micro-manager/.github/workflows/test-unit.yml at develop · precice/micro-manager · GitHub

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name: Run unit tests for user-side functions
on:
  workflow_call:

jobs:
  unit_tests:
    name: Unit
    runs-on: ubuntu-latest
    container: precice/precice:nightly
    steps:
      - uses: actions/checkout@v7
        with:
          path: micro-manager

      - name: Install dependencies
        run: |
          apt-get -qq update
          apt-get -qq install python3-dev python3-venv git pkg-config

      - name: Load Cache OpenMPI 5
        id: ompi-cache-load
        uses: actions/cache/restore@v6
        with:
          path: ~/openmpi
          key: openmpi-5.0.5-${{ runner.os }}-build

      - name: Configure OpenMPI
        run: |
          if [ ! -d ~/openmpi ]; then
            echo "::error::OpenMPI cache not found. The cache workflow may have failed."
            exit 1
          fi
          cp -r ~/openmpi/* /usr/local/
          ldconfig
          which mpiexec
          mpiexec --version

      - name: Create a virtual environment and install Micro Manager in it
        timeout-minutes: 6
        working-directory: micro-manager
        run: |
          python3 -m venv .venv
          . .venv/bin/activate
          pip install .

      - name: Run micro_manager unit test
        working-directory: micro-manager
        run: |
          . .venv/bin/activate
          pip uninstall -y pyprecice
          cd tests/unit
          python3 -m unittest test_micro_manager.py

      - name: Run model adaptivity unit tests
        working-directory: micro-manager
        run: |
          . .venv/bin/activate
          cd tests/unit
          python3 -m unittest test_model_adaptivity.py

      - name: Install Micro Manager and run tasking unit test
        working-directory: micro-manager
        env:
          OMPI_ALLOW_RUN_AS_ROOT: "1"
          OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: "1"
        run: |
          . .venv/bin/activate
          cd tests/unit
          python3 -m unittest test_tasking.py

      - name: Install Micro Manager and run interpolation unit test
        working-directory: micro-manager
        run: |
          . .venv/bin/activate
          pip install .[sklearn]
          pip uninstall -y pyprecice
          cd tests/unit
          python3 -m unittest test_interpolation.py

      - name: Install Micro Manager and run micro simulation crash unit test
        working-directory: micro-manager
        run: |
          . .venv/bin/activate
          cd tests/unit
          python3 -m unittest test_micro_simulation_crash_handling.py

      - name: Install Micro Manager and run HDF5 read and write unit tests
        working-directory: micro-manager/
        run: |
          . .venv/bin/activate
          pip install .[snapshot]
          pip uninstall -y pyprecice
          cd tests/unit
          python3 -m unittest test_hdf5_functionality.py

      - name: Install Micro Manager and run snapshot_computation unit tests
        working-directory: micro-manager
        run: |
          . .venv/bin/activate
          cd tests/unit
          python3 -m unittest test_snapshot_computation.py