add micro manager in docker image

Author: Fujikawas

.github/workflows/system-tests-latest-components.yml

@@ -142,6 +142,7 @@ jobs:
         SU2_ADAPTER_REF:${{ needs.gather-refs.outputs.ref-su2-adapter }},\
         DUNE_VERSION:2.9,\
         DUMUX_VERSION:3.7,\
+        MICRO_MANAGER_VERSION:0.8.0,\
         TUTORIALS_REF:${{ needs.gather-refs.outputs.ref-tutorials }}"
       system_tests_branch: develop
       log_level: "INFO"

tools/tests/component-templates/micro-manager.yaml

@@ -0,0 +1,16 @@
+build:
+  context: {{ dockerfile_context }}
+  args:
+    {% for key, value in build_arguments.items() %}
+      - {{key}}={{value}}
+    {% endfor %}
+  target: micro_manager
+depends_on:
+  prepare:
+    condition: service_completed_successfully
+volumes:
+  - {{ run_directory }}:/runs
+command: >
+  /bin/bash -c "id &&
+  cd '/runs/{{ tutorial_folder }}/{{ case_folder }}' &&
+  {{ run }} | tee system-tests_{{ case_folder }}.log 2>&1"

tools/tests/components.yaml

@@ -192,3 +192,23 @@ dumux-adapter:
     DUMUX_ADAPTER_REF:
       semnantic: Git ref of the dumux adapter to use
       default: "main"
+
+micro-manager:
+  repository: https://github.com/precice/micro-manager
+  template: component-templates/micro-manager.yaml
+  build_arguments:
+    PLATFORM:
+      description: Dockerfile platform used
+      default: "ubuntu_2404"
+    PRECICE_REF:
+      description: Version of preCICE to use
+      default: "main"
+    PRECICE_PRESET:
+      description: CMake preset of preCICE
+      default: "production-audit"
+    TUTORIALS_REF:
+      description: Tutorial git reference to use
+      default: "master"
+    MICRO_MANAGER_VERSION:
+      description: Version of Micro-Manager to use
+      default: "0.8.0"

tools/tests/dockerfiles/ubuntu_2404/Dockerfile

@@ -189,7 +189,22 @@ RUN git clone https://github.com/precice/dealii-adapter.git &&\
     cmake . && \
     make -j $(nproc)
 
-FROM precice_dependecies AS dumux_adapter
+
+FROM precice_dependecies AS micro_manager
+USER root
+WORKDIR /home/precice
+USER precice
+COPY --from=precice /home/precice/.local/ /home/precice/.local/
+
+ARG MICRO_MANAGER_VERSION
+RUN python3 -m venv /home/precice/venv && \
+    . /home/precice/venv/bin/activate && \
+    git clone https://github.com/precice/micro-manager.git && \
+    cd micro-manager && \
+    git checkout ${MICRO_MANAGER_VERSION} && \
+    pip3 install .
+
+FROM micro_manager AS dumux_adapter
 USER root
 COPY --from=precice /home/precice/.local/ /home/precice/.local/
 ARG DUNE_VERSION

tools/tests/reference_versions.yaml

@@ -13,4 +13,5 @@ SU2_ADAPTER_REF: "64d4aff" # Distribution v2404
 DEALII_ADAPTER_REF: "02c5d18" # develop, April 12, 2025
 DUNE_VERSION: "2.9"
 DUMUX_VERSION: "3.7"
-DUMUX_ADAPTER_REF: "3.0.0"
+DUMUX_ADAPTER_REF: "v3.0.0"
+MICRO_MANAGER_VERSION: "v0.8.0"

two-scale-heat-conduction/metadata.yaml

@@ -10,11 +10,11 @@ cases:
   macro-dumux:
     participant: macro-heat
     directory: ./macro-dumux
-    run: ./run.sh
+    run: ./../compile-dumux-cases.sh && ./run.sh
     component: dumux-adapter
 
   micro-dumux:
     participant: Micro-Manager
     directory: ./micro-dumux
-    run: ./run.sh
+    run: ./../compile-dumux-cases.sh && ./run.sh
     component: dumux-adapter