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    • Python
      BSD 3-Clause "New" or "Revised" License
      0170Updated Mar 27, 2026Mar 27, 2026
    • Python
      BSD 3-Clause "New" or "Revised" License
      1000Updated Mar 27, 2026Mar 27, 2026
    • Here you can find the development related to the paper "Geometric and Topological Regularization for Bioimage Segmentation"
      Python
      1000Updated Mar 27, 2026Mar 27, 2026
    • Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
      Jupyter Notebook
      Other
      15001Updated Mar 17, 2026Mar 17, 2026
    • JavaScript
      0000Updated Mar 15, 2026Mar 15, 2026
    • VessQC

      Public
      Vessel Quality Check
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Mar 13, 2026Mar 13, 2026
    • mmv_im2im

      Public
      Python package for deep learning based image to image transformation
      Python
      MIT License
      253241Updated Mar 12, 2026Mar 12, 2026
    • Python
      BSD 3-Clause "New" or "Revised" License
      0101Updated Feb 1, 2026Feb 1, 2026
    • AI Data Portal for Biology & Microscopy, by AMBIOM group
      MIT License
      0000Updated Jan 29, 2026Jan 29, 2026
    • A small browser-based platformer game developed by Lukas during his student internship.
      JavaScript
      0000Updated Jan 29, 2026Jan 29, 2026
    • This Repo contains sample csv data from already published datasets
      0000Updated Jan 19, 2026Jan 19, 2026
    • FCIS

      Public
      Four Color Theorem for Cell Instance Segmentation, ICML.
      Python
      MIT License
      5000Updated Dec 21, 2025Dec 21, 2025
    • Repository to host scripts which enable handling metadata for BioFileFinder.
      Python
      0000Updated Dec 3, 2025Dec 3, 2025
    • Code and experiments for "Data Efficiency and Transfer Robustness in Biomedical Image Segmentation: A Study of Redundancy and Forgetting with Cellpose" (IEEE BI…
      Python
      MIT License
      0000Updated Nov 19, 2025Nov 19, 2025
    • A plugin that enables image segmentation provided by Allen Institute for Cell Science
      Python
      BSD 3-Clause "New" or "Revised" License
      8000Updated Nov 18, 2025Nov 18, 2025
    • AMBIOM group website
      HTML
      BSD 3-Clause "New" or "Revised" License
      0000Updated Nov 16, 2025Nov 16, 2025
    • Napari plugin for ml segmentation
      Python
      Other
      2000Updated Nov 7, 2025Nov 7, 2025
    • Python
      MIT License
      0010Updated Oct 28, 2025Oct 28, 2025
    • Fork of leonardo_toolset
      Python
      MIT License
      2000Updated Oct 15, 2025Oct 15, 2025
    • Python
      Other
      10000Updated Oct 14, 2025Oct 14, 2025
    • A Napari plugin for the segmentation of regions by flood_fill
      Python
      BSD 3-Clause "New" or "Revised" License
      1000Updated Oct 2, 2025Oct 2, 2025
    • A Napari plugin for the segmentation of regions by flood_fill + bone tunnel segmentation
      Python
      BSD 3-Clause "New" or "Revised" License
      1000Updated Oct 2, 2025Oct 2, 2025
    • Python
      0000Updated Sep 25, 2025Sep 25, 2025
    • Python
      2202Updated Sep 15, 2025Sep 15, 2025
    • An Active Learning Pipeline Based on Data-Centric AI for Biomedical Image Instance Segmentation
      Python
      MIT License
      0100Updated Aug 26, 2025Aug 26, 2025
    • Python
      MIT License
      1110Updated Aug 21, 2025Aug 21, 2025
    • 0000Updated Aug 6, 2025Aug 6, 2025
    • MIT License
      0000Updated Apr 28, 2025Apr 28, 2025
    • Napari plugin for 2D microscopy segmentation
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Jan 31, 2025Jan 31, 2025
    • 3D volume viewer
      JavaScript
      BSD 3-Clause "New" or "Revised" License
      0013Updated Dec 3, 2024Dec 3, 2024
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