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    38 repositories

    • heudiconv

      Public
      Flexible DICOM conversion into structured directory layouts
      Python
      •
      Other
      •138•283•195•23•Updated Sep 10, 2026Sep 10, 2026

    • nibabel

      Public
      Python package to access a cacophony of neuro-imaging file formats
      pythondicomneuroimaging
      pythondicomneuroimagingniftitrktckbrain-imagingecatgiftistreamlines
      Python
      •
      Other
      •296•791•117•44•Updated Sep 7, 2026Sep 7, 2026

    • nipype

      Public
      Workflows and interfaces for neuroimaging packages
      pythondata-sciencebig-data
      pythondata-sciencebig-dataworkflow-enginedataflowneuroimagingdataflow-programmingbrain-imagingbrainweb
      Python
      •
      Other
      •539•835•409•17•Updated Sep 3, 2026Sep 3, 2026

    • nitime

      Public
      Timeseries analysis for neuroscience data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •84•261•18•1•Updated Sep 1, 2026Sep 1, 2026

    • mindboggle-data

      Public
      0•0•0•0•Updated Aug 24, 2026Aug 24, 2026

    • mindboggle

      Public template
      Automated anatomical brain label/shape analysis software (+ website)
      pythonimage-processingpython3
      pythonimage-processingpython3image-analysissurfacesshape-descriptorbrain-imagingmesh-processingshape-analysis
      Python
      •
      Other
      •56•156•21•0•Updated Aug 24, 2026Aug 24, 2026

    • nilabels

      Public
      Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.
      Python
      •
      MIT License
      •2•23•0•2•Updated Jul 21, 2026Jul 21, 2026

    • nitransforms

      Public
      a standalone fork of nipy/nibabel#656
      Python
      •
      MIT License
      •18•35•28•9•Updated Apr 1, 2026Apr 1, 2026

    • PyLocator

      Public
      Localization of EEG-electrodes from MRI-recordings
      Python
      •
      Other
      •3•7•1•1•Updated Nov 13, 2025Nov 13, 2025

    • nipy

      Public
      Neuroimaging in Python FMRI analysis package
      Python
      •
      Other
      •145•415•31•9•Updated Dec 24, 2024Dec 24, 2024

    • nipy-wheels

      Public
      Python
      •1•0•1•0•Updated Oct 6, 2024Oct 6, 2024

    • gradunwarp

      Public
      Gradient Unwarping in Python
      Python
      •
      Other
      •39•0•0•0•Updated Oct 4, 2024Oct 4, 2024

    • nipype_tutorial

      Public
      This is a fork. Do not clone from this repository.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •68•0•0•0•Updated Mar 4, 2024Mar 4, 2024

    • data-packages

      Public
      Serving nipy data packages via Github pages
      Python
      •0•0•0•0•Updated Dec 21, 2023Dec 21, 2023

    • PySurfer

      Public
      Cortical neuroimaging visualization in Python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •99•253•26•4•Updated Dec 15, 2023Dec 15, 2023

    • nipy.github.io

      Public
      Main website for the Neuroimaging in Python community
      HTML
      •11•9•7•1•Updated Dec 13, 2023Dec 13, 2023

    • discussions

      Public
      0•0•0•0•Updated Aug 26, 2023Aug 26, 2023

    • heudiconv-joss-paper

      Public archive
      Repository to prepare HeuDiConv paper
      Python
      •
      MIT License
      •22•2•0•0•Updated Jul 17, 2023Jul 17, 2023

    • quickshear

      Public
      Quickshear Defacing for Neuroimages
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•15•0•0•Updated May 16, 2023May 16, 2023

    • dmriprep

      Public archive
      MOVED TO https://github.com/nipreps/dmriprep
      Python
      •
      Other
      •11•17•33•13•Updated Dec 26, 2022Dec 26, 2022

    • niwidgets

      Public
      Neuroimaging widgets for jupyter notebooks
      Jupyter Notebook
      •
      Other
      •33•85•18•14•Updated Dec 8, 2022Dec 8, 2022

    • napari-nibabel

      Public
      A napari plugin that uses nibabel to display medical images
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•3•2•1•Updated Oct 15, 2021Oct 15, 2021

    • mindboggle-assets

      Public
      Media assets for the mindboggle website
      0•0•0•0•Updated Jun 9, 2019Jun 9, 2019

    • workshops

      Public
      Brain imaging workshops
      pythonreproducible-researchneuroimaging
      pythonreproducible-researchneuroimaging
      Jupyter Notebook
      •30•14•0•4•Updated Apr 27, 2019Apr 27, 2019

    • nipy-artwork

      Public
      Fliers, images, etc
      TeX
      •
      Other
      •15•9•0•0•Updated Jan 27, 2019Jan 27, 2019

    • brainx

      Public
      Tools for analysis of brain imaging-derived networks, based on NetworkX
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •27•42•2•2•Updated Jan 27, 2019Jan 27, 2019

    • nibotmi

      Public
      NIPY BuildBot Master Instance
      Python
      •
      BSD 2-Clause "Simplified" License
      •9•11•6•1•Updated Feb 17, 2018Feb 17, 2018

    • nireg

      Public
      Brain image registration package
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •12•31•5•0•Updated Jun 21, 2016Jun 21, 2016

    • blog

      Public
      Makefile
      •1•1•0•0•Updated Jan 31, 2015Jan 31, 2015

    • nibotme-logs

      Public
      NIPY BuildBot Master Instance (buildbot logs)
      0•0•0•0•Updated Oct 27, 2013Oct 27, 2013
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