leonardo_toolset/pyproject.toml at main · peng-lab/leonardo_toolset · GitHub

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[build-system]
requires = ["setuptools>=61", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "leonardo_toolset"
keywords = ["leonardo_toolset"]
version = "1.1.1"
description = "Leonardo: an LSFM image processing toolset"
authors = [
    {name = "Yu Liu", email = "liuyu9671@gmail.com" },
]
readme = "README.md"
license = { file = "LICENSE" }
requires-python = ">=3.10"
classifiers = [
    "Development Status :: 2 - Pre-Alpha",
    "Intended Audience :: Developers",
    "License :: OSI Approved :: MIT License",
    "Natural Language :: English",
    "Programming Language :: Python :: 3.10",
    "Topic :: Scientific/Engineering :: Image Processing",
]
dependencies = [
    "jax",
    "scikit-image",
    "torch",
    "torchvision",
    "tqdm",
    "matplotlib",
    "dm-haiku",
    "SimpleITK",
    "jaxwt",
    "ptwt",
    "PyWavelets",
    "antspyx",
    "opencv-python",
    "colour",
    "open3d",
    "h5py",
    "bioio<2",
    "bioio-tifffile",
    "jinja2",
    "pyyaml",
    "bioio-ome-tiff<1.2",
]

[project.optional-dependencies]
dev = [
    "bump-my-version>=1.1.1",
    "coverage>=5.1",
    "ipython>=7.15.0",
    "m2r2>=0.2.7",
    "pytest-runner>=5.2",
    "Sphinx>=3.4.3",
    "sphinx_rtd_theme>=0.5.1",
    "tox>=3.15.2",
    "twine>=3.1.1",
    "wheel>=0.34.2",
]
test = [
    "black>=19.10b0",
    "codecov>=2.1.4",
    "flake8>=3.8.3",
    "flake8-debugger>=3.2.1",
    "pytest>=5.4.3",
    "pytest-cov>=2.9.0",
    "pytest-raises>=0.11",
    "tox>=3.15.2",
]
all = [
    "bump-my-version>=1.1.1",
    "coverage>=5.1",
    "ipython>=7.15.0",
    "m2r2>=0.2.7",
    "pytest-runner>=5.2",
    "Sphinx>=3.4.3",
    "sphinx_rtd_theme>=0.5.1",
    "tox>=3.15.2",
    "twine>=3.1.1",
    "wheel>=0.34.2",
    "black>=19.10b0",
    "codecov>=2.1.4",
    "flake8>=3.8.3",
    "flake8-debugger>=3.2.1",
    "pytest>=5.4.3",
    "pytest-cov>=2.9.0",
    "pytest-raises>=0.11",
]

[project.urls]
Homepage = "https://github.com/peng-lab/leonardo_toolset"
"Bug Tracker" = "https://github.com/peng-lab/leonardo_toolset/issues"
Documentation = "https://github.com/peng-lab/leonardo_toolset#README.md"
"Source Code" = "https://github.com/peng-lab/leonardo_toolset"
"User Support" = "https://github.com/peng-lab/leonardo_toolset/issues"

[project.scripts]
run_fuse_illu = "leonardo_toolset.fusion.bin.run_fuse_illu:main"
run_fuse_det = "leonardo_toolset.fusion.bin.run_fuse_det:main"
run_destripe = "leonardo_toolset.destripe.bin.run_destripe:main"

[tool.setuptools]
package-dir = {"" = "."}

[tool.setuptools.packages.find]
where = ["."]

[tool.setuptools.package-data]
leonardo_toolset = ["**/*.yaml"]