Move scripts into a package

Author: Marcin Kardas

Diff for: MANIFEST.in

@@ -0,0 +1,2 @@
+include axcell/scripts/*
+include axcell/scripts/patches/*

Diff for: extract_tables.py renamed to axcell/data/extract_tables.py

@@ -11,7 +11,7 @@
 from ..helpers.jupyter import display_table
 import string
 import random
-from extract_tables import extract_tables
+from axcell.data.extract_tables import extract_tables
 
 
 class Paper:

Diff for: axcell/data/paper_collection.py

@@ -21,13 +21,13 @@ def rw_bind(path): return dict(bind=path, mode='rw')
 
 
 class LatexConverter:
-    def __init__(self, base_path):
+    def __init__(self):
         # pull arxivvanity/engrafo image
         self.client = docker.from_env()
-        self.base_path = Path(base_path)
+        self._scripts_path = Path(__file__).resolve().parent.parent / 'scripts'
 
     def latex2html(self, source_dir, output_dir, use_named_volumes=False):
-        base = self.base_path
+        base = self._scripts_path
         source_dir = Path(source_dir)
         output_dir = Path(output_dir)
         scriptname = "/files/latex2html.sh"

Diff for: axcell/helpers/latex_converter.py

@@ -0,0 +1 @@
+#  Copyright (c) Facebook, Inc. and its affiliates. All Rights Reserved

Diff for: axcell/mocks/__init__.py

@@ -0,0 +1 @@
+#  Copyright (c) Facebook, Inc. and its affiliates. All Rights Reserved

Diff for: axcell/models/__init__.py

@@ -17,3 +17,6 @@ dependencies:
 - ipython=7.5.0
 - joblib=0.13.2
 - python-magic=0.4.15
+- docker-py=4.1.0
+- python-magic=0.4.15
+- html5lib=1.0.1

Diff for: guess_main.py renamed to axcell/scripts/guess_main.py

@@ -13,7 +13,7 @@
 #     text = read_file.read()
 # pattern = re.compile(r"^__version__ = ['\"]([^'\"]*)['\"]", re.MULTILINE)
 # version = pattern.search(text).group(1)
-version="2.0-alpha"
+version="1.0-alpha"
 
 # # Extract long_description
 # path = os.path.join(directory, 'README.md')
@@ -23,11 +23,12 @@
 setuptools.setup(
     name='axcell',
     version=version,
-    url='https://...',
-    description='System for extracting data from arxiv papers',
-    long_description_content_type='text/markdown',
-    long_description=long_description,
-    license='???',
+    url='https://github.com/paperswithcode/axcell',
+    description='System for extracting machine learning results from arxiv papers',
+    author='Papers with Code',
+#    long_description_content_type='text/markdown',
+#    long_description=long_description,
+    license='Apache License 2.0',
     packages=setuptools.find_packages(),
     include_package_data=True,
 
@@ -41,9 +42,8 @@
     ],
 
     project_urls={  # Optional
-        'Homepage': 'https://...',
-        'Source': 'https://...',
-        'Bug Reports': 'https://...',
-        'Citation': 'https://...',
+        'Homepage': 'https://github.com/paperswithcode/axcell',
+        'Source': 'https://github.com/paperswithcode/axcell',
+        'Citation': 'https://arxiv.org/abs/2004.14356',
     },
 )