package or namespace load failed for ‘MSnbase’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):

--- re-building ‘getting-started.Rmd’ using rmarkdown

processing vignette 'getting-started.Rmd' failed with diagnostics:

processing vignette 'parallel-annotation.Rmd' failed with diagnostics:

processing vignette 'peakPantheR-GUI.Rmd' failed with diagnostics:

processing vignette 'real-time-annotation.Rmd' failed with diagnostics:

Vignette re-building failed.

Failed to install 'peakPantheR' from local:

Process completed with exit code 1.

package or namespace load failed for ‘MSnbase’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):

--- re-building ‘getting-started.Rmd’ using rmarkdown

processing vignette 'getting-started.Rmd' failed with diagnostics:

processing vignette 'parallel-annotation.Rmd' failed with diagnostics:

processing vignette 'peakPantheR-GUI.Rmd' failed with diagnostics:

processing vignette 'real-time-annotation.Rmd' failed with diagnostics:

Vignette re-building failed.

Failed to install 'peakPantheR' from local:

Process completed with exit code 1.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/cache@v2, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Nonconforming tab character at (1) [-Wtabs]

Nonconforming tab character at (1) [-Wtabs]

Unused variable ‘t2’ declared at (1) [-Wunused-variable]

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Unused variable ‘t0’ declared at (1) [-Wunused-variable]

Unused variable ‘t1’ declared at (1) [-Wunused-variable]

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Unused variable ‘t3’ declared at (1) [-Wunused-variable]

Nonconforming tab character at (1) [-Wtabs]

Nonconforming tab character at (1) [-Wtabs]

Unused variable ‘t2’ declared at (1) [-Wunused-variable]

Unused variable ‘t3’ declared at (1) [-Wunused-variable]

Unused variable ‘t4’ declared at (1) [-Wunused-variable]

Unused variable ‘t5’ declared at (1) [-Wunused-variable]

Unused variable ‘t0’ declared at (1) [-Wunused-variable]

Unused variable ‘t1’ declared at (1) [-Wunused-variable]

Unused variable ‘t2’ declared at (1) [-Wunused-variable]

Unused variable ‘t3’ declared at (1) [-Wunused-variable]

No files were found with the provided path: check. No artifacts will be uploaded.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.