From b8b938dbb9a7c3b093d70e814df09d143e1235b5 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 23 Aug 2021 21:02:18 +0000
Subject: [PATCH] Upgrade: Bump notebook from 6.2.0 to 6.4.1

Bumps [notebook](http://jupyter.org) from 6.2.0 to 6.4.1.

---
updated-dependencies:
- dependency-name: notebook
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock     | 1433 ++++++++++++++++++++++++++--------------------
 requirements.txt |   97 ++--
 2 files changed, 858 insertions(+), 672 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index 20ece82..96d050b 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -18,9 +18,10 @@
     "default": {
         "antimony": {
             "hashes": [
-                "sha256:0991771f587b207f0c18f3b6e33cbea40d78a6659be3f4cad4cb1326ab6ca54f"
+                "sha256:26d425612580c4494386a0361cc886c471f33f274a8e13d10d95a7a1dd060cf7",
+                "sha256:85a6a3ee895fa60447ad8f25db2b3ce22d65e2e08b8e304916870fe672fcbc70"
             ],
-            "version": "==2.12.0.3"
+            "version": "==2.12.0.2"
         },
         "appdirs": {
             "hashes": [
@@ -31,10 +32,11 @@
         },
         "attrs": {
             "hashes": [
-                "sha256:31b2eced602aa8423c2aea9c76a724617ed67cf9513173fd3a4f03e3a929c7e6",
-                "sha256:832aa3cde19744e49938b91fea06d69ecb9e649c93ba974535d08ad92164f700"
+                "sha256:149e90d6d8ac20db7a955ad60cf0e6881a3f20d37096140088356da6c716b0b1",
+                "sha256:ef6aaac3ca6cd92904cdd0d83f629a15f18053ec84e6432106f7a4d04ae4f5fb"
             ],
-            "version": "==20.3.0"
+            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'",
+            "version": "==21.2.0"
         },
         "backcall": {
             "hashes": [
@@ -52,17 +54,18 @@
         },
         "certifi": {
             "hashes": [
-                "sha256:1a4995114262bffbc2413b159f2a1a480c969de6e6eb13ee966d470af86af59c",
-                "sha256:719a74fb9e33b9bd44cc7f3a8d94bc35e4049deebe19ba7d8e108280cfd59830"
+                "sha256:2bbf76fd432960138b3ef6dda3dde0544f27cbf8546c458e60baf371917ba9ee",
+                "sha256:50b1e4f8446b06f41be7dd6338db18e0990601dce795c2b1686458aa7e8fa7d8"
             ],
-            "version": "==2020.12.5"
+            "version": "==2021.5.30"
         },
-        "chardet": {
+        "charset-normalizer": {
             "hashes": [
-                "sha256:0d6f53a15db4120f2b08c94f11e7d93d2c911ee118b6b30a04ec3ee8310179fa",
-                "sha256:f864054d66fd9118f2e67044ac8981a54775ec5b67aed0441892edb553d21da5"
+                "sha256:0c8911edd15d19223366a194a513099a302055a962bca2cec0f54b8b63175d8b",
+                "sha256:f23667ebe1084be45f6ae0538e4a5a865206544097e4e8bbcacf42cd02a348f3"
             ],
-            "version": "==4.0.0"
+            "markers": "python_version >= '3'",
+            "version": "==2.0.4"
         },
         "click": {
             "hashes": [
@@ -81,61 +84,80 @@
         },
         "cython": {
             "hashes": [
-                "sha256:105d813eedf276588a02a240ece2f7bca8235aee9bb48e25293410c3c1ac7230",
-                "sha256:15b2ba47858d7949a036d4ba6e838120bf3c06983769e99d12867a2c8cd0cd91",
-                "sha256:182e78d75515e3d50f31cfde501fbf2af7ee0698e8149f41048db5d3c98ffc8f",
-                "sha256:3ce10572a6b7fd5baa755f11cdf09830ae518e6f837aa38c31ec534b1f874fd4",
-                "sha256:40a87c9ecd0b1b485804c70b16427e88bd07bff9f270d022d872869ff4d6ac6e",
-                "sha256:59c950513c485f1e8da0e04a2a91f71508c5e98b6912ce66588c6aee72d8e4d1",
-                "sha256:5cc5e72a106d7abc12b6e58883c914bce0b2031df6035014094a15593052db12",
-                "sha256:6609babc68d37bb92a1b85ebd867405f720aeb2a6af946f6bd7f71b22dbb91cf",
-                "sha256:667b169c89c4b8eb79d35822508ed8d77b9421af085142fad20bfef775a295d2",
-                "sha256:7265abb33f154663a052c47213b978ec703f89a938bca38f425f25d4e8ba2211",
-                "sha256:761b965b5abcea072ba642dbb740e44532bc88618f34b605c05de1d6088b1cdd",
-                "sha256:88bebb8803adac0b64426fd261752925e8bf301b1986078e9506670bcbb5307f",
-                "sha256:92c028e0d4ac9e32b2cf6c970f7f6c5c3aaa87f011798201ef56746705a8f01a",
-                "sha256:97511722515b66851d3f77d64b1970a97e5114c4007efd5a0a307936e156a24c",
-                "sha256:a6f5bf7fece95dd62ba13a9edb7d3ecc1a9097e6f0fde78c5fad763163157472",
-                "sha256:a8aee32da407f215652959fc6568277cfd35a24714a5238c8a9778bf34d91ace",
-                "sha256:ab4c34d8693a62f1b8261a131784a3db397ceaa03ea90a5799574623acaa2c2c",
-                "sha256:af646d37e23fc3ba217c587096fac4e57006d8173d2a2365763287071e0eec2d",
-                "sha256:b53c9d7b545c70f462408000affdd330cb87d05f83a58a9ccd72d19c8df80d56",
-                "sha256:ba7f34e07ca0d1ce4ba8d9e3da6d2eb0b1ac6cb9896d2c821b28a9ac9504bcfe",
-                "sha256:bbc48be45ee9eba2d0268bf616220cfb46d998ad85524f3cf752d55eb6dd3379",
-                "sha256:c4f2c8cceffd8403468b542570826174564fe2c6549dd199a75c13720add4981",
-                "sha256:d73a4851d1dbdcc70e619ccb104877d5e523d0fc5aef6fb6fbba4344c1f60cae",
-                "sha256:d76feb00f754d86e6d48f39b59a4e9a8fcfed1e6e3e433d18e3677ff19ff2911",
-                "sha256:dc42b78b62815abea19a37d186011cca57f72ec509f56fa6c43a71b2e8c6a24f",
-                "sha256:df6b83c7a6d1d967ea89a2903e4a931377634a297459652e4551734c48195406",
-                "sha256:e8c84ad389b3f36433e1be88dd7a1e36db4ab5b4848f5899cbd0a1cdc443b925",
-                "sha256:f5f57b2e13cc3aa95526145ffa551df529f04bf5d137c59350e7accff9362dc0",
-                "sha256:f7064df99094b4fd09c9ebcca6c94a652fac04c7dce514a4f2ab6ce23fcd0ba4",
-                "sha256:f89c19480d137026f04a34cbd54ab0fb328b29005c91d3a36d06b9c4710152c1",
-                "sha256:fedecbd2ad6535e30dd3b43ca9b493a1930d5167257a3fb60687bd425f6fdc54"
-            ],
-            "version": "==0.29.22"
+                "sha256:09ac3087ac7a3d489ebcb3fb8402e00c13d1a3a1c6bc73fd3b0d756a3e341e79",
+                "sha256:0a142c6b862e6ed6b02209d543062c038c110585b5e32d1ad7c9717af4f07e41",
+                "sha256:0d414458cb22f8a90d64260da6dace5d5fcebde43f31be52ca51f818c46db8cb",
+                "sha256:10cb3def9774fa99e4583617a5616874aed3255dc241fd1f4a3c2978c78e1c53",
+                "sha256:112efa54a58293a4fb0acf0dd8e5b3736e95b595eee24dd88615648e445abe41",
+                "sha256:166f9f29cd0058ce1a14a7b3a2458b849ed34b1ec5fd4108af3fdd2c24afcbb0",
+                "sha256:2d9e61ed1056a3b6a4b9156b62297ad18b357a7948e57a2f49b061217696567e",
+                "sha256:2f41ef7edd76dd23315925e003f0c58c8585f3ab24be6885c4b3f60e77c82746",
+                "sha256:37bcfa5df2a3009f49624695d917c3804fccbdfcdc5eda6378754a879711a4d5",
+                "sha256:416046a98255eff97ec02077d20ebeaae52682dfca1c35aadf31260442b92514",
+                "sha256:4cf4452f0e4d50e11701bca38f3857fe6fa16593e7fd6a4d5f7be66f611b7da2",
+                "sha256:55b0ee28c2c8118bfb3ad9b25cf7a6cbd724e442ea96956e32ccd908d5e3e043",
+                "sha256:5dd56d0be50073f0e54825a8bc3393852de0eed126339ecbca0ae149dba55cfc",
+                "sha256:5fa12ebafc2f688ea6d26ab6d1d2e634a9872509ba7135b902bb0d8b368fb04b",
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+                "sha256:661dbdea519d9cfb288867252b75fef73ffa8e8bb674cec27acf70646afb369b",
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+                "sha256:6ade74eece909fd3a437d9a5084829180751d7ade118e281e9824dd75eafaff2",
+                "sha256:73ac33a4379056a02031baa4def255717fadb9181b5ac2b244792d53eae1c925",
+                "sha256:76cbca0188d278e93d12ebdaf5990678e6e436485fdfad49dbe9b07717d41a3c",
+                "sha256:774cb8fd931ee1ba52c472bc1c19077cd6895c1b24014ae07bb27df59aed5ebe",
+                "sha256:821c2d416ad7d006b069657ee1034c0e0cb45bdbe9ab6ab631e8c495dfcfa4ac",
+                "sha256:84826ec1c11cda56261a252ddecac0c7d6b02e47e81b94f40b27b4c23c29c17c",
+                "sha256:854fe2193d3ad4c8b61932ff54d6dbe10c5fa8749eb8958d72cc0ab28243f833",
+                "sha256:88dc3c250dec280b0489a83950b15809762e27232f4799b1b8d0bad503f5ab84",
+                "sha256:8cb87777e82d1996aef6c146560a19270684271c9c669ba62ac6803b3cd2ff82",
+                "sha256:91339ee4b465924a3ea4b2a9cec7f7227bc4cadf673ce859d24c2b9ef60b1214",
+                "sha256:9164aeef1af6f837e4fc20402a31d256188ba4d535e262c6cb78caf57ad744f8",
+                "sha256:a102cfa795c6b3b81a29bdb9dbec545367cd7f353c03e6f30a056fdfefd92854",
+                "sha256:ad43e684ade673565f6f9d6638015112f6c7f11aa2a632167b79014f613f0f5f",
+                "sha256:afb521523cb46ddaa8d269b421f88ea2731fee05e65b952b96d4db760f5a2a1c",
+                "sha256:b28f92e617f540d3f21f8fd479a9c6491be920ffff672a4c61b7fc4d7f749f39",
+                "sha256:bc05de569f811be1fcfde6756c9048ae518f0c4b6d9f8f024752c5365d934cac",
+                "sha256:cdf04d07c3600860e8c2ebaad4e8f52ac3feb212453c1764a49ac08c827e8443",
+                "sha256:d8d1a087f35e39384303f5e6b75d465d6f29d746d7138eae9d3b6e8e6f769eae",
+                "sha256:eb2843f8cc01c645725e6fc690a84e99cdb266ce8ebe427cf3a680ff09f876aa",
+                "sha256:f2e9381497b12e8f622af620bde0d1d094035d79b899abb2ddd3a7891f535083",
+                "sha256:f96411f0120b5cae483923aaacd2872af8709be4b46522daedc32f051d778385"
+            ],
+            "markers": "python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3'",
+            "version": "==0.29.24"
         },
         "decorator": {
             "hashes": [
-                "sha256:41fa54c2a0cc4ba648be4fd43cff00aedf5b9465c9bf18d64325bc225f08f760",
-                "sha256:e3a62f0520172440ca0dcc823749319382e377f37f140a0b99ef45fecb84bfe7"
+                "sha256:6e5c199c16f7a9f0e3a61a4a54b3d27e7dad0dbdde92b944426cb20914376323",
+                "sha256:72ecfba4320a893c53f9706bebb2d55c270c1e51a28789361aa93e4a21319ed5"
+            ],
+            "markers": "python_version >= '3.5'",
+            "version": "==5.0.9"
+        },
+        "entrypoints": {
+            "hashes": [
+                "sha256:589f874b313739ad35be6e0cd7efde2a4e9b6fea91edcc34e58ecbb8dbe56d19",
+                "sha256:c70dd71abe5a8c85e55e12c19bd91ccfeec11a6e99044204511f9ed547d48451"
             ],
-            "version": "==4.4.2"
+            "markers": "python_version >= '2.7'",
+            "version": "==0.3"
         },
         "idna": {
             "hashes": [
-                "sha256:b307872f855b18632ce0c21c5e45be78c0ea7ae4c15c828c20788b26921eb3f6",
-                "sha256:b97d804b1e9b523befed77c48dacec60e6dcb0b5391d57af6a65a312a90648c0"
+                "sha256:14475042e284991034cb48e06f6851428fb14c4dc953acd9be9a5e95c7b6dd7a",
+                "sha256:467fbad99067910785144ce333826c71fb0e63a425657295239737f7ecd125f3"
             ],
-            "version": "==2.10"
+            "markers": "python_version >= '3'",
+            "version": "==3.2"
         },
         "importlib-metadata": {
             "hashes": [
-                "sha256:742add720a20d0467df2f444ae41704000f50e1234f46174b51f9c6031a1bd71",
-                "sha256:b74159469b464a99cb8cc3e21973e4d96e05d3024d337313fedb618a6e86e6f4"
+                "sha256:7b30a78db2922d78a6f47fb30683156a14f3c6aa5cc23f77cc8967e9ab2d002f",
+                "sha256:ed5157fef23a4bc4594615a0dd8eba94b2bb36bf2a343fa3d8bb2fa0a62a99d5"
             ],
             "markers": "python_version < '3.8'",
-            "version": "==3.7.3"
+            "version": "==4.6.4"
         },
         "iniconfig": {
             "hashes": [
@@ -146,16 +168,18 @@
         },
         "ipykernel": {
             "hashes": [
-                "sha256:98321abefdf0505fb3dc7601f60fc4087364d394bd8fad53107eb1adee9ff475",
-                "sha256:efd07253b54d84d26e0878d268c8c3a41582a18750da633c2febfd2ece0d467d"
+                "sha256:29eee66548ee7c2edb7941de60c0ccf0a7a8dd957341db0a49c5e8e6a0fcb712",
+                "sha256:e976751336b51082a89fc2099fb7f96ef20f535837c398df6eab1283c2070884"
             ],
-            "version": "==5.5.0"
+            "markers": "python_version >= '3.5'",
+            "version": "==5.5.5"
         },
         "ipython": {
             "hashes": [
                 "sha256:2dbcc8c27ca7d3cfe4fcdff7f45b27f9a8d3edfa70ff8024a71c7a8eb5f09d64",
                 "sha256:9f4fcb31d3b2c533333893b9172264e4821c1ac91839500f31bd43f2c59b3ccf"
             ],
+            "markers": "python_version >= '3.6'",
             "version": "==7.16.1"
         },
         "ipython-genutils": {
@@ -170,27 +194,31 @@
                 "sha256:18456d83f65f400ab0c2d3319e48520420ef43b23a086fdc05dff34132f0fb93",
                 "sha256:92550a404bad8afed881a137ec9a461fed49eca661414be45059329614ed0707"
             ],
+            "markers": "python_version >= '3.6'",
             "version": "==0.18.0"
         },
         "jinja2": {
             "hashes": [
-                "sha256:03e47ad063331dd6a3f04a43eddca8a966a26ba0c5b7207a9a9e4e08f1b29419",
-                "sha256:a6d58433de0ae800347cab1fa3043cebbabe8baa9d29e668f1c768cb87a333c6"
+                "sha256:1f06f2da51e7b56b8f238affdd6b4e2c61e39598a378cc49345bc1bd42a978a4",
+                "sha256:703f484b47a6af502e743c9122595cc812b0271f661722403114f71a79d0f5a4"
             ],
-            "version": "==2.11.3"
+            "markers": "python_version >= '3.6'",
+            "version": "==3.0.1"
         },
         "jupyter-client": {
             "hashes": [
-                "sha256:c4bca1d0846186ca8be97f4d2fa6d2bae889cce4892a167ffa1ba6bd1f73e782",
-                "sha256:e053a2c44b6fa597feebe2b3ecb5eea3e03d1d91cc94351a52931ee1426aecfc"
+                "sha256:07b9566979546004c089afe7c9bf9e96224ec5f8421fe0ae460759fa593c6b1d",
+                "sha256:48822a93d9d75daa5fde235c35cf7a92fc979384735962501d4eb60b197fb43a"
             ],
-            "version": "==6.1.12"
+            "markers": "python_full_version >= '3.6.1'",
+            "version": "==7.0.1"
         },
         "jupyter-core": {
             "hashes": [
                 "sha256:79025cb3225efcd36847d0840f3fc672c0abd7afd0de83ba8a1d3837619122b4",
                 "sha256:8c6c0cac5c1b563622ad49321d5ec47017bd18b94facb381c6973a0486395f8e"
             ],
+            "markers": "python_version >= '3.6'",
             "version": "==4.7.1"
         },
         "kiwisolver": {
@@ -228,6 +256,7 @@
                 "sha256:f8d6f8db88049a699817fd9178782867bf22283e3813064302ac59f61d95be05",
                 "sha256:fd34fbbfbc40628200730bc1febe30631347103fc8d3d4fa012c21ab9c11eca9"
             ],
+            "markers": "python_version >= '3.6'",
             "version": "==1.3.1"
         },
         "libroadrunner": {
@@ -249,60 +278,63 @@
         },
         "markupsafe": {
             "hashes": [
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-                "sha256:22c178a091fc6630d0d045bdb5992d2dfe14e3259760e713c490da5323866c39",
-                "sha256:24982cc2533820871eba85ba648cd53d8623687ff11cbb805be4ff7b4c971aff",
-                "sha256:29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b",
-                "sha256:2beec1e0de6924ea551859edb9e7679da6e4870d32cb766240ce17e0a0ba2014",
-                "sha256:3b8a6499709d29c2e2399569d96719a1b21dcd94410a586a18526b143ec8470f",
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-                "sha256:46c99d2de99945ec5cb54f23c8cd5689f6d7177305ebff350a58ce5f8de1669e",
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-                "sha256:535f6fc4d397c1563d08b88e485c3496cf5784e927af890fb3c3aac7f933ec66",
-                "sha256:596510de112c685489095da617b5bcbbac7dd6384aeebeda4df6025d0256a81b",
-                "sha256:62fe6c95e3ec8a7fad637b7f3d372c15ec1caa01ab47926cfdf7a75b40e0eac1",
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+            "markers": "python_version >= '3.6'",
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@@ -332,8 +364,17 @@
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@@ -371,14 +412,16 @@
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@@ -407,14 +450,16 @@
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@@ -450,63 +495,72 @@
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@@ -520,102 +574,108 @@
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@@ -654,37 +714,39 @@
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@@ -695,53 +757,54 @@
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@@ -786,6 +849,7 @@
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@@ -798,10 +862,11 @@
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@@ -810,11 +875,20 @@
             "index": "pypi",
             "version": "==2.2.0"
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@@ -861,6 +935,7 @@
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@@ -872,19 +947,20 @@
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-            "version": "==3.7.4.3"
+            "version": "==3.10.0.0"
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         "urllib3": {
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         "wcwidth": {
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@@ -895,10 +971,11 @@
         },
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-            "version": "==3.4.1"
+            "markers": "python_version >= '3.6'",
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     "develop": {
@@ -914,16 +991,20 @@
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@@ -937,6 +1018,7 @@
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@@ -944,14 +1026,16 @@
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@@ -960,6 +1044,14 @@
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@@ -970,59 +1062,69 @@
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@@ -1034,30 +1136,33 @@
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@@ -1077,39 +1182,42 @@
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@@ -1328,52 +1444,58 @@
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@@ -1383,10 +1505,11 @@
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@@ -1403,11 +1526,20 @@
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@@ -1420,17 +1552,19 @@
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@@ -1444,6 +1578,7 @@
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@@ -1451,6 +1586,7 @@
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@@ -1458,14 +1594,16 @@
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@@ -1480,20 +1618,43 @@
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@@ -1542,92 +1703,105 @@
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-                "sha256:5e1636b94c7f1f59a8ead4c8a7bab1b12cc52d4c21ababa295ffec56b445fd2a",
-                "sha256:7333e8bc45ea28c74ae26157eacaed5e5629dbada32e0103c23eb368f93af108",
-                "sha256:84b1dca0d53b0a8d58835f72ea2894e4d6cf7a5dd8f520ab4cbd698c81e49737",
-                "sha256:91396a585ba51f84dc71c8da60cdc86de6b60ba0272c389b6482020a1fac9394",
-                "sha256:a214ba5a21dad71a43c0f5aef917cd56a2d70bc974d845be211c66b6742a471c",
-                "sha256:aad6d92f4d71e37ea70e966500f1951ecd065edca3a70d3861b37b176dd6702c",
-                "sha256:b3a6dcc660220539aa718bcc9dbd6dedf2a01d19c875d1033f028f212e36d6bb",
-                "sha256:b5c70704962cf93ec6ea3271a47d952b75ae1980d6c56b8496cec2a722075939",
-                "sha256:c615a9e9e378a7383b756b7e7a73c38b22aeb8967a8bfbffd4741f7ffd043c4d",
-                "sha256:d3a87888c40b5bfcf69b4030427cd666893e826e82cc8608d1ba8b4b5e04ea99",
-                "sha256:e2cadeb0ddc98e3963bea266cc5b884e5d77d73adf807f0bda9eca64d1c509d5",
-                "sha256:e390df0dcc7897ffb98e17eae1f4c442c39c91814c298ad84d935a3c5c7a32fa",
-                "sha256:e6e90330670c78e727d6637bb5a215d3e093d8e3570d439fd4922942f88da361",
-                "sha256:eb6b25a7670c7537a5998e695fa62ff13c7f9c33faf82927adf4daa460d5f62e",
-                "sha256:f273a875c0b42c2a019c337631bc1907f6fdfbc84210cc0d1fff0e2019bbfaec",
-                "sha256:f8aded54c2bc554ce20b397f72101737dd61ee7b81c771684a7dd7805e6cca0c",
-                "sha256:fc51e545d65689c398161f07fd405104956ec27f22453de85898fa088b2cd4bb"
-            ],
-            "markers": "python_version > '3'",
-            "version": "==4.0.2"
+                "sha256:117855246a9ea3f61f3b69e5ca1b1d11d622b3126f50a0ec08b577cb5c87e56e",
+                "sha256:148680f2bc6e52f71c56908b65f59b36a13611ac2f75a86f2cb2bce2b2c2588c",
+                "sha256:1fb2455e62f20ab4a6d49f78b5dc4ff99c72fdab9466e761120e9757fa35f4d7",
+                "sha256:2251fc9395ba4498cbdc48136a179b8f20914fa8b815aa9453b20b48ad120f43",
+                "sha256:22b63ec4409f0d2f2c4c9d5aa331997e02470b7a15a3233f3cc32f2f9b92d58c",
+                "sha256:41b7e5422184249b5b94d1571206f76e5d91e8d721ce51abe341a88f41dd6692",
+                "sha256:44993136fd2ecade747b6db95917e4f015a3279e09a08113f70cbbd0d241e66a",
+                "sha256:44db30b8fc52e70a6f67def11804f74818addafef0a65cd7f0abb98b7830920f",
+                "sha256:807bb0585f30a650ec981669827721ed3ee1ee24f2c6f333a64982a40eb66b82",
+                "sha256:81a49dbf176ae041fc86d2da564f5b9b46faf657306035632da56ecfd7203193",
+                "sha256:8e8fe9bbeca130debb10eea7910433a0714c8efc057fad36353feccb87c1d07f",
+                "sha256:9005d0d952d0c1b3dff5cdb79df2bde35a3499e2de3f708a22c45bbb4089a1f6",
+                "sha256:971d4b450e689bfec8ad6b22060fb9b9bec1e0860dbdf0fa7cfe4068adbc5f58",
+                "sha256:989bed422e7e20c7ba740a4e1bbeb28b3b6324e04f023ea238a2e5449fc53668",
+                "sha256:9e962df227fd1d851ff095382a9f8432c2470c3ee640f02ae14231dc5728e6f3",
+                "sha256:a873c93d43f9bd14d9e9a6d2c6eb7aae4aad9717fe40c748d0cd4b6ed7767c62",
+                "sha256:be6013cda610c5149fb80a84ee815b210aa2e7fe4edf1d2bce42c02336715208",
+                "sha256:d1c2fb32976982e4e75ca0843a1e7b2254b8c5d8c45d979ebf2db29305b4fa31",
+                "sha256:d2955dd5cce0e76ba56786d647aaedca2cebb75eda9f0ec1787110c3646751a8",
+                "sha256:f135db442e5470d9065536745968efc42a60233311c8509b9327bcd59a8821c7",
+                "sha256:f453480b275192ae40ef350a4e8288977f00b02e504ed34245ebd12d633620cb"
+            ],
+            "markers": "python_version >= '3.1'",
+            "version": "==4.1.0"
         },
         "virtualenv": {
             "hashes": [
-                "sha256:49ec4eb4c224c6f7dd81bb6d0a28a09ecae5894f4e593c89b0db0885f565a107",
-                "sha256:83f95875d382c7abafe06bd2a4cdd1b363e1bb77e02f155ebe8ac082a916b37c"
+                "sha256:9ef4e8ee4710826e98ff3075c9a4739e2cb1040de6a2a8d35db0055840dc96a0",
+                "sha256:e4670891b3a03eb071748c569a87cceaefbf643c5bac46d996c5a45c34aa0f06"
             ],
-            "version": "==20.4.3"
+            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'",
+            "version": "==20.7.2"
         },
         "wcwidth": {
             "hashes": [
@@ -1791,10 +1967,11 @@
         },
         "zipp": {
             "hashes": [
-                "sha256:3607921face881ba3e026887d8150cca609d517579abe052ac81fc5aeffdbd76",
-                "sha256:51cb66cc54621609dd593d1787f286ee42a5c0adbb4b29abea5a63edc3e03098"
+                "sha256:957cfda87797e389580cb8b9e3870841ca991e2125350677b2ca83a0e99390a3",
+                "sha256:f5812b1e007e48cff63449a5e9f4e7ebea716b4111f9c4f9a645f91d579bf0c4"
             ],
-            "version": "==3.4.1"
+            "markers": "python_version >= '3.6'",
+            "version": "==3.5.0"
         }
     }
 }
diff --git a/requirements.txt b/requirements.txt
index 63a2770..bd97427 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,64 +1,73 @@
+#
+# These requirements were autogenerated by pipenv
+# To regenerate from the project's Pipfile, run:
+#
+#    pipenv lock --requirements
+#
+
 -i https://pypi.org/simple/
-antimony==2.12.0.3
+antimony==2.12.0.2
 appdirs==1.4.4
-attrs==20.3.0
+attrs==21.2.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'
 backcall==0.2.0
 cayenne==1.0.3
-certifi==2020.12.5
-chardet==4.0.0
+certifi==2021.5.30
+charset-normalizer==2.0.4; python_version >= '3'
 click==7.1.2
 cycler==0.10.0
-cython==0.29.22
-decorator==4.4.2
-idna==2.10
-importlib-metadata==3.7.3 ; python_version < '3.8'
+cython==0.29.24; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3'
+decorator==5.0.9; python_version >= '3.5'
+entrypoints==0.3; python_version >= '2.7'
+idna==3.2; python_version >= '3'
+importlib-metadata==4.6.4; python_version < '3.8'
 iniconfig==1.1.1
-ipykernel==5.5.0
+ipykernel==5.5.5; python_version >= '3.5'
 ipython-genutils==0.2.0
-ipython==7.16.1
-jedi==0.18.0
-jinja2==2.11.3
-jupyter-client==6.1.12
-jupyter-core==4.7.1
-kiwisolver==1.3.1
+ipython==7.16.1; python_version >= '3.6'
+jedi==0.18.0; python_version >= '3.6'
+jinja2==3.0.1; python_version >= '3.6'
+jupyter-client==7.0.1; python_full_version >= '3.6.1'
+jupyter-core==4.7.1; python_version >= '3.6'
+kiwisolver==1.3.1; python_version >= '3.6'
 libroadrunner==2.0.5
-markupsafe==1.1.1
-matplotlib==3.3.4
-numpy==1.19.3
-packaging==20.9
-pandas==1.1.5
-parso==0.8.1
-pexpect==4.8.0 ; sys_platform != 'win32'
+markupsafe==2.0.1; python_version >= '3.6'
+matplotlib==3.3.4; python_version >= '3.6'
+nest-asyncio==1.5.1; python_version >= '3.5'
+numpy==1.19.3; python_version >= '3.6'
+packaging==21.0; python_version >= '3.6'
+pandas==1.1.5; python_full_version >= '3.6.1'
+parso==0.8.2; python_version >= '3.6'
+pexpect==4.8.0; sys_platform != 'win32'
 phrasedml==1.1.1
 pickleshare==0.7.5
-pillow==8.1.1
-plotly==4.14.3
-pluggy==0.13.1
-prompt-toolkit==3.0.17
+pillow==8.3.1; python_version >= '3.6'
+plotly==5.2.2; python_version >= '3.6'
+pluggy==0.13.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'
+prompt-toolkit==3.0.20; python_full_version >= '3.6.2'
 ptyprocess==0.7.0
-py==1.10.0
-pygments==2.8.1
-pyparsing==2.4.7
-pytest==6.2.2
-python-dateutil==2.8.1
-python-libcombine==0.2.10
-python-libnuml==1.1.3
+py==1.10.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'
+pygments==2.10.0; python_version >= '3.5'
+pyparsing==2.4.7; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3'
+pytest==6.2.4; python_version >= '3.6'
+python-dateutil==2.8.2; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'
+python-libcombine==0.2.13
+python-libnuml==1.1.4
 python-libsbml==5.19.0
-python-libsedml==2.0.15
+python-libsedml==2.0.25
 pytz==2021.1
-pyzmq==22.0.3
-requests==2.25.1
-retrying==1.3.3
+pyzmq==22.2.1; python_version >= '3.6'
+requests==2.26.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4, 3.5'
 rrplugins==2.0.5
 sbml2matlab==1.2.3.1
-scipy==1.5.4
+scipy==1.5.4; python_version >= '3.6'
 seaborn==0.11.1
-six==1.15.0
+six==1.16.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'
 tellurium==2.2.0
-toml==0.10.2
-tornado==6.1
+tenacity==8.0.1; python_version >= '3.6'
+toml==0.10.2; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3'
+tornado==6.1; python_version >= '3.5'
 traitlets==4.3.3
-typing-extensions==3.7.4.3 ; python_version < '3.8'
-urllib3==1.26.4
+typing-extensions==3.10.0.0; python_version < '3.8'
+urllib3==1.26.6; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' and python_version < '4'
 wcwidth==0.2.5
-zipp==3.4.1
+zipp==3.5.0; python_version >= '3.6'