Repositories list

• variation-normalizer-manuscript

  Public
  Issue tracker for Variation Normalizer manuscript work

  Jupyter Notebook

  •

  MIT License

  •0•2•8•4•Updated Aug 9, 2025Aug 9, 2025

• cool-seq-tool

  Public
  bioinformaticsgenomics

  Python

  •

  MIT License

  •0•4•30•0•Updated Aug 4, 2025Aug 4, 2025

• fda-nlp

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•7•0•Updated Jul 29, 2025Jul 29, 2025

• software-templates

  Public
  Cookiecutter templates for lab software projects

  Python

  •

  MIT License

  •0•0•19•0•Updated Jul 22, 2025Jul 22, 2025

• regbot

  Public
  Python

  •

  MIT License

  •0•1•9•0•Updated Jul 17, 2025Jul 17, 2025

• wags-tails

  Public
  Data acquisition tools for Wagnerds

  bioinformaticsgenomics-data

  Python

  •

  MIT License

  •0•1•14•0•Updated Jul 16, 2025Jul 16, 2025

• agct

  Public
  Another Genome Conversion Tool: Python frontend to Rust chainfile crate

  bioinformaticsgenomics

  Python

  •

  MIT License

  •0•3•6•0•Updated Jul 9, 2025Jul 9, 2025

• genomicmedlab.org

  Public
  Building a lab website

  HTML

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 23, 2024Dec 23, 2024

• CSHL-Variant-Representation-and-Annotation

  Public
  This repo contains exercises for the CSHL 2024 Seqtec course

  MIT License

  •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

• .github

  Public
  Organization-wide default community health files and configurations for GML repositories.

  MIT License

  •0•0•3•0•Updated Dec 3, 2024Dec 3, 2024

• bioinformatics-python

  Public
  This repo contains exercises for the CSHL 2024 Seqtec course

  Jupyter Notebook

  •

  MIT License

  •1•1•1•0•Updated Nov 20, 2024Nov 20, 2024

• variant-interpretation

  Public
  This repo contains exercises for the CSHL 2024 Seqtec course

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Nov 20, 2024Nov 20, 2024

• gks-metaschema

  Public
  Tools and scripts for parsing the GKS standards metaschemas

  Python

  •

  Apache License 2.0

  •2•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• gregor

  Public
  Handle GREGoR Consortium tasks/code

  Python

  •

  MIT License

  •0•0•10•0•Updated Oct 16, 2024Oct 16, 2024

• seqrepo-rest-service

  Public
  OpenAPI-based REST interface to biological sequences and sequence metadata

  Python

  •

  Apache License 2.0

  •5•0•0•0•Updated Sep 25, 2024Sep 25, 2024

• vrs-annotator

  Public
  Annotates VCF Variants with VRS IDs

  Jupyter Notebook

  •3•0•0•0•Updated Sep 12, 2024Sep 12, 2024

• civic-meeting

  Public
  Repo for advertising and organizing CIViC hackathon/meeting activities

  4•0•0•0•Updated Mar 12, 2024Mar 12, 2024

• dcd_mapping

  Public
  AVE DCD Mapping

  Jupyter Notebook

  •

  MIT License

  •4•0•0•0•Updated Feb 1, 2024Feb 1, 2024

• therapy_normalization_analysis

  Public
  Jupyter Notebook

  •0•0•3•0•Updated Jan 19, 2024Jan 19, 2024

• fantasy-football-rulebook

  Public
  Rulebook for the annual Griffith / Wagner Labs Fantasy Football League

  Creative Commons Zero v1.0 Universal

  •1•0•1•0•Updated Aug 21, 2023Aug 21, 2023

• w3id.org

  Public
  Website source code for w3id.org.

  HTML

  •1.4k•0•0•0•Updated Apr 4, 2023Apr 4, 2023

• schema-automator

  Public
  Automated assistance for the schema development lifecycle

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •20•0•0•0•Updated Aug 23, 2022Aug 23, 2022

• MaveDB

  Public
  MaveDB database web application

  Python

  •

  GNU Affero General Public License v3.0

  •5•0•0•0•Updated Aug 10, 2022Aug 10, 2022

• wagner-lab-issues

  Public
  General issues and tasks for the Wagner Lab.

  0•0•13•0•Updated Jun 1, 2022Jun 1, 2022

• curated-gene-lists

  Public
  HTML

  •

  MIT License

  •0•0•4•0•Updated Mar 12, 2022Mar 12, 2022

• tragedy

  Public
  Truly Resplendent Architecture for Genomic Evidence Discovery in YAML

  Python

  •

  Apache License 2.0

  •0•0•4•0•Updated Feb 24, 2022Feb 24, 2022

• interop

  Public
  General discussion of topics related to interoperability

  HTML

  •4•0•0•0•Updated Dec 26, 2021Dec 26, 2021

• phenopacket-schema

  Public
  Repository for the GA4GH inlined phenopacket schema

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •32•0•0•0•Updated May 7, 2021May 7, 2021

• protobuf_testing

  Public
  Testing Google Protocol Buffers for use with VRS

  0•0•0•0•Updated Mar 18, 2021Mar 18, 2021

• preferredlist

  Public
  Lists of genes and hotspots for filter pass-through inspection in variant interpretation

  MIT License

  •1•1•5•0•Updated Dec 1, 2020Dec 1, 2020