From 486ae216896a9e1fc2ce31fdc7533e0c226c1622 Mon Sep 17 00:00:00 2001
From: Xun <xun468@yahoo.com>
Date: Tue, 13 Dec 2016 10:38:56 +0100
Subject: [PATCH] Moved into correct folder, added README and xml2struct
 Liscense

---
 matlab/Greedy/MatlabGreedy.m |   102 +
 matlab/Greedy/README.txt     |     6 +
 matlab/Greedy/bier127.xml    | 16273 +++++++++++++++++++++++++++++++++
 matlab/Greedy/license.txt    |    24 +
 matlab/Greedy/ulysses16.xml  |   289 +
 matlab/Greedy/ulysses22.xml  |   523 ++
 matlab/Greedy/xml2struct.m   |   183 +
 7 files changed, 17400 insertions(+)
 create mode 100644 matlab/Greedy/MatlabGreedy.m
 create mode 100644 matlab/Greedy/README.txt
 create mode 100644 matlab/Greedy/bier127.xml
 create mode 100644 matlab/Greedy/license.txt
 create mode 100644 matlab/Greedy/ulysses16.xml
 create mode 100644 matlab/Greedy/ulysses22.xml
 create mode 100644 matlab/Greedy/xml2struct.m

diff --git a/matlab/Greedy/MatlabGreedy.m b/matlab/Greedy/MatlabGreedy.m
new file mode 100644
index 0000000..0873353
--- /dev/null
+++ b/matlab/Greedy/MatlabGreedy.m
@@ -0,0 +1,102 @@
+%cost of an edge
+%data.travellingSalesmanProblemInstance.graph.vertex{1}.edge{1}.Attributes.cost;
+
+%other node
+%data.travellingSalesmanProblemInstance.graph.vertex{1}.edge{1}.Text;
+function [cost] = MatlabGreedy(filename)
+    %read XML file into a structure
+    [data] = xml2struct(filename);
+    [t,numnodes] = size(data.travellingSalesmanProblemInstance.graph.vertex);
+    G = graph;
+
+    i = 1;
+
+    %add nodes to graph
+    while i <= numnodes
+        G = addnode(G,int2str(i));    
+        i = i+1;
+    end
+
+    P = G;
+    i = 1;
+
+    %add weights
+    while i <= numnodes
+        str = int2str(i);
+        j = 1;
+        while j < numnodes
+            node = data.travellingSalesmanProblemInstance.graph.vertex{i}.edge{j}.Text;
+            node = int2str(str2num(node) + 1); %translate to start at index 1 to account for matlab
+            weight = str2num(data.travellingSalesmanProblemInstance.graph.vertex{i}.edge{j}.Attributes.cost);
+
+            if (findedge(G,str,node) == 0 && j ~= i) %if edge has not been added already
+                G = addedge(G,str,node,weight);
+            end
+
+            j = j+1;
+        end
+
+        i = i+1;
+    end
+
+    %setting up travelling saleman vars
+    i = 1; %initial starting point
+    j = 1;
+    str = int2str(i);
+    weights = zeros(numnodes,1);
+    nnodes = zeros(numnodes,1);
+    visited = zeros(numnodes,1);
+    visited(i) = 1; 
+    done = false;
+    cost = 0;
+
+    disp('Path taken')
+    disp(i)
+    while(~done)
+
+      %get neighbors
+      while j <= numnodes
+        str2 = int2str(j);
+        if(findedge(G,str,str2) ~= 0)
+            w = G.Edges.Weight(findedge(G,str,str2));
+            weights(j) = w;
+            nnodes(j) = j;
+        end
+        j = j+1;
+      end 
+
+      %remove weight 0 from missing edge between self and self
+      [M,I] = min(weights);
+      weights(I) = [];
+      nnodes(I) = [];
+
+      %find next nearest non visited neighbor
+      nearest = false;
+      while(~nearest)
+        [M,I] = min(weights); %get minimum weight
+        nei = nnodes(I);
+
+        if(visited(nei) == 0) %if not visited
+            nearest = true;        
+            P = addedge(P,str,int2str(nei));
+            visited(nei) = 1;
+            cost = cost + G.Edges.Weight(findedge(G,str,int2str(nei)));
+            str = int2str(nei);
+            disp(nei);
+        else %if visited, remove and try again
+            weights(I) = [];
+            nnodes(I) = [];
+        end
+      end
+
+      %check if done
+      if ~ismember(0,visited)
+          done = true;
+      end
+    end
+
+    %add final point 
+    P = addedge(P,'1',int2str(nei));
+    cost = cost + G.Edges.Weight(findedge(G,'1',int2str(nei)));
+    plot(P)
+end
diff --git a/matlab/Greedy/README.txt b/matlab/Greedy/README.txt
new file mode 100644
index 0000000..3f468ae
--- /dev/null
+++ b/matlab/Greedy/README.txt
@@ -0,0 +1,6 @@
+Tested with ulysses16, run with 
+
+matlab -r "MatlabGreedy('filename')" -nodesktop
+
+
+ans is the total cost of the trip. 
diff --git a/matlab/Greedy/bier127.xml b/matlab/Greedy/bier127.xml
new file mode 100644
index 0000000..0b6aa17
--- /dev/null
+++ b/matlab/Greedy/bier127.xml
@@ -0,0 +1,16273 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no" ?>
+<travellingSalesmanProblemInstance>
+
+  <name>bier127</name>
+
+  <source>TSPLIB</source>
+
+  <description>127 Biergaerten in Augsburg (Juenger/Reinelt)</description>
+
+  <doublePrecision>15</doublePrecision>
+
+  <ignoredDigits>5</ignoredDigits>
+
+  <graph>
+    <vertex>
+      <edge cost="6.561950929411161e+02">1</edge>
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diff --git a/matlab/Greedy/license.txt b/matlab/Greedy/license.txt
new file mode 100644
index 0000000..21b570d
--- /dev/null
+++ b/matlab/Greedy/license.txt
@@ -0,0 +1,24 @@
+Copyright (c) 2010, Wouter Falkena
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are
+met:
+
+    * Redistributions of source code must retain the above copyright
+      notice, this list of conditions and the following disclaimer.
+    * Redistributions in binary form must reproduce the above copyright
+      notice, this list of conditions and the following disclaimer in
+      the documentation and/or other materials provided with the distribution
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+POSSIBILITY OF SUCH DAMAGE.
diff --git a/matlab/Greedy/ulysses16.xml b/matlab/Greedy/ulysses16.xml
new file mode 100644
index 0000000..dda5a8a
--- /dev/null
+++ b/matlab/Greedy/ulysses16.xml
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+<?xml version="1.0" encoding="UTF-8" standalone="no" ?>
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diff --git a/matlab/Greedy/ulysses22.xml b/matlab/Greedy/ulysses22.xml
new file mode 100644
index 0000000..4a20ea6
--- /dev/null
+++ b/matlab/Greedy/ulysses22.xml
@@ -0,0 +1,523 @@
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+
+</travellingSalesmanProblemInstance>
diff --git a/matlab/Greedy/xml2struct.m b/matlab/Greedy/xml2struct.m
new file mode 100644
index 0000000..dcd85a2
--- /dev/null
+++ b/matlab/Greedy/xml2struct.m
@@ -0,0 +1,183 @@
+function [ s ] = xml2struct( file )
+%Convert xml file into a MATLAB structure
+% [ s ] = xml2struct( file )
+%
+% A file containing:
+% <XMLname attrib1="Some value">
+%   <Element>Some text</Element>
+%   <DifferentElement attrib2="2">Some more text</Element>
+%   <DifferentElement attrib3="2" attrib4="1">Even more text</DifferentElement>
+% </XMLname>
+%
+% Will produce:
+% s.XMLname.Attributes.attrib1 = "Some value";
+% s.XMLname.Element.Text = "Some text";
+% s.XMLname.DifferentElement{1}.Attributes.attrib2 = "2";
+% s.XMLname.DifferentElement{1}.Text = "Some more text";
+% s.XMLname.DifferentElement{2}.Attributes.attrib3 = "2";
+% s.XMLname.DifferentElement{2}.Attributes.attrib4 = "1";
+% s.XMLname.DifferentElement{2}.Text = "Even more text";
+%
+% Please note that the following characters are substituted
+% '-' by '_dash_', ':' by '_colon_' and '.' by '_dot_'
+%
+% Written by W. Falkena, ASTI, TUDelft, 21-08-2010
+% Attribute parsing speed increased by 40% by A. Wanner, 14-6-2011
+% Added CDATA support by I. Smirnov, 20-3-2012
+%
+% Modified by X. Mo, University of Wisconsin, 12-5-2012
+
+    if (nargin < 1)
+        clc;
+        help xml2struct
+        return
+    end
+    
+    if isa(file, 'org.apache.xerces.dom.DeferredDocumentImpl') || isa(file, 'org.apache.xerces.dom.DeferredElementImpl')
+        % input is a java xml object
+        xDoc = file;
+    else
+        %check for existance
+        if (exist(file,'file') == 0)
+            %Perhaps the xml extension was omitted from the file name. Add the
+            %extension and try again.
+            if (isempty(strfind(file,'.xml')))
+                file = [file '.xml'];
+            end
+            
+            if (exist(file,'file') == 0)
+                error(['The file ' file ' could not be found']);
+            end
+        end
+        %read the xml file
+        xDoc = xmlread(file);
+    end
+    
+    %parse xDoc into a MATLAB structure
+    s = parseChildNodes(xDoc);
+    
+end
+
+% ----- Subfunction parseChildNodes -----
+function [children,ptext,textflag] = parseChildNodes(theNode)
+    % Recurse over node children.
+    children = struct;
+    ptext = struct; textflag = 'Text';
+    if hasChildNodes(theNode)
+        childNodes = getChildNodes(theNode);
+        numChildNodes = getLength(childNodes);
+
+        for count = 1:numChildNodes
+            theChild = item(childNodes,count-1);
+            [text,name,attr,childs,textflag] = getNodeData(theChild);
+            
+            if (~strcmp(name,'#text') && ~strcmp(name,'#comment') && ~strcmp(name,'#cdata_dash_section'))
+                %XML allows the same elements to be defined multiple times,
+                %put each in a different cell
+                if (isfield(children,name))
+                    if (~iscell(children.(name)))
+                        %put existsing element into cell format
+                        children.(name) = {children.(name)};
+                    end
+                    index = length(children.(name))+1;
+                    %add new element
+                    children.(name){index} = childs;
+                    if(~isempty(fieldnames(text)))
+                        children.(name){index} = text; 
+                    end
+                    if(~isempty(attr)) 
+                        children.(name){index}.('Attributes') = attr; 
+                    end
+                else
+                    %add previously unknown (new) element to the structure
+                    children.(name) = childs;
+                    if(~isempty(text) && ~isempty(fieldnames(text)))
+                        children.(name) = text; 
+                    end
+                    if(~isempty(attr)) 
+                        children.(name).('Attributes') = attr; 
+                    end
+                end
+            else
+                ptextflag = 'Text';
+                if (strcmp(name, '#cdata_dash_section'))
+                    ptextflag = 'CDATA';
+                elseif (strcmp(name, '#comment'))
+                    ptextflag = 'Comment';
+                end
+                
+                %this is the text in an element (i.e., the parentNode) 
+                if (~isempty(regexprep(text.(textflag),'[\s]*','')))
+                    if (~isfield(ptext,ptextflag) || isempty(ptext.(ptextflag)))
+                        ptext.(ptextflag) = text.(textflag);
+                    else
+                        %what to do when element data is as follows:
+                        %<element>Text <!--Comment--> More text</element>
+                        
+                        %put the text in different cells:
+                        % if (~iscell(ptext)) ptext = {ptext}; end
+                        % ptext{length(ptext)+1} = text;
+                        
+                        %just append the text
+                        ptext.(ptextflag) = [ptext.(ptextflag) text.(textflag)];
+                    end
+                end
+            end
+            
+        end
+    end
+end
+
+% ----- Subfunction getNodeData -----
+function [text,name,attr,childs,textflag] = getNodeData(theNode)
+    % Create structure of node info.
+    
+    %make sure name is allowed as structure name
+    name = toCharArray(getNodeName(theNode))';
+    name = strrep(name, '-', '_dash_');
+    name = strrep(name, ':', '_colon_');
+    name = strrep(name, '.', '_dot_');
+
+    attr = parseAttributes(theNode);
+    if (isempty(fieldnames(attr))) 
+        attr = []; 
+    end
+    
+    %parse child nodes
+    [childs,text,textflag] = parseChildNodes(theNode);
+    
+    if (isempty(fieldnames(childs)) && isempty(fieldnames(text)))
+        %get the data of any childless nodes
+        % faster than if any(strcmp(methods(theNode), 'getData'))
+        % no need to try-catch (?)
+        % faster than text = char(getData(theNode));
+        text.(textflag) = toCharArray(getTextContent(theNode))';
+    end
+    
+end
+
+% ----- Subfunction parseAttributes -----
+function attributes = parseAttributes(theNode)
+    % Create attributes structure.
+
+    attributes = struct;
+    if hasAttributes(theNode)
+       theAttributes = getAttributes(theNode);
+       numAttributes = getLength(theAttributes);
+
+       for count = 1:numAttributes
+            %attrib = item(theAttributes,count-1);
+            %attr_name = regexprep(char(getName(attrib)),'[-:.]','_');
+            %attributes.(attr_name) = char(getValue(attrib));
+
+            %Suggestion of Adrian Wanner
+            str = toCharArray(toString(item(theAttributes,count-1)))';
+            k = strfind(str,'='); 
+            attr_name = str(1:(k(1)-1));
+            attr_name = strrep(attr_name, '-', '_dash_');
+            attr_name = strrep(attr_name, ':', '_colon_');
+            attr_name = strrep(attr_name, '.', '_dot_');
+            attributes.(attr_name) = str((k(1)+2):(end-1));
+       end
+    end
+end
\ No newline at end of file