Allow micro simulations to pass local data for adaptivity calculation only #1019
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| name: Run unit tests for user-side functions | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - develop | |
| pull_request: | |
| branches: | |
| - "*" | |
| jobs: | |
| unit_tests: | |
| runs-on: ubuntu-latest | |
| container: precice/precice:nightly | |
| steps: | |
| - uses: actions/checkout@v6 | |
| with: | |
| path: micro-manager | |
| - name: Install dependencies | |
| run: | | |
| apt-get -qq update | |
| apt-get -qq install python3-dev python3-venv git pkg-config | |
| apt-get -qq install wget build-essential | |
| - name: Load Cache OpenMPI 5 | |
| id: ompi-cache-load | |
| uses: actions/cache/restore@v5 | |
| with: | |
| path: ~/openmpi | |
| key: openmpi-v5-${{ runner.os }}-build | |
| - name: Build OpenMPI 5 | |
| if: steps.ompi-cache-load.outputs.cache-hit != 'true' | |
| run: | | |
| wget https://download.open-mpi.org/release/open-mpi/v5.0/openmpi-5.0.5.tar.gz | |
| tar -xzf openmpi-5.0.5.tar.gz | |
| cd openmpi-5.0.5 | |
| mkdir -p ~/openmpi | |
| ./configure --prefix=$HOME/openmpi | |
| make -j$(nproc) | |
| make install | |
| - name: Save OpenMPI 5 to cache | |
| if: steps.ompi-cache.outputs.cache-hit != 'true' | |
| id: ompi-cache-store | |
| uses: actions/cache/save@v5 | |
| with: | |
| path: ~/openmpi | |
| key: openmpi-v5-${{ runner.os }}-build | |
| - name: Configure OpenMPI | |
| run: | | |
| cp -r ~/openmpi/* /usr/local/ | |
| ldconfig | |
| which mpiexec | |
| mpiexec --version | |
| - name: Create a virtual environment and install Micro Manager in it | |
| timeout-minutes: 6 | |
| working-directory: micro-manager | |
| run: | | |
| python3 -m venv .venv | |
| . .venv/bin/activate | |
| pip install . | |
| - name: Run micro_manager unit test | |
| working-directory: micro-manager | |
| run: | | |
| . .venv/bin/activate | |
| pip uninstall -y pyprecice | |
| cd tests/unit | |
| python3 -m unittest test_micro_manager.py | |
| - name: Install Micro Manager and run tasking unit test | |
| working-directory: micro-manager | |
| env: | |
| OMPI_ALLOW_RUN_AS_ROOT: "1" | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: "1" | |
| run: | | |
| . .venv/bin/activate | |
| cd tests/unit | |
| python3 -m unittest test_tasking.py | |
| - name: Install Micro Manager and run interpolation unit test | |
| working-directory: micro-manager | |
| run: | | |
| . .venv/bin/activate | |
| pip install .[sklearn] | |
| pip uninstall -y pyprecice | |
| cd tests/unit | |
| python3 -m unittest test_interpolation.py | |
| - name: Install Micro Manager and run micro simulation crash unit test | |
| working-directory: micro-manager | |
| run: | | |
| . .venv/bin/activate | |
| cd tests/unit | |
| python3 -m unittest test_micro_simulation_crash_handling.py | |
| - name: Install Micro Manager and run HDF5 read and write unit tests | |
| working-directory: micro-manager/ | |
| run: | | |
| . .venv/bin/activate | |
| pip install .[snapshot] | |
| pip uninstall -y pyprecice | |
| cd tests/unit | |
| python3 -m unittest test_hdf5_functionality.py | |
| - name: Install Micro Manager and run snapshot_computation unit tests | |
| working-directory: micro-manager | |
| run: | | |
| . .venv/bin/activate | |
| cd tests/unit | |
| python3 -m unittest test_snapshot_computation.py |