bio-manhattanplot.md

jupyter

celltoolbar jupytext kernelspec language_info plotly Tags notebook_metadata_filter text_representation all extension format_name format_version jupytext_version .md markdown 1.3 1.13.0 display_name language name Python 3 (ipykernel) python python3 codemirror_mode file_extension mimetype name nbconvert_exporter pygments_lexer version name version ipython 3 .py text/x-python python python ipython3 3.9.7 display_as language layout name order page_type permalink thumbnail bio python base Volcano plot 1 u-guide python/volcano-plot/ thumbnail/volcano-plot.png

Manhattan Plot

An example of a default ManhattanPlot component without any extra properties.

import pandas as pd
import dash_bio as dashbio

df = pd.read_csv('https://raw.githubusercontent.com/plotly/dash-bio-docs-files/master/manhattan_data.csv')


dashbio.ManhattanPlot(
    dataframe=df,
)

Highlighted points color, and colors of the suggestive line and the genome-wide line.

Change the color of the points that are considered significant.

import pandas as pd
import dash_bio as dashbio


df = pd.read_csv('https://raw.githubusercontent.com/plotly/dash-bio-docs-files/master/manhattan_data.csv')

dashbio.ManhattanPlot(
    dataframe=df,
    highlight_color='#00FFAA',
    suggestiveline_color='#AA00AA',
    genomewideline_color='#AA5500'
)

ManhattanPlot with Dash

from IPython.display import IFrame
snippet_url = 'https://dash-gallery.plotly.host/python-docs-dash-snippets/'
IFrame(snippet_url + 'bio-manhattanplot', width='100%', height=630)