Repositories list

• ProteomicsEducation

  Public
  Jupyter Notebook

  •4•40•0•0•Updated Jan 20, 2026Jan 20, 2026

• pancancerProteinMRNA

  Public
  Jupyter Notebook

  •2•0•0•0•Updated May 30, 2025May 30, 2025

• scGroupComparisonTutorial

  Public
  0•0•0•0•Updated May 30, 2025May 30, 2025

• cptac

  Public
  Python packaging for CPTAC data

  Jupyter Notebook

  •

  Other

  •30•110•14•1•Updated Jun 24, 2024Jun 24, 2024

• TMT_QC

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Feb 26, 2024Feb 26, 2024

• WhySingleCell

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

• organoid_scp

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Sep 16, 2023Sep 16, 2023

• WhenMutationsDontMatter

  Public
  Jupyter Notebook

  •3•0•0•0•Updated Mar 10, 2023Mar 10, 2023

• SCP_comp_review

  Public
  Jupyter Notebook

  •1•0•2•0•Updated Feb 15, 2023Feb 15, 2023

• pancancerCNV

  Public
  Jupyter Notebook

  •1•1•0•0•Updated Sep 2, 2022Sep 2, 2022

• MAPSI

  Public
  Mzml And Processed Spectra Interface

  Jupyter Notebook

  •0•0•0•0•Updated May 26, 2022May 26, 2022

• vaccine_reevaluation

  Public
  Jupyter Notebook

  •1•1•0•1•Updated May 18, 2022May 18, 2022

• SexualAssaultKits

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 11, 2022Jan 11, 2022

• ProteinComplexes_2.0

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Dec 28, 2021Dec 28, 2021

• ProteinComplexes

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Dec 28, 2021Dec 28, 2021

• SingleCellSpectra

  Public
  Jupyter Notebook

  •2•2•0•0•Updated Nov 5, 2021Nov 5, 2021

• biograder

  Public
  Python

  •

  MIT License

  •2•2•0•0•Updated Sep 28, 2021Sep 28, 2021

• SingleCellBenchMark

  Public
  Jupyter Notebook

  •0•2•0•0•Updated Aug 24, 2021Aug 24, 2021

• PlotUtils

  Public
  Python

  •0•0•0•0•Updated Aug 5, 2021Aug 5, 2021

• TwoMonthLymphocyte

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 26, 2021Jul 26, 2021

• SingleCellSampleSize

  Public
  R

  •2•0•0•0•Updated Mar 19, 2021Mar 19, 2021

• Lymphocytes2

  Public
  M. McCown's code for her honor's thesis on monitoring lymphocyte proteomics.

  Jupyter Notebook

  •0•0•0•0•Updated Mar 5, 2021Mar 5, 2021

• GenericDataAPI

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 6, 2021Feb 6, 2021

• autoPOTS_demonstration

  Public
  This repository contains analysis accompanying the paper "Fully automated sample processing and analysis workflow for low-input proteome profiling" by Liang et …

  Jupyter Notebook

  •0•0•0•0•Updated Jan 12, 2021Jan 12, 2021

• covid19pandas

  Public
  COVID-19 data as pandas dataframes. Built-in plotting functions. Tutorials in our docs.

  Python

  •

  Apache License 2.0

  •3•6•0•0•Updated Oct 29, 2020Oct 29, 2020

• Lymphocytes1

  Public
  Jupyter Notebook

  •0•2•0•0•Updated Oct 15, 2020Oct 15, 2020

• autograder

  Public
  code to make grading easy

  Python

  •0•0•0•0•Updated Oct 8, 2020Oct 8, 2020

• DataSharingTemplateRepository

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Oct 2, 2020Oct 2, 2020

• WhenMutationsMatter

  Public
  Jupyter Notebook

  •4•1•0•0•Updated May 19, 2020May 19, 2020

• BIO465

  Public
  Datasets and methods for Bio 465

  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 29, 2020Apr 29, 2020