From 1c13750067d6c5844734c8727cae2471060e79d8 Mon Sep 17 00:00:00 2001
From: GaziYucel <84437883+GaziYucel@users.noreply.github.com>
Date: Thu, 10 Apr 2025 15:53:29 +0200
Subject: [PATCH] structured citations (development)

---
 CrossrefReferenceLinkingPlugin.php | 10 +++-------
 1 file changed, 3 insertions(+), 7 deletions(-)

diff --git a/CrossrefReferenceLinkingPlugin.php b/CrossrefReferenceLinkingPlugin.php
index fa6f8f7..c833dbf 100644
--- a/CrossrefReferenceLinkingPlugin.php
+++ b/CrossrefReferenceLinkingPlugin.php
@@ -22,10 +22,8 @@
 use Citation;
 use Doi;
 use DOMDocument;
-use PKP\citation\CitationDAO;
 use PKP\context\Context;
 use PKP\core\JSONMessage;
-use PKP\db\DAORegistry;
 use PKP\linkAction\LinkAction;
 use PKP\linkAction\request\AjaxModal;
 use PKP\plugins\GenericPlugin;
@@ -56,7 +54,6 @@ public function register($category, $path, $mainContextId = null): bool
 
         // Additional fields added
         Hook::add('Schema::get::submission', [$this, 'addSubmissionSchema']);
-        Hook::add('citationdao::getAdditionalFieldNames', [$this, 'getAdditionalCitationFieldNames']);
 
         if (!$this->getEnabled($mainContextId)) {
             return true;
@@ -345,11 +342,10 @@ public function considerFoundCrossrefReferencesDOIs(Publication $publication): v
             return;
         }
 
-        $citationDao = DAORegistry::getDAO('CitationDAO'); /** @var CitationDAO $citationDao */
-        $citations = $publication->getData('citations') ?? [];
+        $citations = Repo::citation()->getByPublicationId($publication->getId());
 
         $citationsToCheck = [];
-        foreach ($citations as $citation) { /** @var Citation $citation */
+        foreach ($citations as $citation) {
             if (!$citation->getData($this->getCitationDoiSettingName())) {
                 $citationsToCheck[$citation->getId()] = $citation;
             }
@@ -372,7 +368,7 @@ public function considerFoundCrossrefReferencesDOIs(Publication $publication): v
             foreach ($filteredMatchedReferences as $matchedReference) {
                 $citation = $citationsToCheck[$matchedReference['key']];
                 $citation->setData($this->getCitationDoiSettingName(), $matchedReference['doi']);
-                $citationDao->updateObject($citation);
+                Repo::citation()->edit($citation, []);
             }
 
             // remove auto check setting