bump dependency versions

Author: paulk-asert

build.gradle

@@ -15,7 +15,7 @@
  */
 
 plugins {
-    id 'com.github.ben-manes.versions' version '0.50.0'
+    id 'com.github.ben-manes.versions' version '0.51.0'
 }
 
 ext.UNSTABLE = /^([0-9,.-]+[.-](alpha|beta|rc)[.\d-]*)|20030203.000550$/

gradle.properties

@@ -19,34 +19,36 @@ group               = org.groovycookbook
 sourceCompatibility = 1.8
 targetCompatibility = 1.8
 
+#arpackNgPlatformVersion = 3.9.1-1.5.10
 arpackNgPlatformVersion = 3.9.0-1.5.9
-beamVersion             = 2.52.0
+beamVersion             = 2.56.0
 camelLegacyVersion      = 3.14.4
 camelVersion            = 3.20.2
 chocoVersion            = 4.10.5
-commonsCsvVersion       = 1.10.0
+commonsCsvVersion       = 1.11.0
 commonsIoVersion        = 2.11.0
 commonsMath3Version     = 3.6.1
 commonsMath4Version     = 4.0-beta1
-djlVersion              = 0.25.0
-groovy3Version          = 3.0.19
-groovy4Version          = 4.0.16
-igniteVersion           = 2.15.0
-jacksonVersion          = 2.16.0
+djlVersion              = 0.28.0
+groovy3Version          = 3.0.21
+groovy4Version          = 4.0.21
+igniteVersion           = 2.16.0
+jacksonVersion          = 2.17.1
 jfreechartVersion       = 1.5.4
 junitVersion            = 4.13.1
-knowmXchartVersion      = 3.8.6
-log4j2Version           = 2.22.0
+knowmXchartVersion      = 3.8.8
+log4j2Version           = 2.23.1
 nd4jVersion             = 1.0.0-M2.1
 nlpcraftVersion         = 0.9.0
 openblasPlatformVersion = 0.3.23-1.5.9
+#openblasPlatformVersion = 0.3.26-1.5.10
 opencsvVersion          = 5.9
 opennlpJdk8Version      = 1.9.4
 opennlpJdk11Version     = 2.2.0
-opennlpLatestVersion    = 2.3.1
-slf4jVersion            = 2.0.9
-smileVersion            = 3.0.2
+opennlpLatestVersion    = 2.3.3
+slf4jVersion            = 2.0.13
+smileVersion            = 3.1.0
 tablesawVersion         = 0.43.1
-tikaVersion             = 2.9.1
+tikaVersion             = 2.9.2
 tribuoVersion           = 4.3.1
 wekaVersion             = 3.9.6

gradle/wrapper/gradle-wrapper.jar

@@ -1,6 +1,7 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-8.5-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-8.7-bin.zip
 networkTimeout=10000
+validateDistributionUrl=true
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists

gradle/wrapper/gradle-wrapper.properties

@@ -83,10 +83,8 @@ done
 # This is normally unused
 # shellcheck disable=SC2034
 APP_BASE_NAME=${0##*/}
-APP_HOME=$( cd "${APP_HOME:-./}" && pwd -P ) || exit
-
-# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
-DEFAULT_JVM_OPTS='"-Xmx64m" "-Xms64m"'
+# Discard cd standard output in case $CDPATH is set (https://github.com/gradle/gradle/issues/25036)
+APP_HOME=$( cd "${APP_HOME:-./}" > /dev/null && pwd -P ) || exit
 
 # Use the maximum available, or set MAX_FD != -1 to use that value.
 MAX_FD=maximum
@@ -133,26 +131,29 @@ location of your Java installation."
     fi
 else
     JAVACMD=java
-    which java >/dev/null 2>&1 || die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
+    if ! command -v java >/dev/null 2>&1
+    then
+        die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
 
 Please set the JAVA_HOME variable in your environment to match the
 location of your Java installation."
+    fi
 fi
 
 # Increase the maximum file descriptors if we can.
 if ! "$cygwin" && ! "$darwin" && ! "$nonstop" ; then
     case $MAX_FD in #(
       max*)
         # In POSIX sh, ulimit -H is undefined. That's why the result is checked to see if it worked.
-        # shellcheck disable=SC3045 
+        # shellcheck disable=SC2039,SC3045
         MAX_FD=$( ulimit -H -n ) ||
             warn "Could not query maximum file descriptor limit"
     esac
     case $MAX_FD in  #(
       '' | soft) :;; #(
       *)
         # In POSIX sh, ulimit -n is undefined. That's why the result is checked to see if it worked.
-        # shellcheck disable=SC3045 
+        # shellcheck disable=SC2039,SC3045
         ulimit -n "$MAX_FD" ||
             warn "Could not set maximum file descriptor limit to $MAX_FD"
     esac
@@ -197,11 +198,15 @@ if "$cygwin" || "$msys" ; then
     done
 fi
 
-# Collect all arguments for the java command;
-#   * $DEFAULT_JVM_OPTS, $JAVA_OPTS, and $GRADLE_OPTS can contain fragments of
-#     shell script including quotes and variable substitutions, so put them in
-#     double quotes to make sure that they get re-expanded; and
-#   * put everything else in single quotes, so that it's not re-expanded.
+
+# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
+DEFAULT_JVM_OPTS='"-Xmx64m" "-Xms64m"'
+
+# Collect all arguments for the java command:
+#   * DEFAULT_JVM_OPTS, JAVA_OPTS, JAVA_OPTS, and optsEnvironmentVar are not allowed to contain shell fragments,
+#     and any embedded shellness will be escaped.
+#   * For example: A user cannot expect ${Hostname} to be expanded, as it is an environment variable and will be
+#     treated as '${Hostname}' itself on the command line.
 
 set -- \
         "-Dorg.gradle.appname=$APP_BASE_NAME" \

gradlew

@@ -43,11 +43,11 @@ set JAVA_EXE=java.exe
 %JAVA_EXE% -version >NUL 2>&1
 if %ERRORLEVEL% equ 0 goto execute
 
-echo.
-echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
-echo.
-echo Please set the JAVA_HOME variable in your environment to match the
-echo location of your Java installation.
+echo. 1>&2
+echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH. 1>&2
+echo. 1>&2
+echo Please set the JAVA_HOME variable in your environment to match the 1>&2
+echo location of your Java installation. 1>&2
 
 goto fail
 
@@ -57,11 +57,11 @@ set JAVA_EXE=%JAVA_HOME%/bin/java.exe
 
 if exist "%JAVA_EXE%" goto execute
 
-echo.
-echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME%
-echo.
-echo Please set the JAVA_HOME variable in your environment to match the
-echo location of your Java installation.
+echo. 1>&2
+echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME% 1>&2
+echo. 1>&2
+echo Please set the JAVA_HOME variable in your environment to match the 1>&2
+echo location of your Java installation. 1>&2
 
 goto fail
 

gradlew.bat

@@ -20,7 +20,13 @@ sourceCompatibility = 1.8
 dependencies {
     implementation "org.apache.groovy:groovy:$groovy4Version"
     implementation 'org.codehaus.gpars:gpars:1.2.1'
-    implementation "com.github.haifengl:smile-core:$smileVersion"
+    implementation("com.github.haifengl:smile-base:$smileVersion") {
+        transitive = false
+    }
+    implementation("com.github.haifengl:smile-core:$smileVersion") {
+        transitive = false
+    }
+    implementation "org.apache.commons:commons-csv:$commonsCsvVersion"
     implementation "org.apache.commons:commons-math4-legacy:$commonsMath4Version"
     runtimeOnly "org.slf4j:slf4j-jdk14:$slf4jVersion"
     runtimeOnly "org.bytedeco:openblas-platform:$openblasPlatformVersion"

subprojects/HousePricesGPars/build.gradle

@@ -30,7 +30,8 @@ var features = [
 ]
 
 var file = new File(getClass().classLoader.getResource('kc_house_data.csv').file)
-var table = Read.csv(file.toPath(), CSV.withFirstRecordAsHeader())
+var format = CSV.builder().setHeader().setSkipHeaderRecord(true).build()
+var table = Read.csv(file.toPath(), format)
 table = table.select(*features)
 var filtered = table.toList().findAll { it.apply('bedrooms') <= 30 }
 table = DataFrame.of(filtered)