diff --git a/_data/display_as.yml b/_data/display_as.yml index e49e0c4cb..74d89ff02 100644 --- a/_data/display_as.yml +++ b/_data/display_as.yml @@ -22,6 +22,9 @@ statistical: ai_ml: reference: '#ai-ml' text: Artificial Intelligence and Machine Learning +bio: + reference: '#bio' + text: Bioinformatics scientific: reference: '#scientific-charts' text: Scientific diff --git a/_includes/layouts/side-bar.html b/_includes/layouts/side-bar.html index 0c00dbbc0..34b469cc8 100644 --- a/_includes/layouts/side-bar.html +++ b/_includes/layouts/side-bar.html @@ -41,6 +41,8 @@ {% assign 3d_charts = true %} {% elsif page.display_as == "ai_ml" %} {% assign ai_ml = true %} +{% elsif page.display_as == "bio" %} +{% assign bio = true %} {% elsif page.display_as == "advanced_charts"%} {% assign advanced_charts = true %} {% elsif page.display_as == "multiple_axes" %} @@ -268,6 +270,12 @@ {% endif %} + {% if bio == true %} +
  • + Visualizing Biological Data +
    • + {% endif %} + {% if scientific == true %}
  • Scientific diff --git a/_includes/posts/documentation_eg.html b/_includes/posts/documentation_eg.html index f3ae0fc86..6147523d4 100644 --- a/_includes/posts/documentation_eg.html +++ b/_includes/posts/documentation_eg.html @@ -40,6 +40,8 @@ {% assign advanced_opt = true %} {% elsif page.display_as == "ai_ml" %} {% assign ai_ml = true %} +{% elsif page.display_as == "bio" %} +{% assign bio = true %} {% elsif page.display_as == "aesthetics" %} @@ -140,6 +142,31 @@ {% endif %} +{% if bio %} +
    +
    + {% if show_header %} + + Bio + + {% endif %} + +
    +
    +
      + {%- for page in languagelist -%} + {% if page.display_as == "bio" %} + + {% include layouts/grid-item.html %} + + + {% endif %} + {%- endfor -%} +
    +
    +
    +{% endif %} + {% if chart_type %}
    diff --git a/_posts/python/2021-10-01-bio-index.html b/_posts/python/2021-10-01-bio-index.html new file mode 100644 index 000000000..62fcd186f --- /dev/null +++ b/_posts/python/2021-10-01-bio-index.html @@ -0,0 +1,28 @@ +--- +permalink: python/bio/ +description: Dash Bio is a suite of bioinformatics components that make it simple to analyze, visualize, and interact with bioinformatics data in a Dash application. +name: Visualizing Biological Data +layout: langindex +language: python +display_as: bio +thumbnail: thumbnail/mixed.jpg +page_type: example_index +--- + + +
    +
    + +
    +
    +

    Plotly Python Open Source Graphing Library Visualizing Biological Data

    +

    {{page.description}}


    + {% include layouts/dashplug.html %} +
    +
    +
    +
    + + + {% assign languagelist = site.posts | where: "language","python" | where: "display_as","bio" | where: "layout","base" | sort: "order" %} + {% include posts/documentation_eg.html %} diff --git a/all_static/images/alignment_chart.png b/all_static/images/alignment_chart.png new file mode 100644 index 000000000..536275529 Binary files /dev/null and b/all_static/images/alignment_chart.png differ diff --git a/all_static/images/circos.png b/all_static/images/circos.png new file mode 100644 index 000000000..7264af96b Binary files /dev/null and b/all_static/images/circos.png differ diff --git a/all_static/images/clustergram.png b/all_static/images/clustergram.png new file mode 100644 index 000000000..a67ecf396 Binary files /dev/null and b/all_static/images/clustergram.png differ diff --git a/all_static/images/molecule_3d_viewer.png b/all_static/images/molecule_3d_viewer.png new file mode 100644 index 000000000..0a88648e2 Binary files /dev/null and b/all_static/images/molecule_3d_viewer.png differ diff --git a/all_static/images/volcano_plot.png b/all_static/images/volcano_plot.png new file mode 100644 index 000000000..21f388f29 Binary files /dev/null and b/all_static/images/volcano_plot.png differ