Repositories list

• mica2

  Public
  Mica is a web portal for epidemiological study consortia.

  Java

  •

  GNU General Public License v3.0

  •15•11•34•18•Updated Aug 7, 2025Aug 7, 2025

• opal

  Public
  OBiBa’s core database application for biobanks or epidemiological studies.

  Java

  •

  GNU General Public License v3.0

  •20•31•25•0•Updated Jul 30, 2025Jul 30, 2025

• resourcer

  Public
  R

  •

  GNU Lesser General Public License v2.1

  •6•2•3•0•Updated Jul 25, 2025Jul 25, 2025

• agate

  Public
  OBiBa's user ID provider.

  Java

  •

  GNU General Public License v3.0

  •7•4•4•0•Updated Jul 22, 2025Jul 22, 2025

• helm-charts

  Public
  OBiBa Helm Charts

  Smarty

  •

  MIT License

  •0•2•0•0•Updated Jul 20, 2025Jul 20, 2025

• docker-opal

  Public
  Shell

  •

  GNU General Public License v3.0

  •11•7•5•0•Updated Jul 20, 2025Jul 20, 2025

• docker-amber

  Public
  Docker images for Amber server and apps

  Dockerfile

  •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• amber-studio

  Public
  Content management app for Amber

  vuequasar

  Vue

  •

  MIT License

  •1•1•5•0•Updated Jul 18, 2025Jul 18, 2025

• amber

  Public
  Data collection server

  nodejsjavascriptmongodb

  JavaScript

  •

  GNU General Public License v3.0

  •0•0•1•0•Updated Jul 18, 2025Jul 18, 2025

• opal-doc

  Public
  Opal documentation

  Python

  •2•2•1•0•Updated Jul 13, 2025Jul 13, 2025

• obiba-commons

  Public
  Reusable code for persistence, security and spring.

  Java

  •9•5•0•0•Updated Jul 11, 2025Jul 11, 2025

• rock

  Public
  R server with a REST API

  Java

  •

  GNU General Public License v3.0

  •1•3•1•2•Updated Jul 10, 2025Jul 10, 2025

• obiba.github.io

  Public
  Obiba Website

  HTML

  •2•0•0•0•Updated Jun 26, 2025Jun 26, 2025

• iac-helm-datashield

  Public
  Deployment package for installing DataSHIELD in a Secure Data Environment

  Smarty

  •

  MIT License

  •1•0•0•0•Updated Jun 19, 2025Jun 19, 2025

• agate-python-client

  Public
  Python command lines for accessing Agate web services.

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 18, 2025Jun 18, 2025

• mica-python-client

  Public
  Python command lines for accessing Mica web services.

  Python

  •

  GNU General Public License v3.0

  •0•1•0•2•Updated Jun 16, 2025Jun 16, 2025

• opal-python-client

  Public
  Python command lines for accessing Opal web services.

  Python

  •

  GNU General Public License v3.0

  •3•4•0•1•Updated Jun 15, 2025Jun 15, 2025

• magma

  Public
  Data and meta-data abstraction layer.

  Java

  •

  GNU General Public License v3.0

  •15•7•0•0•Updated Jun 14, 2025Jun 14, 2025

• amber-collect

  Public
  Data collection app for Amber

  vuequasar

  Vue

  •

  MIT License

  •0•0•0•0•Updated Jun 13, 2025Jun 13, 2025

• amber-template

  Public template
  Amber server with client apps, as Docker images to build.

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Jun 13, 2025Jun 13, 2025

• amber-visit

  Public
  Amber client app for collecting interview data

  JavaScript

  •

  MIT License

  •0•0•1•0•Updated Jun 7, 2025Jun 7, 2025

• obiba-home

  Public
  Obiba development environment

  HTML

  •2•0•0•0•Updated Jun 6, 2025Jun 6, 2025

• docker-rock

  Public
  Rock R server in a Docker container

  Shell

  •0•0•0•0•Updated May 23, 2025May 23, 2025

• opalr

  Public
  Opal R and Datashield utils

  R

  •3•3•3•0•Updated May 23, 2025May 23, 2025

• docker-r

  Public
  Docker image with R inside and a lot of system libs

  Dockerfile

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated May 23, 2025May 23, 2025

• amberr

  Public
  Amber R client

  R

  •0•0•0•0•Updated May 15, 2025May 15, 2025

• docker-agate

  Public
  Shell

  •

  GNU General Public License v3.0

  •3•0•1•0•Updated May 9, 2025May 9, 2025

• docker-mica

  Public
  Shell

  •

  GNU General Public License v3.0

  •3•0•0•0•Updated May 8, 2025May 8, 2025

• rock-spawner

  Public
  Rock server pod spawner in a Kubernetes environment

  Python

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Apr 30, 2025Apr 30, 2025

• mica-doc

  Public
  Mica documentation

  Python

  •2•0•1•0•Updated Apr 16, 2025Apr 16, 2025