TARGET_SEQ_1CM8_A.needle

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# Program: needle
# Rundate: Thu 25 Oct 2018 13:00:04
# Commandline: needle
#    -sid1 TARGET_SEQ
#    -asequence TARGET_SEQ.fasta
#    -sid2 1CM8_A
#    -bsequence /Users/kirubapalani/Desktop/git_hub_tutorial/pdb_sequeuce_fasta/1CM8_A.fasta
#    -gapopen 10.0
#    -gapextend 0.5
#    -aformat3 markx3
#    -outfile TARGET_SEQ_1CM8_A.needle
# Align_format: markx3
# Report_file: TARGET_SEQ_1CM8_A.needle
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#=======================================
#
# Aligned_sequences: 2
# 1: TARGET_SEQ
# 2: 1CM8_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 356
# Identity:     108/356 (30.3%)
# Similarity:   157/356 (44.1%)
# Gaps:          90/356 (25.3%)
# Score: 446.0
# 
#
#=======================================

>TARGET_SEQ ..
-------------------MENFQKVEKIGEGTYGVVYKARNKLTGEVVA
LKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKL-----
-YLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLH
RDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYHEVVTLWYRAPEILLG
CKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTP----
------DEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQM
LHYDPNKRISAKAALAHPFFQDVTKPVPHL--------------------
------
>1CM8_A ..
RSGFYRQEVTKTAWEVRAVYRDLQPV---------AVCSAVDGRTGAKVA
IKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTD
FYLVMPFMGTDLGKLMKHEKLGE---DRIQFLVYQMLKGLRYIHAAGIIH
RDLKPGNLAVNEDCELKILDFGLAR----QADSEMGVVTRWYRAPEVILN
WMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEF
VQRLQSDEA--------KNYMKGLPELEKKDFASILTNASPLAVNLLEKM
LVLDAEQRVTAGEALAHPYFESL-----HQVQKYDDSRTLDEWKRVTYKE
VLSFKP

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