incorporate it in [confirming that we are modeling what we are intending to](validation/).
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If you want to help digitize some figures for this part of the OpenWorm project, check out the [detailed walkthrough](#Walkthrough-of-the-process) below.
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## So why digitization?
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In a published paper, data is included in an expressive form, such as a visual plot, rather than as raw numerical data. This is not to say that we cannot *extract* the information and make use of it, however.
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1. Select a paper.
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* For example, let's use [this Jospin et al. article](http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2173050/).
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* [Here]() is a list of papers *you* can choose from
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* [Here](https://drive.google.com/folderview?id=0B4qffTA1q81rfmhoZzBva2xKRTJIVTlhR2plYTF2S2JCNXBLODJWN09KUHU4X09FN0hEQlE&usp=sharing) is a list of papers *you* can choose from
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2. Select the figures that describe ion channel properties.
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* In our example, [figure 2B](http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2173050/figure/fig2/) is looking promising.
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* There will likely be a number of relevant figures in each paper you process.

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