From bfb204113b740ecbe14dfac55268132e808584df Mon Sep 17 00:00:00 2001 From: clay austin Date: Tue, 18 Jul 2017 09:21:48 -0500 Subject: [PATCH 01/45] functions for testing with real data --- test/shared.py | 203 +++++++++++++++++++++++++++++++++++++++++++++++-- 1 file changed, 196 insertions(+), 7 deletions(-) diff --git a/test/shared.py b/test/shared.py index 9035a86..29d53de 100644 --- a/test/shared.py +++ b/test/shared.py @@ -1,12 +1,42 @@ import numpy as np -import datetime +from datetime import datetime import logging import aniso8601 +import itertools +import glob +import json +import os +import math +import base64 +import xarray as xr + +TEST_UBIDS = ['LANDSAT_4/TM/SRB1', 'LANDSAT_4/TM/SRB2', 'LANDSAT_4/TM/SRB3', 'LANDSAT_4/TM/SRB4', + 'LANDSAT_4/TM/SRB5', 'LANDSAT_4/TM/BTB6', 'LANDSAT_4/TM/SRB7', 'LANDSAT_4/TM/PIXELQA', + 'LANDSAT_5/TM/SRB1', 'LANDSAT_5/TM/SRB2', 'LANDSAT_5/TM/SRB3', 'LANDSAT_5/TM/SRB4', + 'LANDSAT_5/TM/SRB5', 'LANDSAT_5/TM/BTB6', 'LANDSAT_5/TM/SRB7', 'LANDSAT_5/TM/PIXELQA', + 'LANDSAT_7/ETM/SRB1', 'LANDSAT_7/ETM/SRB2', 'LANDSAT_7/ETM/SRB3', 'LANDSAT_7/ETM/SRB4', + 'LANDSAT_7/ETM/SRB5', 'LANDSAT_7/ETM/BTB6', 'LANDSAT_7/ETM/SRB7', 'LANDSAT_7/ETM/PIXELQA', + 'LANDSAT_8/OLI_TIRS/SRB2', 'LANDSAT_8/OLI_TIRS/SRB3', 'LANDSAT_8/OLI_TIRS/SRB4', + 'LANDSAT_8/OLI_TIRS/SRB5', 'LANDSAT_8/OLI_TIRS/SRB6', 'LANDSAT_8/OLI_TIRS/SRB7', + 'LANDSAT_8/OLI_TIRS/BTB10', 'LANDSAT_8/OLI_TIRS/PIXELQA'] + +# sample1 = read_data("test/resources/sample_1.csv") +# sample2 = read_data("test/resources/sample_2.csv") +# persistent_snow = read_data("test/resources/sample_WA_grid08_row9_col2267_persistent_snow.csv") +# standard_procedure = read_data("test/resources/sample_WA_grid08_row999_col1_normal.csv") +# fmask_fail = read_data("test/resources/sample_WA_grid08_row12_col2265_fmask_fail.csv") log = logging.getLogger(__name__) +def dtstr_to_ordinal(dtstr, iso=True): + """ Return ordinal from string formatted date""" + _fmt = '%Y-%m-%dT%H:%M:%SZ' if iso else '%Y-%m-%d %H:%M:%S' + _dt = datetime.strptime(dtstr, _fmt) + return _dt.toordinal() + + def two_change_data(): """ Generate sample data that has two changes in it. The qa data is not correct at all so this data cannot be used during filtering """ @@ -67,7 +97,7 @@ def gen_acquisition_delta(interval): Example: gen_acquisition_delta('R90/P16D/2000-01-01') """ - epoch = datetime.datetime.utcfromtimestamp(0).date() + epoch = datetime.utcfromtimestamp(0).date() dates = gen_acquisition_dates(interval) yield [(date-epoch).days for date in dates] @@ -115,8 +145,167 @@ def sample_line(time_range, bands=7): return times, observations -# sample1 = read_data("test/resources/sample_1.csv") -# sample2 = read_data("test/resources/sample_2.csv") -# persistent_snow = read_data("test/resources/sample_WA_grid08_row9_col2267_persistent_snow.csv") -# standard_procedure = read_data("test/resources/sample_WA_grid08_row999_col1_normal.csv") -# fmask_fail = read_data("test/resources/sample_WA_grid08_row12_col2265_fmask_fail.csv") +def near(point, interval, offset): + """ Calculate the nearest points along the x and y axis """ + return ((math.floor((point - offset) / interval)) * interval) + offset + + +def point_to_chip(x, y, x_interval, y_interval, x_offset, y_offset): + """ Transform coordinates into the identifying coordinates of the containing chip """ + return near(x, x_interval, x_offset), near(y, y_interval, y_offset) + + +def snap(x, y, chip_spec={'shift_y': -195.0, 'shift_x': 2415.0, 'chip_x': 3000, 'chip_y': -3000}): + """ Identify the chip containing the provided coordinate """ + chip = point_to_chip(x, y, chip_spec['chip_x'], chip_spec['chip_y'], chip_spec['shift_x'], chip_spec['shift_y']) + return int(chip[0]), int(chip[1]) + + +def flatten(iterable): + """ + Reduce dimensionality of iterable containing iterables + """ + return itertools.chain.from_iterable(iterable) + + +def f_read(path): + """ + helper function for reading file contents + """ + with open(path, 'r+') as handle: + return handle.read() + + +def return_key(value, kmap): + """ + return the key of a dict whose value contains arg + """ + for k in kmap: + if value in kmap[k]: + return k + + +def chips(spectra, ubid, x, y, root_dir="test/resources/test-data/chips/band-json"): + """ + Return chips for named spectra + :param spectra: red, green, blue, nir, swir1, swir2, thermal or cfmask + :type spectra: string + :returns: sequence of chips + """ + path = ''.join([root_dir, os.sep, "*", spectra, '*', str(x), '*', str(y), '*']) + filenames = glob.glob(path) + + #all_chips = flatten([json.loads(f_read(filename)) for filename in filenames]) + _chip_json = [] + for filename in filenames: + _chip_json.append(json.loads(f_read(filename))) + all_chips = flatten(_chip_json) + + # chips = [i for i in all_chips if i['ubid'] == ubid] + _out_chips = [] + for chip in all_chips: + if chip['ubid'] == ubid: + _out_chips.append(chip) + + #return tuple(chips) + return tuple(_out_chips) + + +def chip_specs(spectra, root_dir="test/resources/test-data/chip-specs"): + """ + Returns chip specs for the named spectra. + :param spectra: red, green, blue, nir, swir1, swir2, thermal or cfmask + :type spectra: string + :returns: sequence of chip specs + """ + path = ''.join([root_dir, os.sep, '*', spectra, '*']) + filenames = glob.glob(path) + return json.loads(f_read(filenames[0])) + + +def spectral_map(specs_url): + """ Return a dict of sensor bands keyed to their respective spectrum """ + _spec_map = dict() + _map = {'blue': ('sr', 'blue'), 'green': ('sr', 'green'), 'red': ('sr', 'red'), 'nir': ('sr', 'nir'), + 'swir1': ('sr', 'swir1'), 'swir2': ('sr', 'swir2'), 'thermal': ('bt', 'thermal -BTB11'), + 'cfmask': 'pixelqa'} + + try: + for spectra in _map: + resp = chip_specs(spectra) + # value needs to be a list, make it unique using set() + _spec_map[spectra] = list(set([i['ubid'] for i in resp])) + _spec_whole = chip_specs('all') + except Exception as e: + raise Exception("Problem generating spectral map from api query, specs_url: {}\n message: {}".format(specs_url, e)) + return _spec_map, _spec_whole + + +def as_numpy_array(chip, specs_map): + """ Return numpy array of chip data grouped by spectral map """ + NUMPY_TYPES = { + 'UINT8': np.uint8, + 'UINT16': np.uint16, + 'INT8': np.int8, + 'INT16': np.int16 + } + try: + spec = specs_map[chip['ubid']] + np_type = NUMPY_TYPES[spec['data_type']] + shape = specs_map[spec['ubid']]['data_shape'] + buffer = base64.b64decode(chip['data']) + except KeyError as e: + raise Exception("as_numpy_array inputs missing expected keys: {}".format(e)) + + return np.frombuffer(buffer, np_type).reshape(*shape) + + +def landsat_dataset(spectrum, ubid, specs, chips): + """ Return stack of landsat data for a given ubid, x, y, and time-span """ + # specs may not be unique, deal with it + uniq_specs = [] + for spec in specs: + if spec not in uniq_specs: + uniq_specs.append(spec) + + #specs_map = dict([[spec['ubid'], spec] for spec in uniq_specs if spec['ubid'] == ubid]) + _sm = [] + for spec in uniq_specs: + if spec['ubid'] == ubid: + _sm.append([spec['ubid'], spec]) + specs_map = dict(_sm) + + #rasters = xr.DataArray([as_numpy_array(chip, specs_map) for chip in chips]) + _rast = [] + for chip in chips: + _rast.append(as_numpy_array(chip, specs_map)) + rasters = xr.DataArray(_rast) + + ds = xr.Dataset() + ds[spectrum] = (('t', 'x', 'y'), rasters) + ds[spectrum].attrs = {'color': spectrum} + #ds.coords['t'] = (('t'), pd.to_datetime([t['acquired'] for t in chips])) + # ds.coords['t'] = (('t'), [t['acquired'] for t in chips]) + t_acq = [] + for t in chips: + t_acq.append(t['acquired']) + ds.coords['t'] = (('t'), t_acq) + return ds + + +def rainbow(x, y, t, specs_url, chips_url, requested_ubids): + """ Return all the landsat data, organized by spectra for a given x, y, and time-span """ + spec_map, spec_whole = spectral_map(specs_url) + ds = xr.Dataset() + for (spectrum, ubids) in spec_map.items(): + for ubid in ubids: + if ubid in requested_ubids: + spectra = return_key(ubid, spec_map) + #print("spectra is: %s" % spectra) + chips_resp = chips(spectra, ubid, x, y) + if chips_resp: + band = landsat_dataset(spectrum, ubid, spec_whole, chips_resp) + if band: + # combine_first instead of merge, for locations where data is missing for some bands + ds = ds.combine_first(band) + return ds.fillna(0) From 0f8576db3c6f8d3ce0f20cbaf52fb6e8c69a0ae5 Mon Sep 17 00:00:00 2001 From: klsmith-usgs Date: Tue, 8 Aug 2017 13:12:07 -0500 Subject: [PATCH 02/45] Only use the detection bands for coefficient fitting during change detection --- ccd/change.py | 8 ++--- ccd/cli.py | 84 ----------------------------------------------- ccd/procedures.py | 52 ++++++++++++++++++----------- 3 files changed, 35 insertions(+), 109 deletions(-) delete mode 100644 ccd/cli.py diff --git a/ccd/change.py b/ccd/change.py index eab59e5..4908e96 100644 --- a/ccd/change.py +++ b/ccd/change.py @@ -14,7 +14,7 @@ log = logging.getLogger(__name__) -def stable(models, dates, variogram, t_cg, detection_bands): +def stable(models, dates, variogram, t_cg): """Determine if we have a stable model to start building with Args: @@ -23,8 +23,6 @@ def stable(models, dates, variogram, t_cg, detection_bands): normalization factor dates: array of ordinal date values t_cg: change threshold - detection_bands: index locations of the spectral bands that are used - to determine stability Returns: Boolean on whether stable or not @@ -32,8 +30,8 @@ def stable(models, dates, variogram, t_cg, detection_bands): # This could be written differently, or more performant using numpy in the # future check_vals = [] - for idx in detection_bands: - rmse_norm = max(variogram[idx], models[idx].rmse) + for idx, vario in enumerate(variogram): + rmse_norm = max(vario, models[idx].rmse) slope = models[idx].fitted_model.coef_[0] * (dates[-1] - dates[0]) check_val = (abs(slope) + abs(models[idx].residual[0]) + diff --git a/ccd/cli.py b/ccd/cli.py deleted file mode 100644 index cb85416..0000000 --- a/ccd/cli.py +++ /dev/null @@ -1,84 +0,0 @@ -#!/usr/bin/env python3 -""" Command line interface to Python Continuous Change Detection. - -Currently unsupported through beta. - -However, the click conventions used to import a .csv test dataset could be -replaced with other conventions (API, wget, etc) to formulate a an -observations data set for invoking pyccd with a similar client call to: -results = ccd.detect() . -""" - -from ccd import app -import ccd -from click_plugins import with_plugins -from pkg_resources import iter_entry_points -import click -import json -import numpy as np -import time -import timeit - - -logger = app.logging.getLogger(__name__) - - -@with_plugins(iter_entry_points('core_package.cli_plugins')) -@click.group() -def cli(): - """Commandline interface for your package.""" - logger.info("CLI running...") - - -@cli.command() -@click.argument('path') -@click.option('--format', default='json', type=click.Choice(['json', 'table'])) -def sample(path, format): - """Subcommand for processing sample data.""" - - logger.debug("Loading data...") - samples = np.genfromtxt(path, delimiter=',', dtype=np.int).T - - logger.debug("Building change model...") - - start_time = timeit.default_timer() - results = ccd.detect(*samples) - print("ElapsedTime: ", round((timeit.default_timer() - start_time), 3)) - - if format == 'table': - click.echo(results_to_table(results)) - else: - click.echo(json.dumps(results, indent=2)) - - logger.debug("Done...") - - -@cli.command() -def another_subcommand(): - """Another Subcommand that does something.""" - logger.info("Another Subcommand running...") - - -def results_to_table(results): - """Output change detection results into text table""" - change_format = "Time Segment {0}: {1}...{2}" - band_format = "{0:10} {1:10.4f} {2:10.4f} {3:10.4} {4:10.4f} {5:10.4f} {6:>10.4f} {7:>15.2f}" - columns = ["band", "mags", 'rmse', 'c1', 'c2', 'c3', 'c4', 'intercept'] - for ix, segment in enumerate(results): - - # describe the segment period and inputs - click.echo(change_format.format(ix, segment['start_day'], segment['end_day'])) - - click.echo("{0:<10} {1:>10} {2:>10} {3:>10} {4:>10} {5:>10} {6:>10} {7:>15}".format(*columns)) - for color in ['red', 'green', 'blue', 'nir', 'swir1', 'swir2']: - click.echo(band_format.format(*[color, - segment[color]['magnitude'], - segment[color]['rmse'], - segment[color]['coefficients'][0], - segment[color]['coefficients'][1], - segment[color]['coefficients'][2], - segment[color]['coefficients'][3], - segment[color]['intercept']])) - -if __name__ == '__main__': - cli() diff --git a/ccd/procedures.py b/ccd/procedures.py index a498230..b257ee7 100644 --- a/ccd/procedures.py +++ b/ccd/procedures.py @@ -226,6 +226,7 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): peek_size = proc_params.PEEK_SIZE thermal_idx = proc_params.THERMAL_IDX curve_qa = proc_params.CURVE_QA + detection_bands = proc_params.DETECTION_BANDS log.debug('Build change models - dates: %s, obs: %s, ' 'meow_size: %s, peek_size: %s', @@ -273,7 +274,7 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): # Calculate the variogram/madogram that will be used in subsequent # processing steps. See algorithm documentation for further information. variogram = adjusted_variogram(dates[processing_mask], - observations[:, processing_mask]) + observations[detection_bands][:, processing_mask]) log.debug('Variogram values: %s', variogram) # Only build models as long as sufficient data exists. @@ -442,13 +443,13 @@ def initialize(dates, observations, fitter_fn, model_window, processing_mask, log.debug('Generating models to check for stability') models = [fitter_fn(period[model_window], spectrum, fit_max_iter, avg_days_yr, 4) - for spectrum in spectral_obs[:, model_window]] + for spectrum in spectral_obs[detection_bands, model_window]] # If a model is not stable, then it is possible that a disturbance # exists somewhere in the observation window. The window shifts # forward in time, and begins initialization again. if not stable(models, period[model_window], variogram, - change_thresh, detection_bands): + change_thresh): model_window = slice(model_window.start + 1, model_window.stop + 1) log.debug('Unstable model, shift window to: %s', model_window) @@ -521,6 +522,11 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, # Used for comparison purposes fit_span = period[model_window.stop - 1] - period[model_window.start] + # Initial value, fringe case when it drops to this function, but there + # is not enough observations to continue. + num_coefs = determine_num_coefs(period[model_window], coef_min, + coef_mid, coef_max, num_obs_fact) + # stop is always exclusive while model_window.stop + peek_size < period.shape[0] or models is None: num_coefs = determine_num_coefs(period[model_window], coef_min, @@ -543,14 +549,14 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, log.debug('Retrain models, less than 24 samples') models = [fitter_fn(period[fit_window], spectrum, fit_max_iter, avg_days_yr, num_coefs) - for spectrum in spectral_obs[:, fit_window]] + for spectrum in spectral_obs[detection_bands, fit_window]] residuals = np.array([calc_residuals(period[peek_window], - spectral_obs[idx, peek_window], + spectral_obs[detection_bands][idx, peek_window], models[idx], avg_days_yr) - for idx in range(observations.shape[0])]) + for idx in range(len(detection_bands))]) - comp_rmse = [models[idx].rmse for idx in detection_bands] + comp_rmse = [models[idx].rmse for idx in range(len(models))] # More than 24 points else: @@ -566,12 +572,12 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, models = [fitter_fn(period[fit_window], spectrum, fit_max_iter, avg_days_yr, num_coefs) - for spectrum in spectral_obs[:, fit_window]] + for spectrum in spectral_obs[detection_bands, fit_window]] residuals = np.array([calc_residuals(period[peek_window], - spectral_obs[idx, peek_window], + spectral_obs[detection_bands][idx, peek_window], models[idx], avg_days_yr) - for idx in range(observations.shape[0])]) + for idx in range(len(detection_bands))]) # We want to use the closest residual values to the peek_window # values based on seasonality. @@ -581,13 +587,11 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, # Calculate an RMSE for the seasonal residual values, using 8 # as the degrees of freedom. comp_rmse = [euclidean_norm(models[idx].residual[closest_indexes]) / 4 - for idx in detection_bands] + for idx in range(len(models))] # Calculate the change magnitude values for each observation in the # peek_window. - magnitude = change_magnitude(residuals[detection_bands, :], - variogram[detection_bands], - comp_rmse) + magnitude = change_magnitude(residuals, variogram, comp_rmse) if detect_change(magnitude, change_thresh): log.debug('Change detected at: %s', peek_window.start) @@ -613,6 +617,16 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, model_window = slice(model_window.start, model_window.stop + 1) + # Exiting LookForward means that we now need to fit all the bands. + models = [fitter_fn(period[fit_window], spectrum, + fit_max_iter, avg_days_yr, num_coefs) + for spectrum in spectral_obs[:, fit_window]] + + residuals = np.array([calc_residuals(period[peek_window], + spectral_obs[idx, peek_window], + models[idx], avg_days_yr) + for idx in range(observations.shape[0])]) + result = results_to_changemodel(fitted_models=models, start_day=period[model_window.start], end_day=period[model_window.stop - 1], @@ -680,19 +694,17 @@ def lookback(dates, observations, model_window, models, previous_break, peek_window.start, peek_window) residuals = np.array([calc_residuals(period[peek_window], - spectral_obs[idx, peek_window], + spectral_obs[detection_bands][idx, peek_window], models[idx], avg_days_yr) - for idx in range(observations.shape[0])]) + for idx in range(len(detection_bands))]) # log.debug('Residuals for peek window: %s', residuals) - comp_rmse = [models[idx].rmse for idx in detection_bands] + comp_rmse = [models[idx].rmse for idx in range(len(detection_bands))] log.debug('RMSE values for comparison: %s', comp_rmse) - magnitude = change_magnitude(residuals[detection_bands, :], - variogram[detection_bands], - comp_rmse) + magnitude = change_magnitude(residuals, variogram, comp_rmse) if detect_change(magnitude, change_thresh): log.debug('Change detected for index: %s', peek_window.start) From c67525fbb7d06a95d0a8bd8508376283923ed7e6 Mon Sep 17 00:00:00 2001 From: klsmith-usgs Date: Tue, 8 Aug 2017 13:19:05 -0500 Subject: [PATCH 03/45] fix some looping --- ccd/procedures.py | 18 ++++++++++++------ 1 file changed, 12 insertions(+), 6 deletions(-) diff --git a/ccd/procedures.py b/ccd/procedures.py index b257ee7..2520326 100644 --- a/ccd/procedures.py +++ b/ccd/procedures.py @@ -498,6 +498,9 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, avg_days_yr = proc_params.AVG_DAYS_YR fit_max_iter = proc_params.LASSO_MAX_ITER + # Used for loops. + num_detectbands = len(detection_bands) + # Step 4: lookforward. # The second step is to update a model until observations that do not # fit the model are found. @@ -554,9 +557,9 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, residuals = np.array([calc_residuals(period[peek_window], spectral_obs[detection_bands][idx, peek_window], models[idx], avg_days_yr) - for idx in range(len(detection_bands))]) + for idx in range(num_detectbands)]) - comp_rmse = [models[idx].rmse for idx in range(len(models))] + comp_rmse = [model.rmse for model in models] # More than 24 points else: @@ -577,7 +580,7 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, residuals = np.array([calc_residuals(period[peek_window], spectral_obs[detection_bands][idx, peek_window], models[idx], avg_days_yr) - for idx in range(len(detection_bands))]) + for idx in range(num_detectbands)]) # We want to use the closest residual values to the peek_window # values based on seasonality. @@ -587,7 +590,7 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, # Calculate an RMSE for the seasonal residual values, using 8 # as the degrees of freedom. comp_rmse = [euclidean_norm(models[idx].residual[closest_indexes]) / 4 - for idx in range(len(models))] + for idx in range(num_detectbands)] # Calculate the change magnitude values for each observation in the # peek_window. @@ -671,6 +674,9 @@ def lookback(dates, observations, model_window, models, previous_break, outlier_thresh = proc_params.OUTLIER_THRESHOLD avg_days_yr = proc_params.AVG_DAYS_YR + # Used for loops. + num_detectbands = len(detection_bands) + log.debug('Previous break: %s model window: %s', previous_break, model_window) period = dates[processing_mask] spectral_obs = observations[:, processing_mask] @@ -696,11 +702,11 @@ def lookback(dates, observations, model_window, models, previous_break, residuals = np.array([calc_residuals(period[peek_window], spectral_obs[detection_bands][idx, peek_window], models[idx], avg_days_yr) - for idx in range(len(detection_bands))]) + for idx in range(num_detectbands)]) # log.debug('Residuals for peek window: %s', residuals) - comp_rmse = [models[idx].rmse for idx in range(len(detection_bands))] + comp_rmse = [model.rmse for model in models] log.debug('RMSE values for comparison: %s', comp_rmse) From f6989c653df317528d0b13bc23456333e7feb29c Mon Sep 17 00:00:00 2001 From: clay austin Date: Tue, 8 Aug 2017 19:50:36 -0500 Subject: [PATCH 04/45] data org timing scripts --- merl.py | 25 +++++++++++++++++++++++++ rbow.py | 44 ++++++++++++++++++++++++++++++++++++++++++++ test/shared.py | 2 ++ 3 files changed, 71 insertions(+) create mode 100644 merl.py create mode 100644 rbow.py diff --git a/merl.py b/merl.py new file mode 100644 index 0000000..ca71808 --- /dev/null +++ b/merl.py @@ -0,0 +1,25 @@ +from merlin.support import aardvark, chip_spec_queries, data_config +from merlin.timeseries import pyccd as pyccd_rods +import timeit + + +def get_rods(): + dc = data_config() + point = (dc['x'], dc['y']) + specurl = 'http://localhost' + chipurl = 'http://localhost' + specs_fn = aardvark.chip_specs + chips_fn = aardvark.chips + acquired = dc['acquired'] + queries = chip_spec_queries(chipurl) + pi = pyccd_rods(point, specurl, specs_fn, chipurl, chips_fn, acquired, queries) + return True + + +if __name__ == '__main__': + iters = 5 + t = timeit.Timer("get_rods()", setup="from __main__ import get_rods") + print(t.timeit(iters)/iters) + + + diff --git a/rbow.py b/rbow.py new file mode 100644 index 0000000..7542748 --- /dev/null +++ b/rbow.py @@ -0,0 +1,44 @@ +from datetime import datetime +from test.shared import snap, rainbow + +import timeit + +# detect results for x, y: -2094435, 1681005 took 2.455234 seconds to generate VERIFIED 2.6 seconds locally +# detect results for x, y: -2033595, 1685955 took 1.879693 seconds to generate +# detect results for x, y: -2098875, 1694895 took 0.986887 seconds to generate VERIFIED 1.8 seconds locally + + +def run_rbow(): + pixl_x, pixl_y = -2094435, 1681005 + pixl_x, pixl_y = -2098875, 1694895 + inputs_url = "https://lcmaphost.com?x={x}&y={y}&acquired=1982-01-01/2015-12-31\ + &ubid=LANDSAT_4/TM/SRB1&ubid=LANDSAT_4/TM/SRB2&ubid=LANDSAT_4/TM/SRB3&ubid=LANDSAT_4/TM/SRB4\ + &ubid=LANDSAT_4/TM/SRB5&ubid=LANDSAT_4/TM/BTB6&ubid=LANDSAT_4/TM/SRB7&ubid=LANDSAT_4/TM/PIXELQA\ + &ubid=LANDSAT_5/TM/SRB1&ubid=LANDSAT_5/TM/SRB2&ubid=LANDSAT_5/TM/SRB3&ubid=LANDSAT_5/TM/SRB4\ + &ubid=LANDSAT_5/TM/SRB5&ubid=LANDSAT_5/TM/BTB6&ubid=LANDSAT_5/TM/SRB7&ubid=LANDSAT_5/TM/PIXELQA\ + &ubid=LANDSAT_7/ETM/SRB1&ubid=LANDSAT_7/ETM/SRB2&ubid=LANDSAT_7/ETM/SRB3&ubid=LANDSAT_7/ETM/SRB4\ + &ubid=LANDSAT_7/ETM/SRB5&ubid=LANDSAT_7/ETM/BTB6&ubid=LANDSAT_7/ETM/SRB7&ubid=LANDSAT_7/ETM/PIXELQA\ + &ubid=LANDSAT_8/OLI_TIRS/SRB2&ubid=LANDSAT_8/OLI_TIRS/SRB3&ubid=LANDSAT_8/OLI_TIRS/SRB4&ubid=LANDSAT_8/OLI_TIRS/SRB5\ + &ubid=LANDSAT_8/OLI_TIRS/SRB6&ubid=LANDSAT_8/OLI_TIRS/SRB7&ubid=LANDSAT_8/OLI_TIRS/BTB10\ + &ubid=LANDSAT_8/OLI_TIRS/PIXELQA".format(x=pixl_x, y=pixl_y) + #dates = [i.split('=')[1] for i in inputs_url.split('&') if 'acquired=' in i][0] + chips_url = inputs_url.split('?')[0] + specs_url = chips_url.replace('/chips', '/chip-specs') + querystr_list = inputs_url.split('?')[1].split('&') + requested_ubids = tuple([i.replace('ubid=', '') for i in querystr_list if 'ubid=' in i]) + # get chip id + chip_x, chip_y = snap(pixl_x, pixl_y) + xindex = int((pixl_x - chip_x) / 30) + yindex = int((chip_y - pixl_y) / 30) + _start = datetime.now() + rbow = rainbow(-2094585, 1682805, '1982-01-01/2015-12-31', specs_url, chips_url, requested_ubids) + return True + +if __name__ == '__main__': + iters = 5 + t = timeit.Timer("run_rbow()", setup="from __main__ import run_rbow") + print(t.timeit(iters)/iters) + #run_rbow() + + + diff --git a/test/shared.py b/test/shared.py index 29d53de..d142298 100644 --- a/test/shared.py +++ b/test/shared.py @@ -10,6 +10,8 @@ import base64 import xarray as xr +import functools + TEST_UBIDS = ['LANDSAT_4/TM/SRB1', 'LANDSAT_4/TM/SRB2', 'LANDSAT_4/TM/SRB3', 'LANDSAT_4/TM/SRB4', 'LANDSAT_4/TM/SRB5', 'LANDSAT_4/TM/BTB6', 'LANDSAT_4/TM/SRB7', 'LANDSAT_4/TM/PIXELQA', 'LANDSAT_5/TM/SRB1', 'LANDSAT_5/TM/SRB2', 'LANDSAT_5/TM/SRB3', 'LANDSAT_5/TM/SRB4', From cabba036aacba6ea3ea46431f3c81435a9e40a35 Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 9 Aug 2017 07:37:54 -0500 Subject: [PATCH 05/45] detect baseline: chip/pixel(rc) (-2094585/1682805)/(97/57), 1.617s --- rbow_detect.py | 53 ++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 53 insertions(+) create mode 100644 rbow_detect.py diff --git a/rbow_detect.py b/rbow_detect.py new file mode 100644 index 0000000..797e231 --- /dev/null +++ b/rbow_detect.py @@ -0,0 +1,53 @@ +from datetime import datetime +from test.shared import snap, rainbow +import numpy as np +import pandas as pd +import ccd +import timeit + +def run_rbow(): + specs_url = 'http://localhost' + chips_url = 'http://localhost' + requested_ubids = ('LANDSAT_4/TM/SRB1','LANDSAT_4/TM/SRB2', 'LANDSAT_4/TM/SRB3', 'LANDSAT_4/TM/SRB4', + 'LANDSAT_4/TM/SRB5', 'LANDSAT_4/TM/BTB6', 'LANDSAT_4/TM/SRB7', 'LANDSAT_4/TM/PIXELQA', + 'LANDSAT_5/TM/SRB1', 'LANDSAT_5/TM/SRB2', 'LANDSAT_5/TM/SRB3', 'LANDSAT_5/TM/SRB4', + 'LANDSAT_5/TM/SRB5', 'LANDSAT_5/TM/BTB6', 'LANDSAT_5/TM/SRB7', 'LANDSAT_5/TM/PIXELQA', + 'LANDSAT_7/ETM/SRB1', 'LANDSAT_7/ETM/SRB2', 'LANDSAT_7/ETM/SRB3', 'LANDSAT_7/ETM/SRB4', + 'LANDSAT_7/ETM/SRB5', 'LANDSAT_7/ETM/BTB6', 'LANDSAT_7/ETM/SRB7', 'LANDSAT_7/ETM/PIXELQA', + 'LANDSAT_8/OLI_TIRS/SRB2', 'LANDSAT_8/OLI_TIRS/SRB3', 'LANDSAT_8/OLI_TIRS/SRB4', + 'LANDSAT_8/OLI_TIRS/SRB5', 'LANDSAT_8/OLI_TIRS/SRB6', 'LANDSAT_8/OLI_TIRS/SRB7', + 'LANDSAT_8/OLI_TIRS/BTB10', 'LANDSAT_8/OLI_TIRS/PIXELQA') + return rainbow(-2094585, 1682805, '1982-01-01/2015-12-31', specs_url, chips_url, requested_ubids) + + +def run_detect(rbow): + def dtstr_to_ordinal(dtstr, iso=True): + """ Return ordinal from string formatted date""" + _fmt = '%Y-%m-%dT%H:%M:%SZ' if iso else '%Y-%m-%d %H:%M:%S' + _dt = datetime.strptime(dtstr, _fmt) + return _dt.toordinal() + #return datetime.strptime(dtstr, _fmt).toordinal() + + row, col = 97, 57 + rainbow_date_array = np.array(rbow['t'].values) + result = ccd.detect([dtstr_to_ordinal(str(pd.to_datetime(i)), False) for i in rainbow_date_array], + np.array(rbow['blue'].values[:, row, col]), + np.array(rbow['green'].values[:, row, col]), + np.array(rbow['red'].values[:, row, col]), + np.array(rbow['nir'].values[:, row, col]), + np.array(rbow['swir1'].values[:, row, col]), + np.array(rbow['swir2'].values[:, row, col]), + np.array(rbow['thermal'].values[:, row, col]), + np.array(rbow['cfmask'].values[:, row, col], dtype=int), + params={}) + return True + + +if __name__ == '__main__': + iters = 5 + t = timeit.Timer("run_detect(r)", setup="from __main__ import run_detect, run_rbow; r=run_rbow()") + print(t.timeit(iters)/iters) + #run_rbow() + + + From 1970d60ec464512e200b51635a824690c3676f4e Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 9 Aug 2017 07:58:45 -0500 Subject: [PATCH 06/45] detect skip np.array on inputs: no improvement --- rbow_detect.py | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/rbow_detect.py b/rbow_detect.py index 797e231..c923943 100644 --- a/rbow_detect.py +++ b/rbow_detect.py @@ -31,20 +31,20 @@ def dtstr_to_ordinal(dtstr, iso=True): row, col = 97, 57 rainbow_date_array = np.array(rbow['t'].values) result = ccd.detect([dtstr_to_ordinal(str(pd.to_datetime(i)), False) for i in rainbow_date_array], - np.array(rbow['blue'].values[:, row, col]), - np.array(rbow['green'].values[:, row, col]), - np.array(rbow['red'].values[:, row, col]), - np.array(rbow['nir'].values[:, row, col]), - np.array(rbow['swir1'].values[:, row, col]), - np.array(rbow['swir2'].values[:, row, col]), - np.array(rbow['thermal'].values[:, row, col]), - np.array(rbow['cfmask'].values[:, row, col], dtype=int), + rbow['blue'].values[:, row, col], + rbow['green'].values[:, row, col], + rbow['red'].values[:, row, col], + rbow['nir'].values[:, row, col], + rbow['swir1'].values[:, row, col], + rbow['swir2'].values[:, row, col], + rbow['thermal'].values[:, row, col], + rbow['cfmask'].values[:, row, col], params={}) return True if __name__ == '__main__': - iters = 5 + iters = 100 t = timeit.Timer("run_detect(r)", setup="from __main__ import run_detect, run_rbow; r=run_rbow()") print(t.timeit(iters)/iters) #run_rbow() From 6e3964114fd78b389aeaba86ba7390ed13920643 Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 9 Aug 2017 08:12:09 -0500 Subject: [PATCH 07/45] detect remove pandas: chip/pixel(rc) (-2094585/1682805)/(97/57), 1.524 --- rbow_detect.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/rbow_detect.py b/rbow_detect.py index c923943..8118a80 100644 --- a/rbow_detect.py +++ b/rbow_detect.py @@ -1,7 +1,7 @@ from datetime import datetime from test.shared import snap, rainbow import numpy as np -import pandas as pd +#import pandas as pd import ccd import timeit @@ -29,8 +29,8 @@ def dtstr_to_ordinal(dtstr, iso=True): #return datetime.strptime(dtstr, _fmt).toordinal() row, col = 97, 57 - rainbow_date_array = np.array(rbow['t'].values) - result = ccd.detect([dtstr_to_ordinal(str(pd.to_datetime(i)), False) for i in rainbow_date_array], + #rainbow_date_array = np.array(rbow['t'].values) + result = ccd.detect([dtstr_to_ordinal(i) for i in rbow['t'].values], rbow['blue'].values[:, row, col], rbow['green'].values[:, row, col], rbow['red'].values[:, row, col], @@ -38,7 +38,7 @@ def dtstr_to_ordinal(dtstr, iso=True): rbow['swir1'].values[:, row, col], rbow['swir2'].values[:, row, col], rbow['thermal'].values[:, row, col], - rbow['cfmask'].values[:, row, col], + np.array(rbow['cfmask'].values[:, row, col], dtype=int), params={}) return True From 4f6545f241686ba42ef15f3e6e60ed97198e4924 Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 9 Aug 2017 08:30:02 -0500 Subject: [PATCH 08/45] data org w/ rainbow+xarray 25.829 seconds --- rbow_rods.py | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 rbow_rods.py diff --git a/rbow_rods.py b/rbow_rods.py new file mode 100644 index 0000000..0dff098 --- /dev/null +++ b/rbow_rods.py @@ -0,0 +1,24 @@ +from test.shared import rainbow +import timeit + +def run_rbow(): + specs_url = 'http://localhost' + chips_url = 'http://localhost' + requested_ubids = ('LANDSAT_4/TM/SRB1','LANDSAT_4/TM/SRB2', 'LANDSAT_4/TM/SRB3', 'LANDSAT_4/TM/SRB4', + 'LANDSAT_4/TM/SRB5', 'LANDSAT_4/TM/BTB6', 'LANDSAT_4/TM/SRB7', 'LANDSAT_4/TM/PIXELQA', + 'LANDSAT_5/TM/SRB1', 'LANDSAT_5/TM/SRB2', 'LANDSAT_5/TM/SRB3', 'LANDSAT_5/TM/SRB4', + 'LANDSAT_5/TM/SRB5', 'LANDSAT_5/TM/BTB6', 'LANDSAT_5/TM/SRB7', 'LANDSAT_5/TM/PIXELQA', + 'LANDSAT_7/ETM/SRB1', 'LANDSAT_7/ETM/SRB2', 'LANDSAT_7/ETM/SRB3', 'LANDSAT_7/ETM/SRB4', + 'LANDSAT_7/ETM/SRB5', 'LANDSAT_7/ETM/BTB6', 'LANDSAT_7/ETM/SRB7', 'LANDSAT_7/ETM/PIXELQA', + 'LANDSAT_8/OLI_TIRS/SRB2', 'LANDSAT_8/OLI_TIRS/SRB3', 'LANDSAT_8/OLI_TIRS/SRB4', + 'LANDSAT_8/OLI_TIRS/SRB5', 'LANDSAT_8/OLI_TIRS/SRB6', 'LANDSAT_8/OLI_TIRS/SRB7', + 'LANDSAT_8/OLI_TIRS/BTB10', 'LANDSAT_8/OLI_TIRS/PIXELQA') + r = rainbow(-2094585, 1682805, '1982-01-01/2015-12-31', specs_url, chips_url, requested_ubids) + return True + + +if __name__ == '__main__': + iters = 5 + t = timeit.Timer("run_rbow()", setup="from __main__ import run_rbow") + print(t.timeit(iters)/iters) + From 76533d9442fcb78528f165e186a5cfa8497dddbc Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 9 Aug 2017 08:30:38 -0500 Subject: [PATCH 09/45] data org w/ lcmap-merlin 3.376 seconds --- merl_rods.py | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 merl_rods.py diff --git a/merl_rods.py b/merl_rods.py new file mode 100644 index 0000000..ca71808 --- /dev/null +++ b/merl_rods.py @@ -0,0 +1,25 @@ +from merlin.support import aardvark, chip_spec_queries, data_config +from merlin.timeseries import pyccd as pyccd_rods +import timeit + + +def get_rods(): + dc = data_config() + point = (dc['x'], dc['y']) + specurl = 'http://localhost' + chipurl = 'http://localhost' + specs_fn = aardvark.chip_specs + chips_fn = aardvark.chips + acquired = dc['acquired'] + queries = chip_spec_queries(chipurl) + pi = pyccd_rods(point, specurl, specs_fn, chipurl, chips_fn, acquired, queries) + return True + + +if __name__ == '__main__': + iters = 5 + t = timeit.Timer("get_rods()", setup="from __main__ import get_rods") + print(t.timeit(iters)/iters) + + + From 7003f27c7c56bdffa04fc7031f37218c29cf0e5d Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 9 Aug 2017 14:36:35 -0500 Subject: [PATCH 10/45] add QA_NAN value to default parameters --- ccd/parameters.yaml | 1 + 1 file changed, 1 insertion(+) diff --git a/ccd/parameters.yaml b/ccd/parameters.yaml index d121920..659a97a 100644 --- a/ccd/parameters.yaml +++ b/ccd/parameters.yaml @@ -59,6 +59,7 @@ QA_WATER: 2 QA_SHADOW: 3 QA_SNOW: 4 QA_CLOUD: 5 +QA_NAN: -1 ############################ From 72a5233bd2c1e2a7b058115c9995d349b7a486c1 Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 9 Aug 2017 14:42:58 -0500 Subject: [PATCH 11/45] detect use map() in qa unpackqa: chip/pixel(rc) (-2094585/1682805)/(97/57), 1.467 --- ccd/qa.py | 93 +++++++++++++++++++++++++++---------------------------- 1 file changed, 45 insertions(+), 48 deletions(-) diff --git a/ccd/qa.py b/ccd/qa.py index dcef1a6..c73baf8 100644 --- a/ccd/qa.py +++ b/ccd/qa.py @@ -4,53 +4,6 @@ from ccd.math_utils import calc_median, mask_value, count_value, mask_duplicate_values - -def checkbit(packedint, offset): - """ - Check for a bit flag in a given int value. - - Args: - packedint: bit packed int - offset: binary offset to check - - Returns: - bool - """ - bit = 1 << offset - - return (packedint & bit) > 0 - - -def qabitval(packedint, proc_params): - """ - Institute a hierarchy of qa values that may be flagged in the bitpacked - value. - - fill > cloud > shadow > snow > water > clear - - Args: - packedint: int value to bit check - proc_params: dictionary of processing parameters - - Returns: - offset value to use - """ - if checkbit(packedint, proc_params.QA_FILL): - return proc_params.QA_FILL - elif checkbit(packedint, proc_params.QA_CLOUD): - return proc_params.QA_CLOUD - elif checkbit(packedint, proc_params.QA_SHADOW): - return proc_params.QA_SHADOW - elif checkbit(packedint, proc_params.QA_SNOW): - return proc_params.QA_SNOW - elif checkbit(packedint, proc_params.QA_WATER): - return proc_params.QA_WATER - elif checkbit(packedint, proc_params.QA_CLEAR): - return proc_params.QA_CLEAR - else: - raise ValueError('Unsupported bitpacked QA value {}'.format(packedint)) - - def unpackqa(quality, proc_params): """ Transform the bit-packed QA values into their bit offset. @@ -63,7 +16,51 @@ def unpackqa(quality, proc_params): 1-d ndarray """ - return np.array([qabitval(q, proc_params) for q in quality]) + def checkbit(packedint, offset): + """ + Check for a bit flag in a given int value. + + Args: + packedint: bit packed int + offset: binary offset to check + + Returns: + bool + """ + bit = 1 << offset + return (packedint & bit) > 0 + + def qabitval(packedint): + """ + Institute a hierarchy of qa values that may be flagged in the bitpacked + value. + + fill > cloud > shadow > snow > water > clear + + Args: + packedint: int value to bit check + proc_params: dictionary of processing parameters + + Returns: + offset value to use + """ + if checkbit(packedint, proc_params['QA_FILL']): + return proc_params['QA_FILL'] + elif checkbit(packedint, proc_params['QA_CLOUD']): + return proc_params['QA_CLOUD'] + elif checkbit(packedint, proc_params['QA_SHADOW']): + return proc_params['QA_SHADOW'] + elif checkbit(packedint, proc_params['QA_SNOW']): + return proc_params['QA_SNOW'] + elif checkbit(packedint, proc_params['QA_WATER']): + return proc_params['QA_WATER'] + elif checkbit(packedint, proc_params['QA_CLEAR']): + return proc_params['QA_CLEAR'] + else: + raise ValueError('Unsupported bitpacked QA value {}'.format(packedint)) + + # map returns an iterable + return np.array(list(map(qabitval, quality))) def count_clear_or_water(quality, clear, water): From ecb8dcccf96ccd322f6afd65cfe124aed840c2e7 Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 9 Aug 2017 14:47:04 -0500 Subject: [PATCH 12/45] detect use map() in procedures.py initialize fitter: chip/pixel(rc) (-2094585/1682805)/(97/57), 1.463 --- ccd/procedures.py | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/ccd/procedures.py b/ccd/procedures.py index a498230..6c71d3e 100644 --- a/ccd/procedures.py +++ b/ccd/procedures.py @@ -440,9 +440,11 @@ def initialize(dates, observations, fitter_fn, model_window, processing_mask, spectral_obs = observations[:, processing_mask] log.debug('Generating models to check for stability') - models = [fitter_fn(period[model_window], spectrum, - fit_max_iter, avg_days_yr, 4) - for spectrum in spectral_obs[:, model_window]] + + def fitter_fn_wrapper(spectrum): + return fitter_fn(period[model_window], spectrum, fit_max_iter, avg_days_yr, 4) + + models = list(map(fitter_fn_wrapper, spectral_obs[:, model_window])) # If a model is not stable, then it is possible that a disturbance # exists somewhere in the observation window. The window shifts From b3dc6a83e4e8657f365b2fa3975421f810b6638f Mon Sep 17 00:00:00 2001 From: clay austin Date: Thu, 10 Aug 2017 10:56:55 -0500 Subject: [PATCH 13/45] reduce lookups in procedures.py --- ccd/procedures.py | 87 +++++++++++++++++++++++++---------------------- 1 file changed, 46 insertions(+), 41 deletions(-) diff --git a/ccd/procedures.py b/ccd/procedures.py index 6c71d3e..1611166 100644 --- a/ccd/procedures.py +++ b/ccd/procedures.py @@ -24,16 +24,21 @@ """ import logging import numpy as np +np_array = np.array +np_sum = np.sum from ccd import qa from ccd.change import enough_samples, enough_time,\ update_processing_mask, stable, determine_num_coefs, calc_residuals, \ find_closest_doy, change_magnitude, detect_change, detect_outlier from ccd.models import results_to_changemodel, tmask +tmask_tmask = tmask.tmask + from ccd.math_utils import kelvin_to_celsius, adjusted_variogram, euclidean_norm log = logging.getLogger(__name__) +ldebug = log.debug def fit_procedure(quality, proc_params): @@ -65,7 +70,7 @@ def fit_procedure(quality, proc_params): else: func = standard_procedure - log.debug('Procedure selected: %s', + ldebug('Procedure selected: %s', func.__name__) return func @@ -108,7 +113,7 @@ def permanent_snow_procedure(dates, observations, fitter_fn, quality, period = dates[processing_mask] spectral_obs = observations[:, processing_mask] - if np.sum(processing_mask) < meow_size: + if np_sum(processing_mask) < meow_size: return [], processing_mask models = [fitter_fn(period, spectrum, fit_max_iter, avg_days_yr, num_coef) @@ -122,7 +127,7 @@ def permanent_snow_procedure(dates, observations, fitter_fn, quality, end_day=dates[-1], break_day=0, magnitudes=magnitudes, - observation_count=np.sum(processing_mask), + observation_count=np_sum(processing_mask), change_probability=0, curve_qa=curve_qa) @@ -166,7 +171,7 @@ def insufficient_clear_procedure(dates, observations, fitter_fn, quality, period = dates[processing_mask] spectral_obs = observations[:, processing_mask] - if np.sum(processing_mask) < meow_size: + if np_sum(processing_mask) < meow_size: return [], processing_mask models = [fitter_fn(period, spectrum, fit_max_iter, avg_days_yr, num_coef) @@ -179,7 +184,7 @@ def insufficient_clear_procedure(dates, observations, fitter_fn, quality, end_day=dates[-1], break_day=0, magnitudes=magnitudes, - observation_count=np.sum(processing_mask), + observation_count=np_sum(processing_mask), change_probability=0, curve_qa=curve_qa) @@ -227,7 +232,7 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): thermal_idx = proc_params.THERMAL_IDX curve_qa = proc_params.CURVE_QA - log.debug('Build change models - dates: %s, obs: %s, ' + ldebug('Build change models - dates: %s, obs: %s, ' 'meow_size: %s, peek_size: %s', dates.shape[0], observations.shape, meow_size, peek_size) @@ -252,9 +257,9 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): processing_mask = qa.standard_procedure_filter(observations, quality, dates, proc_params) - obs_count = np.sum(processing_mask) + obs_count = np_sum(processing_mask) - log.debug('Processing mask initial count: %s', obs_count) + ldebug('Processing mask initial count: %s', obs_count) # Accumulator for models. This is a list of ChangeModel named tuples results = [] @@ -274,12 +279,12 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): # processing steps. See algorithm documentation for further information. variogram = adjusted_variogram(dates[processing_mask], observations[:, processing_mask]) - log.debug('Variogram values: %s', variogram) + ldebug('Variogram values: %s', variogram) # Only build models as long as sufficient data exists. while model_window.stop <= dates[processing_mask].shape[0] - meow_size: # Step 1: Initialize - log.debug('Initialize for change model #: %s', len(results) + 1) + ldebug('Initialize for change model #: %s', len(results) + 1) if len(results) > 0: start = False @@ -292,7 +297,7 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): # Catch for failure if init_models is None: - log.debug('Model initialization failed') + ldebug('Model initialization failed') break # Step 2: Lookback @@ -315,14 +320,14 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): start = False # Step 4: lookforward - log.debug('Extend change model') + ldebug('Extend change model') lf = lookforward(dates, observations, model_window, fitter_fn, processing_mask, variogram, proc_params) result, processing_mask, model_window = lf results.append(result) - log.debug('Accumulate results, {} so far'.format(len(results))) + ldebug('Accumulate results, {} so far'.format(len(results))) # Step 5: Iterate previous_end = model_window.stop @@ -338,7 +343,7 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): processing_mask, model_window, curve_qa['END'], proc_params)) - log.debug("change detection complete") + ldebug("change detection complete") return results, processing_mask @@ -377,7 +382,7 @@ def initialize(dates, observations, fitter_fn, model_window, processing_mask, period = dates[processing_mask] spectral_obs = observations[:, processing_mask] - log.debug('Initial %s', model_window) + ldebug('Initial %s', model_window) models = None while model_window.stop + meow_size < period.shape[0]: # Finding a sufficient window of time needs to run @@ -390,18 +395,18 @@ def initialize(dates, observations, fitter_fn, model_window, processing_mask, continue # stop = find_time_index(dates, model_window, meow_size, day_delta) # model_window = slice(model_window.start, stop) - log.debug('Checking window: %s', model_window) + ldebug('Checking window: %s', model_window) # Count outliers in the window, if there are too many outliers then # try again. - tmask_outliers = tmask.tmask(period[model_window], + tmask_outliers = tmask_tmask(period[model_window], spectral_obs[:, model_window], variogram, tmask_bands, tmask_scale, avg_days_yr) - tmask_count = np.sum(tmask_outliers) + tmask_count = np_sum(tmask_outliers) - log.debug('Number of Tmask outliers found: %s', tmask_count) + ldebug('Number of Tmask outliers found: %s', tmask_count) # Subset the data to the observations that currently under scrutiny # and remove the outliers identified by the tmask. @@ -410,7 +415,7 @@ def initialize(dates, observations, fitter_fn, model_window, processing_mask, # TODO should probably look at a different fit procedure to handle # the following case. if tmask_count == model_window.stop - model_window.start: - log.debug('Tmask identified all values as outliers') + ldebug('Tmask identified all values as outliers') model_window = slice(model_window.start, model_window.stop + 1) continue @@ -420,7 +425,7 @@ def initialize(dates, observations, fitter_fn, model_window, processing_mask, if not enough_time(tmask_period, day_delta) or \ not enough_samples(tmask_period, meow_size): - log.debug('Insufficient time or observations after Tmask, ' + ldebug('Insufficient time or observations after Tmask, ' 'extending model window') model_window = slice(model_window.start, model_window.stop + 1) @@ -439,7 +444,7 @@ def initialize(dates, observations, fitter_fn, model_window, processing_mask, period = dates[processing_mask] spectral_obs = observations[:, processing_mask] - log.debug('Generating models to check for stability') + ldebug('Generating models to check for stability') def fitter_fn_wrapper(spectrum): return fitter_fn(period[model_window], spectrum, fit_max_iter, avg_days_yr, 4) @@ -453,12 +458,12 @@ def fitter_fn_wrapper(spectrum): change_thresh, detection_bands): model_window = slice(model_window.start + 1, model_window.stop + 1) - log.debug('Unstable model, shift window to: %s', model_window) + ldebug('Unstable model, shift window to: %s', model_window) models = None continue else: - log.debug('Stable start found: %s', model_window) + ldebug('Stable start found: %s', model_window) break return model_window, models, processing_mask @@ -502,7 +507,7 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, # Step 4: lookforward. # The second step is to update a model until observations that do not # fit the model are found. - log.debug('lookforward initial model window: %s', model_window) + ldebug('lookforward initial model window: %s', model_window) # The fit_window pertains to which locations are used in the model # regression, while the model_window identifies the locations in which @@ -533,7 +538,7 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, # Used for comparison against fit_span model_span = period[model_window.stop - 1] - period[model_window.start] - log.debug('Detecting change for %s', peek_window) + ldebug('Detecting change for %s', peek_window) # If we have less than 24 observations covered by the model_window # or it the first iteration, then we always fit a new window @@ -542,12 +547,12 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, model_window.start] fit_window = model_window - log.debug('Retrain models, less than 24 samples') + ldebug('Retrain models, less than 24 samples') models = [fitter_fn(period[fit_window], spectrum, fit_max_iter, avg_days_yr, num_coefs) for spectrum in spectral_obs[:, fit_window]] - residuals = np.array([calc_residuals(period[peek_window], + residuals = np_array([calc_residuals(period[peek_window], spectral_obs[idx, peek_window], models[idx], avg_days_yr) for idx in range(observations.shape[0])]) @@ -560,7 +565,7 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, # expand past a threshold, then we need to fit new ones. # The 1.33 should be parametrized at some point. if model_span >= 1.33 * fit_span: - log.debug('Retrain models, model_span: %s fit_span: %s', + ldebug('Retrain models, model_span: %s fit_span: %s', model_span, fit_span) fit_span = period[model_window.stop - 1] - period[ model_window.start] @@ -570,7 +575,7 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, fit_max_iter, avg_days_yr, num_coefs) for spectrum in spectral_obs[:, fit_window]] - residuals = np.array([calc_residuals(period[peek_window], + residuals = np_array([calc_residuals(period[peek_window], spectral_obs[idx, peek_window], models[idx], avg_days_yr) for idx in range(observations.shape[0])]) @@ -592,13 +597,13 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, comp_rmse) if detect_change(magnitude, change_thresh): - log.debug('Change detected at: %s', peek_window.start) + ldebug('Change detected at: %s', peek_window.start) # Change was detected, return to parent method change = 1 break elif detect_outlier(magnitude[0], outlier_thresh): - log.debug('Outlier detected at: %s', peek_window.start) + ldebug('Outlier detected at: %s', peek_window.start) # Keep track of any outliers so they will be excluded from future # processing steps @@ -659,7 +664,7 @@ def lookback(dates, observations, model_window, models, previous_break, outlier_thresh = proc_params.OUTLIER_THRESHOLD avg_days_yr = proc_params.AVG_DAYS_YR - log.debug('Previous break: %s model window: %s', previous_break, model_window) + ldebug('Previous break: %s model window: %s', previous_break, model_window) period = dates[processing_mask] spectral_obs = observations[:, processing_mask] @@ -678,30 +683,30 @@ def lookback(dates, observations, model_window, models, previous_break, else: peek_window = slice(model_window.start - 1, previous_break - 1, -1) - log.debug('Considering index: %s using peek window: %s', + ldebug('Considering index: %s using peek window: %s', peek_window.start, peek_window) - residuals = np.array([calc_residuals(period[peek_window], + residuals = np_array([calc_residuals(period[peek_window], spectral_obs[idx, peek_window], models[idx], avg_days_yr) for idx in range(observations.shape[0])]) - # log.debug('Residuals for peek window: %s', residuals) + # ldebug('Residuals for peek window: %s', residuals) comp_rmse = [models[idx].rmse for idx in detection_bands] - log.debug('RMSE values for comparison: %s', comp_rmse) + ldebug('RMSE values for comparison: %s', comp_rmse) magnitude = change_magnitude(residuals[detection_bands, :], variogram[detection_bands], comp_rmse) if detect_change(magnitude, change_thresh): - log.debug('Change detected for index: %s', peek_window.start) + ldebug('Change detected for index: %s', peek_window.start) # change was detected, return to parent method break elif detect_outlier(magnitude[0], outlier_thresh): - log.debug('Outlier detected for index: %s', peek_window.start) + ldebug('Outlier detected for index: %s', peek_window.start) processing_mask = update_processing_mask(processing_mask, peek_window.start) @@ -713,7 +718,7 @@ def lookback(dates, observations, model_window, models, previous_break, model_window = slice(model_window.start - 1, model_window.stop - 1) continue - log.debug('Including index: %s', peek_window.start) + ldebug('Including index: %s', peek_window.start) model_window = slice(peek_window.start, model_window.stop) return model_window, processing_mask @@ -744,7 +749,7 @@ def catch(dates, observations, fitter_fn, processing_mask, model_window, fit_max_iter = proc_params.LASSO_MAX_ITER num_coef = proc_params.COEFFICIENT_MIN - log.debug('Catching observations: %s', model_window) + ldebug('Catching observations: %s', model_window) period = dates[processing_mask] spectral_obs = observations[:, processing_mask] From 19dde3f7bdebddbc3ed9c416c60f050e6ca39c15 Mon Sep 17 00:00:00 2001 From: clay austin Date: Fri, 11 Aug 2017 12:35:11 -0500 Subject: [PATCH 14/45] remove sklearn import from robust_fit, unused --- ccd/models/robust_fit.py | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/ccd/models/robust_fit.py b/ccd/models/robust_fit.py index 02eb781..6e26aea 100644 --- a/ccd/models/robust_fit.py +++ b/ccd/models/robust_fit.py @@ -15,13 +15,10 @@ # Don't alias to ``np`` until fix is implemented # https://github.com/numba/numba/issues/1559 import numpy -import sklearn import scipy # from yatsm.accel import try_jit -EPS = numpy.finfo('float').eps - # Weight scaling methods # @try_jit(nopython=True) @@ -101,7 +98,7 @@ def _weight_fit(X, y, w): # Robust regression -class RLM(sklearn.base.BaseEstimator): +class RLM(object): """ Robust Linear Model using Iterative Reweighted Least Squares (RIRLS) Perform robust fitting regression via iteratively reweighted least squares @@ -158,10 +155,11 @@ def fit(self, X, y): chaining """ + EPS = numpy.finfo('float').eps + self.coef_, resid = _weight_fit(X, y, numpy.ones_like(y)) self.scale = self.scale_est(resid, c=self.scale_constant) - Q, R = scipy.linalg.qr(X) E = X.dot(numpy.linalg.inv(R[0:X.shape[1],0:X.shape[1]])) const_h= numpy.ones(X.shape[0])*0.9999 From 3510a0b78b93aa8f00de72c582600a7a15fce130 Mon Sep 17 00:00:00 2001 From: clay austin Date: Fri, 11 Aug 2017 12:36:17 -0500 Subject: [PATCH 15/45] ccd/qa.py map to list comp, np.array pointer --- ccd/qa.py | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/ccd/qa.py b/ccd/qa.py index c73baf8..4bdde4f 100644 --- a/ccd/qa.py +++ b/ccd/qa.py @@ -1,9 +1,11 @@ """Filters for pre-processing change model inputs. """ import numpy as np +np_array = np.array from ccd.math_utils import calc_median, mask_value, count_value, mask_duplicate_values + def unpackqa(quality, proc_params): """ Transform the bit-packed QA values into their bit offset. @@ -59,8 +61,7 @@ def qabitval(packedint): else: raise ValueError('Unsupported bitpacked QA value {}'.format(packedint)) - # map returns an iterable - return np.array(list(map(qabitval, quality))) + return np_array([qabitval(i) for i in quality]) def count_clear_or_water(quality, clear, water): From dd240ab2e3e3ea205b68452ee707ffd2cf3e86e9 Mon Sep 17 00:00:00 2001 From: clay austin Date: Fri, 11 Aug 2017 12:38:48 -0500 Subject: [PATCH 16/45] dot method pointers, move lasso inclusion --- ccd/models/lasso.py | 12 +-- ccd/models/tmask.py | 28 ++++--- ccd/procedures.py | 189 +++++++++++++++++++++++--------------------- 3 files changed, 124 insertions(+), 105 deletions(-) diff --git a/ccd/models/lasso.py b/ccd/models/lasso.py index 8b0e489..76836e9 100644 --- a/ccd/models/lasso.py +++ b/ccd/models/lasso.py @@ -1,11 +1,11 @@ from sklearn import linear_model import numpy as np -from cachetools import LRUCache +#from cachetools import LRUCache from ccd.models import FittedModel from ccd.math_utils import calc_rmse -cache = LRUCache(maxsize=1000) +#cache = LRUCache(maxsize=1000) def __coefficient_cache_key(observation_dates): @@ -44,7 +44,7 @@ def coefficient_matrix(dates, avg_days_yr, num_coefficients): return matrix -def fitted_model(dates, spectra_obs, max_iter, avg_days_yr, num_coefficients): +def fitted_model(dates, spectra_obs, max_iter, avg_days_yr, num_coefficients, lm): """Create a fully fitted lasso model. Args: @@ -63,8 +63,10 @@ def fitted_model(dates, spectra_obs, max_iter, avg_days_yr, num_coefficients): """ coef_matrix = coefficient_matrix(dates, avg_days_yr, num_coefficients) - lasso = linear_model.Lasso(max_iter=max_iter) - model = lasso.fit(coef_matrix, spectra_obs) + #lasso = linear_model.Lasso(max_iter=max_iter) + #model = lasso.fit(coef_matrix, spectra_obs) + model = lm.fit(coef_matrix, spectra_obs) + predictions = model.predict(coef_matrix) rmse, residuals = calc_rmse(spectra_obs, predictions) diff --git a/ccd/models/tmask.py b/ccd/models/tmask.py index a359d8f..e0fbb46 100644 --- a/ccd/models/tmask.py +++ b/ccd/models/tmask.py @@ -6,6 +6,13 @@ log = logging.getLogger(__name__) +np_pi = np.pi +np_ceil = np.ceil +np_ones = np.ones +np_cos = np.cos +np_sin = np.sin +np_zeros = np.zeros +np_abs = np.abs def tmask_coefficient_matrix(dates, avg_days_yr): """Coefficient matrix that is used for Tmask modeling @@ -16,14 +23,14 @@ def tmask_coefficient_matrix(dates, avg_days_yr): Returns: Populated numpy array with coefficient values """ - annual_cycle = 2*np.pi/avg_days_yr + annual_cycle = 2*np_pi/avg_days_yr observation_cycle = annual_cycle / np.ceil((dates[-1] - dates[0]) / avg_days_yr) - matrix = np.ones(shape=(dates.shape[0], 5), order='F') - matrix[:, 0] = np.cos(annual_cycle * dates) - matrix[:, 1] = np.sin(annual_cycle * dates) - matrix[:, 2] = np.cos(observation_cycle * dates) - matrix[:, 3] = np.sin(observation_cycle * dates) + matrix = np_ones(shape=(dates.shape[0], 5), order='F') + matrix[:, 0] = np_cos(annual_cycle * dates) + matrix[:, 1] = np_sin(annual_cycle * dates) + matrix[:, 2] = np_cos(observation_cycle * dates) + matrix[:, 3] = np_sin(observation_cycle * dates) return matrix @@ -53,14 +60,15 @@ def tmask(dates, observations, variogram, bands, t_const, avg_days_yr): # Accumulator for outliers. This starts off as a list of False values # because we don't assume anything is an outlier. _, sample_count = observations.shape - outliers = np.zeros(sample_count, dtype=bool) + outliers = np_zeros(sample_count, dtype=bool) - # For each band, determine if the delta between predeicted and actual + # For each band, determine if the delta between predicted and actual # values exceeds the threshold. If it does, then it is an outlier. + regression_fit = regression.fit for band_ix in bands: - fit = regression.fit(tmask_matrix, observations[band_ix]) + fit = regression_fit(tmask_matrix, observations[band_ix]) predicted = fit.predict(tmask_matrix) - outliers += np.abs(predicted - observations[band_ix]) > variogram[band_ix] * t_const + outliers += np_abs(predicted - observations[band_ix]) > variogram[band_ix] * t_const # Keep all observations that aren't outliers. return outliers diff --git a/ccd/procedures.py b/ccd/procedures.py index 1b4a07d..462cc0b 100644 --- a/ccd/procedures.py +++ b/ccd/procedures.py @@ -32,13 +32,22 @@ update_processing_mask, stable, determine_num_coefs, calc_residuals, \ find_closest_doy, change_magnitude, detect_change, detect_outlier from ccd.models import results_to_changemodel, tmask -tmask_tmask = tmask.tmask - from ccd.math_utils import kelvin_to_celsius, adjusted_variogram, euclidean_norm +#testing +from sklearn import linear_model +lm_lasso = linear_model.Lasso log = logging.getLogger(__name__) -ldebug = log.debug + +ldebug = log.debug +tmask_tmask = tmask.tmask +qa_enough_clear = qa.enough_clear +qa_enough_snow = qa.enough_snow +qa_snow_procedure_filter = qa.snow_procedure_filter +qa_insufficient_clear_filter = qa.insufficient_clear_filter +qa_standard_procedure_filter = qa.standard_procedure_filter +np_zeros = np.zeros def fit_procedure(quality, proc_params): @@ -55,15 +64,15 @@ def fit_procedure(quality, proc_params): the curves """ # TODO do this better - clear = proc_params.QA_CLEAR - water = proc_params.QA_WATER - fill = proc_params.QA_FILL - snow = proc_params.QA_SNOW + clear = proc_params.QA_CLEAR + water = proc_params.QA_WATER + fill = proc_params.QA_FILL + snow = proc_params.QA_SNOW clear_thresh = proc_params.CLEAR_PCT_THRESHOLD - snow_thresh = proc_params.SNOW_PCT_THRESHOLD + snow_thresh = proc_params.SNOW_PCT_THRESHOLD - if not qa.enough_clear(quality, clear, water, fill, clear_thresh): - if qa.enough_snow(quality, clear, water, snow, snow_thresh): + if not qa_enough_clear(quality, clear, water, fill, clear_thresh): + if qa_enough_snow(quality, clear, water, snow, snow_thresh): func = permanent_snow_procedure else: func = insufficient_clear_procedure @@ -101,13 +110,13 @@ def permanent_snow_procedure(dates, observations, fitter_fn, quality, for model fitting """ # TODO do this better - meow_size = proc_params.MEOW_SIZE - curve_qa = proc_params.CURVE_QA['PERSIST_SNOW'] - avg_days_yr = proc_params.AVG_DAYS_YR + meow_size = proc_params.MEOW_SIZE + curve_qa = proc_params.CURVE_QA['PERSIST_SNOW'] + avg_days_yr = proc_params.AVG_DAYS_YR fit_max_iter = proc_params.LASSO_MAX_ITER - num_coef = proc_params.COEFFICIENT_MIN + num_coef = proc_params.COEFFICIENT_MIN - processing_mask = qa.snow_procedure_filter(observations, quality, + processing_mask = qa_snow_procedure_filter(observations, quality, dates, proc_params) period = dates[processing_mask] @@ -119,7 +128,7 @@ def permanent_snow_procedure(dates, observations, fitter_fn, quality, models = [fitter_fn(period, spectrum, fit_max_iter, avg_days_yr, num_coef) for spectrum in spectral_obs] - magnitudes = np.zeros(shape=(observations.shape[0],)) + magnitudes = np_zeros(shape=(observations.shape[0],)) # White space is cheap, so let's use it result = results_to_changemodel(fitted_models=models, @@ -159,13 +168,13 @@ def insufficient_clear_procedure(dates, observations, fitter_fn, quality, for model fitting """ # TODO do this better - meow_size = proc_params.MEOW_SIZE, - curve_qa = proc_params.CURVE_QA['INSUF_CLEAR'] - avg_days_yr = proc_params.AVG_DAYS_YR + meow_size = proc_params.MEOW_SIZE, + curve_qa = proc_params.CURVE_QA['INSUF_CLEAR'] + avg_days_yr = proc_params.AVG_DAYS_YR fit_max_iter = proc_params.LASSO_MAX_ITER - num_coef = proc_params.COEFFICIENT_MIN + num_coef = proc_params.COEFFICIENT_MIN - processing_mask = qa.insufficient_clear_filter(observations, quality, + processing_mask = qa_insufficient_clear_filter(observations, quality, dates, proc_params) period = dates[processing_mask] @@ -177,7 +186,7 @@ def insufficient_clear_procedure(dates, observations, fitter_fn, quality, models = [fitter_fn(period, spectrum, fit_max_iter, avg_days_yr, num_coef) for spectrum in spectral_obs] - magnitudes = np.zeros(shape=(observations.shape[0],)) + magnitudes = np_zeros(shape=(observations.shape[0],)) result = results_to_changemodel(fitted_models=models, start_day=dates[0], @@ -227,12 +236,14 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): for model fitting """ # TODO do this better - meow_size = proc_params.MEOW_SIZE - peek_size = proc_params.PEEK_SIZE - thermal_idx = proc_params.THERMAL_IDX - curve_qa = proc_params.CURVE_QA + meow_size = proc_params.MEOW_SIZE + peek_size = proc_params.PEEK_SIZE + thermal_idx = proc_params.THERMAL_IDX + curve_qa = proc_params.CURVE_QA detection_bands = proc_params.DETECTION_BANDS + lasso = lm_lasso(max_iter=proc_params.LASSO_MAX_ITER) + ldebug('Build change models - dates: %s, obs: %s, ' 'meow_size: %s, peek_size: %s', dates.shape[0], observations.shape, meow_size, peek_size) @@ -255,7 +266,7 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): # The masked module from numpy does not seem to really add anything of # benefit to what we need to do, plus scikit may still be incompatible # with them. - processing_mask = qa.standard_procedure_filter(observations, quality, + processing_mask = qa_standard_procedure_filter(observations, quality, dates, proc_params) obs_count = np_sum(processing_mask) @@ -292,7 +303,7 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): # Make things a little more readable by breaking this apart # catch return -> break apart into components initialized = initialize(dates, observations, fitter_fn, model_window, - processing_mask, variogram, proc_params) + processing_mask, variogram, proc_params, lasso) model_window, init_models, processing_mask = initialized @@ -317,13 +328,13 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): fitter_fn, processing_mask, slice(previous_end, model_window.start), - curve_qa['START'], proc_params)) + curve_qa['START'], proc_params, lasso)) start = False # Step 4: lookforward ldebug('Extend change model') lf = lookforward(dates, observations, model_window, fitter_fn, - processing_mask, variogram, proc_params) + processing_mask, variogram, proc_params, lasso) result, processing_mask, model_window = lf results.append(result) @@ -342,7 +353,7 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): model_window = slice(previous_end, dates[processing_mask].shape[0]) results.append(catch(dates, observations, fitter_fn, processing_mask, model_window, - curve_qa['END'], proc_params)) + curve_qa['END'], proc_params, lasso)) ldebug("change detection complete") @@ -350,7 +361,7 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): def initialize(dates, observations, fitter_fn, model_window, processing_mask, - variogram, proc_params): + variogram, proc_params, lasso): """ Determine a good starting point at which to build off of for the subsequent process of change detection, both forward and backward. @@ -371,14 +382,14 @@ def initialize(dates, observations, fitter_fn, model_window, processing_mask, namedtuple: fitted regression models """ # TODO do this better - meow_size = proc_params.MEOW_SIZE - day_delta = proc_params.DAY_DELTA + meow_size = proc_params.MEOW_SIZE + day_delta = proc_params.DAY_DELTA detection_bands = proc_params.DETECTION_BANDS - tmask_bands = proc_params.TMASK_BANDS - change_thresh = proc_params.CHANGE_THRESHOLD - tmask_scale = proc_params.T_CONST - avg_days_yr = proc_params.AVG_DAYS_YR - fit_max_iter = proc_params.LASSO_MAX_ITER + tmask_bands = proc_params.TMASK_BANDS + change_thresh = proc_params.CHANGE_THRESHOLD + tmask_scale = proc_params.T_CONST + avg_days_yr = proc_params.AVG_DAYS_YR + fit_max_iter = proc_params.LASSO_MAX_ITER period = dates[processing_mask] spectral_obs = observations[:, processing_mask] @@ -439,19 +450,15 @@ def initialize(dates, observations, fitter_fn, model_window, processing_mask, model_window) # The model window now actually refers to a smaller slice - model_window = slice(model_window.start, - model_window.stop - tmask_count) + model_window = slice(model_window.start, model_window.stop - tmask_count) # Update the subset period = dates[processing_mask] spectral_obs = observations[:, processing_mask] ldebug('Generating models to check for stability') - def fitter_fn_wrapper(spectrum): - return fitter_fn(period[model_window], spectrum, fit_max_iter, avg_days_yr, 4) - - models = list(map(fitter_fn_wrapper, spectral_obs[detection_bands, model_window])) - + models = [fitter_fn(period[model_window], spectrum, fit_max_iter, avg_days_yr, 4, lasso) for spectrum in + spectral_obs[detection_bands, model_window]] # If a model is not stable, then it is possible that a disturbance # exists somewhere in the observation window. The window shifts @@ -472,7 +479,7 @@ def fitter_fn_wrapper(spectrum): def lookforward(dates, observations, model_window, fitter_fn, processing_mask, - variogram, proc_params): + variogram, proc_params, lasso): """Increase observation window until change is detected or we are out of observations. @@ -495,16 +502,16 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, slice: model window """ # TODO do this better - peek_size = proc_params.PEEK_SIZE - coef_min = proc_params.COEFFICIENT_MIN - coef_mid = proc_params.COEFFICIENT_MID - coef_max = proc_params.COEFFICIENT_MAX - num_obs_fact = proc_params.NUM_OBS_FACTOR + peek_size = proc_params.PEEK_SIZE + coef_min = proc_params.COEFFICIENT_MIN + coef_mid = proc_params.COEFFICIENT_MID + coef_max = proc_params.COEFFICIENT_MAX + num_obs_fact = proc_params.NUM_OBS_FACTOR detection_bands = proc_params.DETECTION_BANDS - change_thresh = proc_params.CHANGE_THRESHOLD - outlier_thresh = proc_params.OUTLIER_THRESHOLD - avg_days_yr = proc_params.AVG_DAYS_YR - fit_max_iter = proc_params.LASSO_MAX_ITER + change_thresh = proc_params.CHANGE_THRESHOLD + outlier_thresh = proc_params.OUTLIER_THRESHOLD + avg_days_yr = proc_params.AVG_DAYS_YR + fit_max_iter = proc_params.LASSO_MAX_ITER # Used for loops. num_detectbands = len(detection_bands) @@ -559,7 +566,7 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, fit_window = model_window ldebug('Retrain models, less than 24 samples') models = [fitter_fn(period[fit_window], spectrum, - fit_max_iter, avg_days_yr, num_coefs) + fit_max_iter, avg_days_yr, num_coefs, lasso) for spectrum in spectral_obs[detection_bands, fit_window]] residuals = np_array([calc_residuals(period[peek_window], @@ -581,7 +588,7 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, fit_window = model_window models = [fitter_fn(period[fit_window], spectrum, - fit_max_iter, avg_days_yr, num_coefs) + fit_max_iter, avg_days_yr, num_coefs, lasso) for spectrum in spectral_obs[detection_bands, fit_window]] residuals = np_array([calc_residuals(period[peek_window], @@ -628,7 +635,7 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, # Exiting LookForward means that we now need to fit all the bands. models = [fitter_fn(period[fit_window], spectrum, - fit_max_iter, avg_days_yr, num_coefs) + fit_max_iter, avg_days_yr, num_coefs, lasso) for spectrum in spectral_obs[:, fit_window]] residuals = np_array([calc_residuals(period[peek_window], @@ -636,13 +643,15 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, models[idx], avg_days_yr) for idx in range(observations.shape[0])]) + model_window_start = model_window.start + model_window_stop = model_window.stop result = results_to_changemodel(fitted_models=models, - start_day=period[model_window.start], - end_day=period[model_window.stop - 1], + start_day=period[model_window_start], + end_day=period[model_window_stop - 1], break_day=period[peek_window.start], magnitudes=np.median(residuals, axis=1), observation_count=( - model_window.stop - model_window.start), + model_window_stop - model_window_start), change_probability=change, curve_qa=num_coefs) @@ -674,12 +683,11 @@ def lookback(dates, observations, model_window, models, previous_break, array: indices of data that have been flagged as outliers """ # TODO do this better - peek_size = proc_params.PEEK_SIZE + peek_size = proc_params.PEEK_SIZE detection_bands = proc_params.DETECTION_BANDS - change_thresh = proc_params.CHANGE_THRESHOLD - outlier_thresh = proc_params.OUTLIER_THRESHOLD - avg_days_yr = proc_params.AVG_DAYS_YR - + change_thresh = proc_params.CHANGE_THRESHOLD + outlier_thresh = proc_params.OUTLIER_THRESHOLD + avg_days_yr = proc_params.AVG_DAYS_YR ldebug('Previous break: %s model window: %s', previous_break, model_window) @@ -697,15 +705,15 @@ def lookback(dates, observations, model_window, models, previous_break, # Important note about python slice objects, start is inclusive and # stop is exclusive, regardless of direction/step - if model_window.start - previous_break > peek_size: - peek_window = slice(model_window.start - 1, model_window.start - peek_size, -1) - elif model_window.start - peek_size <= 0: - peek_window = slice(model_window.start - 1, None, -1) + model_window_start = model_window.start + if model_window_start - previous_break > peek_size: + peek_window = slice(model_window_start - 1, model_window_start - peek_size, -1) + elif model_window_start - peek_size <= 0: + peek_window = slice(model_window_start - 1, None, -1) else: - peek_window = slice(model_window.start - 1, previous_break - 1, -1) + peek_window = slice(model_window_start - 1, previous_break - 1, -1) - ldebug('Considering index: %s using peek window: %s', - peek_window.start, peek_window) + ldebug('Considering index: %s using peek window: %s', peek_window.start, peek_window) residuals = np_array([calc_residuals(period[peek_window], spectral_obs[detection_bands][idx, peek_window], @@ -720,21 +728,21 @@ def lookback(dates, observations, model_window, models, previous_break, magnitude = change_magnitude(residuals, variogram, comp_rmse) + peek_window_start = peek_window.start if detect_change(magnitude, change_thresh): - ldebug('Change detected for index: %s', peek_window.start) + ldebug('Change detected for index: %s', peek_window_start) # change was detected, return to parent method break elif detect_outlier(magnitude[0], outlier_thresh): - ldebug('Outlier detected for index: %s', peek_window.start) - processing_mask = update_processing_mask(processing_mask, - peek_window.start) + ldebug('Outlier detected for index: %s', peek_window_start) + processing_mask = update_processing_mask(processing_mask, peek_window_start) period = dates[processing_mask] spectral_obs = observations[:, processing_mask] # Because this location was used in determining the model_window # passed in, we must now account for removing it. - model_window = slice(model_window.start - 1, model_window.stop - 1) + model_window = slice(model_window_start - 1, model_window.stop - 1) continue ldebug('Including index: %s', peek_window.start) @@ -744,7 +752,7 @@ def lookback(dates, observations, model_window, models, previous_break, def catch(dates, observations, fitter_fn, processing_mask, model_window, - curve_qa, proc_params): + curve_qa, proc_params, lasso): """ Handle special cases where general models just need to be fitted and return their results. @@ -764,9 +772,9 @@ def catch(dates, observations, fitter_fn, processing_mask, model_window, """ # TODO do this better - avg_days_yr = proc_params.AVG_DAYS_YR + avg_days_yr = proc_params.AVG_DAYS_YR fit_max_iter = proc_params.LASSO_MAX_ITER - num_coef = proc_params.COEFFICIENT_MIN + num_coef = proc_params.COEFFICIENT_MIN ldebug('Catching observations: %s', model_window) period = dates[processing_mask] @@ -776,22 +784,23 @@ def catch(dates, observations, fitter_fn, processing_mask, model_window, model_period = period[model_window] model_spectral = spectral_obs[:, model_window] - models = [fitter_fn(model_period, spectrum, fit_max_iter, avg_days_yr, - num_coef) - for spectrum in model_spectral] + models = [fitter_fn(model_period, spectrum, fit_max_iter, avg_days_yr, num_coef, lasso) for spectrum in model_spectral] + + model_window_start = model_window.start + model_window_stop = model_window.stop try: - break_day = period[model_window.stop] + break_day = period[model_window_stop] except: break_day = period[-1] result = results_to_changemodel(fitted_models=models, - start_day=period[model_window.start], - end_day=period[model_window.stop - 1], + start_day=period[model_window_start], + end_day=period[model_window_stop - 1], break_day=break_day, - magnitudes=np.zeros(shape=(7,)), + magnitudes=np_zeros(shape=(7,)), observation_count=( - model_window.stop - model_window.start), + model_window_stop - model_window_start), change_probability=0, curve_qa=curve_qa) From a8b962035bf75cde6d793b62bc7007482df8dcd7 Mon Sep 17 00:00:00 2001 From: clay austin Date: Sun, 13 Aug 2017 07:25:46 -0500 Subject: [PATCH 17/45] WIP extracting lasso code --- ccd/models/lasso.py | 16 +- ccd/models/lasso_fit.py | 329 ++++++++++++++++++++++++++++++++++++++++ rbow_detect.py | 12 +- to_svg.sh | 6 + 4 files changed, 350 insertions(+), 13 deletions(-) create mode 100644 ccd/models/lasso_fit.py create mode 100755 to_svg.sh diff --git a/ccd/models/lasso.py b/ccd/models/lasso.py index 76836e9..d284819 100644 --- a/ccd/models/lasso.py +++ b/ccd/models/lasso.py @@ -1,18 +1,13 @@ -from sklearn import linear_model import numpy as np -#from cachetools import LRUCache - from ccd.models import FittedModel from ccd.math_utils import calc_rmse -#cache = LRUCache(maxsize=1000) - +from ccd.models.lasso_fit import ElasticNet def __coefficient_cache_key(observation_dates): return tuple(observation_dates) -# @cached(cache=cache, key=__coefficient_cache_key) def coefficient_matrix(dates, avg_days_yr, num_coefficients): """ Fourier transform function to be used for the matrix of inputs for @@ -44,6 +39,7 @@ def coefficient_matrix(dates, avg_days_yr, num_coefficients): return matrix + def fitted_model(dates, spectra_obs, max_iter, avg_days_yr, num_coefficients, lm): """Create a fully fitted lasso model. @@ -62,12 +58,8 @@ def fitted_model(dates, spectra_obs, max_iter, avg_days_yr, num_coefficients, lm fitted_model(dates, obs).predict(...) """ coef_matrix = coefficient_matrix(dates, avg_days_yr, num_coefficients) - - #lasso = linear_model.Lasso(max_iter=max_iter) - #model = lasso.fit(coef_matrix, spectra_obs) - model = lm.fit(coef_matrix, spectra_obs) - - + #model = lm.fit(coef_matrix, spectra_obs) + model = ElasticNet().fit(coef_matrix, spectra_obs) predictions = model.predict(coef_matrix) rmse, residuals = calc_rmse(spectra_obs, predictions) diff --git a/ccd/models/lasso_fit.py b/ccd/models/lasso_fit.py new file mode 100644 index 0000000..05ef003 --- /dev/null +++ b/ccd/models/lasso_fit.py @@ -0,0 +1,329 @@ +import numpy as np +import warnings +import six +import scipy.sparse as sp + +#from sklearn.utils import check_array, check_X_y +from sklearn.utils import check_X_y + +from sklearn.linear_model.base import _pre_fit +from sklearn.externals.six.moves import xrange +from sklearn.linear_model import enet_path +from sklearn.linear_model.base import LinearModel +from sklearn.base import RegressorMixin + +from abc import ABCMeta +from sklearn.base import BaseEstimator +from sklearn.utils.validation import check_is_fitted +from sklearn.utils.extmath import safe_sparse_dot + +def _assert_all_finite(X): + """Like assert_all_finite, but only for ndarray.""" + X = np.asanyarray(X) + # First try an O(n) time, O(1) space solution for the common case that + # everything is finite; fall back to O(n) space np.isfinite to prevent + # false positives from overflow in sum method. + if (X.dtype.char in np.typecodes['AllFloat'] and not np.isfinite(X.sum()) + and not np.isfinite(X).all()): + raise ValueError("Input contains NaN, infinity" + " or a value too large for %r." % X.dtype) + + +def _ensure_sparse_format(spmatrix, accept_sparse, dtype, copy, + force_all_finite): + if accept_sparse in [None, False]: + raise TypeError('A sparse matrix was passed, but dense ' + 'data is required. Use X.toarray() to ' + 'convert to a dense numpy array.') + if dtype is None: + dtype = spmatrix.dtype + + changed_format = False + if (isinstance(accept_sparse, (list, tuple)) + and spmatrix.format not in accept_sparse): + # create new with correct sparse + spmatrix = spmatrix.asformat(accept_sparse[0]) + changed_format = True + + if dtype != spmatrix.dtype: + # convert dtype + spmatrix = spmatrix.astype(dtype) + elif copy and not changed_format: + # force copy + spmatrix = spmatrix.copy() + + if force_all_finite: + if not hasattr(spmatrix, "data"): + warnings.warn("Can't check %s sparse matrix for nan or inf." + % spmatrix.format) + else: + _assert_all_finite(spmatrix.data) + return spmatrix + + +def check_array(array, accept_sparse=None, dtype="numeric", order=None, + copy=False, force_all_finite=True, ensure_2d=True, + allow_nd=False, ensure_min_samples=1, ensure_min_features=1, + warn_on_dtype=False, estimator=None): + if isinstance(accept_sparse, str): + accept_sparse = [accept_sparse] + + # store whether originally we wanted numeric dtype + dtype_numeric = dtype == "numeric" + + dtype_orig = getattr(array, "dtype", None) + if not hasattr(dtype_orig, 'kind'): + # not a data type (e.g. a column named dtype in a pandas DataFrame) + dtype_orig = None + + if dtype_numeric: + if dtype_orig is not None and dtype_orig.kind == "O": + # if input is object, convert to float. + dtype = np.float64 + else: + dtype = None + + if isinstance(dtype, (list, tuple)): + if dtype_orig is not None and dtype_orig in dtype: + # no dtype conversion required + dtype = None + else: + # dtype conversion required. Let's select the first element of the + # list of accepted types. + dtype = dtype[0] + + if estimator is not None: + if isinstance(estimator, six.string_types): + estimator_name = estimator + else: + estimator_name = estimator.__class__.__name__ + else: + estimator_name = "Estimator" + context = " by %s" % estimator_name if estimator is not None else "" + + if sp.issparse(array): + array = _ensure_sparse_format(array, accept_sparse, dtype, copy, + force_all_finite) + else: + array = np.array(array, dtype=dtype, order=order, copy=copy) + + if ensure_2d: + if array.ndim == 1: + if ensure_min_samples >= 2: + raise ValueError("%s expects at least 2 samples provided " + "in a 2 dimensional array-like input" + % estimator_name) + warnings.warn( + "Passing 1d arrays as data is deprecated in 0.17 and will " + "raise ValueError in 0.19. Reshape your data either using " + "X.reshape(-1, 1) if your data has a single feature or " + "X.reshape(1, -1) if it contains a single sample.", + DeprecationWarning) + array = np.atleast_2d(array) + # To ensure that array flags are maintained + array = np.array(array, dtype=dtype, order=order, copy=copy) + + # make sure we actually converted to numeric: + if dtype_numeric and array.dtype.kind == "O": + array = array.astype(np.float64) + if not allow_nd and array.ndim >= 3: + raise ValueError("Found array with dim %d. %s expected <= 2." + % (array.ndim, estimator_name)) + if force_all_finite: + _assert_all_finite(array) + + shape_repr = _shape_repr(array.shape) + if ensure_min_samples > 0: + n_samples = _num_samples(array) + if n_samples < ensure_min_samples: + raise ValueError("Found array with %d sample(s) (shape=%s) while a" + " minimum of %d is required%s." + % (n_samples, shape_repr, ensure_min_samples, + context)) + + if ensure_min_features > 0 and array.ndim == 2: + n_features = array.shape[1] + if n_features < ensure_min_features: + raise ValueError("Found array with %d feature(s) (shape=%s) while" + " a minimum of %d is required%s." + % (n_features, shape_repr, ensure_min_features, + context)) + + if warn_on_dtype and dtype_orig is not None and array.dtype != dtype_orig: + msg = ("Data with input dtype %s was converted to %s%s." + % (dtype_orig, array.dtype, context)) + warnings.warn(msg, _DataConversionWarning) + return array + + +class LinearModel(six.with_metaclass(ABCMeta, BaseEstimator)): + """Base class for Linear Models""" + + # @abstractmethod + # def fit(self, X, y): + # """Fit model.""" + # + # @deprecated(" and will be removed in 0.19.") + # def decision_function(self, X): + # """Decision function of the linear model. + # + # Parameters + # ---------- + # X : {array-like, sparse matrix}, shape = (n_samples, n_features) + # Samples. + # + # Returns + # ------- + # C : array, shape = (n_samples,) + # Returns predicted values. + # """ + # return self._decision_function(X) + + def _decision_function(self, X): + check_is_fitted(self, "coef_") + + X = check_array(X, accept_sparse=['csr', 'csc', 'coo']) + return safe_sparse_dot(X, self.coef_.T, + dense_output=True) + self.intercept_ + + def predict(self, X): + """Predict using the linear model + + Parameters + ---------- + X : {array-like, sparse matrix}, shape = (n_samples, n_features) + Samples. + + Returns + ------- + C : array, shape = (n_samples,) + Returns predicted values. + """ + return self._decision_function(X) + + #_preprocess_data = staticmethod(_preprocess_data) + + +class ElasticNet(LinearModel, RegressorMixin): + def __init__(self): + self.alpha = 1.0 + self.l1_ratio = 0.5 + self.coef_ = None + self.fit_intercept = True + self.normalize = False + self.precompute = False + self.max_iter = 1000 + self.copy_X = True + self.tol = 1e-4 + self.warm_start = False + self.positive = False + self.intercept_ = 0.0 + self.random_state = None + self.selection = 'cyclic' + + self.path = enet_path + + def fit(self, X, y, check_input=True): + """Fit model with coordinate descent. + + Parameters + ----------- + X : ndarray or scipy.sparse matrix, (n_samples, n_features) + Data + + y : ndarray, shape (n_samples,) or (n_samples, n_targets) + Target + + check_input : boolean, (default=True) + Allow to bypass several input checking. + Don't use this parameter unless you know what you do. + + Notes + ----- + + Coordinate descent is an algorithm that considers each column of + data at a time hence it will automatically convert the X input + as a Fortran-contiguous numpy array if necessary. + + To avoid memory re-allocation it is advised to allocate the + initial data in memory directly using that format. + """ + + if self.alpha == 0: + warnings.warn("With alpha=0, this algorithm does not converge " + "well. You are advised to use the LinearRegression " + "estimator", stacklevel=2) + + if isinstance(self.precompute, six.string_types): + raise ValueError('precompute should be one of True, False or' + ' array-like. Got %r' % self.precompute) + + # We expect X and y to be float64 or float32 Fortran ordered arrays + # when bypassing checks + if check_input: + X, y = check_X_y(X, y, accept_sparse='csc', + order='F', dtype=[np.float64, np.float32], + copy=self.copy_X and self.fit_intercept, + multi_output=True, y_numeric=True) + y = check_array(y, order='F', copy=False, dtype=X.dtype.type, + ensure_2d=False) + + X, y, X_offset, y_offset, X_scale, precompute, Xy = \ + _pre_fit(X, y, None, self.precompute, self.normalize, + self.fit_intercept, copy=False) + + + if y.ndim == 1: + y = y[:, np.newaxis] + if Xy is not None and Xy.ndim == 1: + Xy = Xy[:, np.newaxis] + + n_samples, n_features = X.shape + n_targets = y.shape[1] + + if self.selection not in ['cyclic', 'random']: + raise ValueError("selection should be either random or cyclic.") + + if not self.warm_start or self.coef_ is None: + coef_ = np.zeros((n_targets, n_features), dtype=X.dtype, + order='F') + else: + coef_ = self.coef_ + if coef_.ndim == 1: + coef_ = coef_[np.newaxis, :] + + dual_gaps_ = np.zeros(n_targets, dtype=X.dtype) + self.n_iter_ = [] + + for k in xrange(n_targets): + if Xy is not None: + this_Xy = Xy[:, k] + else: + this_Xy = None + _, this_coef, this_dual_gap, this_iter = \ + self.path(X, y[:, k], + l1_ratio=self.l1_ratio, eps=None, + n_alphas=None, alphas=[self.alpha], + precompute=precompute, Xy=this_Xy, + fit_intercept=False, normalize=False, copy_X=True, + verbose=False, tol=self.tol, positive=self.positive, + X_offset=X_offset, X_scale=X_scale, return_n_iter=True, + coef_init=coef_[k], max_iter=self.max_iter, + random_state=self.random_state, + selection=self.selection, + check_input=False) + coef_[k] = this_coef[:, 0] + dual_gaps_[k] = this_dual_gap[0] + self.n_iter_.append(this_iter[0]) + + if n_targets == 1: + self.n_iter_ = self.n_iter_[0] + + self.coef_, self.dual_gap_ = map(np.squeeze, [coef_, dual_gaps_]) + #self._set_intercept(X_offset, y_offset, X_scale) + + # workaround since _set_intercept will cast self.coef_ into float64 + self.coef_ = np.asarray(self.coef_, dtype=X.dtype) + + # return self for chaining fit and predict calls + return self diff --git a/rbow_detect.py b/rbow_detect.py index 8118a80..1d7b185 100644 --- a/rbow_detect.py +++ b/rbow_detect.py @@ -4,6 +4,8 @@ #import pandas as pd import ccd import timeit +import cProfile + def run_rbow(): specs_url = 'http://localhost' @@ -28,7 +30,13 @@ def dtstr_to_ordinal(dtstr, iso=True): return _dt.toordinal() #return datetime.strptime(dtstr, _fmt).toordinal() + # 1.8 seconds start row, col = 97, 57 + # 2.6 seconds start + row, col = 60, 5 + # 1.8 seconds in mesos + row, col = 95, 33 + #rainbow_date_array = np.array(rbow['t'].values) result = ccd.detect([dtstr_to_ordinal(i) for i in rbow['t'].values], rbow['blue'].values[:, row, col], @@ -44,9 +52,11 @@ def dtstr_to_ordinal(dtstr, iso=True): if __name__ == '__main__': - iters = 100 + iters = 1 t = timeit.Timer("run_detect(r)", setup="from __main__ import run_detect, run_rbow; r=run_rbow()") print(t.timeit(iters)/iters) + cProfile.runctx("run_detect(r)", locals={'r': run_rbow()}, globals=globals(), filename="foo.stat") + #run_rbow() diff --git a/to_svg.sh b/to_svg.sh new file mode 100755 index 0000000..08788dd --- /dev/null +++ b/to_svg.sh @@ -0,0 +1,6 @@ +#!/bin/bash + +gprof2dot -f pstats $1 > output.dot +now=`date "+%Y-%m-%d_%H:%M:%S"` +dot output.dot -T svg -o output_${now}.svg + From 1e6ad5ab06da9da281ef76e45d13a3a7e7678203 Mon Sep 17 00:00:00 2001 From: clay austin Date: Tue, 15 Aug 2017 16:35:15 -0500 Subject: [PATCH 18/45] lasso mods, add lasso cython --- ccd/models/lasso.py | 33 ++++++++------ ccd/models/lasso_c.pyx | 99 ++++++++++++++++++++++++++++++++++++++++++ setup.py | 10 +++++ 3 files changed, 128 insertions(+), 14 deletions(-) create mode 100644 ccd/models/lasso_c.pyx diff --git a/ccd/models/lasso.py b/ccd/models/lasso.py index d284819..f38452a 100644 --- a/ccd/models/lasso.py +++ b/ccd/models/lasso.py @@ -2,10 +2,8 @@ from ccd.models import FittedModel from ccd.math_utils import calc_rmse -from ccd.models.lasso_fit import ElasticNet - -def __coefficient_cache_key(observation_dates): - return tuple(observation_dates) +#from ccd.models.lasso_fit import ElasticNet +#from sklearn import linear_model def coefficient_matrix(dates, avg_days_yr, num_coefficients): @@ -21,25 +19,29 @@ def coefficient_matrix(dates, avg_days_yr, num_coefficients): Populated numpy array with coefficient values """ w = 2 * np.pi / avg_days_yr - matrix = np.zeros(shape=(len(dates), 7), order='F') + w12 = w * dates + + cos = np.cos + sin = np.sin matrix[:, 0] = dates - matrix[:, 1] = np.cos(w * dates) - matrix[:, 2] = np.sin(w * dates) + matrix[:, 1] = cos(w12) + matrix[:, 2] = sin(w12) if num_coefficients >= 6: - matrix[:, 3] = np.cos(2 * w * dates) - matrix[:, 4] = np.sin(2 * w * dates) + w34 = 2 * w12 + matrix[:, 3] = cos(w34) + matrix[:, 4] = sin(w34) if num_coefficients >= 8: - matrix[:, 5] = np.cos(3 * w * dates) - matrix[:, 6] = np.sin(3 * w * dates) + w56 = 3 * w12 + matrix[:, 5] = cos(w56) + matrix[:, 6] = sin(w56) return matrix - def fitted_model(dates, spectra_obs, max_iter, avg_days_yr, num_coefficients, lm): """Create a fully fitted lasso model. @@ -58,8 +60,11 @@ def fitted_model(dates, spectra_obs, max_iter, avg_days_yr, num_coefficients, lm fitted_model(dates, obs).predict(...) """ coef_matrix = coefficient_matrix(dates, avg_days_yr, num_coefficients) - #model = lm.fit(coef_matrix, spectra_obs) - model = ElasticNet().fit(coef_matrix, spectra_obs) + model = lm.fit(coef_matrix, spectra_obs) + #model = ElasticNet().fit(coef_matrix, spectra_obs) + #lasso = linear_model.Lasso(max_iter=max_iter) + #model = lasso.fit(coef_matrix, spectra_obs) + predictions = model.predict(coef_matrix) rmse, residuals = calc_rmse(spectra_obs, predictions) diff --git a/ccd/models/lasso_c.pyx b/ccd/models/lasso_c.pyx new file mode 100644 index 0000000..44117be --- /dev/null +++ b/ccd/models/lasso_c.pyx @@ -0,0 +1,99 @@ +from sklearn import linear_model +import numpy as np +cimport numpy as np + +from ccd.models import FittedModel +from ccd.math_utils import calc_rmse, calc_residuals + + +#ITYPE = np.int +#FTYPE = np.float +# "ctypedef" assigns a corresponding compile-time type to DTYPE_t. For +# every type in the numpy module there's a corresponding compile-time +# type with a _t-suffix. +#ctypedef np.int_t ITYPE_t +#ctypedef np.float_t FTYPE_t + +#def __coefficient_cache_key(observation_dates): +# return tuple(observation_dates) + +cdef np.ndarray coefficient_matrix(np.ndarray dates, + np.float avg_days_yr, + np.int num_coefficients): + """ + Fourier transform function to be used for the matrix of inputs for + model fitting + + Args: + dates: list of ordinal dates + num_coefficients: how many coefficients to use to build the matrix + + Returns: + Populated numpy array with coefficient values + """ + #w = 2 * np.pi / avg_days_yr + cdef float w = 2 * np.pi / avg_days_yr + + #matrix = np.zeros(shape=(len(dates), 7), order='F') + cdef int msize = 7 + cdef int dsize = len(dates) + cdef np.ndarray matrix = np.zeros(shape=(dsize, msize), dtype=np.float) + + cdef np.ndarray dcos = np.cos(w * dates) + cdef np.ndarray dsin = np.sin(w * dates) + + matrix[:, 0] = dates + matrix[:, 1] = dcos + matrix[:, 2] = dsin + + if num_coefficients >= 6: + matrix[:, 3] = np.cos(2 * w * dates) + matrix[:, 4] = np.sin(2 * w * dates) + + if num_coefficients >= 8: + matrix[:, 5] = np.cos(3 * w * dates) + matrix[:, 6] = np.sin(3 * w * dates) + + return matrix + + +cpdef fitted_model(np.ndarray dates, + np.ndarray spectra_obs, + np.int max_iter, + np.float avg_days_yr, + np.int num_coefficients): + + + """Create a fully fitted lasso model. + + Args: + dates: list or ordinal observation dates + spectra_obs: list of values corresponding to the observation dates for + a single spectral band + num_coefficients: how many coefficients to use for the fit + max_iter: maximum number of iterations that the coefficients + undergo to find the convergence point. + + Returns: + sklearn.linear_model.Lasso().fit(observation_dates, observations) + + Example: + fitted_model(dates, obs).predict(...) + """ + # change + + cdef np.ndarray coef_matrix = coefficient_matrix(dates, avg_days_yr, num_coefficients) + + lasso = linear_model.Lasso(max_iter=max_iter) + model = lasso.fit(coef_matrix, spectra_obs) + + predictions = model.predict(coef_matrix) + cdef np.ndarray[np.float_t, ndim=1] residuals = calc_residuals(spectra_obs, predictions) + cdef np.float_t rmse = calc_rmse(residuals) + + return FittedModel(fitted_model=model, rmse=rmse, residual=residuals) + +cpdef predict(model, dates, avg_days_yr): + coef_matrix = coefficient_matrix(dates, avg_days_yr, 8) + + return model.fitted_model.predict(coef_matrix) diff --git a/setup.py b/setup.py index e120a36..f55b1a3 100644 --- a/setup.py +++ b/setup.py @@ -11,10 +11,17 @@ from setuptools import setup from os import path + +from Cython.Build import cythonize +from distutils.extension import Extension +import numpy as np + import io here = path.abspath(path.dirname(__file__)) +extensions = [Extension('models', ['ccd/models/*.pyx'], include_dirs=[np.get_include()])] + # bring in __version__ and __name from version.py for install. with open(path.join(here, 'ccd', 'version.py')) as h: @@ -60,6 +67,9 @@ packages=['ccd', 'ccd.models'], + ext_modules=cythonize(['ccd/models/*.pyx']), + include_dirs=[np.get_include()], + install_requires=['numpy>=1.10.0', 'scipy>=0.18.1', 'scikit-learn>=0.18', From fdd51430f60b3995f7e76b1fae226c9439c19e74 Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 16 Aug 2017 08:48:59 -0500 Subject: [PATCH 19/45] more precise Lasso import, half % less time spent in fitted_model --- ccd/procedures.py | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/ccd/procedures.py b/ccd/procedures.py index 462cc0b..7fb4599 100644 --- a/ccd/procedures.py +++ b/ccd/procedures.py @@ -34,9 +34,7 @@ from ccd.models import results_to_changemodel, tmask from ccd.math_utils import kelvin_to_celsius, adjusted_variogram, euclidean_norm -#testing -from sklearn import linear_model -lm_lasso = linear_model.Lasso +from sklearn.linear_model import Lasso log = logging.getLogger(__name__) @@ -242,7 +240,7 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): curve_qa = proc_params.CURVE_QA detection_bands = proc_params.DETECTION_BANDS - lasso = lm_lasso(max_iter=proc_params.LASSO_MAX_ITER) + lasso = Lasso(max_iter=proc_params.LASSO_MAX_ITER) ldebug('Build change models - dates: %s, obs: %s, ' 'meow_size: %s, peek_size: %s', From 2a2c946cc52eebc83d6147a37d82894fe1a2be49 Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 16 Aug 2017 16:03:36 -0500 Subject: [PATCH 20/45] WIP tmask optimizations and cython --- ccd/functions.py | 22 --- ccd/models/functions.pyx | 67 +++++++++ ccd/models/{robust_fit.py => robust_fit.pyx} | 138 ++++++++++--------- ccd/models/tmask.py | 17 ++- ccd/procedures.py | 5 +- 5 files changed, 156 insertions(+), 93 deletions(-) delete mode 100644 ccd/functions.py create mode 100644 ccd/models/functions.pyx rename ccd/models/{robust_fit.py => robust_fit.pyx} (69%) diff --git a/ccd/functions.py b/ccd/functions.py deleted file mode 100644 index b734281..0000000 --- a/ccd/functions.py +++ /dev/null @@ -1,22 +0,0 @@ -def extention_window_ix(): - pass - - -def window_start_ix(): - pass - - -def window_end_ix(): - pass - - -def window(start_ix, stop_ix): - pass - - -def extension_window(start_ix, stop_ix): - pass - - -def has_extension_window(window): - pass diff --git a/ccd/models/functions.pyx b/ccd/models/functions.pyx new file mode 100644 index 0000000..b0ba5a5 --- /dev/null +++ b/ccd/models/functions.pyx @@ -0,0 +1,67 @@ +import numpy as np +cimport numpy as np + +from cpython cimport bool + +ctypedef np.float64_t ITYPE_t +ctypedef float FTYPE_t +ctypedef np.complex_t CTYPE_t + +cpdef np.ndarray[ITYPE_t, ndim=1] bisquare(np.ndarray[ITYPE_t, ndim=1] resid, FTYPE_t c=4.685): + """ + Returns weighting for each residual using bisquare weight function + + Args: + resid (np.ndarray): residuals to be weighted + c (float): tuning constant for Tukey's Biweight (default: 4.685) + + Returns: + weight (ndarray): weights for residuals + + Reference: + http://statsmodels.sourceforge.net/stable/generated/statsmodels.robust.norms.TukeyBiweight.html + """ + # Weight where abs(resid) < c; otherwise 0 + cdef np.ndarray[ITYPE_t, ndim=1] abs_resid = np.abs(resid) + return (abs_resid < c) * (1 - (resid / c) ** 2) ** 2 + +cpdef ITYPE_t mad(np.ndarray[ITYPE_t, ndim=1] x, ITYPE_t c=0.6745): + """ + Returns Median-Absolute-Deviation (MAD) of some data + + Args: + resid (np.ndarray): Observations (e.g., residuals) + c (float): scale factor to get to ~standard normal (default: 0.6745) + (i.e. 1 / 0.75iCDF ~= 1.4826 = 1 / 0.6745) + + Returns: + float: MAD 'robust' standard deivation estimate + + Reference: + http://en.wikipedia.org/wiki/Median_absolute_deviation + """ + # Return median absolute deviation adjusted sigma + rs = np.sort(np.abs(x)) + return np.median(rs[4:]) / c + +cpdef bool _check_converge(np.ndarray[ITYPE_t, ndim=1] x0, np.ndarray[ITYPE_t, ndim=1] x, ITYPE_t tol=1e-8): + return not np.any(np.fabs(x0 - x > tol)) + +cpdef np.ndarray[ITYPE_t, ndim=1] _weight_beta(np.ndarray[ITYPE_t, ndim=2] X, + np.ndarray[ITYPE_t, ndim=1] y, + np.ndarray[ITYPE_t, ndim=1] w): + + cdef np.ndarray[ITYPE_t, ndim=1] sw = np.sqrt(w) + + cdef np.ndarray[ITYPE_t, ndim=2] Xw = X * sw[:, None] + cdef np.ndarray[ITYPE_t, ndim=1] yw = y * sw + + return np.linalg.lstsq(Xw, yw)[0] + +cpdef np.ndarray[ITYPE_t, ndim=1] _weight_resid(np.ndarray[ITYPE_t, ndim=2] X, + np.ndarray[ITYPE_t, ndim=1] y, + np.ndarray[ITYPE_t, ndim=1] beta): + return y - np.dot(X, beta) + + + diff --git a/ccd/models/robust_fit.py b/ccd/models/robust_fit.pyx similarity index 69% rename from ccd/models/robust_fit.py rename to ccd/models/robust_fit.pyx index 6e26aea..73a482d 100644 --- a/ccd/models/robust_fit.py +++ b/ccd/models/robust_fit.pyx @@ -15,86 +15,93 @@ # Don't alias to ``np`` until fix is implemented # https://github.com/numba/numba/issues/1559 import numpy + +import sklearn import scipy +from functions import bisquare, mad, _check_converge, _weight_beta, _weight_resid # from yatsm.accel import try_jit +EPS = numpy.finfo('float').eps -# Weight scaling methods -# @try_jit(nopython=True) -def bisquare(resid, c=4.685): - """ - Returns weighting for each residual using bisquare weight function - - Args: - resid (np.ndarray): residuals to be weighted - c (float): tuning constant for Tukey's Biweight (default: 4.685) - - Returns: - weight (ndarray): weights for residuals - Reference: - http://statsmodels.sourceforge.net/stable/generated/statsmodels.robust.norms.TukeyBiweight.html - """ - # Weight where abs(resid) < c; otherwise 0 - return (numpy.abs(resid) < c) * (1 - (resid / c) ** 2) ** 2 +# Weight scaling methods # @try_jit(nopython=True) -def mad(x, c=0.6745): - """ - Returns Median-Absolute-Deviation (MAD) of some data - - Args: - resid (np.ndarray): Observations (e.g., residuals) - c (float): scale factor to get to ~standard normal (default: 0.6745) - (i.e. 1 / 0.75iCDF ~= 1.4826 = 1 / 0.6745) - - Returns: - float: MAD 'robust' standard deivation estimate - - Reference: - http://en.wikipedia.org/wiki/Median_absolute_deviation - """ - # Return median absolute deviation adjusted sigma - rs = numpy.sort(numpy.abs(x)) - return numpy.median(rs[4:]) / c +#def bisquare(resid, c=4.685): +# """ +# Returns weighting for each residual using bisquare weight function +# +# Args: +# resid (np.ndarray): residuals to be weighted +# c (float): tuning constant for Tukey's Biweight (default: 4.685) +# +# Returns: +# weight (ndarray): weights for residuals +# +# Reference: +# http://statsmodels.sourceforge.net/stable/generated/statsmodels.robust.norms.TukeyBiweight.html +# """ +# # Weight where abs(resid) < c; otherwise 0 +# return (numpy.abs(resid) < c) * (1 - (resid / c) ** 2) ** 2 + + +## @try_jit(nopython=True) +#def mad(x, c=0.6745): +# """ +# Returns Median-Absolute-Deviation (MAD) of some data +# +# Args: +# resid (np.ndarray): Observations (e.g., residuals) +# c (float): scale factor to get to ~standard normal (default: 0.6745) +# (i.e. 1 / 0.75iCDF ~= 1.4826 = 1 / 0.6745) +# +# Returns: +# float: MAD 'robust' standard deivation estimate +# +# Reference: +# http://en.wikipedia.org/wiki/Median_absolute_deviation +# """ +# # Return median absolute deviation adjusted sigma +# rs = numpy.sort(numpy.abs(x)) +# return numpy.median(rs[4:]) / c # return numpy.median(numpy.fabs(x)) / c # UTILITY FUNCTIONS # @try_jit(nopython=True) -def _check_converge(x0, x, tol=1e-8): - return not numpy.any(numpy.fabs(x0 - x > tol)) +#def _check_converge(x0, x, tol=1e-8): +# return not numpy.any(numpy.fabs(x0 - x > tol)) # Broadcast on sw prevents nopython # TODO: check implementation https://github.com/numba/numba/pull/1542 # @try_jit() -def _weight_fit(X, y, w): - """ - Apply a weighted OLS fit to data - - Args: - X (ndarray): independent variables - y (ndarray): dependent variable - w (ndarray): observation weights - - Returns: - tuple: coefficients and residual vector - - """ - sw = numpy.sqrt(w) - - Xw = X * sw[:, None] - yw = y * sw - - beta, _, _, _ = numpy.linalg.lstsq(Xw, yw) - - resid = y - numpy.dot(X, beta) - - return beta, resid +#def _weight_fit(X, y, w): +# """ +# Apply a weighted OLS fit to data +# +# Args: +# X (ndarray): independent variables +# y (ndarray): dependent variable +# w (ndarray): observation weights +# +# Returns: +# tuple: coefficients and residual vector +# +# """ +# sw = numpy.sqrt(w) +# +# Xw = X * sw[:, None] +# yw = y * sw +# +# beta, _, _, _ = numpy.linalg.lstsq(Xw, yw) +# +# resid = y - numpy.dot(X, beta) +# +# return beta, resid # Robust regression @@ -155,11 +162,13 @@ def fit(self, X, y): chaining """ - EPS = numpy.finfo('float').eps + #self.coef_, resid = _weight_fit(X, y, numpy.ones_like(y)) + self.coef_ = _weight_beta(X, y, numpy.ones_like(y)) + resid = _weight_resid(X, y, self.coef_) - self.coef_, resid = _weight_fit(X, y, numpy.ones_like(y)) self.scale = self.scale_est(resid, c=self.scale_constant) + Q, R = scipy.linalg.qr(X) E = X.dot(numpy.linalg.inv(R[0:X.shape[1],0:X.shape[1]])) const_h= numpy.ones(X.shape[0])*0.9999 @@ -189,7 +198,10 @@ def fit(self, X, y): # print iteration,numpy.sort(numpy.abs(resid)/self.scale_constant) self.weights = self.M(resid / self.scale, c=self.tune) - self.coef_, resid = _weight_fit(X, y, self.weights) + #self.coef_, resid = _weight_fit(X, y, self.weights) + self.coef_ = _weight_beta(X, y, self.weights) + resid = _weight_resid(X, y, self.coef_) + # print 'w: ', self.weights iteration += 1 diff --git a/ccd/models/tmask.py b/ccd/models/tmask.py index e0fbb46..cdce618 100644 --- a/ccd/models/tmask.py +++ b/ccd/models/tmask.py @@ -25,17 +25,19 @@ def tmask_coefficient_matrix(dates, avg_days_yr): """ annual_cycle = 2*np_pi/avg_days_yr observation_cycle = annual_cycle / np.ceil((dates[-1] - dates[0]) / avg_days_yr) + ac_dates = annual_cycle * dates + oc_dates = observation_cycle * dates matrix = np_ones(shape=(dates.shape[0], 5), order='F') - matrix[:, 0] = np_cos(annual_cycle * dates) - matrix[:, 1] = np_sin(annual_cycle * dates) - matrix[:, 2] = np_cos(observation_cycle * dates) - matrix[:, 3] = np_sin(observation_cycle * dates) + matrix[:, 0] = np_cos(ac_dates) + matrix[:, 1] = np_sin(ac_dates) + matrix[:, 2] = np_cos(oc_dates) + matrix[:, 3] = np_sin(oc_dates) return matrix -def tmask(dates, observations, variogram, bands, t_const, avg_days_yr): +def tmask(dates, observations, variogram, bands, t_const, avg_days_yr, regression): """Produce an index for filtering outliers. Arguments: @@ -53,7 +55,7 @@ def tmask(dates, observations, variogram, bands, t_const, avg_days_yr): # variogram = calculate_variogram(observations) # Time and expected values using a four-part matrix of coefficients. # regression = lm.LinearRegression() - regression = robust_fit.RLM(maxiter=5) + #regression = robust_fit.RLM(maxiter=5) tmask_matrix = tmask_coefficient_matrix(dates, avg_days_yr) @@ -64,7 +66,8 @@ def tmask(dates, observations, variogram, bands, t_const, avg_days_yr): # For each band, determine if the delta between predicted and actual # values exceeds the threshold. If it does, then it is an outlier. - regression_fit = regression.fit + #regression_fit = regression.fit + regression_fit = regression for band_ix in bands: fit = regression_fit(tmask_matrix, observations[band_ix]) predicted = fit.predict(tmask_matrix) diff --git a/ccd/procedures.py b/ccd/procedures.py index 7fb4599..04f7491 100644 --- a/ccd/procedures.py +++ b/ccd/procedures.py @@ -35,6 +35,9 @@ from ccd.math_utils import kelvin_to_celsius, adjusted_variogram, euclidean_norm from sklearn.linear_model import Lasso +from ccd.models import robust_fit + +robust_fit_regression = robust_fit.RLM(maxiter=5).fit log = logging.getLogger(__name__) @@ -412,7 +415,7 @@ def initialize(dates, observations, fitter_fn, model_window, processing_mask, tmask_outliers = tmask_tmask(period[model_window], spectral_obs[:, model_window], variogram, tmask_bands, tmask_scale, - avg_days_yr) + avg_days_yr, robust_fit_regression) tmask_count = np_sum(tmask_outliers) From 113f31fbc8ad46b38de5cf667b0feb8f74c66cd1 Mon Sep 17 00:00:00 2001 From: clay austin Date: Thu, 17 Aug 2017 13:52:21 -0500 Subject: [PATCH 21/45] cythonization of the tmask pipeline --- ccd/models/functions.pyx | 67 -------- ccd/models/robust_fit.pyx | 221 +++++++++++++++----------- ccd/models/{tmask.py => tmask.pyx} | 46 ++++-- ccd/{procedures.py => procedures.pyx} | 1 + setup.py | 2 +- 5 files changed, 161 insertions(+), 176 deletions(-) delete mode 100644 ccd/models/functions.pyx rename ccd/models/{tmask.py => tmask.pyx} (58%) rename ccd/{procedures.py => procedures.pyx} (99%) diff --git a/ccd/models/functions.pyx b/ccd/models/functions.pyx deleted file mode 100644 index b0ba5a5..0000000 --- a/ccd/models/functions.pyx +++ /dev/null @@ -1,67 +0,0 @@ -import numpy as np -cimport numpy as np - -from cpython cimport bool - -ctypedef np.float64_t ITYPE_t -ctypedef float FTYPE_t -ctypedef np.complex_t CTYPE_t - -cpdef np.ndarray[ITYPE_t, ndim=1] bisquare(np.ndarray[ITYPE_t, ndim=1] resid, FTYPE_t c=4.685): - """ - Returns weighting for each residual using bisquare weight function - - Args: - resid (np.ndarray): residuals to be weighted - c (float): tuning constant for Tukey's Biweight (default: 4.685) - - Returns: - weight (ndarray): weights for residuals - - Reference: - http://statsmodels.sourceforge.net/stable/generated/statsmodels.robust.norms.TukeyBiweight.html - """ - # Weight where abs(resid) < c; otherwise 0 - cdef np.ndarray[ITYPE_t, ndim=1] abs_resid = np.abs(resid) - return (abs_resid < c) * (1 - (resid / c) ** 2) ** 2 - -cpdef ITYPE_t mad(np.ndarray[ITYPE_t, ndim=1] x, ITYPE_t c=0.6745): - """ - Returns Median-Absolute-Deviation (MAD) of some data - - Args: - resid (np.ndarray): Observations (e.g., residuals) - c (float): scale factor to get to ~standard normal (default: 0.6745) - (i.e. 1 / 0.75iCDF ~= 1.4826 = 1 / 0.6745) - - Returns: - float: MAD 'robust' standard deivation estimate - - Reference: - http://en.wikipedia.org/wiki/Median_absolute_deviation - """ - # Return median absolute deviation adjusted sigma - rs = np.sort(np.abs(x)) - return np.median(rs[4:]) / c - -cpdef bool _check_converge(np.ndarray[ITYPE_t, ndim=1] x0, np.ndarray[ITYPE_t, ndim=1] x, ITYPE_t tol=1e-8): - return not np.any(np.fabs(x0 - x > tol)) - -cpdef np.ndarray[ITYPE_t, ndim=1] _weight_beta(np.ndarray[ITYPE_t, ndim=2] X, - np.ndarray[ITYPE_t, ndim=1] y, - np.ndarray[ITYPE_t, ndim=1] w): - - cdef np.ndarray[ITYPE_t, ndim=1] sw = np.sqrt(w) - - cdef np.ndarray[ITYPE_t, ndim=2] Xw = X * sw[:, None] - cdef np.ndarray[ITYPE_t, ndim=1] yw = y * sw - - return np.linalg.lstsq(Xw, yw)[0] - -cpdef np.ndarray[ITYPE_t, ndim=1] _weight_resid(np.ndarray[ITYPE_t, ndim=2] X, - np.ndarray[ITYPE_t, ndim=1] y, - np.ndarray[ITYPE_t, ndim=1] beta): - return y - np.dot(X, beta) - - - diff --git a/ccd/models/robust_fit.pyx b/ccd/models/robust_fit.pyx index 73a482d..04eb7fc 100644 --- a/ccd/models/robust_fit.pyx +++ b/ccd/models/robust_fit.pyx @@ -1,3 +1,4 @@ +# cython: profile=True """ Perform an iteratively re-weighted least squares 'robust regression'. Basically a clone of `statsmodels.robust.robust_linear_model.RLM` without all the lovely, @@ -15,97 +16,114 @@ statsmodels and can reach ~4x faster if Numba is available to accelerate. # Don't alias to ``np`` until fix is implemented # https://github.com/numba/numba/issues/1559 import numpy +cimport numpy + +from cpython cimport bool + +ctypedef numpy.float64_t STYPE_t +ctypedef float FTYPE_t +ctypedef int ITYPE_t +ctypedef bool BTYPE_t import sklearn import scipy -from functions import bisquare, mad, _check_converge, _weight_beta, _weight_resid - -# from yatsm.accel import try_jit EPS = numpy.finfo('float').eps +cdef numpy.ndarray[STYPE_t, ndim=1] bisquare(numpy.ndarray[STYPE_t, ndim=1] resid, + FTYPE_t c=4.685): + """ + Returns weighting for each residual using bisquare weight function + + Args: + resid (np.ndarray): residuals to be weighted + c (float): tuning constant for Tukey's Biweight (default: 4.685) + + Returns: + weight (ndarray): weights for residuals + + Reference: + http://statsmodels.sourceforge.net/stable/generated/statsmodels.robust.norms.TukeyBiweight.html + """ + # Weight where abs(resid) < c; otherwise 0 + cdef numpy.ndarray[STYPE_t, ndim=1] abs_resid = numpy.abs(resid) + + return (abs_resid < c) * (1 - (resid / c) ** 2) ** 2 + + +cdef STYPE_t mad(numpy.ndarray[STYPE_t, ndim=1] x, + STYPE_t c=0.6745): + """ + Returns Median-Absolute-Deviation (MAD) of some data + + Args: + resid (np.ndarray): Observations (e.g., residuals) + c (float): scale factor to get to ~standard normal (default: 0.6745) + (i.e. 1 / 0.75iCDF ~= 1.4826 = 1 / 0.6745) + + Returns: + float: MAD 'robust' standard deivation estimate + + Reference: + http://en.wikipedia.org/wiki/Median_absolute_deviation + """ + # Return median absolute deviation adjusted sigma + rs = numpy.sort(numpy.abs(x)) + + return numpy.median(rs[4:]) / c + + +cdef bool _check_converge(numpy.ndarray[STYPE_t, ndim=1] x0, + numpy.ndarray[STYPE_t, ndim=1] x, + STYPE_t tol=1e-8): + + return not numpy.any(numpy.fabs(x0 - x > tol)) + + +cdef numpy.ndarray[STYPE_t, ndim=1] _weight_beta(numpy.ndarray[STYPE_t, ndim=2] X, + numpy.ndarray[STYPE_t, ndim=1] y, + numpy.ndarray[STYPE_t, ndim=1] w): + """ + Apply a weighted OLS fit to data + + Args: + X (ndarray): independent variables + y (ndarray): dependent variable + w (ndarray): observation weights + + Returns: + array: coefficients + """ -# Weight scaling methods -# @try_jit(nopython=True) -#def bisquare(resid, c=4.685): -# """ -# Returns weighting for each residual using bisquare weight function -# -# Args: -# resid (np.ndarray): residuals to be weighted -# c (float): tuning constant for Tukey's Biweight (default: 4.685) -# -# Returns: -# weight (ndarray): weights for residuals -# -# Reference: -# http://statsmodels.sourceforge.net/stable/generated/statsmodels.robust.norms.TukeyBiweight.html -# """ -# # Weight where abs(resid) < c; otherwise 0 -# return (numpy.abs(resid) < c) * (1 - (resid / c) ** 2) ** 2 - - -## @try_jit(nopython=True) -#def mad(x, c=0.6745): -# """ -# Returns Median-Absolute-Deviation (MAD) of some data -# -# Args: -# resid (np.ndarray): Observations (e.g., residuals) -# c (float): scale factor to get to ~standard normal (default: 0.6745) -# (i.e. 1 / 0.75iCDF ~= 1.4826 = 1 / 0.6745) -# -# Returns: -# float: MAD 'robust' standard deivation estimate -# -# Reference: -# http://en.wikipedia.org/wiki/Median_absolute_deviation -# """ -# # Return median absolute deviation adjusted sigma -# rs = numpy.sort(numpy.abs(x)) -# return numpy.median(rs[4:]) / c - -# return numpy.median(numpy.fabs(x)) / c - - -# UTILITY FUNCTIONS -# @try_jit(nopython=True) -#def _check_converge(x0, x, tol=1e-8): -# return not numpy.any(numpy.fabs(x0 - x > tol)) - - -# Broadcast on sw prevents nopython -# TODO: check implementation https://github.com/numba/numba/pull/1542 -# @try_jit() -#def _weight_fit(X, y, w): -# """ -# Apply a weighted OLS fit to data -# -# Args: -# X (ndarray): independent variables -# y (ndarray): dependent variable -# w (ndarray): observation weights -# -# Returns: -# tuple: coefficients and residual vector -# -# """ -# sw = numpy.sqrt(w) -# -# Xw = X * sw[:, None] -# yw = y * sw -# -# beta, _, _, _ = numpy.linalg.lstsq(Xw, yw) -# -# resid = y - numpy.dot(X, beta) -# -# return beta, resid + cdef numpy.ndarray[STYPE_t, ndim=1] sw = numpy.sqrt(w) + cdef numpy.ndarray[STYPE_t, ndim=2] Xw = X * sw[:, None] + cdef numpy.ndarray[STYPE_t, ndim=1] yw = y * sw + + return numpy.linalg.lstsq(Xw, yw)[0] + +cdef numpy.ndarray[STYPE_t, ndim=1] _weight_resid(numpy.ndarray[STYPE_t, ndim=2] X, + numpy.ndarray[STYPE_t, ndim=1] y, + numpy.ndarray[STYPE_t, ndim=1] beta): + """ + Apply a weighted OLS fit to data + + Args: + X (ndarray): independent variables + y (ndarray): dependent variable + w (ndarray): observation weights + + Returns: + array: residual vector + + """ + return y - numpy.dot(X, beta) # Robust regression -class RLM(object): +#class RLM(object): +cdef class RLM: """ Robust Linear Model using Iterative Reweighted Least Squares (RIRLS) Perform robust fitting regression via iteratively reweighted least squares @@ -135,13 +153,21 @@ class RLM(object): robust iteratively reweighted least squares """ - - def __init__(self, M=bisquare, tune=4.685, - scale_est=mad, scale_constant=0.6745, + #cdef public: + # tune, scale_constant, update_scale, maxiter, tol, coef_, intercept_, scale, weights + cdef public FTYPE_t tune + cdef public FTYPE_t scale_constant + cdef public BTYPE_t update_scale + cdef public ITYPE_t maxiter + cdef public STYPE_t tol + cdef public numpy.ndarray coef_ + cdef public STYPE_t intercept_ + cdef public STYPE_t scale + cdef public numpy.ndarray weights + + def __init__(self, tune=4.685, scale_constant=0.6745, update_scale=True, maxiter=50, tol=1e-8): - self.M = M self.tune = tune - self.scale_est = scale_est self.scale_constant = scale_constant self.update_scale = update_scale self.maxiter = maxiter @@ -150,7 +176,9 @@ class RLM(object): self.coef_ = None self.intercept_ = 0.0 - def fit(self, X, y): + cpdef fit(self, + numpy.ndarray[STYPE_t, ndim=2] X, + numpy.ndarray[STYPE_t, ndim=1] y): """ Fit a model predicting y from X design matrix Args: @@ -164,9 +192,11 @@ class RLM(object): """ #self.coef_, resid = _weight_fit(X, y, numpy.ones_like(y)) self.coef_ = _weight_beta(X, y, numpy.ones_like(y)) + #cdef numpy.ndarray[STYPE_t, ndim=1] resid = _weight_resid(X, y, self.coef_) resid = _weight_resid(X, y, self.coef_) - self.scale = self.scale_est(resid, c=self.scale_constant) + + self.scale = mad(resid, c=self.scale_constant) Q, R = scipy.linalg.qr(X) @@ -183,21 +213,23 @@ class RLM(object): if self.scale < EPS: return self - iteration = 1 - converged = 0 + cdef ITYPE_t iteration = 1 + cdef ITYPE_t converged = 0 while not converged and iteration < self.maxiter: _coef = self.coef_.copy() resid = y-X.dot(_coef) resid = resid * adjfactor # print resid - if self.update_scale: - self.scale = max(EPS*numpy.std(y), - self.scale_est(resid, c=self.scale_constant)) + # always True + #if self.update_scale: + self.scale = max(EPS*numpy.std(y), + mad(resid, c=self.scale_constant)) # print self.scale # print iteration,numpy.sort(numpy.abs(resid)/self.scale_constant) - self.weights = self.M(resid / self.scale, c=self.tune) + #self.weights = self.M(resid / self.scale, c=self.tune) + self.weights = bisquare(resid / self.scale, c=self.tune) #self.coef_, resid = _weight_fit(X, y, self.weights) self.coef_ = _weight_beta(X, y, self.weights) resid = _weight_resid(X, y, self.coef_) @@ -209,15 +241,14 @@ class RLM(object): # print resid return self - def predict(self, X): + cpdef numpy.ndarray[STYPE_t, ndim=1] predict(self, + numpy.ndarray[STYPE_t, ndim=2] X): """ Predict yhat using model - Args: X (np.ndarray): 2D (n_obs x n_features) design matrix Returns: np.ndarray: 1D yhat prediction - """ return numpy.dot(X[:,1:], self.coef_[1:]) + X[:,0]*self.coef_[0] # return numpy.dot(X, self.coef_) + self.intercept_ diff --git a/ccd/models/tmask.py b/ccd/models/tmask.pyx similarity index 58% rename from ccd/models/tmask.py rename to ccd/models/tmask.pyx index cdce618..9e26250 100644 --- a/ccd/models/tmask.py +++ b/ccd/models/tmask.pyx @@ -1,7 +1,17 @@ +# cython: profile=True import logging import numpy as np +cimport numpy as np -from ccd.models import robust_fit +from cpython cimport bool + +ctypedef np.float64_t STYPE_t +ctypedef float FTYPE_t +ctypedef int ITYPE_t +ctypedef bool BTYPE_t +ctypedef np.long_t LTYPE_t + +#from ccd.models import robust_fit log = logging.getLogger(__name__) @@ -14,7 +24,9 @@ np_zeros = np.zeros np_abs = np.abs -def tmask_coefficient_matrix(dates, avg_days_yr): + +cpdef np.ndarray tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, + FTYPE_t avg_days_yr): """Coefficient matrix that is used for Tmask modeling Args: @@ -23,21 +35,28 @@ def tmask_coefficient_matrix(dates, avg_days_yr): Returns: Populated numpy array with coefficient values """ - annual_cycle = 2*np_pi/avg_days_yr - observation_cycle = annual_cycle / np.ceil((dates[-1] - dates[0]) / avg_days_yr) + cdef FTYPE_t annual_cycle = 2*np_pi/avg_days_yr + cdef STYPE_t observation_cycle = annual_cycle / np.ceil((dates[-1] - dates[0]) / avg_days_yr) + ac_dates = annual_cycle * dates oc_dates = observation_cycle * dates - matrix = np_ones(shape=(dates.shape[0], 5), order='F') + cdef np.ndarray[STYPE_t, ndim=2] matrix = np_ones(shape=(dates.shape[0], 5), order='F') matrix[:, 0] = np_cos(ac_dates) matrix[:, 1] = np_sin(ac_dates) matrix[:, 2] = np_cos(oc_dates) matrix[:, 3] = np_sin(oc_dates) - + #print("** matrix: {} {}".format(matrix.ndim, matrix.dtype)) return matrix -def tmask(dates, observations, variogram, bands, t_const, avg_days_yr, regression): +cpdef tmask(np.ndarray[LTYPE_t, ndim=1] dates, + np.ndarray[STYPE_t, ndim=2] observations, + np.ndarray[STYPE_t, ndim=1] variogram, + list bands, + FTYPE_t t_const, + FTYPE_t avg_days_yr, + object regression_fit): """Produce an index for filtering outliers. Arguments: @@ -56,18 +75,19 @@ def tmask(dates, observations, variogram, bands, t_const, avg_days_yr, regressio # Time and expected values using a four-part matrix of coefficients. # regression = lm.LinearRegression() #regression = robust_fit.RLM(maxiter=5) - - tmask_matrix = tmask_coefficient_matrix(dates, avg_days_yr) - + cdef np.ndarray[STYPE_t, ndim=2] tmask_matrix = tmask_coefficient_matrix(dates, avg_days_yr) + #print("tmask_matrix {} {} {}".format(type(tmask_matrix), tmask_matrix.ndim, tmask_matrix.dtype)) # Accumulator for outliers. This starts off as a list of False values # because we don't assume anything is an outlier. - _, sample_count = observations.shape - outliers = np_zeros(sample_count, dtype=bool) + #_, sample_count = observations.shape[0] + cdef ITYPE_t sample_count = observations.shape[1] + #print("sample_count {} ".format(type(sample_count))) + cdef np.ndarray outliers = np_zeros(sample_count, dtype=bool) + #print("outliers {} {} {}".format(type(outliers), outliers.ndim, outliers.dtype)) # For each band, determine if the delta between predicted and actual # values exceeds the threshold. If it does, then it is an outlier. #regression_fit = regression.fit - regression_fit = regression for band_ix in bands: fit = regression_fit(tmask_matrix, observations[band_ix]) predicted = fit.predict(tmask_matrix) diff --git a/ccd/procedures.py b/ccd/procedures.pyx similarity index 99% rename from ccd/procedures.py rename to ccd/procedures.pyx index 04f7491..ca078e1 100644 --- a/ccd/procedures.py +++ b/ccd/procedures.pyx @@ -1,3 +1,4 @@ +# cython: profile=True """Functions for providing the over-arching methodology. Tying together the individual components that make-up the change detection process. This module should really contain any method that could be considered procedural. Methods diff --git a/setup.py b/setup.py index f55b1a3..ce1331d 100644 --- a/setup.py +++ b/setup.py @@ -67,7 +67,7 @@ packages=['ccd', 'ccd.models'], - ext_modules=cythonize(['ccd/models/*.pyx']), + ext_modules=cythonize(['ccd/models/*.pyx', 'ccd/procedures.pyx']), include_dirs=[np.get_include()], install_requires=['numpy>=1.10.0', From bb624ec7f991d84b1a4438c9bbf2637028964118 Mon Sep 17 00:00:00 2001 From: clay austin Date: Mon, 21 Aug 2017 18:12:49 -0500 Subject: [PATCH 22/45] update gitignore, cleanup lasso extraction attempt --- .gitignore | 6 +++ ccd/models/lasso_c.pyx | 99 ------------------------------------------ 2 files changed, 6 insertions(+), 99 deletions(-) delete mode 100644 ccd/models/lasso_c.pyx diff --git a/.gitignore b/.gitignore index 5d5dfdc..714a014 100644 --- a/.gitignore +++ b/.gitignore @@ -9,3 +9,9 @@ pip-selfcheck.json *.venv/* *.ipynb_checkpoints .idea/ +*.svg +*.stat +*.dot +*.so +*.c + diff --git a/ccd/models/lasso_c.pyx b/ccd/models/lasso_c.pyx deleted file mode 100644 index 44117be..0000000 --- a/ccd/models/lasso_c.pyx +++ /dev/null @@ -1,99 +0,0 @@ -from sklearn import linear_model -import numpy as np -cimport numpy as np - -from ccd.models import FittedModel -from ccd.math_utils import calc_rmse, calc_residuals - - -#ITYPE = np.int -#FTYPE = np.float -# "ctypedef" assigns a corresponding compile-time type to DTYPE_t. For -# every type in the numpy module there's a corresponding compile-time -# type with a _t-suffix. -#ctypedef np.int_t ITYPE_t -#ctypedef np.float_t FTYPE_t - -#def __coefficient_cache_key(observation_dates): -# return tuple(observation_dates) - -cdef np.ndarray coefficient_matrix(np.ndarray dates, - np.float avg_days_yr, - np.int num_coefficients): - """ - Fourier transform function to be used for the matrix of inputs for - model fitting - - Args: - dates: list of ordinal dates - num_coefficients: how many coefficients to use to build the matrix - - Returns: - Populated numpy array with coefficient values - """ - #w = 2 * np.pi / avg_days_yr - cdef float w = 2 * np.pi / avg_days_yr - - #matrix = np.zeros(shape=(len(dates), 7), order='F') - cdef int msize = 7 - cdef int dsize = len(dates) - cdef np.ndarray matrix = np.zeros(shape=(dsize, msize), dtype=np.float) - - cdef np.ndarray dcos = np.cos(w * dates) - cdef np.ndarray dsin = np.sin(w * dates) - - matrix[:, 0] = dates - matrix[:, 1] = dcos - matrix[:, 2] = dsin - - if num_coefficients >= 6: - matrix[:, 3] = np.cos(2 * w * dates) - matrix[:, 4] = np.sin(2 * w * dates) - - if num_coefficients >= 8: - matrix[:, 5] = np.cos(3 * w * dates) - matrix[:, 6] = np.sin(3 * w * dates) - - return matrix - - -cpdef fitted_model(np.ndarray dates, - np.ndarray spectra_obs, - np.int max_iter, - np.float avg_days_yr, - np.int num_coefficients): - - - """Create a fully fitted lasso model. - - Args: - dates: list or ordinal observation dates - spectra_obs: list of values corresponding to the observation dates for - a single spectral band - num_coefficients: how many coefficients to use for the fit - max_iter: maximum number of iterations that the coefficients - undergo to find the convergence point. - - Returns: - sklearn.linear_model.Lasso().fit(observation_dates, observations) - - Example: - fitted_model(dates, obs).predict(...) - """ - # change - - cdef np.ndarray coef_matrix = coefficient_matrix(dates, avg_days_yr, num_coefficients) - - lasso = linear_model.Lasso(max_iter=max_iter) - model = lasso.fit(coef_matrix, spectra_obs) - - predictions = model.predict(coef_matrix) - cdef np.ndarray[np.float_t, ndim=1] residuals = calc_residuals(spectra_obs, predictions) - cdef np.float_t rmse = calc_rmse(residuals) - - return FittedModel(fitted_model=model, rmse=rmse, residual=residuals) - -cpdef predict(model, dates, avg_days_yr): - coef_matrix = coefficient_matrix(dates, avg_days_yr, 8) - - return model.fitted_model.predict(coef_matrix) From 970cabe26f6d63e1707abac8ca7c2ecdd8219ae6 Mon Sep 17 00:00:00 2001 From: clay austin Date: Mon, 21 Aug 2017 18:38:35 -0500 Subject: [PATCH 23/45] cythonization type defs --- ccd/models/{lasso.py => lasso.pyx} | 29 ++++++++++++++++++++++++----- ccd/models/tmask.pyx | 24 ++++++++---------------- ccd/procedures.pyx | 2 +- 3 files changed, 33 insertions(+), 22 deletions(-) rename ccd/models/{lasso.py => lasso.pyx} (69%) diff --git a/ccd/models/lasso.py b/ccd/models/lasso.pyx similarity index 69% rename from ccd/models/lasso.py rename to ccd/models/lasso.pyx index f38452a..dc04ec6 100644 --- a/ccd/models/lasso.py +++ b/ccd/models/lasso.pyx @@ -1,12 +1,22 @@ +# cython: profile=True import numpy as np +cimport numpy as np + +from cpython cimport bool + from ccd.models import FittedModel from ccd.math_utils import calc_rmse -#from ccd.models.lasso_fit import ElasticNet -#from sklearn import linear_model +ctypedef np.float64_t STYPE_t +ctypedef float FTYPE_t +ctypedef int ITYPE_t +ctypedef bool BTYPE_t +ctypedef np.long_t LTYPE_t -def coefficient_matrix(dates, avg_days_yr, num_coefficients): +cdef np.ndarray coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, + FTYPE_t avg_days_yr, + ITYPE_t num_coefficients): """ Fourier transform function to be used for the matrix of inputs for model fitting @@ -42,7 +52,13 @@ def coefficient_matrix(dates, avg_days_yr, num_coefficients): return matrix -def fitted_model(dates, spectra_obs, max_iter, avg_days_yr, num_coefficients, lm): +cpdef fitted_model(np.ndarray[LTYPE_t, ndim=1] dates, + np.ndarray[STYPE_t, ndim=1] spectra_obs, + ITYPE_t max_iter, + FTYPE_t avg_days_yr, + ITYPE_t num_coefficients, + object lm): + """Create a fully fitted lasso model. Args: @@ -59,6 +75,7 @@ def fitted_model(dates, spectra_obs, max_iter, avg_days_yr, num_coefficients, lm Example: fitted_model(dates, obs).predict(...) """ + #print("*** spectra_obs: {} {}".format(spectra_obs.ndim, spectra_obs.dtype)) coef_matrix = coefficient_matrix(dates, avg_days_yr, num_coefficients) model = lm.fit(coef_matrix, spectra_obs) #model = ElasticNet().fit(coef_matrix, spectra_obs) @@ -71,7 +88,9 @@ def fitted_model(dates, spectra_obs, max_iter, avg_days_yr, num_coefficients, lm return FittedModel(fitted_model=model, rmse=rmse, residual=residuals) -def predict(model, dates, avg_days_yr): +cpdef predict(object model, + np.ndarray[LTYPE_t, ndim=1] dates, + FTYPE_t avg_days_yr): coef_matrix = coefficient_matrix(dates, avg_days_yr, 8) return model.fitted_model.predict(coef_matrix) diff --git a/ccd/models/tmask.pyx b/ccd/models/tmask.pyx index 9e26250..b279a6a 100644 --- a/ccd/models/tmask.pyx +++ b/ccd/models/tmask.pyx @@ -16,14 +16,6 @@ ctypedef np.long_t LTYPE_t log = logging.getLogger(__name__) -np_pi = np.pi -np_ceil = np.ceil -np_ones = np.ones -np_cos = np.cos -np_sin = np.sin -np_zeros = np.zeros -np_abs = np.abs - cpdef np.ndarray tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, FTYPE_t avg_days_yr): @@ -35,17 +27,17 @@ cpdef np.ndarray tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, Returns: Populated numpy array with coefficient values """ - cdef FTYPE_t annual_cycle = 2*np_pi/avg_days_yr + cdef FTYPE_t annual_cycle = 2*np.pi/avg_days_yr cdef STYPE_t observation_cycle = annual_cycle / np.ceil((dates[-1] - dates[0]) / avg_days_yr) ac_dates = annual_cycle * dates oc_dates = observation_cycle * dates - cdef np.ndarray[STYPE_t, ndim=2] matrix = np_ones(shape=(dates.shape[0], 5), order='F') - matrix[:, 0] = np_cos(ac_dates) - matrix[:, 1] = np_sin(ac_dates) - matrix[:, 2] = np_cos(oc_dates) - matrix[:, 3] = np_sin(oc_dates) + cdef np.ndarray[STYPE_t, ndim=2] matrix = np.ones(shape=(dates.shape[0], 5), order='F') + matrix[:, 0] = np.cos(ac_dates) + matrix[:, 1] = np.sin(ac_dates) + matrix[:, 2] = np.cos(oc_dates) + matrix[:, 3] = np.sin(oc_dates) #print("** matrix: {} {}".format(matrix.ndim, matrix.dtype)) return matrix @@ -82,7 +74,7 @@ cpdef tmask(np.ndarray[LTYPE_t, ndim=1] dates, #_, sample_count = observations.shape[0] cdef ITYPE_t sample_count = observations.shape[1] #print("sample_count {} ".format(type(sample_count))) - cdef np.ndarray outliers = np_zeros(sample_count, dtype=bool) + cdef np.ndarray outliers = np.zeros(sample_count, dtype=bool) #print("outliers {} {} {}".format(type(outliers), outliers.ndim, outliers.dtype)) # For each band, determine if the delta between predicted and actual @@ -91,7 +83,7 @@ cpdef tmask(np.ndarray[LTYPE_t, ndim=1] dates, for band_ix in bands: fit = regression_fit(tmask_matrix, observations[band_ix]) predicted = fit.predict(tmask_matrix) - outliers += np_abs(predicted - observations[band_ix]) > variogram[band_ix] * t_const + outliers += np.abs(predicted - observations[band_ix]) > variogram[band_ix] * t_const # Keep all observations that aren't outliers. return outliers diff --git a/ccd/procedures.pyx b/ccd/procedures.pyx index ca078e1..b853e6d 100644 --- a/ccd/procedures.pyx +++ b/ccd/procedures.pyx @@ -669,7 +669,7 @@ def lookback(dates, observations, model_window, models, previous_break, Args: dates: list of ordinal days - observations: spectral values across bands + observations: values across bands model_window: current window of values that is being considered models: currently fitted models for the model_window previous_break: index value of the previous break point, or the start From 26c4e57d97b48bc98bf248a6170710867663c319 Mon Sep 17 00:00:00 2001 From: clay austin Date: Tue, 22 Aug 2017 08:34:42 -0500 Subject: [PATCH 24/45] move robust_fit import to tmask module, slight improvement --- ccd/models/tmask.pyx | 9 ++++----- ccd/procedures.pyx | 5 +---- 2 files changed, 5 insertions(+), 9 deletions(-) diff --git a/ccd/models/tmask.pyx b/ccd/models/tmask.pyx index b279a6a..d781d9c 100644 --- a/ccd/models/tmask.pyx +++ b/ccd/models/tmask.pyx @@ -11,8 +11,7 @@ ctypedef int ITYPE_t ctypedef bool BTYPE_t ctypedef np.long_t LTYPE_t -#from ccd.models import robust_fit - +from ccd.models.robust_fit import RLM log = logging.getLogger(__name__) @@ -47,8 +46,7 @@ cpdef tmask(np.ndarray[LTYPE_t, ndim=1] dates, np.ndarray[STYPE_t, ndim=1] variogram, list bands, FTYPE_t t_const, - FTYPE_t avg_days_yr, - object regression_fit): + FTYPE_t avg_days_yr): """Produce an index for filtering outliers. Arguments: @@ -81,7 +79,8 @@ cpdef tmask(np.ndarray[LTYPE_t, ndim=1] dates, # values exceeds the threshold. If it does, then it is an outlier. #regression_fit = regression.fit for band_ix in bands: - fit = regression_fit(tmask_matrix, observations[band_ix]) + #fit = regression_fit(tmask_matrix, observations[band_ix]) + fit = RLM(maxiter=5).fit(tmask_matrix, observations[band_ix]) predicted = fit.predict(tmask_matrix) outliers += np.abs(predicted - observations[band_ix]) > variogram[band_ix] * t_const diff --git a/ccd/procedures.pyx b/ccd/procedures.pyx index b853e6d..5f7b719 100644 --- a/ccd/procedures.pyx +++ b/ccd/procedures.pyx @@ -36,9 +36,6 @@ from ccd.models import results_to_changemodel, tmask from ccd.math_utils import kelvin_to_celsius, adjusted_variogram, euclidean_norm from sklearn.linear_model import Lasso -from ccd.models import robust_fit - -robust_fit_regression = robust_fit.RLM(maxiter=5).fit log = logging.getLogger(__name__) @@ -416,7 +413,7 @@ def initialize(dates, observations, fitter_fn, model_window, processing_mask, tmask_outliers = tmask_tmask(period[model_window], spectral_obs[:, model_window], variogram, tmask_bands, tmask_scale, - avg_days_yr, robust_fit_regression) + avg_days_yr) tmask_count = np_sum(tmask_outliers) From 355c46bef390b22483d8c4cc073bbcb33bea7bd4 Mon Sep 17 00:00:00 2001 From: clay austin Date: Tue, 22 Aug 2017 08:39:26 -0500 Subject: [PATCH 25/45] move lasso import --- ccd/procedures.pyx | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/ccd/procedures.pyx b/ccd/procedures.pyx index 5f7b719..1f7a880 100644 --- a/ccd/procedures.pyx +++ b/ccd/procedures.pyx @@ -35,7 +35,7 @@ from ccd.change import enough_samples, enough_time,\ from ccd.models import results_to_changemodel, tmask from ccd.math_utils import kelvin_to_celsius, adjusted_variogram, euclidean_norm -from sklearn.linear_model import Lasso + log = logging.getLogger(__name__) @@ -241,6 +241,8 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): curve_qa = proc_params.CURVE_QA detection_bands = proc_params.DETECTION_BANDS + from sklearn.linear_model import Lasso + lasso = Lasso(max_iter=proc_params.LASSO_MAX_ITER) ldebug('Build change models - dates: %s, obs: %s, ' From a7cd17d01173e7c97c389426e7bc843d9bc798df Mon Sep 17 00:00:00 2001 From: clay austin Date: Tue, 22 Aug 2017 10:40:39 -0500 Subject: [PATCH 26/45] proc_params to dict, move tmask import and coef func declaration --- ccd/__init__.py | 2 +- ccd/models/tmask.pyx | 2 +- ccd/procedures.pyx | 130 ++++++++++++++++++++++++------------------- ccd/qa.py | 6 +- 4 files changed, 79 insertions(+), 61 deletions(-) diff --git a/ccd/__init__.py b/ccd/__init__.py index 5351629..8fdb079 100644 --- a/ccd/__init__.py +++ b/ccd/__init__.py @@ -168,7 +168,7 @@ def detect(dates, blues, greens, reds, nirs, # Determine which procedure to use for the detection procedure = __determine_fit_procedure(quality, proc_params) - results = procedure(dates, spectra, fitter_fn, quality, proc_params) + results = procedure(dates, spectra, fitter_fn, quality, dict(proc_params)) log.debug('Total time for algorithm: %s', time.time() - t1) # call detect and return results as the detections namedtuple diff --git a/ccd/models/tmask.pyx b/ccd/models/tmask.pyx index d781d9c..55f5239 100644 --- a/ccd/models/tmask.pyx +++ b/ccd/models/tmask.pyx @@ -16,7 +16,7 @@ from ccd.models.robust_fit import RLM log = logging.getLogger(__name__) -cpdef np.ndarray tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, +cdef np.ndarray tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, FTYPE_t avg_days_yr): """Coefficient matrix that is used for Tmask modeling diff --git a/ccd/procedures.pyx b/ccd/procedures.pyx index 1f7a880..616c677 100644 --- a/ccd/procedures.pyx +++ b/ccd/procedures.pyx @@ -25,6 +25,7 @@ For more information please refer to the pyccd Algorithm Description Document. """ import logging import numpy as np +cimport numpy as np np_array = np.array np_sum = np.sum @@ -32,7 +33,7 @@ from ccd import qa from ccd.change import enough_samples, enough_time,\ update_processing_mask, stable, determine_num_coefs, calc_residuals, \ find_closest_doy, change_magnitude, detect_change, detect_outlier -from ccd.models import results_to_changemodel, tmask +from ccd.models import results_to_changemodel#, tmask from ccd.math_utils import kelvin_to_celsius, adjusted_variogram, euclidean_norm @@ -40,7 +41,7 @@ from ccd.math_utils import kelvin_to_celsius, adjusted_variogram, euclidean_norm log = logging.getLogger(__name__) ldebug = log.debug -tmask_tmask = tmask.tmask +#tmask_tmask = tmask.tmask qa_enough_clear = qa.enough_clear qa_enough_snow = qa.enough_snow qa_snow_procedure_filter = qa.snow_procedure_filter @@ -63,12 +64,12 @@ def fit_procedure(quality, proc_params): the curves """ # TODO do this better - clear = proc_params.QA_CLEAR - water = proc_params.QA_WATER - fill = proc_params.QA_FILL - snow = proc_params.QA_SNOW - clear_thresh = proc_params.CLEAR_PCT_THRESHOLD - snow_thresh = proc_params.SNOW_PCT_THRESHOLD + clear = proc_params['QA_CLEAR'] + water = proc_params['QA_WATER'] + fill = proc_params['QA_FILL'] + snow = proc_params['QA_SNOW'] + clear_thresh = proc_params['CLEAR_PCT_THRESHOLD'] + snow_thresh = proc_params['SNOW_PCT_THRESHOLD'] if not qa_enough_clear(quality, clear, water, fill, clear_thresh): if qa_enough_snow(quality, clear, water, snow, snow_thresh): @@ -109,11 +110,11 @@ def permanent_snow_procedure(dates, observations, fitter_fn, quality, for model fitting """ # TODO do this better - meow_size = proc_params.MEOW_SIZE - curve_qa = proc_params.CURVE_QA['PERSIST_SNOW'] - avg_days_yr = proc_params.AVG_DAYS_YR - fit_max_iter = proc_params.LASSO_MAX_ITER - num_coef = proc_params.COEFFICIENT_MIN + meow_size = proc_params['MEOW_SIZE'] + curve_qa = proc_params['CURVE_QA']['PERSIST_SNOW'] + avg_days_yr = proc_params['AVG_DAYS_YR'] + fit_max_iter = proc_params['LASSO_MAX_ITER'] + num_coef = proc_params['COEFFICIENT_MIN'] processing_mask = qa_snow_procedure_filter(observations, quality, dates, proc_params) @@ -167,11 +168,11 @@ def insufficient_clear_procedure(dates, observations, fitter_fn, quality, for model fitting """ # TODO do this better - meow_size = proc_params.MEOW_SIZE, - curve_qa = proc_params.CURVE_QA['INSUF_CLEAR'] - avg_days_yr = proc_params.AVG_DAYS_YR - fit_max_iter = proc_params.LASSO_MAX_ITER - num_coef = proc_params.COEFFICIENT_MIN + meow_size = proc_params['MEOW_SIZE'] + curve_qa = proc_params['CURVE_QA']['INSUF_CLEAR'] + avg_days_yr = proc_params['AVG_DAYS_YR'] + fit_max_iter = proc_params['LASSO_MAX_ITER'] + num_coef = proc_params['COEFFICIENT_MIN'] processing_mask = qa_insufficient_clear_filter(observations, quality, dates, proc_params) @@ -199,7 +200,12 @@ def insufficient_clear_procedure(dates, observations, fitter_fn, quality, return (result,), processing_mask -def standard_procedure(dates, observations, fitter_fn, quality, proc_params): +#cpdef standard_procedure(dates, observations, fitter_fn, quality, proc_params): +cpdef tuple standard_procedure(np.ndarray dates, + np.ndarray observations, + object fitter_fn, + np.ndarray quality, + dict proc_params): """ Runs the core change detection algorithm. @@ -235,19 +241,19 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): for model fitting """ # TODO do this better - meow_size = proc_params.MEOW_SIZE - peek_size = proc_params.PEEK_SIZE - thermal_idx = proc_params.THERMAL_IDX - curve_qa = proc_params.CURVE_QA - detection_bands = proc_params.DETECTION_BANDS + meow_size = proc_params['MEOW_SIZE'] + peek_size = proc_params['PEEK_SIZE'] + thermal_idx = proc_params['THERMAL_IDX'] + curve_qa = proc_params['CURVE_QA'] + detection_bands = proc_params['DETECTION_BANDS'] from sklearn.linear_model import Lasso - lasso = Lasso(max_iter=proc_params.LASSO_MAX_ITER) + lasso = Lasso(max_iter=proc_params['LASSO_MAX_ITER']) - ldebug('Build change models - dates: %s, obs: %s, ' - 'meow_size: %s, peek_size: %s', - dates.shape[0], observations.shape, meow_size, peek_size) + #ldebug('Build change models - dates: %s, obs: %s, ' + # 'meow_size: %s, peek_size: %s', + # dates.shape[0], observations.shape, meow_size, peek_size) # First we need to filter the observations based on the spectra values # and qa information and convert kelvin to celsius. @@ -361,8 +367,16 @@ def standard_procedure(dates, observations, fitter_fn, quality, proc_params): return results, processing_mask -def initialize(dates, observations, fitter_fn, model_window, processing_mask, - variogram, proc_params, lasso): +#cpdef initialize(dates, observations, fitter_fn, model_window, processing_mask, +# variogram, proc_params, lasso): +cdef tuple initialize(np.ndarray dates, + np.ndarray observations, + object fitter_fn, + slice model_window, + np.ndarray processing_mask, + np.ndarray variogram, + dict proc_params, + object lasso): """ Determine a good starting point at which to build off of for the subsequent process of change detection, both forward and backward. @@ -382,15 +396,19 @@ def initialize(dates, observations, fitter_fn, model_window, processing_mask, slice: model window that was deemed to be a stable start namedtuple: fitted regression models """ + + from ccd.models import tmask + tmask_tmask = tmask.tmask + # TODO do this better - meow_size = proc_params.MEOW_SIZE - day_delta = proc_params.DAY_DELTA - detection_bands = proc_params.DETECTION_BANDS - tmask_bands = proc_params.TMASK_BANDS - change_thresh = proc_params.CHANGE_THRESHOLD - tmask_scale = proc_params.T_CONST - avg_days_yr = proc_params.AVG_DAYS_YR - fit_max_iter = proc_params.LASSO_MAX_ITER + meow_size = proc_params['MEOW_SIZE'] + day_delta = proc_params['DAY_DELTA'] + detection_bands = proc_params['DETECTION_BANDS'] + tmask_bands = proc_params['TMASK_BANDS'] + change_thresh = proc_params['CHANGE_THRESHOLD'] + tmask_scale = proc_params['T_CONST'] + avg_days_yr = proc_params['AVG_DAYS_YR'] + fit_max_iter = proc_params['LASSO_MAX_ITER'] period = dates[processing_mask] spectral_obs = observations[:, processing_mask] @@ -503,16 +521,16 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, slice: model window """ # TODO do this better - peek_size = proc_params.PEEK_SIZE - coef_min = proc_params.COEFFICIENT_MIN - coef_mid = proc_params.COEFFICIENT_MID - coef_max = proc_params.COEFFICIENT_MAX - num_obs_fact = proc_params.NUM_OBS_FACTOR - detection_bands = proc_params.DETECTION_BANDS - change_thresh = proc_params.CHANGE_THRESHOLD - outlier_thresh = proc_params.OUTLIER_THRESHOLD - avg_days_yr = proc_params.AVG_DAYS_YR - fit_max_iter = proc_params.LASSO_MAX_ITER + peek_size = proc_params['PEEK_SIZE'] + coef_min = proc_params['COEFFICIENT_MIN'] + coef_mid = proc_params['COEFFICIENT_MID'] + coef_max = proc_params['COEFFICIENT_MAX'] + num_obs_fact = proc_params['NUM_OBS_FACTOR'] + detection_bands = proc_params['DETECTION_BANDS'] + change_thresh = proc_params['CHANGE_THRESHOLD'] + outlier_thresh = proc_params['OUTLIER_THRESHOLD'] + avg_days_yr = proc_params['AVG_DAYS_YR'] + fit_max_iter = proc_params['LASSO_MAX_ITER'] # Used for loops. num_detectbands = len(detection_bands) @@ -684,11 +702,11 @@ def lookback(dates, observations, model_window, models, previous_break, array: indices of data that have been flagged as outliers """ # TODO do this better - peek_size = proc_params.PEEK_SIZE - detection_bands = proc_params.DETECTION_BANDS - change_thresh = proc_params.CHANGE_THRESHOLD - outlier_thresh = proc_params.OUTLIER_THRESHOLD - avg_days_yr = proc_params.AVG_DAYS_YR + peek_size = proc_params['PEEK_SIZE'] + detection_bands = proc_params['DETECTION_BANDS'] + change_thresh = proc_params['CHANGE_THRESHOLD'] + outlier_thresh = proc_params['OUTLIER_THRESHOLD'] + avg_days_yr = proc_params['AVG_DAYS_YR'] ldebug('Previous break: %s model window: %s', previous_break, model_window) @@ -773,9 +791,9 @@ def catch(dates, observations, fitter_fn, processing_mask, model_window, """ # TODO do this better - avg_days_yr = proc_params.AVG_DAYS_YR - fit_max_iter = proc_params.LASSO_MAX_ITER - num_coef = proc_params.COEFFICIENT_MIN + avg_days_yr = proc_params['AVG_DAYS_YR'] + fit_max_iter = proc_params['LASSO_MAX_ITER'] + num_coef = proc_params['COEFFICIENT_MIN'] ldebug('Catching observations: %s', model_window) period = dates[processing_mask] diff --git a/ccd/qa.py b/ccd/qa.py index 4bdde4f..cbef30a 100644 --- a/ccd/qa.py +++ b/ccd/qa.py @@ -252,9 +252,9 @@ def standard_procedure_filter(observations, quality, dates, proc_params): Returns: 1-d boolean ndarray """ - thermal_idx = proc_params.THERMAL_IDX - clear = proc_params.QA_CLEAR - water = proc_params.QA_WATER + thermal_idx = proc_params['THERMAL_IDX'] + clear = proc_params['QA_CLEAR'] + water = proc_params['QA_WATER'] mask = ((mask_value(quality, water) | mask_value(quality, clear)) & filter_thermal_celsius(observations[thermal_idx]) & From a93ea75d4d91d8696c1d42ac7ba6a250f81cf5db Mon Sep 17 00:00:00 2001 From: clay austin Date: Tue, 22 Aug 2017 11:19:18 -0500 Subject: [PATCH 27/45] cdef tmask funcs, add pxd for header and type defs --- ccd/models/tmask.pxd | 18 ++++++++++++++++++ ccd/models/tmask.pyx | 20 ++++++-------------- ccd/procedures.pyx | 17 ++++++----------- 3 files changed, 30 insertions(+), 25 deletions(-) create mode 100644 ccd/models/tmask.pxd diff --git a/ccd/models/tmask.pxd b/ccd/models/tmask.pxd new file mode 100644 index 0000000..5ced7de --- /dev/null +++ b/ccd/models/tmask.pxd @@ -0,0 +1,18 @@ +import numpy as np +cimport numpy as np + +from cpython cimport bool + +ctypedef np.float64_t STYPE_t +ctypedef float FTYPE_t +ctypedef int ITYPE_t +ctypedef bool BTYPE_t +ctypedef np.long_t LTYPE_t + + +cdef np.ndarray tmask(np.ndarray[LTYPE_t, ndim=1], + np.ndarray[STYPE_t, ndim=2], + np.ndarray[STYPE_t, ndim=1], + list, + FTYPE_t, + FTYPE_t) \ No newline at end of file diff --git a/ccd/models/tmask.pyx b/ccd/models/tmask.pyx index 55f5239..9145c66 100644 --- a/ccd/models/tmask.pyx +++ b/ccd/models/tmask.pyx @@ -3,14 +3,6 @@ import logging import numpy as np cimport numpy as np -from cpython cimport bool - -ctypedef np.float64_t STYPE_t -ctypedef float FTYPE_t -ctypedef int ITYPE_t -ctypedef bool BTYPE_t -ctypedef np.long_t LTYPE_t - from ccd.models.robust_fit import RLM log = logging.getLogger(__name__) @@ -41,12 +33,12 @@ cdef np.ndarray tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, return matrix -cpdef tmask(np.ndarray[LTYPE_t, ndim=1] dates, - np.ndarray[STYPE_t, ndim=2] observations, - np.ndarray[STYPE_t, ndim=1] variogram, - list bands, - FTYPE_t t_const, - FTYPE_t avg_days_yr): +cdef np.ndarray tmask(np.ndarray[LTYPE_t, ndim=1] dates, + np.ndarray[STYPE_t, ndim=2] observations, + np.ndarray[STYPE_t, ndim=1] variogram, + list bands, + FTYPE_t t_const, + FTYPE_t avg_days_yr): """Produce an index for filtering outliers. Arguments: diff --git a/ccd/procedures.pyx b/ccd/procedures.pyx index 616c677..f6a730a 100644 --- a/ccd/procedures.pyx +++ b/ccd/procedures.pyx @@ -33,15 +33,15 @@ from ccd import qa from ccd.change import enough_samples, enough_time,\ update_processing_mask, stable, determine_num_coefs, calc_residuals, \ find_closest_doy, change_magnitude, detect_change, detect_outlier -from ccd.models import results_to_changemodel#, tmask +from ccd.models import results_to_changemodel from ccd.math_utils import kelvin_to_celsius, adjusted_variogram, euclidean_norm +from ccd.models.tmask cimport tmask log = logging.getLogger(__name__) ldebug = log.debug -#tmask_tmask = tmask.tmask qa_enough_clear = qa.enough_clear qa_enough_snow = qa.enough_snow qa_snow_procedure_filter = qa.snow_procedure_filter @@ -367,8 +367,6 @@ cpdef tuple standard_procedure(np.ndarray dates, return results, processing_mask -#cpdef initialize(dates, observations, fitter_fn, model_window, processing_mask, -# variogram, proc_params, lasso): cdef tuple initialize(np.ndarray dates, np.ndarray observations, object fitter_fn, @@ -397,9 +395,6 @@ cdef tuple initialize(np.ndarray dates, namedtuple: fitted regression models """ - from ccd.models import tmask - tmask_tmask = tmask.tmask - # TODO do this better meow_size = proc_params['MEOW_SIZE'] day_delta = proc_params['DAY_DELTA'] @@ -430,10 +425,10 @@ cdef tuple initialize(np.ndarray dates, # Count outliers in the window, if there are too many outliers then # try again. - tmask_outliers = tmask_tmask(period[model_window], - spectral_obs[:, model_window], - variogram, tmask_bands, tmask_scale, - avg_days_yr) + tmask_outliers = tmask(period[model_window], + spectral_obs[:, model_window], + variogram, tmask_bands, tmask_scale, + avg_days_yr) tmask_count = np_sum(tmask_outliers) From a5d78e3cacec016e97fa665657ca8882f19ece64 Mon Sep 17 00:00:00 2001 From: clay austin Date: Tue, 22 Aug 2017 15:31:54 -0500 Subject: [PATCH 28/45] moar cython func type defs --- ccd/models/tmask.pyx | 6 +++--- ccd/procedures.pyx | 50 +++++++++++++++++++++++++++++++++----------- 2 files changed, 41 insertions(+), 15 deletions(-) diff --git a/ccd/models/tmask.pyx b/ccd/models/tmask.pyx index 9145c66..081aefe 100644 --- a/ccd/models/tmask.pyx +++ b/ccd/models/tmask.pyx @@ -7,9 +7,8 @@ from ccd.models.robust_fit import RLM log = logging.getLogger(__name__) - -cdef np.ndarray tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, - FTYPE_t avg_days_yr): +cdef np.ndarray[STYPE_t, ndim=2] tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, + FTYPE_t avg_days_yr): """Coefficient matrix that is used for Tmask modeling Args: @@ -58,6 +57,7 @@ cdef np.ndarray tmask(np.ndarray[LTYPE_t, ndim=1] dates, # regression = lm.LinearRegression() #regression = robust_fit.RLM(maxiter=5) cdef np.ndarray[STYPE_t, ndim=2] tmask_matrix = tmask_coefficient_matrix(dates, avg_days_yr) + #print("tmask_matrix {} {} {}".format(type(tmask_matrix), tmask_matrix.ndim, tmask_matrix.dtype)) # Accumulator for outliers. This starts off as a list of False values # because we don't assume anything is an outlier. diff --git a/ccd/procedures.pyx b/ccd/procedures.pyx index f6a730a..7a5b756 100644 --- a/ccd/procedures.pyx +++ b/ccd/procedures.pyx @@ -38,6 +38,14 @@ from ccd.math_utils import kelvin_to_celsius, adjusted_variogram, euclidean_norm from ccd.models.tmask cimport tmask +from cpython cimport bool + +ctypedef np.float64_t STYPE_t +ctypedef float FTYPE_t +ctypedef int ITYPE_t +ctypedef bool BTYPE_t +ctypedef np.long_t LTYPE_t + log = logging.getLogger(__name__) @@ -201,10 +209,10 @@ def insufficient_clear_procedure(dates, observations, fitter_fn, quality, #cpdef standard_procedure(dates, observations, fitter_fn, quality, proc_params): -cpdef tuple standard_procedure(np.ndarray dates, - np.ndarray observations, +cpdef tuple standard_procedure(np.ndarray[LTYPE_t, ndim=1] dates, + np.ndarray[STYPE_t, ndim=2] observations, object fitter_fn, - np.ndarray quality, + np.ndarray[LTYPE_t, ndim=1] quality, dict proc_params): """ Runs the core change detection algorithm. @@ -367,12 +375,12 @@ cpdef tuple standard_procedure(np.ndarray dates, return results, processing_mask -cdef tuple initialize(np.ndarray dates, - np.ndarray observations, +cdef tuple initialize(np.ndarray[LTYPE_t, ndim=1] dates, + np.ndarray[STYPE_t, ndim=2] observations, object fitter_fn, slice model_window, np.ndarray processing_mask, - np.ndarray variogram, + np.ndarray[STYPE_t, ndim=1] variogram, dict proc_params, object lasso): """ @@ -492,8 +500,14 @@ cdef tuple initialize(np.ndarray dates, return model_window, models, processing_mask -def lookforward(dates, observations, model_window, fitter_fn, processing_mask, - variogram, proc_params, lasso): +cdef tuple lookforward(np.ndarray[LTYPE_t, ndim=1] dates, + np.ndarray[STYPE_t, ndim=2] observations, + slice model_window, + object fitter_fn, + np.ndarray processing_mask, + np.ndarray[STYPE_t, ndim=1] variogram, + dict proc_params, + object lasso): """Increase observation window until change is detected or we are out of observations. @@ -672,8 +686,14 @@ def lookforward(dates, observations, model_window, fitter_fn, processing_mask, return result, processing_mask, model_window -def lookback(dates, observations, model_window, models, previous_break, - processing_mask, variogram, proc_params): +cdef tuple lookback(np.ndarray[LTYPE_t, ndim=1] dates, + np.ndarray[STYPE_t, ndim=2] observations, + slice model_window, + list models, + ITYPE_t previous_break, + np.ndarray processing_mask, + np.ndarray[STYPE_t, ndim=1] variogram, + dict proc_params): """ Special case when there is a gap between the start of a time series model and the previous model break point, this can include values that were @@ -765,8 +785,14 @@ def lookback(dates, observations, model_window, models, previous_break, return model_window, processing_mask -def catch(dates, observations, fitter_fn, processing_mask, model_window, - curve_qa, proc_params, lasso): +cdef catch(np.ndarray[LTYPE_t, ndim=1] dates, + np.ndarray[STYPE_t, ndim=2] observations, + object fitter_fn, + np.ndarray processing_mask, + slice model_window, + ITYPE_t curve_qa, + dict proc_params, + object lasso): """ Handle special cases where general models just need to be fitted and return their results. From d8fdc156340d4ade24ea53c1fe8d0f05eec5b0d7 Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 23 Aug 2017 14:22:58 -0500 Subject: [PATCH 29/45] update travis config, setup.py for install with C extensions --- .gitignore | 2 +- .travis.yml | 3 +- README.md | 3 + ccd/models/lasso_fit.py | 329 ---------------------------------------- setup.py | 39 +++-- 5 files changed, 29 insertions(+), 347 deletions(-) delete mode 100644 ccd/models/lasso_fit.py diff --git a/.gitignore b/.gitignore index 714a014..0a12ae7 100644 --- a/.gitignore +++ b/.gitignore @@ -13,5 +13,5 @@ pip-selfcheck.json *.stat *.dot *.so -*.c + diff --git a/.travis.yml b/.travis.yml index 2fedeea..b0ad725 100644 --- a/.travis.yml +++ b/.travis.yml @@ -1,11 +1,12 @@ language: python python: -- '3.4' - '3.5' +- '3.6' install: - pip install --upgrade pip +- pip instal numpy - pip install .[test] script: pytest diff --git a/README.md b/README.md index b174c07..5ea7bab 100644 --- a/README.md +++ b/README.md @@ -84,6 +84,9 @@ System requirements (Centos) * graphviz * python-virtualenv +Python requirements +* numpy (for install of C compiled extensions) + It's highly recommended to do all your development & testing in a virtual environment. ```bash user@dev:/home/user/$ mkdir pyccd diff --git a/ccd/models/lasso_fit.py b/ccd/models/lasso_fit.py deleted file mode 100644 index 05ef003..0000000 --- a/ccd/models/lasso_fit.py +++ /dev/null @@ -1,329 +0,0 @@ -import numpy as np -import warnings -import six -import scipy.sparse as sp - -#from sklearn.utils import check_array, check_X_y -from sklearn.utils import check_X_y - -from sklearn.linear_model.base import _pre_fit -from sklearn.externals.six.moves import xrange -from sklearn.linear_model import enet_path -from sklearn.linear_model.base import LinearModel -from sklearn.base import RegressorMixin - -from abc import ABCMeta -from sklearn.base import BaseEstimator -from sklearn.utils.validation import check_is_fitted -from sklearn.utils.extmath import safe_sparse_dot - -def _assert_all_finite(X): - """Like assert_all_finite, but only for ndarray.""" - X = np.asanyarray(X) - # First try an O(n) time, O(1) space solution for the common case that - # everything is finite; fall back to O(n) space np.isfinite to prevent - # false positives from overflow in sum method. - if (X.dtype.char in np.typecodes['AllFloat'] and not np.isfinite(X.sum()) - and not np.isfinite(X).all()): - raise ValueError("Input contains NaN, infinity" - " or a value too large for %r." % X.dtype) - - -def _ensure_sparse_format(spmatrix, accept_sparse, dtype, copy, - force_all_finite): - if accept_sparse in [None, False]: - raise TypeError('A sparse matrix was passed, but dense ' - 'data is required. Use X.toarray() to ' - 'convert to a dense numpy array.') - if dtype is None: - dtype = spmatrix.dtype - - changed_format = False - if (isinstance(accept_sparse, (list, tuple)) - and spmatrix.format not in accept_sparse): - # create new with correct sparse - spmatrix = spmatrix.asformat(accept_sparse[0]) - changed_format = True - - if dtype != spmatrix.dtype: - # convert dtype - spmatrix = spmatrix.astype(dtype) - elif copy and not changed_format: - # force copy - spmatrix = spmatrix.copy() - - if force_all_finite: - if not hasattr(spmatrix, "data"): - warnings.warn("Can't check %s sparse matrix for nan or inf." - % spmatrix.format) - else: - _assert_all_finite(spmatrix.data) - return spmatrix - - -def check_array(array, accept_sparse=None, dtype="numeric", order=None, - copy=False, force_all_finite=True, ensure_2d=True, - allow_nd=False, ensure_min_samples=1, ensure_min_features=1, - warn_on_dtype=False, estimator=None): - if isinstance(accept_sparse, str): - accept_sparse = [accept_sparse] - - # store whether originally we wanted numeric dtype - dtype_numeric = dtype == "numeric" - - dtype_orig = getattr(array, "dtype", None) - if not hasattr(dtype_orig, 'kind'): - # not a data type (e.g. a column named dtype in a pandas DataFrame) - dtype_orig = None - - if dtype_numeric: - if dtype_orig is not None and dtype_orig.kind == "O": - # if input is object, convert to float. - dtype = np.float64 - else: - dtype = None - - if isinstance(dtype, (list, tuple)): - if dtype_orig is not None and dtype_orig in dtype: - # no dtype conversion required - dtype = None - else: - # dtype conversion required. Let's select the first element of the - # list of accepted types. - dtype = dtype[0] - - if estimator is not None: - if isinstance(estimator, six.string_types): - estimator_name = estimator - else: - estimator_name = estimator.__class__.__name__ - else: - estimator_name = "Estimator" - context = " by %s" % estimator_name if estimator is not None else "" - - if sp.issparse(array): - array = _ensure_sparse_format(array, accept_sparse, dtype, copy, - force_all_finite) - else: - array = np.array(array, dtype=dtype, order=order, copy=copy) - - if ensure_2d: - if array.ndim == 1: - if ensure_min_samples >= 2: - raise ValueError("%s expects at least 2 samples provided " - "in a 2 dimensional array-like input" - % estimator_name) - warnings.warn( - "Passing 1d arrays as data is deprecated in 0.17 and will " - "raise ValueError in 0.19. Reshape your data either using " - "X.reshape(-1, 1) if your data has a single feature or " - "X.reshape(1, -1) if it contains a single sample.", - DeprecationWarning) - array = np.atleast_2d(array) - # To ensure that array flags are maintained - array = np.array(array, dtype=dtype, order=order, copy=copy) - - # make sure we actually converted to numeric: - if dtype_numeric and array.dtype.kind == "O": - array = array.astype(np.float64) - if not allow_nd and array.ndim >= 3: - raise ValueError("Found array with dim %d. %s expected <= 2." - % (array.ndim, estimator_name)) - if force_all_finite: - _assert_all_finite(array) - - shape_repr = _shape_repr(array.shape) - if ensure_min_samples > 0: - n_samples = _num_samples(array) - if n_samples < ensure_min_samples: - raise ValueError("Found array with %d sample(s) (shape=%s) while a" - " minimum of %d is required%s." - % (n_samples, shape_repr, ensure_min_samples, - context)) - - if ensure_min_features > 0 and array.ndim == 2: - n_features = array.shape[1] - if n_features < ensure_min_features: - raise ValueError("Found array with %d feature(s) (shape=%s) while" - " a minimum of %d is required%s." - % (n_features, shape_repr, ensure_min_features, - context)) - - if warn_on_dtype and dtype_orig is not None and array.dtype != dtype_orig: - msg = ("Data with input dtype %s was converted to %s%s." - % (dtype_orig, array.dtype, context)) - warnings.warn(msg, _DataConversionWarning) - return array - - -class LinearModel(six.with_metaclass(ABCMeta, BaseEstimator)): - """Base class for Linear Models""" - - # @abstractmethod - # def fit(self, X, y): - # """Fit model.""" - # - # @deprecated(" and will be removed in 0.19.") - # def decision_function(self, X): - # """Decision function of the linear model. - # - # Parameters - # ---------- - # X : {array-like, sparse matrix}, shape = (n_samples, n_features) - # Samples. - # - # Returns - # ------- - # C : array, shape = (n_samples,) - # Returns predicted values. - # """ - # return self._decision_function(X) - - def _decision_function(self, X): - check_is_fitted(self, "coef_") - - X = check_array(X, accept_sparse=['csr', 'csc', 'coo']) - return safe_sparse_dot(X, self.coef_.T, - dense_output=True) + self.intercept_ - - def predict(self, X): - """Predict using the linear model - - Parameters - ---------- - X : {array-like, sparse matrix}, shape = (n_samples, n_features) - Samples. - - Returns - ------- - C : array, shape = (n_samples,) - Returns predicted values. - """ - return self._decision_function(X) - - #_preprocess_data = staticmethod(_preprocess_data) - - -class ElasticNet(LinearModel, RegressorMixin): - def __init__(self): - self.alpha = 1.0 - self.l1_ratio = 0.5 - self.coef_ = None - self.fit_intercept = True - self.normalize = False - self.precompute = False - self.max_iter = 1000 - self.copy_X = True - self.tol = 1e-4 - self.warm_start = False - self.positive = False - self.intercept_ = 0.0 - self.random_state = None - self.selection = 'cyclic' - - self.path = enet_path - - def fit(self, X, y, check_input=True): - """Fit model with coordinate descent. - - Parameters - ----------- - X : ndarray or scipy.sparse matrix, (n_samples, n_features) - Data - - y : ndarray, shape (n_samples,) or (n_samples, n_targets) - Target - - check_input : boolean, (default=True) - Allow to bypass several input checking. - Don't use this parameter unless you know what you do. - - Notes - ----- - - Coordinate descent is an algorithm that considers each column of - data at a time hence it will automatically convert the X input - as a Fortran-contiguous numpy array if necessary. - - To avoid memory re-allocation it is advised to allocate the - initial data in memory directly using that format. - """ - - if self.alpha == 0: - warnings.warn("With alpha=0, this algorithm does not converge " - "well. You are advised to use the LinearRegression " - "estimator", stacklevel=2) - - if isinstance(self.precompute, six.string_types): - raise ValueError('precompute should be one of True, False or' - ' array-like. Got %r' % self.precompute) - - # We expect X and y to be float64 or float32 Fortran ordered arrays - # when bypassing checks - if check_input: - X, y = check_X_y(X, y, accept_sparse='csc', - order='F', dtype=[np.float64, np.float32], - copy=self.copy_X and self.fit_intercept, - multi_output=True, y_numeric=True) - y = check_array(y, order='F', copy=False, dtype=X.dtype.type, - ensure_2d=False) - - X, y, X_offset, y_offset, X_scale, precompute, Xy = \ - _pre_fit(X, y, None, self.precompute, self.normalize, - self.fit_intercept, copy=False) - - - if y.ndim == 1: - y = y[:, np.newaxis] - if Xy is not None and Xy.ndim == 1: - Xy = Xy[:, np.newaxis] - - n_samples, n_features = X.shape - n_targets = y.shape[1] - - if self.selection not in ['cyclic', 'random']: - raise ValueError("selection should be either random or cyclic.") - - if not self.warm_start or self.coef_ is None: - coef_ = np.zeros((n_targets, n_features), dtype=X.dtype, - order='F') - else: - coef_ = self.coef_ - if coef_.ndim == 1: - coef_ = coef_[np.newaxis, :] - - dual_gaps_ = np.zeros(n_targets, dtype=X.dtype) - self.n_iter_ = [] - - for k in xrange(n_targets): - if Xy is not None: - this_Xy = Xy[:, k] - else: - this_Xy = None - _, this_coef, this_dual_gap, this_iter = \ - self.path(X, y[:, k], - l1_ratio=self.l1_ratio, eps=None, - n_alphas=None, alphas=[self.alpha], - precompute=precompute, Xy=this_Xy, - fit_intercept=False, normalize=False, copy_X=True, - verbose=False, tol=self.tol, positive=self.positive, - X_offset=X_offset, X_scale=X_scale, return_n_iter=True, - coef_init=coef_[k], max_iter=self.max_iter, - random_state=self.random_state, - selection=self.selection, - check_input=False) - coef_[k] = this_coef[:, 0] - dual_gaps_[k] = this_dual_gap[0] - self.n_iter_.append(this_iter[0]) - - if n_targets == 1: - self.n_iter_ = self.n_iter_[0] - - self.coef_, self.dual_gap_ = map(np.squeeze, [coef_, dual_gaps_]) - #self._set_intercept(X_offset, y_offset, X_scale) - - # workaround since _set_intercept will cast self.coef_ into float64 - self.coef_ = np.asarray(self.coef_, dtype=X.dtype) - - # return self for chaining fit and predict calls - return self diff --git a/setup.py b/setup.py index ce1331d..cf3882b 100644 --- a/setup.py +++ b/setup.py @@ -11,17 +11,29 @@ from setuptools import setup from os import path - -from Cython.Build import cythonize from distutils.extension import Extension import numpy as np -import io +here = path.abspath(path.dirname(__file__)) +np_incl = np.get_include() -here = path.abspath(path.dirname(__file__)) +USE_CYTHON=False +EXT_TYPE=".c" +try: + import cython + USE_CYTHON=True + EXT_TYPE=".pyx" +except ImportError: + print("Cython unavailable") -extensions = [Extension('models', ['ccd/models/*.pyx'], include_dirs=[np.get_include()])] +extensions = [Extension('ccd.models.lasso', ['ccd/models/lasso'+EXT_TYPE], include_dirs=[np_incl]), + Extension('ccd.models.robust_fit', ['ccd/models/robust_fit'+EXT_TYPE], include_dirs=[np_incl]), + Extension('ccd.models.tmask', ['ccd/models/tmask'+EXT_TYPE], include_dirs=[np_incl]), + Extension('ccd.procedures', ['ccd/procedures'+EXT_TYPE], include_dirs=[np_incl])] +if USE_CYTHON: + from Cython.Build import cythonize + extensions = cythonize(extensions) # bring in __version__ and __name from version.py for install. with open(path.join(here, 'ccd', 'version.py')) as h: @@ -54,21 +66,15 @@ 'Development Status :: 4 - Beta', 'Intended Audience :: Developers', 'License :: Public Domain', - - # 'Programming Language :: Python :: 2', - # 'Programming Language :: Python :: 2.7', - # 'Programming Language :: Python :: 3', - # 'Programming Language :: Python :: 3.3', - 'Programming Language :: Python :: 3.4', 'Programming Language :: Python :: 3.5', + 'Programming Language :: Python :: 3.6', ], keywords='python change detection', packages=['ccd', 'ccd.models'], - ext_modules=cythonize(['ccd/models/*.pyx', 'ccd/procedures.pyx']), - include_dirs=[np.get_include()], + ext_modules=extensions, install_requires=['numpy>=1.10.0', 'scipy>=0.18.1', @@ -76,7 +82,8 @@ 'cachetools>=2.0.0', 'click>=6.6', 'click-plugins>=1.0.3', - 'PyYAML>=3.12'], + 'PyYAML>=3.12', + 'cython>=0.26'], extras_require={ 'test': ['aniso8601>=1.1.0', @@ -89,13 +96,13 @@ 'dev': ['jupyter',], }, - setup_requires=['pytest-runner', 'pip'], + setup_requires=['pytest-runner', 'pip', 'numpy'], tests_require=['pytest>=3.0.2'], package_data={ 'ccd': ['parameters.yaml'], }, - + # data_files=[('my_data', ['data/data_file'])], # entry_points={'console_scripts': ['pyccd-detect=ccd.cli:detect', ], }, From 29abca3b8b03b0aea03407cb2cb3319b32574c50 Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 23 Aug 2017 14:23:47 -0500 Subject: [PATCH 30/45] add c files for dist --- ccd/models/lasso.c | 9263 ++++++++++++++++++ ccd/models/robust_fit.c | 13718 +++++++++++++++++++++++++++ ccd/models/tmask.c | 8693 +++++++++++++++++ ccd/procedures.c | 19323 ++++++++++++++++++++++++++++++++++++++ 4 files changed, 50997 insertions(+) create mode 100644 ccd/models/lasso.c create mode 100644 ccd/models/robust_fit.c create mode 100644 ccd/models/tmask.c create mode 100644 ccd/procedures.c diff --git a/ccd/models/lasso.c b/ccd/models/lasso.c new file mode 100644 index 0000000..d71fa68 --- /dev/null +++ b/ccd/models/lasso.c @@ -0,0 +1,9263 @@ +/* Generated by Cython 0.26 */ + +/* BEGIN: Cython Metadata +{ + "distutils": { + "depends": [ + "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h", + "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h" + ], + "include_dirs": [ + "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include" + ], + "name": "ccd.models.lasso", + "sources": [ + "ccd/models/lasso.pyx" + ] + }, + "module_name": "ccd.models.lasso" +} +END: Cython Metadata */ + +#define PY_SSIZE_T_CLEAN +#include "Python.h" +#ifndef Py_PYTHON_H + #error Python headers needed to compile C extensions, please install development version of Python. +#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) + #error Cython requires Python 2.6+ or Python 3.2+. +#else +#define CYTHON_ABI "0_26" +#include +#ifndef offsetof + #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) +#endif +#if !defined(WIN32) && !defined(MS_WINDOWS) + #ifndef __stdcall + #define __stdcall + #endif + #ifndef __cdecl + #define __cdecl + #endif + #ifndef __fastcall + #define __fastcall + #endif +#endif +#ifndef DL_IMPORT + #define DL_IMPORT(t) t +#endif +#ifndef DL_EXPORT + #define DL_EXPORT(t) t +#endif +#define __PYX_COMMA , +#ifndef HAVE_LONG_LONG + #if PY_VERSION_HEX >= 0x03030000 || (PY_MAJOR_VERSION == 2 && PY_VERSION_HEX >= 0x02070000) + #define HAVE_LONG_LONG + #endif +#endif +#ifndef PY_LONG_LONG + #define PY_LONG_LONG LONG_LONG +#endif +#ifndef Py_HUGE_VAL + #define Py_HUGE_VAL HUGE_VAL +#endif +#ifdef PYPY_VERSION + #define CYTHON_COMPILING_IN_PYPY 1 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #undef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 0 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #undef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #undef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 1 + #undef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 0 + #undef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 0 + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 +#elif defined(PYSTON_VERSION) + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 1 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 +#else + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 1 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #if PY_MAJOR_VERSION < 3 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #elif !defined(CYTHON_USE_ASYNC_SLOTS) + #define CYTHON_USE_ASYNC_SLOTS 1 + #endif + #if PY_VERSION_HEX < 0x02070000 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #elif !defined(CYTHON_USE_PYLONG_INTERNALS) + #define CYTHON_USE_PYLONG_INTERNALS 1 + #endif + #ifndef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 1 + #endif + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #if PY_VERSION_HEX < 0x030300F0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #elif !defined(CYTHON_USE_UNICODE_WRITER) + #define CYTHON_USE_UNICODE_WRITER 1 + #endif + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #ifndef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 1 + #endif + #ifndef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 1 + #endif +#endif +#if !defined(CYTHON_FAST_PYCCALL) +#define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1) +#endif +#if CYTHON_USE_PYLONG_INTERNALS + #include "longintrepr.h" + #undef SHIFT + #undef BASE + #undef MASK +#endif +#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag) + #define Py_OptimizeFlag 0 +#endif +#define __PYX_BUILD_PY_SSIZE_T "n" +#define CYTHON_FORMAT_SSIZE_T "z" +#if PY_MAJOR_VERSION < 3 + #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ + PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) + #define __Pyx_DefaultClassType PyClass_Type +#else + #define __Pyx_BUILTIN_MODULE_NAME "builtins" + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ + PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) + #define __Pyx_DefaultClassType PyType_Type +#endif +#ifndef Py_TPFLAGS_CHECKTYPES + #define Py_TPFLAGS_CHECKTYPES 0 +#endif +#ifndef Py_TPFLAGS_HAVE_INDEX + #define Py_TPFLAGS_HAVE_INDEX 0 +#endif +#ifndef Py_TPFLAGS_HAVE_NEWBUFFER + #define Py_TPFLAGS_HAVE_NEWBUFFER 0 +#endif +#ifndef Py_TPFLAGS_HAVE_FINALIZE + #define Py_TPFLAGS_HAVE_FINALIZE 0 +#endif +#if PY_VERSION_HEX < 0x030700A0 || !defined(METH_FASTCALL) + #ifndef METH_FASTCALL + #define METH_FASTCALL 0x80 + #endif + typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, Py_ssize_t nargs); + typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject **args, + Py_ssize_t nargs, PyObject *kwnames); +#else + #define __Pyx_PyCFunctionFast _PyCFunctionFast + #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords +#endif +#if CYTHON_FAST_PYCCALL +#define __Pyx_PyFastCFunction_Check(func)\ + ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))))) +#else +#define __Pyx_PyFastCFunction_Check(func) 0 +#endif +#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) + #define CYTHON_PEP393_ENABLED 1 + #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\ + 0 : _PyUnicode_Ready((PyObject *)(op))) + #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) + #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u) + #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u) + #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) + #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u))) +#else + #define CYTHON_PEP393_ENABLED 0 + #define PyUnicode_1BYTE_KIND 1 + #define PyUnicode_2BYTE_KIND 2 + #define PyUnicode_4BYTE_KIND 4 + #define __Pyx_PyUnicode_READY(op) (0) + #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) + #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111) + #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE)) + #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) + #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u)) +#endif +#if CYTHON_COMPILING_IN_PYPY + #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) + #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) +#else + #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) + #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ + PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains) + #define PyUnicode_Contains(u, s) PySequence_Contains(u, s) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check) + #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format) + #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc) + #define PyObject_Malloc(s) PyMem_Malloc(s) + #define PyObject_Free(p) PyMem_Free(p) + #define PyObject_Realloc(p) PyMem_Realloc(p) +#endif +#if CYTHON_COMPILING_IN_PYSTON + #define __Pyx_PyCode_HasFreeVars(co) PyCode_HasFreeVars(co) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno) +#else + #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno) +#endif +#define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) +#define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) +#else + #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) +#endif +#if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII) + #define PyObject_ASCII(o) PyObject_Repr(o) +#endif +#if PY_MAJOR_VERSION >= 3 + #define PyBaseString_Type PyUnicode_Type + #define PyStringObject PyUnicodeObject + #define PyString_Type PyUnicode_Type + #define PyString_Check PyUnicode_Check + #define PyString_CheckExact PyUnicode_CheckExact +#endif +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) + #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj) +#else + #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj)) + #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) +#endif +#ifndef PySet_CheckExact + #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) +#endif +#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) +#define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception) +#if PY_MAJOR_VERSION >= 3 + #define PyIntObject PyLongObject + #define PyInt_Type PyLong_Type + #define PyInt_Check(op) PyLong_Check(op) + #define PyInt_CheckExact(op) PyLong_CheckExact(op) + #define PyInt_FromString PyLong_FromString + #define PyInt_FromUnicode PyLong_FromUnicode + #define PyInt_FromLong PyLong_FromLong + #define PyInt_FromSize_t PyLong_FromSize_t + #define PyInt_FromSsize_t PyLong_FromSsize_t + #define PyInt_AsLong PyLong_AsLong + #define PyInt_AS_LONG PyLong_AS_LONG + #define PyInt_AsSsize_t PyLong_AsSsize_t + #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask + #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask + #define PyNumber_Int PyNumber_Long +#endif +#if PY_MAJOR_VERSION >= 3 + #define PyBoolObject PyLongObject +#endif +#if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY + #ifndef PyUnicode_InternFromString + #define PyUnicode_InternFromString(s) PyUnicode_FromString(s) + #endif +#endif +#if PY_VERSION_HEX < 0x030200A4 + typedef long Py_hash_t; + #define __Pyx_PyInt_FromHash_t PyInt_FromLong + #define __Pyx_PyInt_AsHash_t PyInt_AsLong +#else + #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t + #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t +#endif +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func)) +#else + #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) +#endif +#ifndef __has_attribute + #define __has_attribute(x) 0 +#endif +#ifndef __has_cpp_attribute + #define __has_cpp_attribute(x) 0 +#endif +#if CYTHON_USE_ASYNC_SLOTS + #if PY_VERSION_HEX >= 0x030500B1 + #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods + #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async) + #else + typedef struct { + unaryfunc am_await; + unaryfunc am_aiter; + unaryfunc am_anext; + } __Pyx_PyAsyncMethodsStruct; + #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved)) + #endif +#else + #define __Pyx_PyType_AsAsync(obj) NULL +#endif +#ifndef CYTHON_RESTRICT + #if defined(__GNUC__) + #define CYTHON_RESTRICT __restrict__ + #elif defined(_MSC_VER) && _MSC_VER >= 1400 + #define CYTHON_RESTRICT __restrict + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_RESTRICT restrict + #else + #define CYTHON_RESTRICT + #endif +#endif +#ifndef CYTHON_UNUSED +# if defined(__GNUC__) +# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +#endif +#ifndef CYTHON_MAYBE_UNUSED_VAR +# if defined(__cplusplus) + template void CYTHON_MAYBE_UNUSED_VAR( const T& ) { } +# else +# define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x) +# endif +#endif +#ifndef CYTHON_NCP_UNUSED +# if CYTHON_COMPILING_IN_CPYTHON +# define CYTHON_NCP_UNUSED +# else +# define CYTHON_NCP_UNUSED CYTHON_UNUSED +# endif +#endif +#define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) +#ifdef _MSC_VER + #ifndef _MSC_STDINT_H_ + #if _MSC_VER < 1300 + typedef unsigned char uint8_t; + typedef unsigned int uint32_t; + #else + typedef unsigned __int8 uint8_t; + typedef unsigned __int32 uint32_t; + #endif + #endif +#else + #include +#endif +#ifndef CYTHON_FALLTHROUGH + #ifdef __cplusplus + #if __has_cpp_attribute(fallthrough) + #define CYTHON_FALLTHROUGH [[fallthrough]] + #elif __has_cpp_attribute(clang::fallthrough) + #define CYTHON_FALLTHROUGH [[clang::fallthrough]] + #endif + #endif + #ifndef CYTHON_FALLTHROUGH + #if __has_attribute(fallthrough) || (defined(__GNUC__) && defined(__attribute__)) + #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) + #else + #define CYTHON_FALLTHROUGH + #endif + #endif +#endif + +#ifndef CYTHON_INLINE + #if defined(__clang__) + #define CYTHON_INLINE __inline__ __attribute__ ((__unused__)) + #elif defined(__GNUC__) + #define CYTHON_INLINE __inline__ + #elif defined(_MSC_VER) + #define CYTHON_INLINE __inline + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_INLINE inline + #else + #define CYTHON_INLINE + #endif +#endif + +#if defined(WIN32) || defined(MS_WINDOWS) + #define _USE_MATH_DEFINES +#endif +#include +#ifdef NAN +#define __PYX_NAN() ((float) NAN) +#else +static CYTHON_INLINE float __PYX_NAN() { + float value; + memset(&value, 0xFF, sizeof(value)); + return value; +} +#endif +#if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL) +#define __Pyx_truncl trunc +#else +#define __Pyx_truncl truncl +#endif + + +#define __PYX_ERR(f_index, lineno, Ln_error) \ +{ \ + __pyx_filename = __pyx_f[f_index]; __pyx_lineno = lineno; __pyx_clineno = __LINE__; goto Ln_error; \ +} + +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) +#else + #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) +#endif + +#ifndef __PYX_EXTERN_C + #ifdef __cplusplus + #define __PYX_EXTERN_C extern "C" + #else + #define __PYX_EXTERN_C extern + #endif +#endif + +#define __PYX_HAVE__ccd__models__lasso +#define __PYX_HAVE_API__ccd__models__lasso +#include +#include +#include +#include "numpy/arrayobject.h" +#include "numpy/ufuncobject.h" +#include "pythread.h" +#ifdef _OPENMP +#include +#endif /* _OPENMP */ + +#ifdef PYREX_WITHOUT_ASSERTIONS +#define CYTHON_WITHOUT_ASSERTIONS +#endif + +typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding; + const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; + +#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 +#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0 +#define __PYX_DEFAULT_STRING_ENCODING "" +#define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString +#define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize +#define __Pyx_uchar_cast(c) ((unsigned char)c) +#define __Pyx_long_cast(x) ((long)x) +#define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\ + (sizeof(type) < sizeof(Py_ssize_t)) ||\ + (sizeof(type) > sizeof(Py_ssize_t) &&\ + likely(v < (type)PY_SSIZE_T_MAX ||\ + v == (type)PY_SSIZE_T_MAX) &&\ + (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\ + v == (type)PY_SSIZE_T_MIN))) ||\ + (sizeof(type) == sizeof(Py_ssize_t) &&\ + (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\ + v == (type)PY_SSIZE_T_MAX))) ) +#if defined (__cplusplus) && __cplusplus >= 201103L + #include + #define __Pyx_sst_abs(value) std::abs(value) +#elif SIZEOF_INT >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) abs(value) +#elif SIZEOF_LONG >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) labs(value) +#elif defined (_MSC_VER) && defined (_M_X64) + #define __Pyx_sst_abs(value) _abs64(value) +#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define __Pyx_sst_abs(value) llabs(value) +#elif defined (__GNUC__) + #define __Pyx_sst_abs(value) __builtin_llabs(value) +#else + #define __Pyx_sst_abs(value) ((value<0) ? -value : value) +#endif +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); +#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) +#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) +#define __Pyx_PyBytes_FromString PyBytes_FromString +#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize +static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); +#if PY_MAJOR_VERSION < 3 + #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString + #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize +#else + #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString + #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize +#endif +#define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) +#define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) +#define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) +#define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s) +#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s) +#if PY_MAJOR_VERSION < 3 +static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) +{ + const Py_UNICODE *u_end = u; + while (*u_end++) ; + return (size_t)(u_end - u - 1); +} +#else +#define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen +#endif +#define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) +#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode +#define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode +#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj) +#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None) +#define __Pyx_PyBool_FromLong(b) ((b) ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False)) +static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); +static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x); +static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); +static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); +#if CYTHON_ASSUME_SAFE_MACROS +#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) +#else +#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) +#endif +#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) +#if PY_MAJOR_VERSION >= 3 +#define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x)) +#else +#define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x)) +#endif +#define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x)) +#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII +static int __Pyx_sys_getdefaultencoding_not_ascii; +static int __Pyx_init_sys_getdefaultencoding_params(void) { + PyObject* sys; + PyObject* default_encoding = NULL; + PyObject* ascii_chars_u = NULL; + PyObject* ascii_chars_b = NULL; + const char* default_encoding_c; + sys = PyImport_ImportModule("sys"); + if (!sys) goto bad; + default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL); + Py_DECREF(sys); + if (!default_encoding) goto bad; + default_encoding_c = PyBytes_AsString(default_encoding); + if (!default_encoding_c) goto bad; + if (strcmp(default_encoding_c, "ascii") == 0) { + __Pyx_sys_getdefaultencoding_not_ascii = 0; + } else { + char ascii_chars[128]; + int c; + for (c = 0; c < 128; c++) { + ascii_chars[c] = c; + } + __Pyx_sys_getdefaultencoding_not_ascii = 1; + ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); + if (!ascii_chars_u) goto bad; + ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); + if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { + PyErr_Format( + PyExc_ValueError, + "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", + default_encoding_c); + goto bad; + } + Py_DECREF(ascii_chars_u); + Py_DECREF(ascii_chars_b); + } + Py_DECREF(default_encoding); + return 0; +bad: + Py_XDECREF(default_encoding); + Py_XDECREF(ascii_chars_u); + Py_XDECREF(ascii_chars_b); + return -1; +} +#endif +#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 +#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) +#else +#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) +#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT +static char* __PYX_DEFAULT_STRING_ENCODING; +static int __Pyx_init_sys_getdefaultencoding_params(void) { + PyObject* sys; + PyObject* default_encoding = NULL; + char* default_encoding_c; + sys = PyImport_ImportModule("sys"); + if (!sys) goto bad; + default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); + Py_DECREF(sys); + if (!default_encoding) goto bad; + default_encoding_c = PyBytes_AsString(default_encoding); + if (!default_encoding_c) goto bad; + __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c)); + if (!__PYX_DEFAULT_STRING_ENCODING) goto bad; + strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); + Py_DECREF(default_encoding); + return 0; +bad: + Py_XDECREF(default_encoding); + return -1; +} +#endif +#endif + + +/* Test for GCC > 2.95 */ +#if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))) + #define likely(x) __builtin_expect(!!(x), 1) + #define unlikely(x) __builtin_expect(!!(x), 0) +#else /* !__GNUC__ or GCC < 2.95 */ + #define likely(x) (x) + #define unlikely(x) (x) +#endif /* __GNUC__ */ +static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } + +static PyObject *__pyx_m; +static PyObject *__pyx_d; +static PyObject *__pyx_b; +static PyObject *__pyx_cython_runtime; +static PyObject *__pyx_empty_tuple; +static PyObject *__pyx_empty_bytes; +static PyObject *__pyx_empty_unicode; +static int __pyx_lineno; +static int __pyx_clineno = 0; +static const char * __pyx_cfilenm= __FILE__; +static const char *__pyx_filename; + +/* Header.proto */ +#if !defined(CYTHON_CCOMPLEX) + #if defined(__cplusplus) + #define CYTHON_CCOMPLEX 1 + #elif defined(_Complex_I) + #define CYTHON_CCOMPLEX 1 + #else + #define CYTHON_CCOMPLEX 0 + #endif +#endif +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + #include + #else + #include + #endif +#endif +#if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__) + #undef _Complex_I + #define _Complex_I 1.0fj +#endif + + +static const char *__pyx_f[] = { + "ccd/models/lasso.pyx", + "__init__.pxd", + "type.pxd", + "bool.pxd", + "complex.pxd", +}; +/* BufferFormatStructs.proto */ +#define IS_UNSIGNED(type) (((type) -1) > 0) +struct __Pyx_StructField_; +#define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0) +typedef struct { + const char* name; + struct __Pyx_StructField_* fields; + size_t size; + size_t arraysize[8]; + int ndim; + char typegroup; + char is_unsigned; + int flags; +} __Pyx_TypeInfo; +typedef struct __Pyx_StructField_ { + __Pyx_TypeInfo* type; + const char* name; + size_t offset; +} __Pyx_StructField; +typedef struct { + __Pyx_StructField* field; + size_t parent_offset; +} __Pyx_BufFmt_StackElem; +typedef struct { + __Pyx_StructField root; + __Pyx_BufFmt_StackElem* head; + size_t fmt_offset; + size_t new_count, enc_count; + size_t struct_alignment; + int is_complex; + char enc_type; + char new_packmode; + char enc_packmode; + char is_valid_array; +} __Pyx_BufFmt_Context; + + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":725 + * # in Cython to enable them only on the right systems. + * + * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t + */ +typedef npy_int8 __pyx_t_5numpy_int8_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":726 + * + * ctypedef npy_int8 int8_t + * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< + * ctypedef npy_int32 int32_t + * ctypedef npy_int64 int64_t + */ +typedef npy_int16 __pyx_t_5numpy_int16_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":727 + * ctypedef npy_int8 int8_t + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< + * ctypedef npy_int64 int64_t + * #ctypedef npy_int96 int96_t + */ +typedef npy_int32 __pyx_t_5numpy_int32_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":728 + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t + * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< + * #ctypedef npy_int96 int96_t + * #ctypedef npy_int128 int128_t + */ +typedef npy_int64 __pyx_t_5numpy_int64_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":732 + * #ctypedef npy_int128 int128_t + * + * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< + * ctypedef npy_uint16 uint16_t + * ctypedef npy_uint32 uint32_t + */ +typedef npy_uint8 __pyx_t_5numpy_uint8_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":733 + * + * ctypedef npy_uint8 uint8_t + * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< + * ctypedef npy_uint32 uint32_t + * ctypedef npy_uint64 uint64_t + */ +typedef npy_uint16 __pyx_t_5numpy_uint16_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":734 + * ctypedef npy_uint8 uint8_t + * ctypedef npy_uint16 uint16_t + * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< + * ctypedef npy_uint64 uint64_t + * #ctypedef npy_uint96 uint96_t + */ +typedef npy_uint32 __pyx_t_5numpy_uint32_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":735 + * ctypedef npy_uint16 uint16_t + * ctypedef npy_uint32 uint32_t + * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< + * #ctypedef npy_uint96 uint96_t + * #ctypedef npy_uint128 uint128_t + */ +typedef npy_uint64 __pyx_t_5numpy_uint64_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":739 + * #ctypedef npy_uint128 uint128_t + * + * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< + * ctypedef npy_float64 float64_t + * #ctypedef npy_float80 float80_t + */ +typedef npy_float32 __pyx_t_5numpy_float32_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":740 + * + * ctypedef npy_float32 float32_t + * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< + * #ctypedef npy_float80 float80_t + * #ctypedef npy_float128 float128_t + */ +typedef npy_float64 __pyx_t_5numpy_float64_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":749 + * # The int types are mapped a bit surprising -- + * # numpy.int corresponds to 'l' and numpy.long to 'q' + * ctypedef npy_long int_t # <<<<<<<<<<<<<< + * ctypedef npy_longlong long_t + * ctypedef npy_longlong longlong_t + */ +typedef npy_long __pyx_t_5numpy_int_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":750 + * # numpy.int corresponds to 'l' and numpy.long to 'q' + * ctypedef npy_long int_t + * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< + * ctypedef npy_longlong longlong_t + * + */ +typedef npy_longlong __pyx_t_5numpy_long_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":751 + * ctypedef npy_long int_t + * ctypedef npy_longlong long_t + * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< + * + * ctypedef npy_ulong uint_t + */ +typedef npy_longlong __pyx_t_5numpy_longlong_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":753 + * ctypedef npy_longlong longlong_t + * + * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<< + * ctypedef npy_ulonglong ulong_t + * ctypedef npy_ulonglong ulonglong_t + */ +typedef npy_ulong __pyx_t_5numpy_uint_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":754 + * + * ctypedef npy_ulong uint_t + * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<< + * ctypedef npy_ulonglong ulonglong_t + * + */ +typedef npy_ulonglong __pyx_t_5numpy_ulong_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":755 + * ctypedef npy_ulong uint_t + * ctypedef npy_ulonglong ulong_t + * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<< + * + * ctypedef npy_intp intp_t + */ +typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":757 + * ctypedef npy_ulonglong ulonglong_t + * + * ctypedef npy_intp intp_t # <<<<<<<<<<<<<< + * ctypedef npy_uintp uintp_t + * + */ +typedef npy_intp __pyx_t_5numpy_intp_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":758 + * + * ctypedef npy_intp intp_t + * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<< + * + * ctypedef npy_double float_t + */ +typedef npy_uintp __pyx_t_5numpy_uintp_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":760 + * ctypedef npy_uintp uintp_t + * + * ctypedef npy_double float_t # <<<<<<<<<<<<<< + * ctypedef npy_double double_t + * ctypedef npy_longdouble longdouble_t + */ +typedef npy_double __pyx_t_5numpy_float_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":761 + * + * ctypedef npy_double float_t + * ctypedef npy_double double_t # <<<<<<<<<<<<<< + * ctypedef npy_longdouble longdouble_t + * + */ +typedef npy_double __pyx_t_5numpy_double_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":762 + * ctypedef npy_double float_t + * ctypedef npy_double double_t + * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<< + * + * ctypedef npy_cfloat cfloat_t + */ +typedef npy_longdouble __pyx_t_5numpy_longdouble_t; + +/* "ccd/models/lasso.pyx":10 + * from ccd.math_utils import calc_rmse + * + * ctypedef np.float64_t STYPE_t # <<<<<<<<<<<<<< + * ctypedef float FTYPE_t + * ctypedef int ITYPE_t + */ +typedef __pyx_t_5numpy_float64_t __pyx_t_3ccd_6models_5lasso_STYPE_t; + +/* "ccd/models/lasso.pyx":11 + * + * ctypedef np.float64_t STYPE_t + * ctypedef float FTYPE_t # <<<<<<<<<<<<<< + * ctypedef int ITYPE_t + * ctypedef bool BTYPE_t + */ +typedef float __pyx_t_3ccd_6models_5lasso_FTYPE_t; + +/* "ccd/models/lasso.pyx":12 + * ctypedef np.float64_t STYPE_t + * ctypedef float FTYPE_t + * ctypedef int ITYPE_t # <<<<<<<<<<<<<< + * ctypedef bool BTYPE_t + * ctypedef np.long_t LTYPE_t + */ +typedef int __pyx_t_3ccd_6models_5lasso_ITYPE_t; + +/* "ccd/models/lasso.pyx":14 + * ctypedef int ITYPE_t + * ctypedef bool BTYPE_t + * ctypedef np.long_t LTYPE_t # <<<<<<<<<<<<<< + * + * + */ +typedef __pyx_t_5numpy_long_t __pyx_t_3ccd_6models_5lasso_LTYPE_t; +/* Declarations.proto */ +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + typedef ::std::complex< float > __pyx_t_float_complex; + #else + typedef float _Complex __pyx_t_float_complex; + #endif +#else + typedef struct { float real, imag; } __pyx_t_float_complex; +#endif +static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float); + +/* Declarations.proto */ +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + typedef ::std::complex< double > __pyx_t_double_complex; + #else + typedef double _Complex __pyx_t_double_complex; + #endif +#else + typedef struct { double real, imag; } __pyx_t_double_complex; +#endif +static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double); + + +/*--- Type declarations ---*/ + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":764 + * ctypedef npy_longdouble longdouble_t + * + * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<< + * ctypedef npy_cdouble cdouble_t + * ctypedef npy_clongdouble clongdouble_t + */ +typedef npy_cfloat __pyx_t_5numpy_cfloat_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":765 + * + * ctypedef npy_cfloat cfloat_t + * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<< + * ctypedef npy_clongdouble clongdouble_t + * + */ +typedef npy_cdouble __pyx_t_5numpy_cdouble_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":766 + * ctypedef npy_cfloat cfloat_t + * ctypedef npy_cdouble cdouble_t + * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<< + * + * ctypedef npy_cdouble complex_t + */ +typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":768 + * ctypedef npy_clongdouble clongdouble_t + * + * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<< + * + * cdef inline object PyArray_MultiIterNew1(a): + */ +typedef npy_cdouble __pyx_t_5numpy_complex_t; + +/* "ccd/models/lasso.pyx":13 + * ctypedef float FTYPE_t + * ctypedef int ITYPE_t + * ctypedef bool BTYPE_t # <<<<<<<<<<<<<< + * ctypedef np.long_t LTYPE_t + * + */ +typedef PyBoolObject *__pyx_t_3ccd_6models_5lasso_BTYPE_t; 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}} while(0) + #define __Pyx_XDECREF(r) do { if((r) != NULL) {__Pyx_DECREF(r); }} while(0) + #define __Pyx_XGOTREF(r) do { if((r) != NULL) {__Pyx_GOTREF(r); }} while(0) + #define __Pyx_XGIVEREF(r) do { if((r) != NULL) {__Pyx_GIVEREF(r);}} while(0) +#else + #define __Pyx_RefNannyDeclarations + #define __Pyx_RefNannySetupContext(name, acquire_gil) + #define __Pyx_RefNannyFinishContext() + #define __Pyx_INCREF(r) Py_INCREF(r) + #define __Pyx_DECREF(r) Py_DECREF(r) + #define __Pyx_GOTREF(r) + #define __Pyx_GIVEREF(r) + #define __Pyx_XINCREF(r) Py_XINCREF(r) + #define __Pyx_XDECREF(r) Py_XDECREF(r) + #define __Pyx_XGOTREF(r) + #define __Pyx_XGIVEREF(r) +#endif +#define __Pyx_XDECREF_SET(r, v) do {\ + PyObject *tmp = (PyObject *) r;\ + r = v; __Pyx_XDECREF(tmp);\ + } while (0) +#define __Pyx_DECREF_SET(r, v) do {\ + PyObject *tmp = (PyObject *) r;\ + r = v; __Pyx_DECREF(tmp);\ + } while (0) +#define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0) +#define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0) + +/* Profile.proto */ +#ifndef CYTHON_PROFILE +#if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_PYSTON + #define CYTHON_PROFILE 0 +#else + #define CYTHON_PROFILE 1 +#endif +#endif +#ifndef CYTHON_TRACE_NOGIL + #define CYTHON_TRACE_NOGIL 0 +#else + #if CYTHON_TRACE_NOGIL && !defined(CYTHON_TRACE) + #define CYTHON_TRACE 1 + #endif +#endif +#ifndef CYTHON_TRACE + #define CYTHON_TRACE 0 +#endif +#if CYTHON_TRACE + #undef CYTHON_PROFILE_REUSE_FRAME +#endif +#ifndef CYTHON_PROFILE_REUSE_FRAME + #define CYTHON_PROFILE_REUSE_FRAME 0 +#endif +#if CYTHON_PROFILE || CYTHON_TRACE + #include "compile.h" + #include "frameobject.h" + #include "traceback.h" + #if CYTHON_PROFILE_REUSE_FRAME + #define CYTHON_FRAME_MODIFIER static + #define CYTHON_FRAME_DEL(frame) + #else + #define CYTHON_FRAME_MODIFIER + #define CYTHON_FRAME_DEL(frame) Py_CLEAR(frame) + #endif + #define __Pyx_TraceDeclarations\ + static PyCodeObject *__pyx_frame_code = NULL;\ + CYTHON_FRAME_MODIFIER PyFrameObject *__pyx_frame = NULL;\ + int __Pyx_use_tracing = 0; + #define __Pyx_TraceFrameInit(codeobj)\ + if (codeobj) __pyx_frame_code = (PyCodeObject*) codeobj; + #ifdef WITH_THREAD + #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ + if (nogil) {\ + if (CYTHON_TRACE_NOGIL) {\ + PyThreadState *tstate;\ + PyGILState_STATE state = PyGILState_Ensure();\ + tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing) && !tstate->tracing &&\ + (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ + __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, funcname, srcfile, firstlineno);\ + }\ + PyGILState_Release(state);\ + if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ + }\ + } else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing) && !tstate->tracing &&\ + (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ + __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, funcname, srcfile, firstlineno);\ + if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ + }\ + } + #else + #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ + { PyThreadState* tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing) && !tstate->tracing &&\ + (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ + __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, funcname, srcfile, firstlineno);\ + if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ + }\ + } + #endif + #define __Pyx_TraceException()\ + if (likely(!__Pyx_use_tracing)); else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (tstate->use_tracing &&\ + (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ + tstate->tracing++;\ + tstate->use_tracing = 0;\ + PyObject *exc_info = __Pyx_GetExceptionTuple(tstate);\ + if (exc_info) {\ + if (CYTHON_TRACE && tstate->c_tracefunc)\ + tstate->c_tracefunc(\ + tstate->c_traceobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ + tstate->c_profilefunc(\ + tstate->c_profileobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ + Py_DECREF(exc_info);\ + }\ + tstate->use_tracing = 1;\ + tstate->tracing--;\ + }\ + } + static void __Pyx_call_return_trace_func(PyThreadState *tstate, PyFrameObject *frame, PyObject *result) { + PyObject *type, *value, *traceback; + PyErr_Fetch(&type, &value, &traceback); + tstate->tracing++; + tstate->use_tracing = 0; + if (CYTHON_TRACE && tstate->c_tracefunc) + tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_RETURN, result); + if (tstate->c_profilefunc) + tstate->c_profilefunc(tstate->c_profileobj, frame, PyTrace_RETURN, result); + CYTHON_FRAME_DEL(frame); + tstate->use_tracing = 1; + tstate->tracing--; + PyErr_Restore(type, value, traceback); + } + #ifdef WITH_THREAD + #define __Pyx_TraceReturn(result, nogil)\ + if (likely(!__Pyx_use_tracing)); else {\ + if (nogil) {\ + if (CYTHON_TRACE_NOGIL) {\ + PyThreadState *tstate;\ + PyGILState_STATE state = PyGILState_Ensure();\ + tstate = PyThreadState_GET();\ + if (tstate->use_tracing) {\ + __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ + }\ + PyGILState_Release(state);\ + }\ + } else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (tstate->use_tracing) {\ + __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ + }\ + }\ + } + #else + #define __Pyx_TraceReturn(result, nogil)\ + if (likely(!__Pyx_use_tracing)); else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (tstate->use_tracing) {\ + __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ + }\ + } + #endif + static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno); + static int __Pyx_TraceSetupAndCall(PyCodeObject** code, PyFrameObject** frame, const char *funcname, const char *srcfile, int firstlineno); +#else + #define __Pyx_TraceDeclarations + #define __Pyx_TraceFrameInit(codeobj) + #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if ((1)); else goto_error; + #define __Pyx_TraceException() + #define __Pyx_TraceReturn(result, nogil) +#endif +#if CYTHON_TRACE + static int __Pyx_call_line_trace_func(PyThreadState *tstate, PyFrameObject *frame, int lineno) { + int ret; + PyObject *type, *value, *traceback; + PyErr_Fetch(&type, &value, &traceback); + __Pyx_PyFrame_SetLineNumber(frame, lineno); + tstate->tracing++; + tstate->use_tracing = 0; + ret = tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_LINE, NULL); + tstate->use_tracing = 1; + tstate->tracing--; + if (likely(!ret)) { + PyErr_Restore(type, value, traceback); + } else { + Py_XDECREF(type); + Py_XDECREF(value); + Py_XDECREF(traceback); + } + return ret; + } + #ifdef WITH_THREAD + #define __Pyx_TraceLine(lineno, nogil, goto_error)\ + if (likely(!__Pyx_use_tracing)); else {\ + if (nogil) {\ + if (CYTHON_TRACE_NOGIL) {\ + int ret = 0;\ + PyThreadState *tstate;\ + PyGILState_STATE state = PyGILState_Ensure();\ + tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing && tstate->c_tracefunc)) {\ + ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ + }\ + PyGILState_Release(state);\ + if (unlikely(ret)) goto_error;\ + }\ + } else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing && tstate->c_tracefunc)) {\ + int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ + if (unlikely(ret)) goto_error;\ + }\ + }\ + } + #else + #define __Pyx_TraceLine(lineno, nogil, goto_error)\ + if (likely(!__Pyx_use_tracing)); else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing && tstate->c_tracefunc)) {\ + int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ + if (unlikely(ret)) goto_error;\ + }\ + } + #endif +#else + #define __Pyx_TraceLine(lineno, nogil, goto_error) if ((1)); else goto_error; +#endif + +/* BufferFormatCheck.proto */ +static CYTHON_INLINE int __Pyx_GetBufferAndValidate(Py_buffer* buf, PyObject* obj, + __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack); +static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info); +static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts); +static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, + __Pyx_BufFmt_StackElem* stack, + __Pyx_TypeInfo* type); + +/* PyObjectGetAttrStr.proto */ +#if CYTHON_USE_TYPE_SLOTS +static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { + PyTypeObject* tp = Py_TYPE(obj); + if (likely(tp->tp_getattro)) + return tp->tp_getattro(obj, attr_name); +#if PY_MAJOR_VERSION < 3 + if (likely(tp->tp_getattr)) + return tp->tp_getattr(obj, PyString_AS_STRING(attr_name)); +#endif + return PyObject_GetAttr(obj, attr_name); +} +#else +#define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n) +#endif + +/* GetBuiltinName.proto */ +static PyObject *__Pyx_GetBuiltinName(PyObject *name); + +/* GetModuleGlobalName.proto */ +static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name); + +/* PyObjectCall.proto */ +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw); +#else +#define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) +#endif + +/* PyCFunctionFastCall.proto */ +#if CYTHON_FAST_PYCCALL +static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs); +#else +#define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL) +#endif + +/* PyFunctionFastCall.proto */ +#if CYTHON_FAST_PYCALL +#define __Pyx_PyFunction_FastCall(func, args, nargs)\ + __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL) +#if 1 || PY_VERSION_HEX < 0x030600B1 +static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs); +#else +#define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs) +#endif +#endif + +/* PyObjectCallMethO.proto */ +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); +#endif + +/* PyObjectCallOneArg.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); + +/* ExtTypeTest.proto */ +static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); + +/* PyThreadStateGet.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate; +#define __Pyx_PyThreadState_assign __pyx_tstate = PyThreadState_GET(); +#else +#define __Pyx_PyThreadState_declare +#define __Pyx_PyThreadState_assign +#endif + +/* PyErrFetchRestore.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else +#define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) +#endif + +/* RaiseTooManyValuesToUnpack.proto */ +static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); + +/* RaiseNeedMoreValuesToUnpack.proto */ +static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); + +/* IterFinish.proto */ +static CYTHON_INLINE int __Pyx_IterFinish(void); + +/* UnpackItemEndCheck.proto */ +static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); + +/* RaiseArgTupleInvalid.proto */ +static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, + Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); + +/* RaiseDoubleKeywords.proto */ +static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); + +/* ParseKeywords.proto */ +static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ + PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\ + const char* function_name); + +/* ArgTypeTest.proto */ +static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, + const char *name, int exact); + +/* RaiseException.proto */ +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); + +/* WriteUnraisableException.proto */ +static void __Pyx_WriteUnraisable(const char *name, int clineno, + int lineno, const char *filename, + int full_traceback, int nogil); + +/* DictGetItem.proto */ +#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY +static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { + PyObject *value; + value = PyDict_GetItemWithError(d, key); + if (unlikely(!value)) { + if (!PyErr_Occurred()) { + PyObject* args = PyTuple_Pack(1, key); + if (likely(args)) + PyErr_SetObject(PyExc_KeyError, args); + Py_XDECREF(args); + } + return NULL; + } + Py_INCREF(value); + return value; +} +#else + #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) +#endif + +/* RaiseNoneIterError.proto */ +static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); + +/* SaveResetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +#else +#define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb) +#define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb) +#endif + +/* PyErrExceptionMatches.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err) +static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err); +#else +#define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err) +#endif + +/* GetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb) +static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else +static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); +#endif + +/* Import.proto */ +static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); + +/* ImportFrom.proto */ +static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); + +/* CLineInTraceback.proto */ +static int __Pyx_CLineForTraceback(int c_line); + +/* CodeObjectCache.proto */ +typedef struct { + PyCodeObject* code_object; + int code_line; +} __Pyx_CodeObjectCacheEntry; +struct __Pyx_CodeObjectCache { + int count; + int max_count; + __Pyx_CodeObjectCacheEntry* entries; +}; +static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL}; +static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); +static PyCodeObject *__pyx_find_code_object(int code_line); +static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); + +/* AddTraceback.proto */ +static void __Pyx_AddTraceback(const char *funcname, int c_line, + int py_line, const char *filename); + +/* BufferStructDeclare.proto */ +typedef struct { + Py_ssize_t shape, strides, suboffsets; +} __Pyx_Buf_DimInfo; +typedef struct { + size_t refcount; + Py_buffer pybuffer; +} __Pyx_Buffer; +typedef struct { + __Pyx_Buffer *rcbuffer; + char *data; + __Pyx_Buf_DimInfo diminfo[8]; +} __Pyx_LocalBuf_ND; + +#if PY_MAJOR_VERSION < 3 + static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags); + static void __Pyx_ReleaseBuffer(Py_buffer *view); +#else + #define __Pyx_GetBuffer PyObject_GetBuffer + #define __Pyx_ReleaseBuffer PyBuffer_Release +#endif + + +/* None.proto */ +static Py_ssize_t __Pyx_zeros[] = {0, 0, 0, 0, 0, 0, 0, 0}; +static Py_ssize_t __Pyx_minusones[] = {-1, -1, -1, -1, -1, -1, -1, -1}; + +/* RealImag.proto */ +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + #define __Pyx_CREAL(z) ((z).real()) + #define __Pyx_CIMAG(z) ((z).imag()) + #else + #define __Pyx_CREAL(z) (__real__(z)) + #define __Pyx_CIMAG(z) (__imag__(z)) + #endif +#else + #define __Pyx_CREAL(z) ((z).real) + #define __Pyx_CIMAG(z) ((z).imag) +#endif +#if defined(__cplusplus) && CYTHON_CCOMPLEX\ + && (defined(_WIN32) || defined(__clang__) || (defined(__GNUC__) && (__GNUC__ >= 5 || __GNUC__ == 4 && __GNUC_MINOR__ >= 4 )) || __cplusplus >= 201103) + #define __Pyx_SET_CREAL(z,x) ((z).real(x)) + #define __Pyx_SET_CIMAG(z,y) ((z).imag(y)) +#else + #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x) + #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y) +#endif + +/* Arithmetic.proto */ +#if CYTHON_CCOMPLEX + #define __Pyx_c_eq_float(a, b) ((a)==(b)) + #define __Pyx_c_sum_float(a, b) ((a)+(b)) + #define __Pyx_c_diff_float(a, b) ((a)-(b)) + #define __Pyx_c_prod_float(a, b) ((a)*(b)) + #define __Pyx_c_quot_float(a, b) ((a)/(b)) + #define __Pyx_c_neg_float(a) (-(a)) + #ifdef __cplusplus + #define __Pyx_c_is_zero_float(z) ((z)==(float)0) + #define __Pyx_c_conj_float(z) (::std::conj(z)) + #if 1 + #define __Pyx_c_abs_float(z) (::std::abs(z)) + #define __Pyx_c_pow_float(a, b) (::std::pow(a, b)) + #endif + #else + #define __Pyx_c_is_zero_float(z) ((z)==0) + #define __Pyx_c_conj_float(z) (conjf(z)) + #if 1 + #define __Pyx_c_abs_float(z) (cabsf(z)) + #define __Pyx_c_pow_float(a, b) (cpowf(a, b)) + #endif + #endif +#else + static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex); + static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex); + #if 1 + static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex, __pyx_t_float_complex); + #endif +#endif + +/* Arithmetic.proto */ +#if CYTHON_CCOMPLEX + #define __Pyx_c_eq_double(a, b) ((a)==(b)) + #define __Pyx_c_sum_double(a, b) ((a)+(b)) + #define __Pyx_c_diff_double(a, b) ((a)-(b)) + #define __Pyx_c_prod_double(a, b) ((a)*(b)) + #define __Pyx_c_quot_double(a, b) ((a)/(b)) + #define __Pyx_c_neg_double(a) (-(a)) + #ifdef __cplusplus + #define __Pyx_c_is_zero_double(z) ((z)==(double)0) + #define __Pyx_c_conj_double(z) (::std::conj(z)) + #if 1 + #define __Pyx_c_abs_double(z) (::std::abs(z)) + #define __Pyx_c_pow_double(a, b) (::std::pow(a, b)) + #endif + #else + #define __Pyx_c_is_zero_double(z) ((z)==0) + #define __Pyx_c_conj_double(z) (conj(z)) + #if 1 + #define __Pyx_c_abs_double(z) (cabs(z)) + #define __Pyx_c_pow_double(a, b) (cpow(a, b)) + #endif + #endif +#else + static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex); + static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex); + #if 1 + static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex, __pyx_t_double_complex); + #endif +#endif + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value); + +/* CIntFromPy.proto */ +static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); + +/* CIntFromPy.proto */ +static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); + +/* CheckBinaryVersion.proto */ +static int __Pyx_check_binary_version(void); + +/* PyIdentifierFromString.proto */ +#if !defined(__Pyx_PyIdentifier_FromString) +#if PY_MAJOR_VERSION < 3 + #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s) +#else + #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s) +#endif +#endif + +/* ModuleImport.proto */ +static PyObject *__Pyx_ImportModule(const char *name); + +/* TypeImport.proto */ +static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict); + +/* InitStrings.proto */ +static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); + + +/* Module declarations from 'cpython.buffer' */ + +/* Module declarations from 'libc.string' */ + +/* Module declarations from 'libc.stdio' */ + +/* Module declarations from '__builtin__' */ + +/* Module declarations from 'cpython.type' */ +static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0; + +/* Module declarations from 'cpython.version' */ + +/* Module declarations from 'cpython.exc' */ + +/* Module declarations from 'cpython.module' */ + +/* Module declarations from 'cpython.mem' */ + +/* Module declarations from 'cpython.tuple' */ + +/* Module declarations from 'cpython.list' */ + +/* Module declarations from 'cpython.sequence' */ + +/* Module declarations from 'cpython.mapping' */ + +/* Module declarations from 'cpython.iterator' */ + +/* Module declarations from 'cpython.number' */ + +/* Module declarations from 'cpython.int' */ + +/* Module declarations from '__builtin__' */ + +/* Module declarations from 'cpython.bool' */ +static PyTypeObject *__pyx_ptype_7cpython_4bool_bool = 0; + +/* Module declarations from 'cpython.long' */ + +/* Module declarations from 'cpython.float' */ + +/* Module declarations from '__builtin__' */ + +/* Module declarations from 'cpython.complex' */ +static PyTypeObject *__pyx_ptype_7cpython_7complex_complex = 0; + +/* Module declarations from 'cpython.string' */ + +/* Module declarations from 'cpython.unicode' */ + +/* Module declarations from 'cpython.dict' */ + +/* Module declarations from 'cpython.instance' */ + +/* Module declarations from 'cpython.function' */ + +/* Module declarations from 'cpython.method' */ + +/* Module declarations from 'cpython.weakref' */ + +/* Module declarations from 'cpython.getargs' */ + +/* Module declarations from 'cpython.pythread' */ + +/* Module declarations from 'cpython.pystate' */ + +/* Module declarations from 'cpython.cobject' */ + +/* Module declarations from 'cpython.oldbuffer' */ + +/* Module declarations from 'cpython.set' */ + +/* Module declarations from 'cpython.bytes' */ + +/* Module declarations from 'cpython.pycapsule' */ + +/* Module declarations from 'cpython' */ + +/* Module declarations from 'cpython.object' */ + +/* Module declarations from 'cpython.ref' */ + +/* Module declarations from 'libc.stdlib' */ + +/* Module declarations from 'numpy' */ + +/* Module declarations from 'numpy' */ +static PyTypeObject *__pyx_ptype_5numpy_dtype = 0; +static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0; +static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0; +static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0; +static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0; +static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/ + +/* Module declarations from 'ccd.models.lasso' */ +static PyArrayObject *__pyx_f_3ccd_6models_5lasso_coefficient_matrix(PyArrayObject *, __pyx_t_3ccd_6models_5lasso_FTYPE_t, __pyx_t_3ccd_6models_5lasso_ITYPE_t); /*proto*/ +static PyObject *__pyx_f_3ccd_6models_5lasso_fitted_model(PyArrayObject *, PyArrayObject *, __pyx_t_3ccd_6models_5lasso_ITYPE_t, __pyx_t_3ccd_6models_5lasso_FTYPE_t, __pyx_t_3ccd_6models_5lasso_ITYPE_t, PyObject *, int __pyx_skip_dispatch); /*proto*/ +static PyObject *__pyx_f_3ccd_6models_5lasso_predict(PyObject *, PyArrayObject *, __pyx_t_3ccd_6models_5lasso_FTYPE_t, int __pyx_skip_dispatch); /*proto*/ +static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5lasso_LTYPE_t = { "LTYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_5lasso_LTYPE_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_3ccd_6models_5lasso_LTYPE_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_3ccd_6models_5lasso_LTYPE_t), 0 }; +static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5lasso_STYPE_t = { "STYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_5lasso_STYPE_t), { 0 }, 0, 'R', 0, 0 }; +#define __Pyx_MODULE_NAME "ccd.models.lasso" +int __pyx_module_is_main_ccd__models__lasso = 0; + +/* Implementation of 'ccd.models.lasso' */ +static PyObject *__pyx_builtin_ValueError; +static PyObject *__pyx_builtin_range; +static PyObject *__pyx_builtin_RuntimeError; +static PyObject *__pyx_builtin_ImportError; +static const char __pyx_k_F[] = "F"; +static const char __pyx_k_lm[] = "lm"; +static const char __pyx_k_np[] = "np"; +static const char __pyx_k_pi[] = "pi"; +static const char __pyx_k_cos[] = "cos"; +static const char __pyx_k_fit[] = "fit"; +static const char __pyx_k_sin[] = "sin"; +static const char __pyx_k_main[] = "__main__"; +static const char __pyx_k_rmse[] = "rmse"; +static const char __pyx_k_test[] = "__test__"; +static const char __pyx_k_dates[] = "dates"; +static const char __pyx_k_model[] = "model"; +static const char __pyx_k_numpy[] = "numpy"; +static const char __pyx_k_order[] = "order"; +static const char __pyx_k_range[] = "range"; +static const char __pyx_k_shape[] = "shape"; +static const char __pyx_k_zeros[] = "zeros"; +static const char __pyx_k_import[] = "__import__"; +static const char __pyx_k_predict[] = "predict"; +static const char __pyx_k_max_iter[] = "max_iter"; +static const char __pyx_k_residual[] = "residual"; +static const char __pyx_k_calc_rmse[] = "calc_rmse"; +static const char __pyx_k_ValueError[] = "ValueError"; +static const char __pyx_k_ccd_models[] = "ccd.models"; +static const char __pyx_k_FittedModel[] = "FittedModel"; +static const char __pyx_k_ImportError[] = "ImportError"; +static const char __pyx_k_avg_days_yr[] = "avg_days_yr"; +static const char __pyx_k_spectra_obs[] = "spectra_obs"; +static const char __pyx_k_RuntimeError[] = "RuntimeError"; +static const char __pyx_k_fitted_model[] = "fitted_model"; +static const char __pyx_k_ccd_math_utils[] = "ccd.math_utils"; +static const char __pyx_k_num_coefficients[] = "num_coefficients"; +static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; +static const char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; +static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import"; +static const char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; +static const char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd"; +static const char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported"; +static const char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous"; +static const char __pyx_k_numpy_core_umath_failed_to_impor[] = "numpy.core.umath failed to import"; +static const char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short."; +static PyObject *__pyx_n_s_F; +static PyObject *__pyx_n_s_FittedModel; +static PyObject *__pyx_kp_u_Format_string_allocated_too_shor; +static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2; +static PyObject *__pyx_n_s_ImportError; +static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor; +static PyObject *__pyx_n_s_RuntimeError; +static PyObject *__pyx_n_s_ValueError; +static PyObject *__pyx_n_s_avg_days_yr; +static PyObject *__pyx_n_s_calc_rmse; +static PyObject *__pyx_n_s_ccd_math_utils; +static PyObject *__pyx_n_s_ccd_models; +static PyObject *__pyx_n_s_cline_in_traceback; +static PyObject *__pyx_n_s_cos; +static PyObject *__pyx_n_s_dates; +static PyObject *__pyx_n_s_fit; +static PyObject *__pyx_n_s_fitted_model; +static PyObject *__pyx_n_s_import; +static PyObject *__pyx_n_s_lm; +static PyObject *__pyx_n_s_main; +static PyObject *__pyx_n_s_max_iter; +static PyObject *__pyx_n_s_model; +static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; +static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou; +static PyObject *__pyx_n_s_np; +static PyObject *__pyx_n_s_num_coefficients; +static PyObject *__pyx_n_s_numpy; +static PyObject *__pyx_kp_s_numpy_core_multiarray_failed_to; +static PyObject *__pyx_kp_s_numpy_core_umath_failed_to_impor; +static PyObject *__pyx_n_s_order; +static PyObject *__pyx_n_s_pi; +static PyObject *__pyx_n_s_predict; +static PyObject *__pyx_n_s_range; +static PyObject *__pyx_n_s_residual; +static PyObject *__pyx_n_s_rmse; +static PyObject *__pyx_n_s_shape; +static PyObject *__pyx_n_s_sin; +static PyObject *__pyx_n_s_spectra_obs; +static PyObject *__pyx_n_s_test; +static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd; +static PyObject *__pyx_n_s_zeros; +static PyObject *__pyx_pf_3ccd_6models_5lasso_fitted_model(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_dates, PyArrayObject *__pyx_v_spectra_obs, __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_max_iter, __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr, __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_num_coefficients, PyObject *__pyx_v_lm); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_5lasso_2predict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_model, PyArrayObject *__pyx_v_dates, __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr); /* proto */ +static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ +static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ +static PyObject *__pyx_int_0; +static PyObject *__pyx_int_1; +static PyObject *__pyx_int_2; +static PyObject *__pyx_int_3; +static PyObject *__pyx_int_4; +static PyObject *__pyx_int_5; +static PyObject *__pyx_int_6; +static PyObject *__pyx_int_7; +static PyObject *__pyx_slice_; +static PyObject *__pyx_slice__3; +static PyObject *__pyx_slice__5; +static PyObject *__pyx_slice__7; +static PyObject *__pyx_slice__9; +static PyObject *__pyx_tuple__2; +static PyObject *__pyx_tuple__4; +static PyObject *__pyx_tuple__6; 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+} +static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, + __Pyx_BufFmt_StackElem* stack, + __Pyx_TypeInfo* type) { + stack[0].field = &ctx->root; + stack[0].parent_offset = 0; + ctx->root.type = type; + ctx->root.name = "buffer dtype"; + ctx->root.offset = 0; + ctx->head = stack; + ctx->head->field = &ctx->root; + ctx->fmt_offset = 0; + ctx->head->parent_offset = 0; + ctx->new_packmode = '@'; + ctx->enc_packmode = '@'; + ctx->new_count = 1; + ctx->enc_count = 0; + ctx->enc_type = 0; + ctx->is_complex = 0; + ctx->is_valid_array = 0; + ctx->struct_alignment = 0; + while (type->typegroup == 'S') { + ++ctx->head; + ctx->head->field = type->fields; + ctx->head->parent_offset = 0; + type = type->fields->type; + } +} +static int __Pyx_BufFmt_ParseNumber(const char** ts) { + int count; + const char* t = *ts; + if (*t < '0' || *t > '9') { + return -1; + } else { + count = *t++ - '0'; + while (*t >= '0' && *t < '9') { + count *= 10; + count += *t++ - '0'; + } + } + *ts = t; + return count; +} +static int __Pyx_BufFmt_ExpectNumber(const char **ts) { + int number = __Pyx_BufFmt_ParseNumber(ts); + if (number == -1) + PyErr_Format(PyExc_ValueError,\ + "Does not understand character buffer dtype format string ('%c')", **ts); + return number; +} +static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) { + PyErr_Format(PyExc_ValueError, + "Unexpected format string character: '%c'", ch); +} +static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) { + switch (ch) { + case 'c': return "'char'"; + case 'b': return "'signed char'"; + case 'B': return "'unsigned char'"; + case 'h': return "'short'"; + case 'H': return "'unsigned short'"; + case 'i': return "'int'"; + case 'I': return "'unsigned int'"; + case 'l': return "'long'"; + case 'L': return "'unsigned long'"; + case 'q': return "'long long'"; + case 'Q': return "'unsigned long long'"; + case 'f': return (is_complex ? "'complex float'" : "'float'"); + case 'd': return (is_complex ? "'complex double'" : "'double'"); + case 'g': return (is_complex ? "'complex long double'" : "'long double'"); + case 'T': return "a struct"; + case 'O': return "Python object"; + case 'P': return "a pointer"; + case 's': case 'p': return "a string"; + case 0: return "end"; + default: return "unparseable format string"; + } +} +static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) { + switch (ch) { + case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return 2; + case 'i': case 'I': case 'l': case 'L': return 4; + case 'q': case 'Q': return 8; + case 'f': return (is_complex ? 8 : 4); + case 'd': return (is_complex ? 16 : 8); + case 'g': { + PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g').."); + return 0; + } + case 'O': case 'P': return sizeof(void*); + default: + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } +} +static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) { + switch (ch) { + case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return sizeof(short); + case 'i': case 'I': return sizeof(int); + case 'l': case 'L': return sizeof(long); + #ifdef HAVE_LONG_LONG + case 'q': case 'Q': return sizeof(PY_LONG_LONG); + #endif + case 'f': return sizeof(float) * (is_complex ? 2 : 1); + case 'd': return sizeof(double) * (is_complex ? 2 : 1); + case 'g': return sizeof(long double) * (is_complex ? 2 : 1); + case 'O': case 'P': return sizeof(void*); + default: { + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } + } +} +typedef struct { char c; short x; } __Pyx_st_short; +typedef struct { char c; int x; } __Pyx_st_int; +typedef struct { char c; long x; } __Pyx_st_long; +typedef struct { char c; float x; } __Pyx_st_float; +typedef struct { char c; double x; } __Pyx_st_double; +typedef struct { char c; long double x; } __Pyx_st_longdouble; +typedef struct { char c; void *x; } __Pyx_st_void_p; +#ifdef HAVE_LONG_LONG +typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong; +#endif +static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) { + switch (ch) { + case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short); + case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int); + case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long); +#ifdef HAVE_LONG_LONG + case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG); +#endif + case 'f': return sizeof(__Pyx_st_float) - sizeof(float); + case 'd': return sizeof(__Pyx_st_double) - sizeof(double); + case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double); + case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*); + default: + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } +} +/* These are for computing the padding at the end of the struct to align + on the first member of the struct. This will probably the same as above, + but we don't have any guarantees. + */ +typedef struct { short x; char c; } __Pyx_pad_short; +typedef struct { int x; char c; } __Pyx_pad_int; +typedef struct { long x; char c; } __Pyx_pad_long; +typedef struct { float x; char c; } __Pyx_pad_float; +typedef struct { double x; char c; } __Pyx_pad_double; +typedef struct { long double x; char c; } __Pyx_pad_longdouble; +typedef struct { void *x; char c; } __Pyx_pad_void_p; +#ifdef HAVE_LONG_LONG +typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong; +#endif +static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) { + switch (ch) { + case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short); + case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int); + case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long); +#ifdef HAVE_LONG_LONG + case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG); +#endif + case 'f': return sizeof(__Pyx_pad_float) - sizeof(float); + case 'd': return sizeof(__Pyx_pad_double) - sizeof(double); + case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double); + case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*); + default: + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } +} +static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) { + switch (ch) { + case 'c': + return 'H'; + case 'b': case 'h': case 'i': + case 'l': case 'q': case 's': case 'p': + return 'I'; + case 'B': case 'H': case 'I': case 'L': case 'Q': + return 'U'; + case 'f': case 'd': case 'g': + return (is_complex ? 'C' : 'R'); + case 'O': + return 'O'; + case 'P': + return 'P'; + default: { + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } + } +} +static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) { + if (ctx->head == NULL || ctx->head->field == &ctx->root) { + const char* expected; + const char* quote; + if (ctx->head == NULL) { + expected = "end"; + quote = ""; + } else { + expected = ctx->head->field->type->name; + quote = "'"; + } + PyErr_Format(PyExc_ValueError, + "Buffer dtype mismatch, expected %s%s%s but got %s", + quote, expected, quote, + __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex)); + } else { + __Pyx_StructField* field = ctx->head->field; + __Pyx_StructField* parent = (ctx->head - 1)->field; + PyErr_Format(PyExc_ValueError, + "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'", + field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex), + parent->type->name, field->name); + } +} +static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) { + char group; + size_t size, offset, arraysize = 1; + if (ctx->enc_type == 0) return 0; + if (ctx->head->field->type->arraysize[0]) { + int i, ndim = 0; + if (ctx->enc_type == 's' || ctx->enc_type == 'p') { + ctx->is_valid_array = ctx->head->field->type->ndim == 1; + ndim = 1; + if (ctx->enc_count != ctx->head->field->type->arraysize[0]) { + PyErr_Format(PyExc_ValueError, + "Expected a dimension of size %zu, got %zu", + ctx->head->field->type->arraysize[0], ctx->enc_count); + return -1; + } + } + if (!ctx->is_valid_array) { + PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d", + ctx->head->field->type->ndim, ndim); + return -1; + } + for (i = 0; i < ctx->head->field->type->ndim; i++) { + arraysize *= ctx->head->field->type->arraysize[i]; + } + ctx->is_valid_array = 0; + ctx->enc_count = 1; + } + group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex); + do { + __Pyx_StructField* field = ctx->head->field; + __Pyx_TypeInfo* type = field->type; + if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') { + size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex); + } else { + size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex); + } + if (ctx->enc_packmode == '@') { + size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex); + size_t align_mod_offset; + if (align_at == 0) return -1; + align_mod_offset = ctx->fmt_offset % align_at; + if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset; + if (ctx->struct_alignment == 0) + ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type, + ctx->is_complex); + } + if (type->size != size || type->typegroup != group) { + if (type->typegroup == 'C' && type->fields != NULL) { + size_t parent_offset = ctx->head->parent_offset + field->offset; + ++ctx->head; + ctx->head->field = type->fields; + ctx->head->parent_offset = parent_offset; + continue; + } + if ((type->typegroup == 'H' || group == 'H') && type->size == size) { + } else { + __Pyx_BufFmt_RaiseExpected(ctx); + return -1; + } + } + offset = ctx->head->parent_offset + field->offset; + if (ctx->fmt_offset != offset) { + PyErr_Format(PyExc_ValueError, + "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected", + (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset); + return -1; + } + ctx->fmt_offset += size; + if (arraysize) + ctx->fmt_offset += (arraysize - 1) * size; + --ctx->enc_count; + while (1) { + if (field == &ctx->root) { + ctx->head = NULL; + if (ctx->enc_count != 0) { + __Pyx_BufFmt_RaiseExpected(ctx); + return -1; + } + break; + } + ctx->head->field = ++field; + if (field->type == NULL) { + --ctx->head; + field = ctx->head->field; + continue; + } else if (field->type->typegroup == 'S') { + size_t parent_offset = ctx->head->parent_offset + field->offset; + if (field->type->fields->type == NULL) continue; + field = field->type->fields; + ++ctx->head; + ctx->head->field = field; + ctx->head->parent_offset = parent_offset; + break; + } else { + break; + } + } + } while (ctx->enc_count); + ctx->enc_type = 0; + ctx->is_complex = 0; + return 0; +} +static CYTHON_INLINE PyObject * +__pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp) +{ + const char *ts = *tsp; + int i = 0, number; + int ndim = ctx->head->field->type->ndim; +; + ++ts; + if (ctx->new_count != 1) { + PyErr_SetString(PyExc_ValueError, + "Cannot handle repeated arrays in format string"); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + while (*ts && *ts != ')') { + switch (*ts) { + case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue; + default: break; + } + number = __Pyx_BufFmt_ExpectNumber(&ts); + if (number == -1) return NULL; + if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i]) + return PyErr_Format(PyExc_ValueError, + "Expected a dimension of size %zu, got %d", + ctx->head->field->type->arraysize[i], number); + if (*ts != ',' && *ts != ')') + return PyErr_Format(PyExc_ValueError, + "Expected a comma in format string, got '%c'", *ts); + if (*ts == ',') ts++; + i++; + } + if (i != ndim) + return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d", + ctx->head->field->type->ndim, i); + if (!*ts) { + PyErr_SetString(PyExc_ValueError, + "Unexpected end of format string, expected ')'"); + return NULL; + } + ctx->is_valid_array = 1; + ctx->new_count = 1; + *tsp = ++ts; + return Py_None; +} +static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) { + int got_Z = 0; + while (1) { + switch(*ts) { + case 0: + if (ctx->enc_type != 0 && ctx->head == NULL) { + __Pyx_BufFmt_RaiseExpected(ctx); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + if (ctx->head != NULL) { + __Pyx_BufFmt_RaiseExpected(ctx); + return NULL; + } + return ts; + case ' ': + case '\r': + case '\n': + ++ts; + break; + case '<': + if (!__Pyx_IsLittleEndian()) { + PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler"); + return NULL; + } + ctx->new_packmode = '='; + ++ts; + break; + case '>': + case '!': + if (__Pyx_IsLittleEndian()) { + PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler"); + return NULL; + } + ctx->new_packmode = '='; + ++ts; + break; + case '=': + case '@': + case '^': + ctx->new_packmode = *ts++; + break; + case 'T': + { + const char* ts_after_sub; + size_t i, struct_count = ctx->new_count; + size_t struct_alignment = ctx->struct_alignment; + ctx->new_count = 1; + ++ts; + if (*ts != '{') { + PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'"); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_type = 0; + ctx->enc_count = 0; + ctx->struct_alignment = 0; + ++ts; + ts_after_sub = ts; + for (i = 0; i != struct_count; ++i) { + ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts); + if (!ts_after_sub) return NULL; + } + ts = ts_after_sub; + if (struct_alignment) ctx->struct_alignment = struct_alignment; + } + break; + case '}': + { + size_t alignment = ctx->struct_alignment; + ++ts; + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_type = 0; + if (alignment && ctx->fmt_offset % alignment) { + ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment); + } + } + return ts; + case 'x': + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->fmt_offset += ctx->new_count; + ctx->new_count = 1; + ctx->enc_count = 0; + ctx->enc_type = 0; + ctx->enc_packmode = ctx->new_packmode; + ++ts; + break; + case 'Z': + got_Z = 1; + ++ts; + if (*ts != 'f' && *ts != 'd' && *ts != 'g') { + __Pyx_BufFmt_RaiseUnexpectedChar('Z'); + return NULL; + } + case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I': + case 'l': case 'L': case 'q': case 'Q': + case 'f': case 'd': case 'g': + case 'O': case 'p': + if (ctx->enc_type == *ts && got_Z == ctx->is_complex && + ctx->enc_packmode == ctx->new_packmode) { + ctx->enc_count += ctx->new_count; + ctx->new_count = 1; + got_Z = 0; + ++ts; + break; + } + case 's': + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_count = ctx->new_count; + ctx->enc_packmode = ctx->new_packmode; + ctx->enc_type = *ts; + ctx->is_complex = got_Z; + ++ts; + ctx->new_count = 1; + got_Z = 0; + break; + case ':': + ++ts; + while(*ts != ':') ++ts; + ++ts; + break; + case '(': + if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL; + break; + default: + { + int number = __Pyx_BufFmt_ExpectNumber(&ts); + if (number == -1) return NULL; + ctx->new_count = (size_t)number; + } + } + } +} +static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) { + buf->buf = NULL; + buf->obj = NULL; + buf->strides = __Pyx_zeros; + buf->shape = __Pyx_zeros; + buf->suboffsets = __Pyx_minusones; +} +static CYTHON_INLINE int __Pyx_GetBufferAndValidate( + Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, + int nd, int cast, __Pyx_BufFmt_StackElem* stack) +{ + if (obj == Py_None || obj == NULL) { + __Pyx_ZeroBuffer(buf); + return 0; + } + buf->buf = NULL; + if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail; + if (buf->ndim != nd) { + PyErr_Format(PyExc_ValueError, + "Buffer has wrong number of dimensions (expected %d, got %d)", + nd, buf->ndim); + goto fail; + } + if (!cast) { + __Pyx_BufFmt_Context ctx; + __Pyx_BufFmt_Init(&ctx, stack, dtype); + if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail; + } + if ((unsigned)buf->itemsize != dtype->size) { + PyErr_Format(PyExc_ValueError, + "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)", + buf->itemsize, (buf->itemsize > 1) ? "s" : "", + dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : ""); + goto fail; + } + if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones; + return 0; +fail:; + __Pyx_ZeroBuffer(buf); + return -1; +} +static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { + if (info->buf == NULL) return; + if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL; + __Pyx_ReleaseBuffer(info); +} + +/* GetBuiltinName */ + static PyObject *__Pyx_GetBuiltinName(PyObject *name) { + PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name); + if (unlikely(!result)) { + PyErr_Format(PyExc_NameError, +#if PY_MAJOR_VERSION >= 3 + "name '%U' is not defined", name); +#else + "name '%.200s' is not defined", PyString_AS_STRING(name)); +#endif + } + return result; +} + +/* GetModuleGlobalName */ + static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { + PyObject *result; +#if !CYTHON_AVOID_BORROWED_REFS + result = PyDict_GetItem(__pyx_d, name); + if (likely(result)) { + Py_INCREF(result); + } else { +#else + result = PyObject_GetItem(__pyx_d, name); + if (!result) { + PyErr_Clear(); +#endif + result = __Pyx_GetBuiltinName(name); + } + return result; +} + +/* PyObjectCall */ + #if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { + PyObject *result; + ternaryfunc call = func->ob_type->tp_call; + if (unlikely(!call)) + return PyObject_Call(func, arg, kw); + if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) + return NULL; + result = (*call)(func, arg, kw); + Py_LeaveRecursiveCall(); + if (unlikely(!result) && unlikely(!PyErr_Occurred())) { + PyErr_SetString( + PyExc_SystemError, + "NULL result without error in PyObject_Call"); + } + return result; +} +#endif + +/* PyCFunctionFastCall */ + #if CYTHON_FAST_PYCCALL +static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, PyObject **args, Py_ssize_t nargs) { + PyCFunctionObject *func = (PyCFunctionObject*)func_obj; + PyCFunction meth = PyCFunction_GET_FUNCTION(func); + PyObject *self = PyCFunction_GET_SELF(func); + int flags = PyCFunction_GET_FLAGS(func); + assert(PyCFunction_Check(func)); + assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))); + assert(nargs >= 0); + assert(nargs == 0 || args != NULL); + /* _PyCFunction_FastCallDict() must not be called with an exception set, + because it may clear it (directly or indirectly) and so the + caller loses its exception */ + assert(!PyErr_Occurred()); + if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) { + return (*((__Pyx_PyCFunctionFastWithKeywords)meth)) (self, args, nargs, NULL); + } else { + return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs); + } +} +#endif + +/* PyFunctionFastCall */ + #if CYTHON_FAST_PYCALL +#include "frameobject.h" +static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na, + PyObject *globals) { + PyFrameObject *f; + PyThreadState *tstate = PyThreadState_GET(); + PyObject **fastlocals; + Py_ssize_t i; + PyObject *result; + assert(globals != NULL); + /* XXX Perhaps we should create a specialized + PyFrame_New() that doesn't take locals, but does + take builtins without sanity checking them. + */ + assert(tstate != NULL); + f = PyFrame_New(tstate, co, globals, NULL); + if (f == NULL) { + return NULL; + } + fastlocals = f->f_localsplus; + for (i = 0; i < na; i++) { + Py_INCREF(*args); + fastlocals[i] = *args++; + } + result = PyEval_EvalFrameEx(f,0); + ++tstate->recursion_depth; + Py_DECREF(f); + --tstate->recursion_depth; + return result; +} +#if 1 || PY_VERSION_HEX < 0x030600B1 +static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs) { + PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func); + PyObject *globals = PyFunction_GET_GLOBALS(func); + PyObject *argdefs = PyFunction_GET_DEFAULTS(func); + PyObject *closure; +#if PY_MAJOR_VERSION >= 3 + PyObject *kwdefs; +#endif + PyObject *kwtuple, **k; + PyObject **d; + Py_ssize_t nd; + Py_ssize_t nk; + PyObject *result; + assert(kwargs == NULL || PyDict_Check(kwargs)); + nk = kwargs ? PyDict_Size(kwargs) : 0; + if (Py_EnterRecursiveCall((char*)" while calling a Python object")) { + return NULL; + } + if ( +#if PY_MAJOR_VERSION >= 3 + co->co_kwonlyargcount == 0 && +#endif + likely(kwargs == NULL || nk == 0) && + co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) { + if (argdefs == NULL && co->co_argcount == nargs) { + result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals); + goto done; + } + else if (nargs == 0 && argdefs != NULL + && co->co_argcount == Py_SIZE(argdefs)) { + /* function called with no arguments, but all parameters have + a default value: use default values as arguments .*/ + args = &PyTuple_GET_ITEM(argdefs, 0); + result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals); + goto done; + } + } + if (kwargs != NULL) { + Py_ssize_t pos, i; + kwtuple = PyTuple_New(2 * nk); + if (kwtuple == NULL) { + result = NULL; + goto done; + } + k = &PyTuple_GET_ITEM(kwtuple, 0); + pos = i = 0; + while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) { + Py_INCREF(k[i]); + Py_INCREF(k[i+1]); + i += 2; + } + nk = i / 2; + } + else { + kwtuple = NULL; + k = NULL; + } + closure = PyFunction_GET_CLOSURE(func); +#if PY_MAJOR_VERSION >= 3 + kwdefs = PyFunction_GET_KW_DEFAULTS(func); +#endif + if (argdefs != NULL) { + d = &PyTuple_GET_ITEM(argdefs, 0); + nd = Py_SIZE(argdefs); + } + else { + d = NULL; + nd = 0; + } +#if PY_MAJOR_VERSION >= 3 + result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL, + args, nargs, + k, (int)nk, + d, (int)nd, kwdefs, closure); +#else + result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL, + args, nargs, + k, (int)nk, + d, (int)nd, closure); +#endif + Py_XDECREF(kwtuple); +done: + Py_LeaveRecursiveCall(); + return result; +} +#endif +#endif + +/* PyObjectCallMethO */ + #if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { + PyObject *self, *result; + PyCFunction cfunc; + cfunc = PyCFunction_GET_FUNCTION(func); + self = PyCFunction_GET_SELF(func); + if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) + return NULL; + result = cfunc(self, arg); + Py_LeaveRecursiveCall(); + if (unlikely(!result) && unlikely(!PyErr_Occurred())) { + PyErr_SetString( + PyExc_SystemError, + "NULL result without error in PyObject_Call"); + } + return result; +} +#endif + +/* PyObjectCallOneArg */ + #if CYTHON_COMPILING_IN_CPYTHON +static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) { + PyObject *result; + PyObject *args = PyTuple_New(1); + if (unlikely(!args)) return NULL; + Py_INCREF(arg); + PyTuple_SET_ITEM(args, 0, arg); + result = __Pyx_PyObject_Call(func, args, NULL); + Py_DECREF(args); + return result; +} +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { +#if CYTHON_FAST_PYCALL + if (PyFunction_Check(func)) { + return __Pyx_PyFunction_FastCall(func, &arg, 1); + } +#endif + if (likely(PyCFunction_Check(func))) { + if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { + return __Pyx_PyObject_CallMethO(func, arg); +#if CYTHON_FAST_PYCCALL + } else if (PyCFunction_GET_FLAGS(func) & METH_FASTCALL) { + return __Pyx_PyCFunction_FastCall(func, &arg, 1); +#endif + } + } + return __Pyx__PyObject_CallOneArg(func, arg); +} +#else +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { + PyObject *result; + PyObject *args = PyTuple_Pack(1, arg); + if (unlikely(!args)) return NULL; + result = __Pyx_PyObject_Call(func, args, NULL); + Py_DECREF(args); + return result; +} +#endif + +/* ExtTypeTest */ + static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + if (likely(PyObject_TypeCheck(obj, type))) + return 1; + PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", + Py_TYPE(obj)->tp_name, type->tp_name); + return 0; +} + +/* PyErrFetchRestore */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + tmp_type = tstate->curexc_type; + tmp_value = tstate->curexc_value; + tmp_tb = tstate->curexc_traceback; + tstate->curexc_type = type; + tstate->curexc_value = value; + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +} +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { + *type = tstate->curexc_type; + *value = tstate->curexc_value; + *tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +} +#endif + +/* RaiseTooManyValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { + PyErr_Format(PyExc_ValueError, + "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); +} + +/* RaiseNeedMoreValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { + PyErr_Format(PyExc_ValueError, + "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", + index, (index == 1) ? "" : "s"); +} + +/* IterFinish */ + static CYTHON_INLINE int __Pyx_IterFinish(void) { +#if CYTHON_FAST_THREAD_STATE + PyThreadState *tstate = PyThreadState_GET(); + PyObject* exc_type = tstate->curexc_type; + if (unlikely(exc_type)) { + if (likely(exc_type == PyExc_StopIteration) || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)) { + PyObject *exc_value, *exc_tb; + exc_value = tstate->curexc_value; + exc_tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; + Py_DECREF(exc_type); + Py_XDECREF(exc_value); + Py_XDECREF(exc_tb); + return 0; + } else { + return -1; + } + } + return 0; +#else + if (unlikely(PyErr_Occurred())) { + if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) { + PyErr_Clear(); + return 0; + } else { + return -1; + } + } + return 0; +#endif +} + +/* UnpackItemEndCheck */ + static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { + if (unlikely(retval)) { + Py_DECREF(retval); + __Pyx_RaiseTooManyValuesError(expected); + return -1; + } else { + return __Pyx_IterFinish(); + } + return 0; +} + +/* RaiseArgTupleInvalid */ + static void __Pyx_RaiseArgtupleInvalid( + const char* func_name, + int exact, + Py_ssize_t num_min, + Py_ssize_t num_max, + Py_ssize_t num_found) +{ + Py_ssize_t num_expected; + const char *more_or_less; + if (num_found < num_min) { + num_expected = num_min; + more_or_less = "at least"; + } else { + num_expected = num_max; + more_or_less = "at most"; + } + if (exact) { + more_or_less = "exactly"; + } + PyErr_Format(PyExc_TypeError, + "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", + func_name, more_or_less, num_expected, + (num_expected == 1) ? "" : "s", num_found); +} + +/* RaiseDoubleKeywords */ + static void __Pyx_RaiseDoubleKeywordsError( + const char* func_name, + PyObject* kw_name) +{ + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION >= 3 + "%s() got multiple values for keyword argument '%U'", func_name, kw_name); + #else + "%s() got multiple values for keyword argument '%s'", func_name, + PyString_AsString(kw_name)); + #endif +} + +/* ParseKeywords */ + static int __Pyx_ParseOptionalKeywords( + PyObject *kwds, + PyObject **argnames[], + PyObject *kwds2, + PyObject *values[], + Py_ssize_t num_pos_args, + const char* function_name) +{ + PyObject *key = 0, *value = 0; + Py_ssize_t pos = 0; + PyObject*** name; + PyObject*** first_kw_arg = argnames + num_pos_args; + while (PyDict_Next(kwds, &pos, &key, &value)) { + name = first_kw_arg; + while (*name && (**name != key)) name++; + if (*name) { + values[name-argnames] = value; + continue; + } + name = first_kw_arg; + #if PY_MAJOR_VERSION < 3 + if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) { + while (*name) { + if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) + && _PyString_Eq(**name, key)) { + values[name-argnames] = value; + break; + } + name++; + } + if (*name) continue; + else { + PyObject*** argname = argnames; + while (argname != first_kw_arg) { + if ((**argname == key) || ( + (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) + && _PyString_Eq(**argname, key))) { + goto arg_passed_twice; + } + argname++; + } + } + } else + #endif + if (likely(PyUnicode_Check(key))) { + while (*name) { + int cmp = (**name == key) ? 0 : + #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 + (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : + #endif + PyUnicode_Compare(**name, key); + if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; + if (cmp == 0) { + values[name-argnames] = value; + break; + } + name++; + } + if (*name) continue; + else { + PyObject*** argname = argnames; + while (argname != first_kw_arg) { + int cmp = (**argname == key) ? 0 : + #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 + (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : + #endif + PyUnicode_Compare(**argname, key); + if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; + if (cmp == 0) goto arg_passed_twice; + argname++; + } + } + } else + goto invalid_keyword_type; + if (kwds2) { + if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; + } else { + goto invalid_keyword; + } + } + return 0; +arg_passed_twice: + __Pyx_RaiseDoubleKeywordsError(function_name, key); + goto bad; +invalid_keyword_type: + PyErr_Format(PyExc_TypeError, + "%.200s() keywords must be strings", function_name); + goto bad; +invalid_keyword: + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION < 3 + "%.200s() got an unexpected keyword argument '%.200s'", + function_name, PyString_AsString(key)); + #else + "%s() got an unexpected keyword argument '%U'", + function_name, key); + #endif +bad: + return -1; +} + +/* ArgTypeTest */ + static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { + PyErr_Format(PyExc_TypeError, + "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", + name, type->tp_name, Py_TYPE(obj)->tp_name); +} +static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, + const char *name, int exact) +{ + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + if (none_allowed && obj == Py_None) return 1; + else if (exact) { + if (likely(Py_TYPE(obj) == type)) return 1; + #if PY_MAJOR_VERSION == 2 + else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; + #endif + } + else { + if (likely(PyObject_TypeCheck(obj, type))) return 1; + } + __Pyx_RaiseArgumentTypeInvalid(name, obj, type); + return 0; +} + +/* RaiseException */ + #if PY_MAJOR_VERSION < 3 +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, + CYTHON_UNUSED PyObject *cause) { + __Pyx_PyThreadState_declare + Py_XINCREF(type); + if (!value || value == Py_None) + value = NULL; + else + Py_INCREF(value); + if (!tb || tb == Py_None) + tb = NULL; + else { + Py_INCREF(tb); + if (!PyTraceBack_Check(tb)) { + PyErr_SetString(PyExc_TypeError, + "raise: arg 3 must be a traceback or None"); + goto raise_error; + } + } + if (PyType_Check(type)) { +#if CYTHON_COMPILING_IN_PYPY + if (!value) { + Py_INCREF(Py_None); + value = Py_None; + } +#endif + PyErr_NormalizeException(&type, &value, &tb); + } else { + if (value) { + PyErr_SetString(PyExc_TypeError, + "instance exception may not have a separate value"); + goto raise_error; + } + value = type; + type = (PyObject*) Py_TYPE(type); + Py_INCREF(type); + if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { + PyErr_SetString(PyExc_TypeError, + "raise: exception class must be a subclass of BaseException"); + goto raise_error; + } + } + __Pyx_PyThreadState_assign + __Pyx_ErrRestore(type, value, tb); + return; +raise_error: + Py_XDECREF(value); + Py_XDECREF(type); + Py_XDECREF(tb); + return; +} +#else +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { + PyObject* owned_instance = NULL; + if (tb == Py_None) { + tb = 0; + } else if (tb && !PyTraceBack_Check(tb)) { + PyErr_SetString(PyExc_TypeError, + "raise: arg 3 must be a traceback or None"); + goto bad; + } + if (value == Py_None) + value = 0; + if (PyExceptionInstance_Check(type)) { + if (value) { + PyErr_SetString(PyExc_TypeError, + "instance exception may not have a separate value"); + goto bad; + } + value = type; + type = (PyObject*) Py_TYPE(value); + } else if (PyExceptionClass_Check(type)) { + PyObject *instance_class = NULL; + if (value && PyExceptionInstance_Check(value)) { + instance_class = (PyObject*) Py_TYPE(value); + if (instance_class != type) { + int is_subclass = PyObject_IsSubclass(instance_class, type); + if (!is_subclass) { + instance_class = NULL; + } else if (unlikely(is_subclass == -1)) { + goto bad; + } else { + type = instance_class; + } + } + } + if (!instance_class) { + PyObject *args; + if (!value) + args = PyTuple_New(0); + else if (PyTuple_Check(value)) { + Py_INCREF(value); + args = value; + } else + args = PyTuple_Pack(1, value); + if (!args) + goto bad; + owned_instance = PyObject_Call(type, args, NULL); + Py_DECREF(args); + if (!owned_instance) + goto bad; + value = owned_instance; + if (!PyExceptionInstance_Check(value)) { + PyErr_Format(PyExc_TypeError, + "calling %R should have returned an instance of " + "BaseException, not %R", + type, Py_TYPE(value)); + goto bad; + } + } + } else { + PyErr_SetString(PyExc_TypeError, + "raise: exception class must be a subclass of BaseException"); + goto bad; + } +#if PY_VERSION_HEX >= 0x03030000 + if (cause) { +#else + if (cause && cause != Py_None) { +#endif + PyObject *fixed_cause; + if (cause == Py_None) { + fixed_cause = NULL; + } else if (PyExceptionClass_Check(cause)) { + fixed_cause = PyObject_CallObject(cause, NULL); + if (fixed_cause == NULL) + goto bad; + } else if (PyExceptionInstance_Check(cause)) { + fixed_cause = cause; + Py_INCREF(fixed_cause); + } else { + PyErr_SetString(PyExc_TypeError, + "exception causes must derive from " + "BaseException"); + goto bad; + } + PyException_SetCause(value, fixed_cause); + } + PyErr_SetObject(type, value); + if (tb) { +#if CYTHON_COMPILING_IN_PYPY + PyObject *tmp_type, *tmp_value, *tmp_tb; + PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb); + Py_INCREF(tb); + PyErr_Restore(tmp_type, tmp_value, tb); + Py_XDECREF(tmp_tb); +#else + PyThreadState *tstate = PyThreadState_GET(); + PyObject* tmp_tb = tstate->curexc_traceback; + if (tb != tmp_tb) { + Py_INCREF(tb); + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_tb); + } +#endif + } +bad: + Py_XDECREF(owned_instance); + return; +} +#endif + +/* WriteUnraisableException */ + static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, + CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename, + int full_traceback, CYTHON_UNUSED int nogil) { + PyObject *old_exc, *old_val, *old_tb; + PyObject *ctx; + __Pyx_PyThreadState_declare +#ifdef WITH_THREAD + PyGILState_STATE state; + if (nogil) + state = PyGILState_Ensure(); +#ifdef _MSC_VER + else state = (PyGILState_STATE)-1; +#endif +#endif + __Pyx_PyThreadState_assign + __Pyx_ErrFetch(&old_exc, &old_val, &old_tb); + if (full_traceback) { + Py_XINCREF(old_exc); + Py_XINCREF(old_val); + Py_XINCREF(old_tb); + __Pyx_ErrRestore(old_exc, old_val, old_tb); + PyErr_PrintEx(1); + } + #if PY_MAJOR_VERSION < 3 + ctx = PyString_FromString(name); + #else + ctx = PyUnicode_FromString(name); + #endif + __Pyx_ErrRestore(old_exc, old_val, old_tb); + if (!ctx) { + PyErr_WriteUnraisable(Py_None); + } else { + PyErr_WriteUnraisable(ctx); + Py_DECREF(ctx); + } +#ifdef WITH_THREAD + if (nogil) + PyGILState_Release(state); +#endif +} + +/* RaiseNoneIterError */ + static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { + PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); +} + +/* SaveResetException */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { + *type = tstate->exc_type; + *value = tstate->exc_value; + *tb = tstate->exc_traceback; + Py_XINCREF(*type); + Py_XINCREF(*value); + Py_XINCREF(*tb); +} +static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + tmp_type = tstate->exc_type; + tmp_value = tstate->exc_value; + tmp_tb = tstate->exc_traceback; + tstate->exc_type = type; + tstate->exc_value = value; + tstate->exc_traceback = tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +} +#endif + +/* PyErrExceptionMatches */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) { + PyObject *exc_type = tstate->curexc_type; + if (exc_type == err) return 1; + if (unlikely(!exc_type)) return 0; + return PyErr_GivenExceptionMatches(exc_type, err); +} +#endif + +/* GetException */ + #if CYTHON_FAST_THREAD_STATE +static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { +#else +static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { +#endif + PyObject *local_type, *local_value, *local_tb; +#if CYTHON_FAST_THREAD_STATE + PyObject *tmp_type, *tmp_value, *tmp_tb; + local_type = tstate->curexc_type; + local_value = tstate->curexc_value; + local_tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +#else + PyErr_Fetch(&local_type, &local_value, &local_tb); +#endif + PyErr_NormalizeException(&local_type, &local_value, &local_tb); +#if CYTHON_FAST_THREAD_STATE + if (unlikely(tstate->curexc_type)) +#else + if (unlikely(PyErr_Occurred())) +#endif + goto bad; + #if PY_MAJOR_VERSION >= 3 + if (local_tb) { + if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0)) + goto bad; + } + #endif + Py_XINCREF(local_tb); + Py_XINCREF(local_type); + Py_XINCREF(local_value); + *type = local_type; + *value = local_value; + *tb = local_tb; +#if CYTHON_FAST_THREAD_STATE + tmp_type = tstate->exc_type; + tmp_value = tstate->exc_value; + tmp_tb = tstate->exc_traceback; + tstate->exc_type = local_type; + tstate->exc_value = local_value; + tstate->exc_traceback = local_tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +#else + PyErr_SetExcInfo(local_type, local_value, local_tb); +#endif + return 0; +bad: + *type = 0; + *value = 0; + *tb = 0; + Py_XDECREF(local_type); + Py_XDECREF(local_value); + Py_XDECREF(local_tb); + return -1; +} + +/* Import */ + static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { + PyObject *empty_list = 0; + PyObject *module = 0; + PyObject *global_dict = 0; + PyObject *empty_dict = 0; + PyObject *list; + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_import; + py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); + if (!py_import) + goto bad; + #endif + if (from_list) + list = from_list; + else { + empty_list = PyList_New(0); + if (!empty_list) + goto bad; + list = empty_list; + } + global_dict = PyModule_GetDict(__pyx_m); + if (!global_dict) + goto bad; + empty_dict = PyDict_New(); + if (!empty_dict) + goto bad; + { + #if PY_MAJOR_VERSION >= 3 + if (level == -1) { + if (strchr(__Pyx_MODULE_NAME, '.')) { + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_level = PyInt_FromLong(1); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, 1); + #endif + if (!module) { + if (!PyErr_ExceptionMatches(PyExc_ImportError)) + goto bad; + PyErr_Clear(); + } + } + level = 0; + } + #endif + if (!module) { + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_level = PyInt_FromLong(level); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, level); + #endif + } + } +bad: + #if PY_VERSION_HEX < 0x03030000 + Py_XDECREF(py_import); + #endif + Py_XDECREF(empty_list); + Py_XDECREF(empty_dict); + return module; +} + +/* ImportFrom */ + static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { + PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); + if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { + PyErr_Format(PyExc_ImportError, + #if PY_MAJOR_VERSION < 3 + "cannot import name %.230s", PyString_AS_STRING(name)); + #else + "cannot import name %S", name); + #endif + } + return value; +} + +/* CLineInTraceback */ + static int __Pyx_CLineForTraceback(int c_line) { +#ifdef CYTHON_CLINE_IN_TRACEBACK + return ((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0; +#else + PyObject **cython_runtime_dict; + PyObject *use_cline; + cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); + if (unlikely(!cython_runtime_dict)) { + PyObject *ptype, *pvalue, *ptraceback; + PyObject *use_cline_obj; + PyErr_Fetch(&ptype, &pvalue, &ptraceback); + use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); + if (use_cline_obj) { + use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; + Py_DECREF(use_cline_obj); + } else { + use_cline = NULL; + } + PyErr_Restore(ptype, pvalue, ptraceback); + } else { + use_cline = PyDict_GetItem(*_PyObject_GetDictPtr(__pyx_cython_runtime), __pyx_n_s_cline_in_traceback); + } + if (!use_cline) { + c_line = 0; + PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); + } + else if (PyObject_Not(use_cline) != 0) { + c_line = 0; + } + return c_line; +#endif +} + +/* CodeObjectCache */ + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + int start = 0, mid = 0, end = count - 1; + if (end >= 0 && code_line > entries[end].code_line) { + return count; + } + while (start < end) { + mid = start + (end - start) / 2; + if (code_line < entries[mid].code_line) { + end = mid; + } else if (code_line > entries[mid].code_line) { + start = mid + 1; + } else { + return mid; + } + } + if (code_line <= entries[mid].code_line) { + return mid; + } else { + return mid + 1; + } +} +static PyCodeObject *__pyx_find_code_object(int code_line) { + PyCodeObject* code_object; + int pos; + if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { + return NULL; + } + pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); + if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { + return NULL; + } + code_object = __pyx_code_cache.entries[pos].code_object; + Py_INCREF(code_object); + return code_object; +} +static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { + int pos, i; + __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; + if (unlikely(!code_line)) { + return; + } + if (unlikely(!entries)) { + entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); + if (likely(entries)) { + __pyx_code_cache.entries = entries; + __pyx_code_cache.max_count = 64; + __pyx_code_cache.count = 1; + entries[0].code_line = code_line; + entries[0].code_object = code_object; + Py_INCREF(code_object); + } + return; + } + pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); + if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { + PyCodeObject* tmp = entries[pos].code_object; + entries[pos].code_object = code_object; + Py_DECREF(tmp); + return; + } + if (__pyx_code_cache.count == __pyx_code_cache.max_count) { + int new_max = __pyx_code_cache.max_count + 64; + entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( + __pyx_code_cache.entries, (size_t)new_max*sizeof(__Pyx_CodeObjectCacheEntry)); + if (unlikely(!entries)) { + return; + } + __pyx_code_cache.entries = entries; + __pyx_code_cache.max_count = new_max; + } + for (i=__pyx_code_cache.count; i>pos; i--) { + entries[i] = entries[i-1]; + } + entries[pos].code_line = code_line; + entries[pos].code_object = code_object; + __pyx_code_cache.count++; + Py_INCREF(code_object); +} + +/* AddTraceback */ + #include "compile.h" +#include "frameobject.h" +#include "traceback.h" +static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( + const char *funcname, int c_line, + int py_line, const char *filename) { + PyCodeObject *py_code = 0; + PyObject *py_srcfile = 0; + PyObject *py_funcname = 0; + #if PY_MAJOR_VERSION < 3 + py_srcfile = PyString_FromString(filename); + #else + py_srcfile = PyUnicode_FromString(filename); + #endif + if (!py_srcfile) goto bad; + if (c_line) { + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); + #else + py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); + #endif + } + else { + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromString(funcname); + #else + py_funcname = PyUnicode_FromString(funcname); + #endif + } + if (!py_funcname) goto bad; + py_code = __Pyx_PyCode_New( + 0, + 0, + 0, + 0, + 0, + __pyx_empty_bytes, /*PyObject *code,*/ + __pyx_empty_tuple, /*PyObject *consts,*/ + __pyx_empty_tuple, /*PyObject *names,*/ + __pyx_empty_tuple, /*PyObject *varnames,*/ + __pyx_empty_tuple, /*PyObject *freevars,*/ + __pyx_empty_tuple, /*PyObject *cellvars,*/ + py_srcfile, /*PyObject *filename,*/ + py_funcname, /*PyObject *name,*/ + py_line, + __pyx_empty_bytes /*PyObject *lnotab*/ + ); + Py_DECREF(py_srcfile); + Py_DECREF(py_funcname); + return py_code; +bad: + Py_XDECREF(py_srcfile); + Py_XDECREF(py_funcname); + return NULL; +} +static void __Pyx_AddTraceback(const char *funcname, int c_line, + int py_line, const char *filename) { + PyCodeObject *py_code = 0; + PyFrameObject *py_frame = 0; + if (c_line) { + c_line = __Pyx_CLineForTraceback(c_line); + } + py_code = __pyx_find_code_object(c_line ? -c_line : py_line); + if (!py_code) { + py_code = __Pyx_CreateCodeObjectForTraceback( + funcname, c_line, py_line, filename); + if (!py_code) goto bad; + __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); + } + py_frame = PyFrame_New( + PyThreadState_GET(), /*PyThreadState *tstate,*/ + py_code, /*PyCodeObject *code,*/ + __pyx_d, /*PyObject *globals,*/ + 0 /*PyObject *locals*/ + ); + if (!py_frame) goto bad; + __Pyx_PyFrame_SetLineNumber(py_frame, py_line); + PyTraceBack_Here(py_frame); +bad: + Py_XDECREF(py_code); + Py_XDECREF(py_frame); +} + +#if PY_MAJOR_VERSION < 3 +static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) { + if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags); + if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags); + PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name); + return -1; +} +static void __Pyx_ReleaseBuffer(Py_buffer *view) { + PyObject *obj = view->obj; + if (!obj) return; + if (PyObject_CheckBuffer(obj)) { + PyBuffer_Release(view); + return; + } + if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) { __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view); return; } + Py_DECREF(obj); + view->obj = NULL; +} +#endif + + + /* CIntFromPyVerify */ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) +#define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ + __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) +#define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\ + {\ + func_type value = func_value;\ + if (sizeof(target_type) < sizeof(func_type)) {\ + if (unlikely(value != (func_type) (target_type) value)) {\ + func_type zero = 0;\ + if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\ + return (target_type) -1;\ + if (is_unsigned && unlikely(value < zero))\ + goto raise_neg_overflow;\ + else\ + goto raise_overflow;\ + }\ + }\ + return (target_type) value;\ + } + +/* Declarations */ + #if CYTHON_CCOMPLEX + #ifdef __cplusplus + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + return ::std::complex< float >(x, y); + } + #else + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + return x + y*(__pyx_t_float_complex)_Complex_I; + } + #endif +#else + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + __pyx_t_float_complex z; + z.real = x; + z.imag = y; + return z; + } +#endif + +/* Arithmetic */ + #if CYTHON_CCOMPLEX +#else + static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + return (a.real == b.real) && (a.imag == b.imag); + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real + b.real; + z.imag = a.imag + b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real - b.real; + z.imag = a.imag - b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real * b.real - a.imag * b.imag; + z.imag = a.real * b.imag + a.imag * b.real; + return z; + } + #if 1 + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + if (b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real); + } else if (fabsf(b.real) >= fabsf(b.imag)) { + if (b.real == 0 && b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.imag); + } else { + float r = b.imag / b.real; + float s = 1.0 / (b.real + b.imag * r); + return __pyx_t_float_complex_from_parts( + (a.real + a.imag * r) * s, (a.imag - a.real * r) * s); + } + } else { + float r = b.real / b.imag; + float s = 1.0 / (b.imag + b.real * r); + return __pyx_t_float_complex_from_parts( + (a.real * r + a.imag) * s, (a.imag * r - a.real) * s); + } + } + #else + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + if (b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real); + } else { + float denom = b.real * b.real + b.imag * b.imag; + return __pyx_t_float_complex_from_parts( + (a.real * b.real + a.imag * b.imag) / denom, + (a.imag * b.real - a.real * b.imag) / denom); + } + } + #endif + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex a) { + __pyx_t_float_complex z; + z.real = -a.real; + z.imag = -a.imag; + return z; + } + static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex a) { + return (a.real == 0) && (a.imag == 0); + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex a) { + __pyx_t_float_complex z; + z.real = a.real; + z.imag = -a.imag; + return z; + } + #if 1 + static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex z) { + #if !defined(HAVE_HYPOT) || defined(_MSC_VER) + return sqrtf(z.real*z.real + z.imag*z.imag); + #else + return hypotf(z.real, z.imag); + #endif + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + float r, lnr, theta, z_r, z_theta; + if (b.imag == 0 && b.real == (int)b.real) { + if (b.real < 0) { + float denom = a.real * a.real + a.imag * a.imag; + a.real = a.real / denom; + a.imag = -a.imag / denom; + b.real = -b.real; + } + switch ((int)b.real) { + case 0: + z.real = 1; + z.imag = 0; + return z; + case 1: + return a; + case 2: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(a, a); + case 3: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(z, a); + case 4: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(z, z); + } + } + if (a.imag == 0) { + if (a.real == 0) { + return a; + } else if (b.imag == 0) { + z.real = powf(a.real, b.real); + z.imag = 0; + return z; + } else if (a.real > 0) { + r = a.real; + theta = 0; + } else { + r = -a.real; + theta = atan2f(0, -1); + } + } else { + r = __Pyx_c_abs_float(a); + theta = atan2f(a.imag, a.real); + } + lnr = logf(r); + z_r = expf(lnr * b.real - theta * b.imag); + z_theta = theta * b.real + lnr * b.imag; + z.real = z_r * cosf(z_theta); + z.imag = z_r * sinf(z_theta); + return z; + } + #endif +#endif + +/* Declarations */ + #if CYTHON_CCOMPLEX + #ifdef __cplusplus + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + return ::std::complex< double >(x, y); + } + #else + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + return x + y*(__pyx_t_double_complex)_Complex_I; + } + #endif +#else + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + __pyx_t_double_complex z; + z.real = x; + z.imag = y; + return z; + } +#endif + +/* Arithmetic */ + #if CYTHON_CCOMPLEX +#else + static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + return (a.real == b.real) && (a.imag == b.imag); + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real + b.real; + z.imag = a.imag + b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real - b.real; + z.imag = a.imag - b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real * b.real - a.imag * b.imag; + z.imag = a.real * b.imag + a.imag * b.real; + return z; + } + #if 1 + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + if (b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real); + } else if (fabs(b.real) >= fabs(b.imag)) { + if (b.real == 0 && b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.imag); + } else { + double r = b.imag / b.real; + double s = 1.0 / (b.real + b.imag * r); + return __pyx_t_double_complex_from_parts( + (a.real + a.imag * r) * s, (a.imag - a.real * r) * s); + } + } else { + double r = b.real / b.imag; + double s = 1.0 / (b.imag + b.real * r); + return __pyx_t_double_complex_from_parts( + (a.real * r + a.imag) * s, (a.imag * r - a.real) * s); + } + } + #else + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + if (b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real); + } else { + double denom = b.real * b.real + b.imag * b.imag; + return __pyx_t_double_complex_from_parts( + (a.real * b.real + a.imag * b.imag) / denom, + (a.imag * b.real - a.real * b.imag) / denom); + } + } + #endif + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex a) { + __pyx_t_double_complex z; + z.real = -a.real; + z.imag = -a.imag; + return z; + } + static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex a) { + return (a.real == 0) && (a.imag == 0); + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex a) { + __pyx_t_double_complex z; + z.real = a.real; + z.imag = -a.imag; + return z; + } + #if 1 + static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex z) { + #if !defined(HAVE_HYPOT) || defined(_MSC_VER) + return sqrt(z.real*z.real + z.imag*z.imag); + #else + return hypot(z.real, z.imag); + #endif + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + double r, lnr, theta, z_r, z_theta; + if (b.imag == 0 && b.real == (int)b.real) { + if (b.real < 0) { + double denom = a.real * a.real + a.imag * a.imag; + a.real = a.real / denom; + a.imag = -a.imag / denom; + b.real = -b.real; + } + switch ((int)b.real) { + case 0: + z.real = 1; + z.imag = 0; + return z; + case 1: + return a; + case 2: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(a, a); + case 3: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(z, a); + case 4: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(z, z); + } + } + if (a.imag == 0) { + if (a.real == 0) { + return a; + } else if (b.imag == 0) { + z.real = pow(a.real, b.real); + z.imag = 0; + return z; + } else if (a.real > 0) { + r = a.real; + theta = 0; + } else { + r = -a.real; + theta = atan2(0, -1); + } + } else { + r = __Pyx_c_abs_double(a); + theta = atan2(a.imag, a.real); + } + lnr = log(r); + z_r = exp(lnr * b.real - theta * b.imag); + z_theta = theta * b.real + lnr * b.imag; + z.real = z_r * cos(z_theta); + z.imag = z_r * sin(z_theta); + return z; + } + #endif +#endif + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + const int neg_one = (int) -1, const_zero = (int) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(int) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(int) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(int) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(int), + little, !is_unsigned); + } +} + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(enum NPY_TYPES) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(enum NPY_TYPES) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(enum NPY_TYPES) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(enum NPY_TYPES), + little, !is_unsigned); + } +} + +/* CIntFromPy */ + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + const int neg_one = (int) -1, const_zero = (int) 0; + const int is_unsigned = neg_one > const_zero; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_Check(x))) { + if (sizeof(int) < sizeof(long)) { + __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x)) + } else { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + goto raise_neg_overflow; + } + return (int) val; + } + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (int) 0; + case 1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0]) + case 2: + if (8 * sizeof(int) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) { + return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + case 3: + if (8 * sizeof(int) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) { + return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + case 4: + if (8 * sizeof(int) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) { + return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + } +#endif +#if CYTHON_COMPILING_IN_CPYTHON + if (unlikely(Py_SIZE(x) < 0)) { + goto raise_neg_overflow; + } +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (int) -1; + if (unlikely(result == 1)) + goto raise_neg_overflow; + } +#endif + if (sizeof(int) <= sizeof(unsigned long)) { + __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) +#endif + } + } else { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (int) 0; + case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0])) + case 1: __PYX_VERIFY_RETURN_INT(int, digit, +digits[0]) + case -2: + if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 2: + if (8 * sizeof(int) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case -3: + if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 3: + if (8 * sizeof(int) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case -4: + if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 4: + if (8 * sizeof(int) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { + return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + } +#endif + if (sizeof(int) <= sizeof(long)) { + __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x)) +#endif + } + } + { +#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) + PyErr_SetString(PyExc_RuntimeError, + "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); +#else + int val; + PyObject *v = __Pyx_PyNumber_IntOrLong(x); + #if PY_MAJOR_VERSION < 3 + if (likely(v) && !PyLong_Check(v)) { + PyObject *tmp = v; + v = PyNumber_Long(tmp); + Py_DECREF(tmp); + } + #endif + if (likely(v)) { + int one = 1; int is_little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&val; + int ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); + Py_DECREF(v); + if (likely(!ret)) + return val; + } +#endif + return (int) -1; + } + } else { + int val; + PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); + if (!tmp) return (int) -1; + val = __Pyx_PyInt_As_int(tmp); + Py_DECREF(tmp); + return val; + } +raise_overflow: + PyErr_SetString(PyExc_OverflowError, + "value too large to convert to int"); + return (int) -1; +raise_neg_overflow: + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to int"); + return (int) -1; +} + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + const long neg_one = (long) -1, const_zero = (long) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(long) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(long) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(long) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(long), + little, !is_unsigned); + } +} + +/* CIntFromPy */ + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + const long neg_one = (long) -1, const_zero = (long) 0; + const int is_unsigned = neg_one > const_zero; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_Check(x))) { + if (sizeof(long) < sizeof(long)) { + __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x)) + } else { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + goto raise_neg_overflow; + } + return (long) val; + } + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (long) 0; + case 1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0]) + case 2: + if (8 * sizeof(long) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) { + return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + case 3: + if (8 * sizeof(long) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) { + return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + case 4: + if (8 * sizeof(long) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) { + return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + } +#endif +#if CYTHON_COMPILING_IN_CPYTHON + if (unlikely(Py_SIZE(x) < 0)) { + goto raise_neg_overflow; + } +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (long) -1; + if (unlikely(result == 1)) + goto raise_neg_overflow; + } +#endif + if (sizeof(long) <= sizeof(unsigned long)) { + __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) +#endif + } + } else { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (long) 0; + case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0])) + case 1: __PYX_VERIFY_RETURN_INT(long, digit, +digits[0]) + case -2: + if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 2: + if (8 * sizeof(long) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case -3: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 3: + if (8 * sizeof(long) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case -4: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 4: + if (8 * sizeof(long) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + } +#endif + if (sizeof(long) <= sizeof(long)) { + __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x)) +#endif + } + } + { +#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) + PyErr_SetString(PyExc_RuntimeError, + "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); +#else + long val; + PyObject *v = __Pyx_PyNumber_IntOrLong(x); + #if PY_MAJOR_VERSION < 3 + if (likely(v) && !PyLong_Check(v)) { + PyObject *tmp = v; + v = PyNumber_Long(tmp); + Py_DECREF(tmp); + } + #endif + if (likely(v)) { + int one = 1; int is_little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&val; + int ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); + Py_DECREF(v); + if (likely(!ret)) + return val; + } +#endif + return (long) -1; + } + } else { + long val; + PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); + if (!tmp) return (long) -1; + val = __Pyx_PyInt_As_long(tmp); + Py_DECREF(tmp); + return val; + } +raise_overflow: + PyErr_SetString(PyExc_OverflowError, + "value too large to convert to long"); + return (long) -1; +raise_neg_overflow: + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to long"); + return (long) -1; +} + +/* CheckBinaryVersion */ + static int __Pyx_check_binary_version(void) { + char ctversion[4], rtversion[4]; + PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); + PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); + if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) { + char message[200]; + PyOS_snprintf(message, sizeof(message), + "compiletime version %s of module '%.100s' " + "does not match runtime version %s", + ctversion, __Pyx_MODULE_NAME, rtversion); + return PyErr_WarnEx(NULL, message, 1); + } + return 0; +} + +/* ModuleImport */ + #ifndef __PYX_HAVE_RT_ImportModule +#define __PYX_HAVE_RT_ImportModule +static PyObject *__Pyx_ImportModule(const char *name) { + PyObject *py_name = 0; + PyObject *py_module = 0; + py_name = __Pyx_PyIdentifier_FromString(name); + if (!py_name) + goto bad; + py_module = PyImport_Import(py_name); + Py_DECREF(py_name); + return py_module; +bad: + Py_XDECREF(py_name); + return 0; +} +#endif + +/* TypeImport */ + #ifndef __PYX_HAVE_RT_ImportType +#define __PYX_HAVE_RT_ImportType +static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, + size_t size, int strict) +{ + PyObject *py_module = 0; + PyObject *result = 0; + PyObject *py_name = 0; + char warning[200]; + Py_ssize_t basicsize; +#ifdef Py_LIMITED_API + PyObject *py_basicsize; +#endif + py_module = __Pyx_ImportModule(module_name); + if (!py_module) + goto bad; + py_name = __Pyx_PyIdentifier_FromString(class_name); + if (!py_name) + goto bad; + result = PyObject_GetAttr(py_module, py_name); + Py_DECREF(py_name); + py_name = 0; + Py_DECREF(py_module); + py_module = 0; + if (!result) + goto bad; + if (!PyType_Check(result)) { + PyErr_Format(PyExc_TypeError, + "%.200s.%.200s is not a type object", + module_name, class_name); + goto bad; + } +#ifndef Py_LIMITED_API + basicsize = ((PyTypeObject *)result)->tp_basicsize; +#else + py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); + if (!py_basicsize) + goto bad; + basicsize = PyLong_AsSsize_t(py_basicsize); + Py_DECREF(py_basicsize); + py_basicsize = 0; + if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) + goto bad; +#endif + if (!strict && (size_t)basicsize > size) { + PyOS_snprintf(warning, sizeof(warning), + "%s.%s size changed, may indicate binary incompatibility. Expected %zd, got %zd", + module_name, class_name, basicsize, size); + if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; + } + else if ((size_t)basicsize != size) { + PyErr_Format(PyExc_ValueError, + "%.200s.%.200s has the wrong size, try recompiling. Expected %zd, got %zd", + module_name, class_name, basicsize, size); + goto bad; + } + return (PyTypeObject *)result; +bad: + Py_XDECREF(py_module); + Py_XDECREF(result); + return NULL; +} +#endif + +/* InitStrings */ + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + while (t->p) { + #if PY_MAJOR_VERSION < 3 + if (t->is_unicode) { + *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); + } else if (t->intern) { + *t->p = PyString_InternFromString(t->s); + } else { + *t->p = PyString_FromStringAndSize(t->s, t->n - 1); + } + #else + if (t->is_unicode | t->is_str) { + if (t->intern) { + *t->p = PyUnicode_InternFromString(t->s); + } else if (t->encoding) { + *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); + } else { + *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); + } + } else { + *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); + } + #endif + if (!*t->p) + return -1; + if (PyObject_Hash(*t->p) == -1) + PyErr_Clear(); + ++t; + } + return 0; +} + +static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { + return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); +} +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { + Py_ssize_t ignore; + return __Pyx_PyObject_AsStringAndSize(o, &ignore); +} +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { +#if CYTHON_COMPILING_IN_CPYTHON && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) + if ( +#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + __Pyx_sys_getdefaultencoding_not_ascii && +#endif + PyUnicode_Check(o)) { +#if PY_VERSION_HEX < 0x03030000 + char* defenc_c; + PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); + if (!defenc) return NULL; + defenc_c = PyBytes_AS_STRING(defenc); +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + { + char* end = defenc_c + PyBytes_GET_SIZE(defenc); + char* c; + for (c = defenc_c; c < end; c++) { + if ((unsigned char) (*c) >= 128) { + PyUnicode_AsASCIIString(o); + return NULL; + } + } + } +#endif + *length = PyBytes_GET_SIZE(defenc); + return defenc_c; +#else + if (__Pyx_PyUnicode_READY(o) == -1) return NULL; +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + if (PyUnicode_IS_ASCII(o)) { + *length = PyUnicode_GET_LENGTH(o); + return PyUnicode_AsUTF8(o); + } else { + PyUnicode_AsASCIIString(o); + return NULL; + } +#else + return PyUnicode_AsUTF8AndSize(o, length); +#endif +#endif + } else +#endif +#if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE)) + if (PyByteArray_Check(o)) { + *length = PyByteArray_GET_SIZE(o); + return PyByteArray_AS_STRING(o); + } else +#endif + { + char* result; + int r = PyBytes_AsStringAndSize(o, &result, length); + if (unlikely(r < 0)) { + return NULL; + } else { + return result; + } + } +} +static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { + int is_true = x == Py_True; + if (is_true | (x == Py_False) | (x == Py_None)) return is_true; + else return PyObject_IsTrue(x); +} +static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) { +#if CYTHON_USE_TYPE_SLOTS + PyNumberMethods *m; +#endif + const char *name = NULL; + PyObject *res = NULL; +#if PY_MAJOR_VERSION < 3 + if (PyInt_Check(x) || PyLong_Check(x)) +#else + if (PyLong_Check(x)) +#endif + return __Pyx_NewRef(x); +#if CYTHON_USE_TYPE_SLOTS + m = Py_TYPE(x)->tp_as_number; + #if PY_MAJOR_VERSION < 3 + if (m && m->nb_int) { + name = "int"; + res = PyNumber_Int(x); + } + else if (m && m->nb_long) { + name = "long"; + res = PyNumber_Long(x); + } + #else + if (m && m->nb_int) { + name = "int"; + res = PyNumber_Long(x); + } + #endif +#else + res = PyNumber_Int(x); +#endif + if (res) { +#if PY_MAJOR_VERSION < 3 + if (!PyInt_Check(res) && !PyLong_Check(res)) { +#else + if (!PyLong_Check(res)) { +#endif + PyErr_Format(PyExc_TypeError, + "__%.4s__ returned non-%.4s (type %.200s)", + name, name, Py_TYPE(res)->tp_name); + Py_DECREF(res); + return NULL; + } + } + else if (!PyErr_Occurred()) { + PyErr_SetString(PyExc_TypeError, + "an integer is required"); + } + return res; +} +static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { + Py_ssize_t ival; + PyObject *x; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(b))) { + if (sizeof(Py_ssize_t) >= sizeof(long)) + return PyInt_AS_LONG(b); + else + return PyInt_AsSsize_t(x); + } +#endif + if (likely(PyLong_CheckExact(b))) { + #if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)b)->ob_digit; + const Py_ssize_t size = Py_SIZE(b); + if (likely(__Pyx_sst_abs(size) <= 1)) { + ival = likely(size) ? digits[0] : 0; + if (size == -1) ival = -ival; + return ival; + } else { + switch (size) { + case 2: + if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { + return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -2: + if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case 3: + if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { + return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -3: + if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case 4: + if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { + return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -4: + if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + } + } + #endif + return PyLong_AsSsize_t(b); + } + x = PyNumber_Index(b); + if (!x) return -1; + ival = PyInt_AsSsize_t(x); + Py_DECREF(x); + return ival; +} +static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { + return PyInt_FromSize_t(ival); +} + + +#endif /* Py_PYTHON_H */ diff --git a/ccd/models/robust_fit.c b/ccd/models/robust_fit.c new file mode 100644 index 0000000..4aa47ae --- /dev/null +++ b/ccd/models/robust_fit.c @@ -0,0 +1,13718 @@ +/* Generated by Cython 0.26 */ + +/* BEGIN: Cython Metadata +{ + "distutils": { + "depends": [ + "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h", + "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h" + ], + "include_dirs": [ + "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include" + ], + "name": "ccd.models.robust_fit", + "sources": [ + "ccd/models/robust_fit.pyx" + ] + }, + "module_name": "ccd.models.robust_fit" +} +END: Cython Metadata */ + +#define PY_SSIZE_T_CLEAN +#include "Python.h" +#ifndef Py_PYTHON_H + #error Python headers needed to compile C extensions, please install development version of Python. +#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) + #error Cython requires Python 2.6+ or Python 3.2+. +#else +#define CYTHON_ABI "0_26" +#include +#ifndef offsetof + #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) +#endif +#if !defined(WIN32) && !defined(MS_WINDOWS) + #ifndef __stdcall + #define __stdcall + #endif + #ifndef __cdecl + #define __cdecl + #endif + #ifndef __fastcall + #define __fastcall + #endif +#endif +#ifndef DL_IMPORT + #define DL_IMPORT(t) t +#endif +#ifndef DL_EXPORT + #define DL_EXPORT(t) t +#endif +#define __PYX_COMMA , +#ifndef HAVE_LONG_LONG + #if PY_VERSION_HEX >= 0x03030000 || (PY_MAJOR_VERSION == 2 && PY_VERSION_HEX >= 0x02070000) + #define HAVE_LONG_LONG + #endif +#endif +#ifndef PY_LONG_LONG + #define PY_LONG_LONG LONG_LONG +#endif +#ifndef Py_HUGE_VAL + #define Py_HUGE_VAL HUGE_VAL +#endif +#ifdef PYPY_VERSION + #define CYTHON_COMPILING_IN_PYPY 1 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #undef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 0 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #undef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #undef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 1 + #undef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 0 + #undef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 0 + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 +#elif defined(PYSTON_VERSION) + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 1 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 +#else + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 1 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #if PY_MAJOR_VERSION < 3 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #elif !defined(CYTHON_USE_ASYNC_SLOTS) + #define CYTHON_USE_ASYNC_SLOTS 1 + #endif + #if PY_VERSION_HEX < 0x02070000 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #elif !defined(CYTHON_USE_PYLONG_INTERNALS) + #define CYTHON_USE_PYLONG_INTERNALS 1 + #endif + #ifndef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 1 + #endif + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #if PY_VERSION_HEX < 0x030300F0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #elif !defined(CYTHON_USE_UNICODE_WRITER) + #define CYTHON_USE_UNICODE_WRITER 1 + #endif + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #ifndef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 1 + #endif + #ifndef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 1 + #endif +#endif +#if !defined(CYTHON_FAST_PYCCALL) +#define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1) +#endif +#if CYTHON_USE_PYLONG_INTERNALS + #include "longintrepr.h" + #undef SHIFT + #undef BASE + #undef MASK +#endif +#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag) + #define Py_OptimizeFlag 0 +#endif +#define __PYX_BUILD_PY_SSIZE_T "n" +#define CYTHON_FORMAT_SSIZE_T "z" +#if PY_MAJOR_VERSION < 3 + #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ + PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) + #define __Pyx_DefaultClassType PyClass_Type +#else + #define __Pyx_BUILTIN_MODULE_NAME "builtins" + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ + PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) + #define __Pyx_DefaultClassType PyType_Type +#endif +#ifndef Py_TPFLAGS_CHECKTYPES + #define Py_TPFLAGS_CHECKTYPES 0 +#endif +#ifndef Py_TPFLAGS_HAVE_INDEX + #define Py_TPFLAGS_HAVE_INDEX 0 +#endif +#ifndef Py_TPFLAGS_HAVE_NEWBUFFER + #define Py_TPFLAGS_HAVE_NEWBUFFER 0 +#endif +#ifndef Py_TPFLAGS_HAVE_FINALIZE + #define Py_TPFLAGS_HAVE_FINALIZE 0 +#endif +#if PY_VERSION_HEX < 0x030700A0 || !defined(METH_FASTCALL) + #ifndef METH_FASTCALL + #define METH_FASTCALL 0x80 + #endif + typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, Py_ssize_t nargs); + typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject **args, + Py_ssize_t nargs, PyObject *kwnames); +#else + #define __Pyx_PyCFunctionFast _PyCFunctionFast + #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords +#endif +#if CYTHON_FAST_PYCCALL +#define __Pyx_PyFastCFunction_Check(func)\ + ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))))) +#else +#define __Pyx_PyFastCFunction_Check(func) 0 +#endif +#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) + #define CYTHON_PEP393_ENABLED 1 + #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\ + 0 : _PyUnicode_Ready((PyObject *)(op))) + #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) + #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u) + #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u) + #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) + #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u))) +#else + #define CYTHON_PEP393_ENABLED 0 + #define PyUnicode_1BYTE_KIND 1 + #define PyUnicode_2BYTE_KIND 2 + #define PyUnicode_4BYTE_KIND 4 + #define __Pyx_PyUnicode_READY(op) (0) + #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) + #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111) + #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE)) + #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) + #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u)) +#endif +#if CYTHON_COMPILING_IN_PYPY + #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) + #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) +#else + #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) + #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ + PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains) + #define PyUnicode_Contains(u, s) PySequence_Contains(u, s) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check) + #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format) + #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc) + #define PyObject_Malloc(s) PyMem_Malloc(s) + #define PyObject_Free(p) PyMem_Free(p) + #define PyObject_Realloc(p) PyMem_Realloc(p) +#endif +#if CYTHON_COMPILING_IN_PYSTON + #define __Pyx_PyCode_HasFreeVars(co) PyCode_HasFreeVars(co) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno) +#else + #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno) +#endif +#define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) +#define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) +#else + #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) +#endif +#if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII) + #define PyObject_ASCII(o) PyObject_Repr(o) +#endif +#if PY_MAJOR_VERSION >= 3 + #define PyBaseString_Type PyUnicode_Type + #define PyStringObject PyUnicodeObject + #define PyString_Type PyUnicode_Type + #define PyString_Check PyUnicode_Check + #define PyString_CheckExact PyUnicode_CheckExact +#endif +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) + #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj) +#else + #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj)) + #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) +#endif +#ifndef PySet_CheckExact + #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) +#endif +#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) +#define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception) +#if PY_MAJOR_VERSION >= 3 + #define PyIntObject PyLongObject + #define PyInt_Type PyLong_Type + #define PyInt_Check(op) PyLong_Check(op) + #define PyInt_CheckExact(op) PyLong_CheckExact(op) + #define PyInt_FromString PyLong_FromString + #define PyInt_FromUnicode PyLong_FromUnicode + #define PyInt_FromLong PyLong_FromLong + #define PyInt_FromSize_t PyLong_FromSize_t + #define PyInt_FromSsize_t PyLong_FromSsize_t + #define PyInt_AsLong PyLong_AsLong + #define PyInt_AS_LONG PyLong_AS_LONG + #define PyInt_AsSsize_t PyLong_AsSsize_t + #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask + #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask + #define PyNumber_Int PyNumber_Long +#endif +#if PY_MAJOR_VERSION >= 3 + #define PyBoolObject PyLongObject +#endif +#if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY + #ifndef PyUnicode_InternFromString + #define PyUnicode_InternFromString(s) PyUnicode_FromString(s) + #endif +#endif +#if PY_VERSION_HEX < 0x030200A4 + typedef long Py_hash_t; + #define __Pyx_PyInt_FromHash_t PyInt_FromLong + #define __Pyx_PyInt_AsHash_t PyInt_AsLong +#else + #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t + #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t +#endif +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func)) +#else + #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) +#endif +#ifndef __has_attribute + #define __has_attribute(x) 0 +#endif +#ifndef __has_cpp_attribute + #define __has_cpp_attribute(x) 0 +#endif +#if CYTHON_USE_ASYNC_SLOTS + #if PY_VERSION_HEX >= 0x030500B1 + #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods + #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async) + #else + typedef struct { + unaryfunc am_await; + unaryfunc am_aiter; + unaryfunc am_anext; + } __Pyx_PyAsyncMethodsStruct; + #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved)) + #endif +#else + #define __Pyx_PyType_AsAsync(obj) NULL +#endif +#ifndef CYTHON_RESTRICT + #if defined(__GNUC__) + #define CYTHON_RESTRICT __restrict__ + #elif defined(_MSC_VER) && _MSC_VER >= 1400 + #define CYTHON_RESTRICT __restrict + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_RESTRICT restrict + #else + #define CYTHON_RESTRICT + #endif +#endif +#ifndef CYTHON_UNUSED +# if defined(__GNUC__) +# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +#endif +#ifndef CYTHON_MAYBE_UNUSED_VAR +# if defined(__cplusplus) + template void CYTHON_MAYBE_UNUSED_VAR( const T& ) { } +# else +# define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x) +# endif +#endif +#ifndef CYTHON_NCP_UNUSED +# if CYTHON_COMPILING_IN_CPYTHON +# define CYTHON_NCP_UNUSED +# else +# define CYTHON_NCP_UNUSED CYTHON_UNUSED +# endif +#endif +#define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) +#ifdef _MSC_VER + #ifndef _MSC_STDINT_H_ + #if _MSC_VER < 1300 + typedef unsigned char uint8_t; + typedef unsigned int uint32_t; + #else + typedef unsigned __int8 uint8_t; + typedef unsigned __int32 uint32_t; + #endif + #endif +#else + #include +#endif +#ifndef CYTHON_FALLTHROUGH + #ifdef __cplusplus + #if __has_cpp_attribute(fallthrough) + #define CYTHON_FALLTHROUGH [[fallthrough]] + #elif __has_cpp_attribute(clang::fallthrough) + #define CYTHON_FALLTHROUGH [[clang::fallthrough]] + #endif + #endif + #ifndef CYTHON_FALLTHROUGH + #if __has_attribute(fallthrough) || (defined(__GNUC__) && defined(__attribute__)) + #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) + #else + #define CYTHON_FALLTHROUGH + #endif + #endif +#endif + +#ifndef CYTHON_INLINE + #if defined(__clang__) + #define CYTHON_INLINE __inline__ __attribute__ ((__unused__)) + #elif defined(__GNUC__) + #define CYTHON_INLINE __inline__ + #elif defined(_MSC_VER) + #define CYTHON_INLINE __inline + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_INLINE inline + #else + #define CYTHON_INLINE + #endif +#endif + +#if defined(WIN32) || defined(MS_WINDOWS) + #define _USE_MATH_DEFINES +#endif +#include +#ifdef NAN +#define __PYX_NAN() ((float) NAN) +#else +static CYTHON_INLINE float __PYX_NAN() { + float value; + memset(&value, 0xFF, sizeof(value)); + return value; +} +#endif +#if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL) +#define __Pyx_truncl trunc +#else +#define __Pyx_truncl truncl +#endif + + +#define __PYX_ERR(f_index, lineno, Ln_error) \ +{ \ + __pyx_filename = __pyx_f[f_index]; __pyx_lineno = lineno; __pyx_clineno = __LINE__; goto Ln_error; \ +} + +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) +#else + #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) +#endif + +#ifndef __PYX_EXTERN_C + #ifdef __cplusplus + #define __PYX_EXTERN_C extern "C" + #else + #define __PYX_EXTERN_C extern + #endif +#endif + +#define __PYX_HAVE__ccd__models__robust_fit +#define __PYX_HAVE_API__ccd__models__robust_fit +#include +#include +#include +#include "numpy/arrayobject.h" +#include "numpy/ufuncobject.h" +#include "pythread.h" +#ifdef _OPENMP +#include +#endif /* _OPENMP */ + +#ifdef PYREX_WITHOUT_ASSERTIONS +#define CYTHON_WITHOUT_ASSERTIONS +#endif + +typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding; + const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; + +#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 +#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0 +#define __PYX_DEFAULT_STRING_ENCODING "" +#define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString +#define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize +#define __Pyx_uchar_cast(c) ((unsigned char)c) +#define __Pyx_long_cast(x) ((long)x) +#define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\ + (sizeof(type) < sizeof(Py_ssize_t)) ||\ + (sizeof(type) > sizeof(Py_ssize_t) &&\ + likely(v < (type)PY_SSIZE_T_MAX ||\ + v == (type)PY_SSIZE_T_MAX) &&\ + (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\ + v == (type)PY_SSIZE_T_MIN))) ||\ + (sizeof(type) == sizeof(Py_ssize_t) &&\ + (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\ + v == (type)PY_SSIZE_T_MAX))) ) +#if defined (__cplusplus) && __cplusplus >= 201103L + #include + #define __Pyx_sst_abs(value) std::abs(value) +#elif SIZEOF_INT >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) abs(value) +#elif SIZEOF_LONG >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) labs(value) +#elif defined (_MSC_VER) && defined (_M_X64) + #define __Pyx_sst_abs(value) _abs64(value) +#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define __Pyx_sst_abs(value) llabs(value) +#elif defined (__GNUC__) + #define __Pyx_sst_abs(value) __builtin_llabs(value) +#else + #define __Pyx_sst_abs(value) ((value<0) ? -value : value) +#endif +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); +#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) +#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) +#define __Pyx_PyBytes_FromString PyBytes_FromString +#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize +static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); +#if PY_MAJOR_VERSION < 3 + #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString + #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize +#else + #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString + #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize +#endif +#define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) +#define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) +#define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) +#define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s) +#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s) +#if PY_MAJOR_VERSION < 3 +static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) +{ + const Py_UNICODE *u_end = u; + while (*u_end++) ; + return (size_t)(u_end - u - 1); +} +#else +#define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen +#endif +#define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) +#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode +#define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode +#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj) +#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None) +#define __Pyx_PyBool_FromLong(b) ((b) ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False)) +static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); +static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x); +static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); +static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); +#if CYTHON_ASSUME_SAFE_MACROS +#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) +#else +#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) +#endif +#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) +#if PY_MAJOR_VERSION >= 3 +#define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x)) +#else +#define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x)) +#endif +#define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x)) +#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII +static int __Pyx_sys_getdefaultencoding_not_ascii; +static int __Pyx_init_sys_getdefaultencoding_params(void) { + PyObject* sys; + PyObject* default_encoding = NULL; + PyObject* ascii_chars_u = NULL; + PyObject* ascii_chars_b = NULL; + const char* default_encoding_c; + sys = PyImport_ImportModule("sys"); + if (!sys) goto bad; + default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL); + Py_DECREF(sys); + if (!default_encoding) goto bad; + default_encoding_c = PyBytes_AsString(default_encoding); + if (!default_encoding_c) goto bad; + if (strcmp(default_encoding_c, "ascii") == 0) { + __Pyx_sys_getdefaultencoding_not_ascii = 0; + } else { + char ascii_chars[128]; + int c; + for (c = 0; c < 128; c++) { + ascii_chars[c] = c; + } + __Pyx_sys_getdefaultencoding_not_ascii = 1; + ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); + if (!ascii_chars_u) goto bad; + ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); + if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { + PyErr_Format( + PyExc_ValueError, + "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", + default_encoding_c); + goto bad; + } + Py_DECREF(ascii_chars_u); + Py_DECREF(ascii_chars_b); + } + Py_DECREF(default_encoding); + return 0; +bad: + Py_XDECREF(default_encoding); + Py_XDECREF(ascii_chars_u); + Py_XDECREF(ascii_chars_b); + return -1; +} +#endif +#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 +#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) +#else +#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) +#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT +static char* __PYX_DEFAULT_STRING_ENCODING; +static int __Pyx_init_sys_getdefaultencoding_params(void) { + PyObject* sys; + PyObject* default_encoding = NULL; + char* default_encoding_c; + sys = PyImport_ImportModule("sys"); + if (!sys) goto bad; + default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); + Py_DECREF(sys); + if (!default_encoding) goto bad; + default_encoding_c = PyBytes_AsString(default_encoding); + if (!default_encoding_c) goto bad; + __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c)); + if (!__PYX_DEFAULT_STRING_ENCODING) goto bad; + strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); + Py_DECREF(default_encoding); + return 0; +bad: + Py_XDECREF(default_encoding); + return -1; +} +#endif +#endif + + +/* Test for GCC > 2.95 */ +#if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))) + #define likely(x) __builtin_expect(!!(x), 1) + #define unlikely(x) __builtin_expect(!!(x), 0) +#else /* !__GNUC__ or GCC < 2.95 */ + #define likely(x) (x) + #define unlikely(x) (x) +#endif /* __GNUC__ */ +static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } + +static PyObject *__pyx_m; +static PyObject *__pyx_d; +static PyObject *__pyx_b; +static PyObject *__pyx_cython_runtime; +static PyObject *__pyx_empty_tuple; +static PyObject *__pyx_empty_bytes; +static PyObject *__pyx_empty_unicode; +static int __pyx_lineno; +static int __pyx_clineno = 0; +static const char * __pyx_cfilenm= __FILE__; +static const char *__pyx_filename; + +/* Header.proto */ +#if !defined(CYTHON_CCOMPLEX) + #if defined(__cplusplus) + #define CYTHON_CCOMPLEX 1 + #elif defined(_Complex_I) + #define CYTHON_CCOMPLEX 1 + #else + #define CYTHON_CCOMPLEX 0 + #endif +#endif +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + #include + #else + #include + #endif +#endif +#if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__) + #undef _Complex_I + #define _Complex_I 1.0fj +#endif + + +static const char *__pyx_f[] = { + "ccd/models/robust_fit.pyx", + "stringsource", + "__init__.pxd", + "type.pxd", + "bool.pxd", + "complex.pxd", +}; +/* BufferFormatStructs.proto */ +#define IS_UNSIGNED(type) (((type) -1) > 0) +struct __Pyx_StructField_; +#define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0) +typedef struct { + const char* name; + struct __Pyx_StructField_* fields; + size_t size; + size_t arraysize[8]; + int ndim; + char typegroup; + char is_unsigned; + int flags; +} __Pyx_TypeInfo; +typedef struct __Pyx_StructField_ { + __Pyx_TypeInfo* type; + const char* name; + size_t offset; +} __Pyx_StructField; +typedef struct { + __Pyx_StructField* field; + size_t parent_offset; +} __Pyx_BufFmt_StackElem; +typedef struct { + __Pyx_StructField root; + __Pyx_BufFmt_StackElem* head; + size_t fmt_offset; + size_t new_count, enc_count; + size_t struct_alignment; + int is_complex; + char enc_type; + char new_packmode; + char enc_packmode; + char is_valid_array; +} __Pyx_BufFmt_Context; + + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":725 + * # in Cython to enable them only on the right systems. + * + * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t + */ +typedef npy_int8 __pyx_t_5numpy_int8_t; 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r = NULL; __Pyx_DECREF(tmp);}} while(0) + +/* Profile.proto */ +#ifndef CYTHON_PROFILE +#if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_PYSTON + #define CYTHON_PROFILE 0 +#else + #define CYTHON_PROFILE 1 +#endif +#endif +#ifndef CYTHON_TRACE_NOGIL + #define CYTHON_TRACE_NOGIL 0 +#else + #if CYTHON_TRACE_NOGIL && !defined(CYTHON_TRACE) + #define CYTHON_TRACE 1 + #endif +#endif +#ifndef CYTHON_TRACE + #define CYTHON_TRACE 0 +#endif +#if CYTHON_TRACE + #undef CYTHON_PROFILE_REUSE_FRAME +#endif +#ifndef CYTHON_PROFILE_REUSE_FRAME + #define CYTHON_PROFILE_REUSE_FRAME 0 +#endif +#if CYTHON_PROFILE || CYTHON_TRACE + #include "compile.h" + #include "frameobject.h" + #include "traceback.h" + #if CYTHON_PROFILE_REUSE_FRAME + #define CYTHON_FRAME_MODIFIER static + #define CYTHON_FRAME_DEL(frame) + #else + #define CYTHON_FRAME_MODIFIER + #define CYTHON_FRAME_DEL(frame) Py_CLEAR(frame) + #endif + #define __Pyx_TraceDeclarations\ + static PyCodeObject *__pyx_frame_code = NULL;\ + CYTHON_FRAME_MODIFIER PyFrameObject *__pyx_frame = NULL;\ + int __Pyx_use_tracing = 0; + #define __Pyx_TraceFrameInit(codeobj)\ + if (codeobj) __pyx_frame_code = (PyCodeObject*) codeobj; + #ifdef WITH_THREAD + #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ + if (nogil) {\ + if (CYTHON_TRACE_NOGIL) {\ + PyThreadState *tstate;\ + PyGILState_STATE state = PyGILState_Ensure();\ + tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing) && !tstate->tracing &&\ + (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ + __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, funcname, srcfile, firstlineno);\ + }\ + PyGILState_Release(state);\ + if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ + }\ + } else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing) && !tstate->tracing &&\ + (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ + __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, funcname, srcfile, firstlineno);\ + if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ + }\ + } + #else + #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ + { PyThreadState* tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing) && !tstate->tracing &&\ + (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ + __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, funcname, srcfile, firstlineno);\ + if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ + }\ + } + #endif + #define __Pyx_TraceException()\ + if (likely(!__Pyx_use_tracing)); else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (tstate->use_tracing &&\ + (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ + tstate->tracing++;\ + tstate->use_tracing = 0;\ + PyObject *exc_info = __Pyx_GetExceptionTuple(tstate);\ + if (exc_info) {\ + if (CYTHON_TRACE && tstate->c_tracefunc)\ + tstate->c_tracefunc(\ + tstate->c_traceobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ + tstate->c_profilefunc(\ + tstate->c_profileobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ + Py_DECREF(exc_info);\ + }\ + tstate->use_tracing = 1;\ + tstate->tracing--;\ + }\ + } + static void __Pyx_call_return_trace_func(PyThreadState *tstate, PyFrameObject *frame, PyObject *result) { + PyObject *type, *value, *traceback; + PyErr_Fetch(&type, &value, &traceback); + tstate->tracing++; + tstate->use_tracing = 0; + if (CYTHON_TRACE && tstate->c_tracefunc) + tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_RETURN, result); + if (tstate->c_profilefunc) + tstate->c_profilefunc(tstate->c_profileobj, frame, PyTrace_RETURN, result); + CYTHON_FRAME_DEL(frame); + tstate->use_tracing = 1; + tstate->tracing--; + PyErr_Restore(type, value, traceback); + } + #ifdef WITH_THREAD + #define __Pyx_TraceReturn(result, nogil)\ + if (likely(!__Pyx_use_tracing)); else {\ + if (nogil) {\ + if (CYTHON_TRACE_NOGIL) {\ + PyThreadState *tstate;\ + PyGILState_STATE state = PyGILState_Ensure();\ + tstate = PyThreadState_GET();\ + if (tstate->use_tracing) {\ + __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ + }\ + PyGILState_Release(state);\ + }\ + } else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (tstate->use_tracing) {\ + __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ + }\ + }\ + } + #else + #define __Pyx_TraceReturn(result, nogil)\ + if (likely(!__Pyx_use_tracing)); else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (tstate->use_tracing) {\ + __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ + }\ + } + #endif + static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno); + static int __Pyx_TraceSetupAndCall(PyCodeObject** code, PyFrameObject** frame, const char *funcname, const char *srcfile, int firstlineno); +#else + #define __Pyx_TraceDeclarations + #define __Pyx_TraceFrameInit(codeobj) + #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if ((1)); else goto_error; + #define __Pyx_TraceException() + #define __Pyx_TraceReturn(result, nogil) +#endif +#if CYTHON_TRACE + static int __Pyx_call_line_trace_func(PyThreadState *tstate, PyFrameObject *frame, int lineno) { + int ret; + PyObject *type, *value, *traceback; + PyErr_Fetch(&type, &value, &traceback); + __Pyx_PyFrame_SetLineNumber(frame, lineno); + tstate->tracing++; + tstate->use_tracing = 0; + ret = tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_LINE, NULL); + tstate->use_tracing = 1; + tstate->tracing--; + if (likely(!ret)) { + PyErr_Restore(type, value, traceback); + } else { + Py_XDECREF(type); + Py_XDECREF(value); + Py_XDECREF(traceback); + } + return ret; + } + #ifdef WITH_THREAD + #define __Pyx_TraceLine(lineno, nogil, goto_error)\ + if (likely(!__Pyx_use_tracing)); else {\ + if (nogil) {\ + if (CYTHON_TRACE_NOGIL) {\ + int ret = 0;\ + PyThreadState *tstate;\ + PyGILState_STATE state = PyGILState_Ensure();\ + tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing && tstate->c_tracefunc)) {\ + ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ + }\ + PyGILState_Release(state);\ + if (unlikely(ret)) goto_error;\ + }\ + } else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing && tstate->c_tracefunc)) {\ + int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ + if (unlikely(ret)) goto_error;\ + }\ + }\ + } + #else + #define __Pyx_TraceLine(lineno, nogil, goto_error)\ + if (likely(!__Pyx_use_tracing)); else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing && tstate->c_tracefunc)) {\ + int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ + if (unlikely(ret)) goto_error;\ + }\ + } + #endif +#else + #define __Pyx_TraceLine(lineno, nogil, goto_error) if ((1)); else goto_error; +#endif + +/* BufferFormatCheck.proto */ +static CYTHON_INLINE int __Pyx_GetBufferAndValidate(Py_buffer* buf, PyObject* obj, + __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack); +static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info); +static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts); +static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, + __Pyx_BufFmt_StackElem* stack, + __Pyx_TypeInfo* type); + +/* PyObjectGetAttrStr.proto */ +#if CYTHON_USE_TYPE_SLOTS +static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { + PyTypeObject* tp = Py_TYPE(obj); + if (likely(tp->tp_getattro)) + return tp->tp_getattro(obj, attr_name); +#if PY_MAJOR_VERSION < 3 + if (likely(tp->tp_getattr)) + return tp->tp_getattr(obj, PyString_AS_STRING(attr_name)); +#endif + return PyObject_GetAttr(obj, attr_name); +} +#else +#define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n) +#endif + +/* GetBuiltinName.proto */ +static PyObject *__Pyx_GetBuiltinName(PyObject *name); + +/* GetModuleGlobalName.proto */ +static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name); + +/* PyCFunctionFastCall.proto */ +#if CYTHON_FAST_PYCCALL +static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs); +#else +#define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL) +#endif + +/* PyFunctionFastCall.proto */ +#if CYTHON_FAST_PYCALL +#define __Pyx_PyFunction_FastCall(func, args, nargs)\ + __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL) +#if 1 || PY_VERSION_HEX < 0x030600B1 +static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs); +#else +#define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs) +#endif +#endif + +/* PyObjectCall.proto */ +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw); +#else +#define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) +#endif + +/* PyObjectCallMethO.proto */ +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); +#endif + +/* PyObjectCallOneArg.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); + +/* ExtTypeTest.proto */ +static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); + +/* PyIntBinop.proto */ +#if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_SubtractCObj(PyObject *op1, PyObject *op2, long intval, int inplace); +#else +#define __Pyx_PyInt_SubtractCObj(op1, op2, intval, inplace)\ + (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2)) +#endif + +/* PyThreadStateGet.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate; +#define __Pyx_PyThreadState_assign __pyx_tstate = PyThreadState_GET(); +#else +#define __Pyx_PyThreadState_declare +#define __Pyx_PyThreadState_assign +#endif + +/* PyErrFetchRestore.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else +#define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) +#endif + +/* SliceObject.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice( + PyObject* obj, Py_ssize_t cstart, Py_ssize_t cstop, + PyObject** py_start, PyObject** py_stop, PyObject** py_slice, + int has_cstart, int has_cstop, int wraparound); + +/* WriteUnraisableException.proto */ +static void __Pyx_WriteUnraisable(const char *name, int clineno, + int lineno, const char *filename, + int full_traceback, int nogil); + +/* GetItemInt.proto */ +#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\ + (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\ + __Pyx_GetItemInt_Generic(o, to_py_func(i)))) +#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ + (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, + int wraparound, int boundscheck); +#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ + (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, + int wraparound, int boundscheck); +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, + int is_list, int wraparound, int boundscheck); + +/* RaiseDoubleKeywords.proto */ +static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); + +/* ParseKeywords.proto */ +static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ + PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\ + const char* function_name); + +/* RaiseArgTupleInvalid.proto */ +static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, + Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); + +/* RaiseTooManyValuesToUnpack.proto */ +static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); + +/* RaiseNeedMoreValuesToUnpack.proto */ +static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); + +/* IterFinish.proto */ +static CYTHON_INLINE int __Pyx_IterFinish(void); + +/* UnpackItemEndCheck.proto */ +static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); + +/* PyObjectCallNoArg.proto */ +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func); +#else +#define __Pyx_PyObject_CallNoArg(func) __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL) +#endif + +/* ArgTypeTest.proto */ +static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, + const char *name, int exact); + +/* GetAttr.proto */ +static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *, PyObject *); + +/* GetAttr3.proto */ +static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *, PyObject *, PyObject *); + +/* Import.proto */ +static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); + +/* ImportFrom.proto */ +static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); + +/* RaiseException.proto */ +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); + +/* HasAttr.proto */ +static CYTHON_INLINE int __Pyx_HasAttr(PyObject *, PyObject *); + +/* DictGetItem.proto */ +#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY +static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { + PyObject *value; + value = PyDict_GetItemWithError(d, key); + if (unlikely(!value)) { + if (!PyErr_Occurred()) { + PyObject* args = PyTuple_Pack(1, key); + if (likely(args)) + PyErr_SetObject(PyExc_KeyError, args); + Py_XDECREF(args); + } + return NULL; + } + Py_INCREF(value); + return value; +} +#else + #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) +#endif + +/* RaiseNoneIterError.proto */ +static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); + +/* SaveResetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +#else +#define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb) +#define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb) +#endif + +/* PyErrExceptionMatches.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err) +static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err); +#else +#define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err) +#endif + +/* GetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb) +static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else +static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); +#endif + +/* SetVTable.proto */ +static int __Pyx_SetVtable(PyObject *dict, void *vtable); + +/* SetupReduce.proto */ +static int __Pyx_setup_reduce(PyObject* type_obj); + +/* CLineInTraceback.proto */ +static int __Pyx_CLineForTraceback(int c_line); + +/* CodeObjectCache.proto */ +typedef struct { + PyCodeObject* code_object; + int code_line; +} __Pyx_CodeObjectCacheEntry; +struct __Pyx_CodeObjectCache { + int count; + int max_count; + __Pyx_CodeObjectCacheEntry* entries; +}; +static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL}; +static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); +static PyCodeObject *__pyx_find_code_object(int code_line); +static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); + +/* AddTraceback.proto */ +static void __Pyx_AddTraceback(const char *funcname, int c_line, + int py_line, const char *filename); + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); + +/* BufferStructDeclare.proto */ +typedef struct { + Py_ssize_t shape, strides, suboffsets; +} __Pyx_Buf_DimInfo; +typedef struct { + size_t refcount; + Py_buffer pybuffer; +} __Pyx_Buffer; +typedef struct { + __Pyx_Buffer *rcbuffer; + char *data; + __Pyx_Buf_DimInfo diminfo[8]; +} __Pyx_LocalBuf_ND; + +#if PY_MAJOR_VERSION < 3 + static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags); + static void __Pyx_ReleaseBuffer(Py_buffer *view); +#else + #define __Pyx_GetBuffer PyObject_GetBuffer + #define __Pyx_ReleaseBuffer PyBuffer_Release +#endif + + +/* None.proto */ +static Py_ssize_t __Pyx_zeros[] = {0, 0, 0, 0, 0, 0, 0, 0}; +static Py_ssize_t __Pyx_minusones[] = {-1, -1, -1, -1, -1, -1, -1, -1}; + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value); + +/* RealImag.proto */ +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + #define __Pyx_CREAL(z) ((z).real()) + #define __Pyx_CIMAG(z) ((z).imag()) + #else + #define __Pyx_CREAL(z) (__real__(z)) + #define __Pyx_CIMAG(z) (__imag__(z)) + #endif +#else + #define __Pyx_CREAL(z) ((z).real) + #define __Pyx_CIMAG(z) ((z).imag) +#endif +#if defined(__cplusplus) && CYTHON_CCOMPLEX\ + && (defined(_WIN32) || defined(__clang__) || (defined(__GNUC__) && (__GNUC__ >= 5 || __GNUC__ == 4 && __GNUC_MINOR__ >= 4 )) || __cplusplus >= 201103) + #define __Pyx_SET_CREAL(z,x) ((z).real(x)) + #define __Pyx_SET_CIMAG(z,y) ((z).imag(y)) +#else + #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x) + #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y) +#endif + +/* Arithmetic.proto */ +#if CYTHON_CCOMPLEX + #define __Pyx_c_eq_float(a, b) ((a)==(b)) + #define __Pyx_c_sum_float(a, b) ((a)+(b)) + #define __Pyx_c_diff_float(a, b) ((a)-(b)) + #define __Pyx_c_prod_float(a, b) ((a)*(b)) + #define __Pyx_c_quot_float(a, b) ((a)/(b)) + #define __Pyx_c_neg_float(a) (-(a)) + #ifdef __cplusplus + #define __Pyx_c_is_zero_float(z) ((z)==(float)0) + #define __Pyx_c_conj_float(z) (::std::conj(z)) + #if 1 + #define __Pyx_c_abs_float(z) (::std::abs(z)) + #define __Pyx_c_pow_float(a, b) (::std::pow(a, b)) + #endif + #else + #define __Pyx_c_is_zero_float(z) ((z)==0) + #define __Pyx_c_conj_float(z) (conjf(z)) + #if 1 + #define __Pyx_c_abs_float(z) (cabsf(z)) + #define __Pyx_c_pow_float(a, b) (cpowf(a, b)) + #endif + #endif +#else + static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex); + static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex); + #if 1 + static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex, __pyx_t_float_complex); + #endif +#endif + +/* Arithmetic.proto */ +#if CYTHON_CCOMPLEX + #define __Pyx_c_eq_double(a, b) ((a)==(b)) + #define __Pyx_c_sum_double(a, b) ((a)+(b)) + #define __Pyx_c_diff_double(a, b) ((a)-(b)) + #define __Pyx_c_prod_double(a, b) ((a)*(b)) + #define __Pyx_c_quot_double(a, b) ((a)/(b)) + #define __Pyx_c_neg_double(a) (-(a)) + #ifdef __cplusplus + #define __Pyx_c_is_zero_double(z) ((z)==(double)0) + #define __Pyx_c_conj_double(z) (::std::conj(z)) + #if 1 + #define __Pyx_c_abs_double(z) (::std::abs(z)) + #define __Pyx_c_pow_double(a, b) (::std::pow(a, b)) + #endif + #else + #define __Pyx_c_is_zero_double(z) ((z)==0) + #define __Pyx_c_conj_double(z) (conj(z)) + #if 1 + #define __Pyx_c_abs_double(z) (cabs(z)) + #define __Pyx_c_pow_double(a, b) (cpow(a, b)) + #endif + #endif +#else + static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex); + static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex); + #if 1 + static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex, __pyx_t_double_complex); + #endif +#endif + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value); + +/* CIntFromPy.proto */ +static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); + +/* CIntFromPy.proto */ +static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); + +/* CheckBinaryVersion.proto */ +static int __Pyx_check_binary_version(void); + +/* PyIdentifierFromString.proto */ +#if !defined(__Pyx_PyIdentifier_FromString) +#if PY_MAJOR_VERSION < 3 + #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s) +#else + #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s) +#endif +#endif + +/* ModuleImport.proto */ +static PyObject *__Pyx_ImportModule(const char *name); + +/* TypeImport.proto */ +static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict); + +/* InitStrings.proto */ +static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); + +static PyObject *__pyx_f_3ccd_6models_10robust_fit_3RLM_fit(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyArrayObject *__pyx_v_X, PyArrayObject *__pyx_v_y, int __pyx_skip_dispatch); /* proto*/ +static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit_3RLM_predict(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyArrayObject *__pyx_v_X, int __pyx_skip_dispatch); /* proto*/ + +/* Module declarations from 'cpython.buffer' */ + +/* Module declarations from 'libc.string' */ + +/* Module declarations from 'libc.stdio' */ + +/* Module declarations from '__builtin__' */ + +/* Module declarations from 'cpython.type' */ +static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0; + +/* Module declarations from 'cpython.version' */ + +/* Module declarations from 'cpython.exc' */ + +/* Module declarations from 'cpython.module' */ + +/* Module declarations from 'cpython.mem' */ + +/* Module declarations from 'cpython.tuple' */ + +/* Module declarations from 'cpython.list' */ + +/* Module declarations from 'cpython.sequence' */ + +/* Module declarations from 'cpython.mapping' */ + +/* Module declarations from 'cpython.iterator' */ + +/* Module declarations from 'cpython.number' */ + +/* Module declarations from 'cpython.int' */ + +/* Module declarations from '__builtin__' */ + +/* Module declarations from 'cpython.bool' */ +static PyTypeObject *__pyx_ptype_7cpython_4bool_bool = 0; + +/* Module declarations from 'cpython.long' */ + +/* Module declarations from 'cpython.float' */ + +/* Module declarations from '__builtin__' */ + +/* Module declarations from 'cpython.complex' */ +static PyTypeObject *__pyx_ptype_7cpython_7complex_complex = 0; + +/* Module declarations from 'cpython.string' */ + +/* Module declarations from 'cpython.unicode' */ + +/* Module declarations from 'cpython.dict' */ + +/* Module declarations from 'cpython.instance' */ + +/* Module declarations from 'cpython.function' */ + +/* Module declarations from 'cpython.method' */ + +/* Module declarations from 'cpython.weakref' */ + +/* Module declarations from 'cpython.getargs' */ + +/* Module declarations from 'cpython.pythread' */ + +/* Module declarations from 'cpython.pystate' */ + +/* Module declarations from 'cpython.cobject' */ + +/* Module declarations from 'cpython.oldbuffer' */ + +/* Module declarations from 'cpython.set' */ + +/* Module declarations from 'cpython.bytes' */ + +/* Module declarations from 'cpython.pycapsule' */ + +/* Module declarations from 'cpython' */ + +/* Module declarations from 'cpython.object' */ + +/* Module declarations from 'cpython.ref' */ + +/* Module declarations from 'libc.stdlib' */ + +/* Module declarations from 'numpy' */ + +/* Module declarations from 'numpy' */ +static PyTypeObject *__pyx_ptype_5numpy_dtype = 0; +static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0; +static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0; +static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0; +static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0; +static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/ + +/* Module declarations from 'ccd.models.robust_fit' */ +static PyTypeObject *__pyx_ptype_3ccd_6models_10robust_fit_RLM = 0; +static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit_bisquare(PyArrayObject *, struct __pyx_opt_args_3ccd_6models_10robust_fit_bisquare *__pyx_optional_args); /*proto*/ +static __pyx_t_3ccd_6models_10robust_fit_STYPE_t __pyx_f_3ccd_6models_10robust_fit_mad(PyArrayObject *, struct __pyx_opt_args_3ccd_6models_10robust_fit_mad *__pyx_optional_args); /*proto*/ +static PyBoolObject *__pyx_f_3ccd_6models_10robust_fit__check_converge(PyArrayObject *, PyArrayObject *, struct __pyx_opt_args_3ccd_6models_10robust_fit__check_converge *__pyx_optional_args); /*proto*/ +static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit__weight_beta(PyArrayObject *, PyArrayObject *, PyArrayObject *); /*proto*/ +static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit__weight_resid(PyArrayObject *, PyArrayObject *, PyArrayObject *); /*proto*/ +static PyObject *__pyx_f_3ccd_6models_10robust_fit___pyx_unpickle_RLM__set_state(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *, PyObject *); /*proto*/ +static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_10robust_fit_STYPE_t = { "STYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_10robust_fit_STYPE_t), { 0 }, 0, 'R', 0, 0 }; +#define __Pyx_MODULE_NAME "ccd.models.robust_fit" +int __pyx_module_is_main_ccd__models__robust_fit = 0; + +/* Implementation of 'ccd.models.robust_fit' */ +static PyObject *__pyx_builtin_ValueError; +static PyObject *__pyx_builtin_range; +static PyObject *__pyx_builtin_RuntimeError; +static PyObject *__pyx_builtin_ImportError; +static const char __pyx_k_X[] = "X"; +static const char __pyx_k_y[] = "y"; +static const char __pyx_k_qr[] = "qr"; +static const char __pyx_k_EPS[] = "EPS"; +static const char __pyx_k_abs[] = "abs"; +static const char __pyx_k_any[] = "any"; +static const char __pyx_k_dot[] = "dot"; +static const char __pyx_k_eps[] = "eps"; +static const char __pyx_k_fit[] = "fit"; +static const char __pyx_k_inv[] = "inv"; +static const char __pyx_k_new[] = "__new__"; +static const char __pyx_k_std[] = "std"; +static const char __pyx_k_sum[] = "sum"; +static const char __pyx_k_tol[] = "tol"; +static const char __pyx_k_axis[] = "axis"; +static const char __pyx_k_copy[] = "copy"; +static const char __pyx_k_dict[] = "__dict__"; +static const char __pyx_k_fabs[] = "fabs"; +static const char __pyx_k_main[] = "__main__"; +static const char __pyx_k_name[] = "__name__"; +static const char __pyx_k_ones[] = "ones"; +static const char __pyx_k_sort[] = "sort"; +static const char __pyx_k_sqrt[] = "sqrt"; +static const char __pyx_k_test[] = "__test__"; +static const char __pyx_k_tune[] = "tune"; +static const char __pyx_k_class[] = "__class__"; +static const char __pyx_k_finfo[] = "finfo"; +static const char __pyx_k_float[] = "float"; +static const char __pyx_k_lstsq[] = "lstsq"; +static const char __pyx_k_numpy[] = "numpy"; +static const char __pyx_k_range[] = "range"; +static const char __pyx_k_scipy[] = "scipy"; +static const char __pyx_k_divide[] = "divide"; +static const char __pyx_k_import[] = "__import__"; +static const char __pyx_k_linalg[] = "linalg"; +static const char __pyx_k_median[] = "median"; +static const char __pyx_k_pickle[] = "pickle"; +static const char __pyx_k_result[] = "result"; +static const char __pyx_k_update[] = "update"; +static const char __pyx_k_maxiter[] = "maxiter"; +static const char __pyx_k_minimum[] = "minimum"; +static const char __pyx_k_predict[] = "predict"; +static const char __pyx_k_sklearn[] = "sklearn"; +static const char __pyx_k_pyx_type[] = "__pyx_type"; +static const char __pyx_k_array_str[] = "array_str"; +static const char __pyx_k_ones_like[] = "ones_like"; +static const char __pyx_k_precision[] = "precision"; +static const char __pyx_k_pyx_state[] = "__pyx_state"; +static const char __pyx_k_ValueError[] = "ValueError"; +static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__"; +static const char __pyx_k_ImportError[] = "ImportError"; +static const char __pyx_k_PickleError[] = "PickleError"; +static const char __pyx_k_RuntimeError[] = "RuntimeError"; +static const char __pyx_k_pyx_checksum[] = "__pyx_checksum"; +static const char __pyx_k_stringsource[] = "stringsource"; +static const char __pyx_k_update_scale[] = "update_scale"; +static const char __pyx_k_reduce_cython[] = "__reduce_cython__"; +static const char __pyx_k_scale_constant[] = "scale_constant"; +static const char __pyx_k_setstate_cython[] = "__setstate_cython__"; +static const char __pyx_k_pyx_unpickle_RLM[] = "__pyx_unpickle_RLM"; +static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; +static const char __pyx_k_ccd_models_robust_fit[] = "ccd.models.robust_fit"; +static const char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; +static const char __pyx_k_s_Coefficients_s_Intercept_5f[] = "%s:\n * Coefficients: %s\n * Intercept = %.5f\n"; +static const char __pyx_k_Perform_an_iteratively_re_weigh[] = "\nPerform an iteratively re-weighted least squares 'robust regression'. Basically\na clone of `statsmodels.robust.robust_linear_model.RLM` without all the lovely,\nbut costly, creature comforts.\n\nReference:\n http://statsmodels.sourceforge.net/stable/rlm.html\n http://cran.r-project.org/web/packages/robustreg/index.html\n http://cran.r-project.org/doc/contrib/Fox-Companion/appendix-robust-regression.pdf\n\nRun this file to test performance gains. Implementation is ~3x faster than\nstatsmodels and can reach ~4x faster if Numba is available to accelerate.\n\n"; +static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import"; +static const char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; +static const char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd"; +static const char __pyx_k_Incompatible_checksums_s_vs_0x78[] = "Incompatible checksums (%s vs 0x7819e12 = (coef_, intercept_, maxiter, scale, scale_constant, tol, tune, update_scale, weights))"; +static const char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported"; +static const char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous"; +static const char __pyx_k_numpy_core_umath_failed_to_impor[] = "numpy.core.umath failed to import"; +static const char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short."; +static PyObject *__pyx_n_s_EPS; +static PyObject *__pyx_kp_u_Format_string_allocated_too_shor; +static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2; +static PyObject *__pyx_n_s_ImportError; +static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0x78; +static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor; +static PyObject *__pyx_n_s_PickleError; +static PyObject *__pyx_n_s_RuntimeError; +static PyObject *__pyx_n_s_ValueError; +static PyObject *__pyx_n_s_X; +static PyObject *__pyx_n_s_abs; +static PyObject *__pyx_n_s_any; +static PyObject *__pyx_n_s_array_str; +static PyObject *__pyx_n_s_axis; +static PyObject *__pyx_n_s_ccd_models_robust_fit; +static PyObject *__pyx_n_s_class; +static PyObject *__pyx_n_s_cline_in_traceback; +static PyObject *__pyx_n_s_copy; +static PyObject *__pyx_n_s_dict; +static PyObject *__pyx_n_s_divide; +static PyObject *__pyx_n_s_dot; +static PyObject *__pyx_n_s_eps; +static PyObject *__pyx_n_s_fabs; +static PyObject *__pyx_n_s_finfo; +static PyObject *__pyx_n_s_fit; +static PyObject *__pyx_n_s_float; +static PyObject *__pyx_n_s_import; +static PyObject *__pyx_n_s_inv; +static PyObject *__pyx_n_s_linalg; +static PyObject *__pyx_n_s_lstsq; +static PyObject *__pyx_n_s_main; +static PyObject *__pyx_n_s_maxiter; +static PyObject *__pyx_n_s_median; +static PyObject *__pyx_n_s_minimum; +static PyObject *__pyx_n_s_name; +static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; +static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou; +static PyObject *__pyx_n_s_new; +static PyObject *__pyx_n_s_numpy; +static PyObject *__pyx_kp_s_numpy_core_multiarray_failed_to; +static PyObject *__pyx_kp_s_numpy_core_umath_failed_to_impor; +static PyObject *__pyx_n_s_ones; +static PyObject *__pyx_n_s_ones_like; +static PyObject *__pyx_n_s_pickle; +static PyObject *__pyx_n_s_precision; +static PyObject *__pyx_n_s_predict; +static PyObject *__pyx_n_s_pyx_checksum; +static PyObject *__pyx_n_s_pyx_state; +static PyObject *__pyx_n_s_pyx_type; +static PyObject *__pyx_n_s_pyx_unpickle_RLM; 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/* proto */ +static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_2fit(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyArrayObject *__pyx_v_X, PyArrayObject *__pyx_v_y); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_4predict(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyArrayObject *__pyx_v_X); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_6__str__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_4tune___get__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self); /* proto */ +static int __pyx_pf_3ccd_6models_10robust_fit_3RLM_4tune_2__set__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_14scale_constant___get__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self); /* proto */ +static int __pyx_pf_3ccd_6models_10robust_fit_3RLM_14scale_constant_2__set__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyObject *__pyx_v_value); 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+ if (*frame == NULL) return 0; + if (CYTHON_TRACE && (*frame)->f_trace == NULL) { + Py_INCREF(Py_None); + (*frame)->f_trace = Py_None; + } +#if PY_VERSION_HEX < 0x030400B1 + } else { + (*frame)->f_tstate = tstate; +#endif + } + __Pyx_PyFrame_SetLineNumber(*frame, firstlineno); + retval = 1; + tstate->tracing++; + tstate->use_tracing = 0; + PyErr_Fetch(&type, &value, &traceback); + #if CYTHON_TRACE + if (tstate->c_tracefunc) + retval = tstate->c_tracefunc(tstate->c_traceobj, *frame, PyTrace_CALL, NULL) == 0; + if (retval && tstate->c_profilefunc) + #endif + retval = tstate->c_profilefunc(tstate->c_profileobj, *frame, PyTrace_CALL, NULL) == 0; + tstate->use_tracing = (tstate->c_profilefunc || + (CYTHON_TRACE && tstate->c_tracefunc)); + tstate->tracing--; + if (retval) { + PyErr_Restore(type, value, traceback); + return tstate->use_tracing && retval; + } else { + Py_XDECREF(type); + Py_XDECREF(value); + Py_XDECREF(traceback); + return -1; + } +} +static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno) { + PyObject *py_srcfile = 0; + PyObject *py_funcname = 0; + PyCodeObject *py_code = 0; + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromString(funcname); + py_srcfile = PyString_FromString(srcfile); + #else + py_funcname = PyUnicode_FromString(funcname); + py_srcfile = PyUnicode_FromString(srcfile); + #endif + if (!py_funcname | !py_srcfile) goto bad; + py_code = PyCode_New( + 0, + #if PY_MAJOR_VERSION >= 3 + 0, + #endif + 0, + 0, + 0, + __pyx_empty_bytes, /*PyObject *code,*/ + __pyx_empty_tuple, /*PyObject *consts,*/ + __pyx_empty_tuple, /*PyObject *names,*/ + __pyx_empty_tuple, /*PyObject *varnames,*/ + __pyx_empty_tuple, /*PyObject *freevars,*/ + __pyx_empty_tuple, /*PyObject *cellvars,*/ + py_srcfile, /*PyObject *filename,*/ + py_funcname, /*PyObject *name,*/ + firstlineno, + __pyx_empty_bytes /*PyObject *lnotab*/ + ); +bad: + Py_XDECREF(py_srcfile); + Py_XDECREF(py_funcname); + return py_code; +} +#endif + +/* BufferFormatCheck */ +static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { + unsigned int n = 1; + return *(unsigned char*)(&n) != 0; +} +static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, + __Pyx_BufFmt_StackElem* stack, + __Pyx_TypeInfo* type) { + stack[0].field = &ctx->root; + stack[0].parent_offset = 0; + ctx->root.type = type; + ctx->root.name = "buffer dtype"; + ctx->root.offset = 0; + ctx->head = stack; + ctx->head->field = &ctx->root; + ctx->fmt_offset = 0; + ctx->head->parent_offset = 0; + ctx->new_packmode = '@'; + ctx->enc_packmode = '@'; + ctx->new_count = 1; + ctx->enc_count = 0; + ctx->enc_type = 0; + ctx->is_complex = 0; + ctx->is_valid_array = 0; + ctx->struct_alignment = 0; + while (type->typegroup == 'S') { + ++ctx->head; + ctx->head->field = type->fields; + ctx->head->parent_offset = 0; + type = type->fields->type; + } +} +static int __Pyx_BufFmt_ParseNumber(const char** ts) { + int count; + const char* t = *ts; + if (*t < '0' || *t > '9') { + return -1; + } else { + count = *t++ - '0'; + while (*t >= '0' && *t < '9') { + count *= 10; + count += *t++ - '0'; + } + } + *ts = t; + return count; +} +static int __Pyx_BufFmt_ExpectNumber(const char **ts) { + int number = __Pyx_BufFmt_ParseNumber(ts); + if (number == -1) + PyErr_Format(PyExc_ValueError,\ + "Does not understand character buffer dtype format string ('%c')", **ts); + return number; +} +static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) { + PyErr_Format(PyExc_ValueError, + "Unexpected format string character: '%c'", ch); +} +static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) { + switch (ch) { + case 'c': return "'char'"; + case 'b': return "'signed char'"; + case 'B': return "'unsigned char'"; + case 'h': return "'short'"; + case 'H': return "'unsigned short'"; + case 'i': return "'int'"; + case 'I': return "'unsigned int'"; + case 'l': return "'long'"; + case 'L': return "'unsigned long'"; + case 'q': return "'long long'"; + case 'Q': return "'unsigned long long'"; + case 'f': return (is_complex ? "'complex float'" : "'float'"); + case 'd': return (is_complex ? "'complex double'" : "'double'"); + case 'g': return (is_complex ? "'complex long double'" : "'long double'"); + case 'T': return "a struct"; + case 'O': return "Python object"; + case 'P': return "a pointer"; + case 's': case 'p': return "a string"; + case 0: return "end"; + default: return "unparseable format string"; + } +} +static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) { + switch (ch) { + case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return 2; + case 'i': case 'I': case 'l': case 'L': return 4; + case 'q': case 'Q': return 8; + case 'f': return (is_complex ? 8 : 4); + case 'd': return (is_complex ? 16 : 8); + case 'g': { + PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g').."); + return 0; + } + case 'O': case 'P': return sizeof(void*); + default: + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } +} +static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) { + switch (ch) { + case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return sizeof(short); + case 'i': case 'I': return sizeof(int); + case 'l': case 'L': return sizeof(long); + #ifdef HAVE_LONG_LONG + case 'q': case 'Q': return sizeof(PY_LONG_LONG); + #endif + case 'f': return sizeof(float) * (is_complex ? 2 : 1); + case 'd': return sizeof(double) * (is_complex ? 2 : 1); + case 'g': return sizeof(long double) * (is_complex ? 2 : 1); + case 'O': case 'P': return sizeof(void*); + default: { + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } + } +} +typedef struct { char c; short x; } __Pyx_st_short; +typedef struct { char c; int x; } __Pyx_st_int; +typedef struct { char c; long x; } __Pyx_st_long; +typedef struct { char c; float x; } __Pyx_st_float; +typedef struct { char c; double x; } __Pyx_st_double; +typedef struct { char c; long double x; } __Pyx_st_longdouble; +typedef struct { char c; void *x; } __Pyx_st_void_p; +#ifdef HAVE_LONG_LONG +typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong; +#endif +static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) { + switch (ch) { + case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short); + case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int); + case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long); +#ifdef HAVE_LONG_LONG + case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG); +#endif + case 'f': return sizeof(__Pyx_st_float) - sizeof(float); + case 'd': return sizeof(__Pyx_st_double) - sizeof(double); + case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double); + case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*); + default: + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } +} +/* These are for computing the padding at the end of the struct to align + on the first member of the struct. This will probably the same as above, + but we don't have any guarantees. + */ +typedef struct { short x; char c; } __Pyx_pad_short; +typedef struct { int x; char c; } __Pyx_pad_int; +typedef struct { long x; char c; } __Pyx_pad_long; +typedef struct { float x; char c; } __Pyx_pad_float; +typedef struct { double x; char c; } __Pyx_pad_double; +typedef struct { long double x; char c; } __Pyx_pad_longdouble; +typedef struct { void *x; char c; } __Pyx_pad_void_p; +#ifdef HAVE_LONG_LONG +typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong; +#endif +static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) { + switch (ch) { + case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short); + case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int); + case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long); +#ifdef HAVE_LONG_LONG + case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG); +#endif + case 'f': return sizeof(__Pyx_pad_float) - sizeof(float); + case 'd': return sizeof(__Pyx_pad_double) - sizeof(double); + case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double); + case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*); + default: + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } +} +static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) { + switch (ch) { + case 'c': + return 'H'; + case 'b': case 'h': case 'i': + case 'l': case 'q': case 's': case 'p': + return 'I'; + case 'B': case 'H': case 'I': case 'L': case 'Q': + return 'U'; + case 'f': case 'd': case 'g': + return (is_complex ? 'C' : 'R'); + case 'O': + return 'O'; + case 'P': + return 'P'; + default: { + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } + } +} +static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) { + if (ctx->head == NULL || ctx->head->field == &ctx->root) { + const char* expected; + const char* quote; + if (ctx->head == NULL) { + expected = "end"; + quote = ""; + } else { + expected = ctx->head->field->type->name; + quote = "'"; + } + PyErr_Format(PyExc_ValueError, + "Buffer dtype mismatch, expected %s%s%s but got %s", + quote, expected, quote, + __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex)); + } else { + __Pyx_StructField* field = ctx->head->field; + __Pyx_StructField* parent = (ctx->head - 1)->field; + PyErr_Format(PyExc_ValueError, + "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'", + field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex), + parent->type->name, field->name); + } +} +static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) { + char group; + size_t size, offset, arraysize = 1; + if (ctx->enc_type == 0) return 0; + if (ctx->head->field->type->arraysize[0]) { + int i, ndim = 0; + if (ctx->enc_type == 's' || ctx->enc_type == 'p') { + ctx->is_valid_array = ctx->head->field->type->ndim == 1; + ndim = 1; + if (ctx->enc_count != ctx->head->field->type->arraysize[0]) { + PyErr_Format(PyExc_ValueError, + "Expected a dimension of size %zu, got %zu", + ctx->head->field->type->arraysize[0], ctx->enc_count); + return -1; + } + } + if (!ctx->is_valid_array) { + PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d", + ctx->head->field->type->ndim, ndim); + return -1; + } + for (i = 0; i < ctx->head->field->type->ndim; i++) { + arraysize *= ctx->head->field->type->arraysize[i]; + } + ctx->is_valid_array = 0; + ctx->enc_count = 1; + } + group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex); + do { + __Pyx_StructField* field = ctx->head->field; + __Pyx_TypeInfo* type = field->type; + if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') { + size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex); + } else { + size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex); + } + if (ctx->enc_packmode == '@') { + size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex); + size_t align_mod_offset; + if (align_at == 0) return -1; + align_mod_offset = ctx->fmt_offset % align_at; + if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset; + if (ctx->struct_alignment == 0) + ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type, + ctx->is_complex); + } + if (type->size != size || type->typegroup != group) { + if (type->typegroup == 'C' && type->fields != NULL) { + size_t parent_offset = ctx->head->parent_offset + field->offset; + ++ctx->head; + ctx->head->field = type->fields; + ctx->head->parent_offset = parent_offset; + continue; + } + if ((type->typegroup == 'H' || group == 'H') && type->size == size) { + } else { + __Pyx_BufFmt_RaiseExpected(ctx); + return -1; + } + } + offset = ctx->head->parent_offset + field->offset; + if (ctx->fmt_offset != offset) { + PyErr_Format(PyExc_ValueError, + "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected", + (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset); + return -1; + } + ctx->fmt_offset += size; + if (arraysize) + ctx->fmt_offset += (arraysize - 1) * size; + --ctx->enc_count; + while (1) { + if (field == &ctx->root) { + ctx->head = NULL; + if (ctx->enc_count != 0) { + __Pyx_BufFmt_RaiseExpected(ctx); + return -1; + } + break; + } + ctx->head->field = ++field; + if (field->type == NULL) { + --ctx->head; + field = ctx->head->field; + continue; + } else if (field->type->typegroup == 'S') { + size_t parent_offset = ctx->head->parent_offset + field->offset; + if (field->type->fields->type == NULL) continue; + field = field->type->fields; + ++ctx->head; + ctx->head->field = field; + ctx->head->parent_offset = parent_offset; + break; + } else { + break; + } + } + } while (ctx->enc_count); + ctx->enc_type = 0; + ctx->is_complex = 0; + return 0; +} +static CYTHON_INLINE PyObject * +__pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp) +{ + const char *ts = *tsp; + int i = 0, number; + int ndim = ctx->head->field->type->ndim; +; + ++ts; + if (ctx->new_count != 1) { + PyErr_SetString(PyExc_ValueError, + "Cannot handle repeated arrays in format string"); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + while (*ts && *ts != ')') { + switch (*ts) { + case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue; + default: break; + } + number = __Pyx_BufFmt_ExpectNumber(&ts); + if (number == -1) return NULL; + if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i]) + return PyErr_Format(PyExc_ValueError, + "Expected a dimension of size %zu, got %d", + ctx->head->field->type->arraysize[i], number); + if (*ts != ',' && *ts != ')') + return PyErr_Format(PyExc_ValueError, + "Expected a comma in format string, got '%c'", *ts); + if (*ts == ',') ts++; + i++; + } + if (i != ndim) + return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d", + ctx->head->field->type->ndim, i); + if (!*ts) { + PyErr_SetString(PyExc_ValueError, + "Unexpected end of format string, expected ')'"); + return NULL; + } + ctx->is_valid_array = 1; + ctx->new_count = 1; + *tsp = ++ts; + return Py_None; +} +static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) { + int got_Z = 0; + while (1) { + switch(*ts) { + case 0: + if (ctx->enc_type != 0 && ctx->head == NULL) { + __Pyx_BufFmt_RaiseExpected(ctx); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + if (ctx->head != NULL) { + __Pyx_BufFmt_RaiseExpected(ctx); + return NULL; + } + return ts; + case ' ': + case '\r': + case '\n': + ++ts; + break; + case '<': + if (!__Pyx_IsLittleEndian()) { + PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler"); + return NULL; + } + ctx->new_packmode = '='; + ++ts; + break; + case '>': + case '!': + if (__Pyx_IsLittleEndian()) { + PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler"); + return NULL; + } + ctx->new_packmode = '='; + ++ts; + break; + case '=': + case '@': + case '^': + ctx->new_packmode = *ts++; + break; + case 'T': + { + const char* ts_after_sub; + size_t i, struct_count = ctx->new_count; + size_t struct_alignment = ctx->struct_alignment; + ctx->new_count = 1; + ++ts; + if (*ts != '{') { + PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'"); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_type = 0; + ctx->enc_count = 0; + ctx->struct_alignment = 0; + ++ts; + ts_after_sub = ts; + for (i = 0; i != struct_count; ++i) { + ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts); + if (!ts_after_sub) return NULL; + } + ts = ts_after_sub; + if (struct_alignment) ctx->struct_alignment = struct_alignment; + } + break; + case '}': + { + size_t alignment = ctx->struct_alignment; + ++ts; + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_type = 0; + if (alignment && ctx->fmt_offset % alignment) { + ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment); + } + } + return ts; + case 'x': + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->fmt_offset += ctx->new_count; + ctx->new_count = 1; + ctx->enc_count = 0; + ctx->enc_type = 0; + ctx->enc_packmode = ctx->new_packmode; + ++ts; + break; + case 'Z': + got_Z = 1; + ++ts; + if (*ts != 'f' && *ts != 'd' && *ts != 'g') { + __Pyx_BufFmt_RaiseUnexpectedChar('Z'); + return NULL; + } + case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I': + case 'l': case 'L': case 'q': case 'Q': + case 'f': case 'd': case 'g': + case 'O': case 'p': + if (ctx->enc_type == *ts && got_Z == ctx->is_complex && + ctx->enc_packmode == ctx->new_packmode) { + ctx->enc_count += ctx->new_count; + ctx->new_count = 1; + got_Z = 0; + ++ts; + break; + } + case 's': + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_count = ctx->new_count; + ctx->enc_packmode = ctx->new_packmode; + ctx->enc_type = *ts; + ctx->is_complex = got_Z; + ++ts; + ctx->new_count = 1; + got_Z = 0; + break; + case ':': + ++ts; + while(*ts != ':') ++ts; + ++ts; + break; + case '(': + if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL; + break; + default: + { + int number = __Pyx_BufFmt_ExpectNumber(&ts); + if (number == -1) return NULL; + ctx->new_count = (size_t)number; + } + } + } +} +static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) { + buf->buf = NULL; + buf->obj = NULL; + buf->strides = __Pyx_zeros; + buf->shape = __Pyx_zeros; + buf->suboffsets = __Pyx_minusones; +} +static CYTHON_INLINE int __Pyx_GetBufferAndValidate( + Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, + int nd, int cast, __Pyx_BufFmt_StackElem* stack) +{ + if (obj == Py_None || obj == NULL) { + __Pyx_ZeroBuffer(buf); + return 0; + } + buf->buf = NULL; + if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail; + if (buf->ndim != nd) { + PyErr_Format(PyExc_ValueError, + "Buffer has wrong number of dimensions (expected %d, got %d)", + nd, buf->ndim); + goto fail; + } + if (!cast) { + __Pyx_BufFmt_Context ctx; + __Pyx_BufFmt_Init(&ctx, stack, dtype); + if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail; + } + if ((unsigned)buf->itemsize != dtype->size) { + PyErr_Format(PyExc_ValueError, + "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)", + buf->itemsize, (buf->itemsize > 1) ? "s" : "", + dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : ""); + goto fail; + } + if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones; + return 0; +fail:; + __Pyx_ZeroBuffer(buf); + return -1; +} +static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { + if (info->buf == NULL) return; + if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL; + __Pyx_ReleaseBuffer(info); +} + +/* GetBuiltinName */ + static PyObject *__Pyx_GetBuiltinName(PyObject *name) { + PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name); + if (unlikely(!result)) { + PyErr_Format(PyExc_NameError, +#if PY_MAJOR_VERSION >= 3 + "name '%U' is not defined", name); +#else + "name '%.200s' is not defined", PyString_AS_STRING(name)); +#endif + } + return result; +} + +/* GetModuleGlobalName */ + static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { + PyObject *result; +#if !CYTHON_AVOID_BORROWED_REFS + result = PyDict_GetItem(__pyx_d, name); + if (likely(result)) { + Py_INCREF(result); + } else { +#else + result = PyObject_GetItem(__pyx_d, name); + if (!result) { + PyErr_Clear(); +#endif + result = __Pyx_GetBuiltinName(name); + } + return result; +} + +/* PyCFunctionFastCall */ + #if CYTHON_FAST_PYCCALL +static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, PyObject **args, Py_ssize_t nargs) { + PyCFunctionObject *func = (PyCFunctionObject*)func_obj; + PyCFunction meth = PyCFunction_GET_FUNCTION(func); + PyObject *self = PyCFunction_GET_SELF(func); + int flags = PyCFunction_GET_FLAGS(func); + assert(PyCFunction_Check(func)); + assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))); + assert(nargs >= 0); + assert(nargs == 0 || args != NULL); + /* _PyCFunction_FastCallDict() must not be called with an exception set, + because it may clear it (directly or indirectly) and so the + caller loses its exception */ + assert(!PyErr_Occurred()); + if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) { + return (*((__Pyx_PyCFunctionFastWithKeywords)meth)) (self, args, nargs, NULL); + } else { + return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs); + } +} +#endif + +/* PyFunctionFastCall */ + #if CYTHON_FAST_PYCALL +#include "frameobject.h" +static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na, + PyObject *globals) { + PyFrameObject *f; + PyThreadState *tstate = PyThreadState_GET(); + PyObject **fastlocals; + Py_ssize_t i; + PyObject *result; + assert(globals != NULL); + /* XXX Perhaps we should create a specialized + PyFrame_New() that doesn't take locals, but does + take builtins without sanity checking them. + */ + assert(tstate != NULL); + f = PyFrame_New(tstate, co, globals, NULL); + if (f == NULL) { + return NULL; + } + fastlocals = f->f_localsplus; + for (i = 0; i < na; i++) { + Py_INCREF(*args); + fastlocals[i] = *args++; + } + result = PyEval_EvalFrameEx(f,0); + ++tstate->recursion_depth; + Py_DECREF(f); + --tstate->recursion_depth; + return result; +} +#if 1 || PY_VERSION_HEX < 0x030600B1 +static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs) { + PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func); + PyObject *globals = PyFunction_GET_GLOBALS(func); + PyObject *argdefs = PyFunction_GET_DEFAULTS(func); + PyObject *closure; +#if PY_MAJOR_VERSION >= 3 + PyObject *kwdefs; +#endif + PyObject *kwtuple, **k; + PyObject **d; + Py_ssize_t nd; + Py_ssize_t nk; + PyObject *result; + assert(kwargs == NULL || PyDict_Check(kwargs)); + nk = kwargs ? PyDict_Size(kwargs) : 0; + if (Py_EnterRecursiveCall((char*)" while calling a Python object")) { + return NULL; + } + if ( +#if PY_MAJOR_VERSION >= 3 + co->co_kwonlyargcount == 0 && +#endif + likely(kwargs == NULL || nk == 0) && + co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) { + if (argdefs == NULL && co->co_argcount == nargs) { + result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals); + goto done; + } + else if (nargs == 0 && argdefs != NULL + && co->co_argcount == Py_SIZE(argdefs)) { + /* function called with no arguments, but all parameters have + a default value: use default values as arguments .*/ + args = &PyTuple_GET_ITEM(argdefs, 0); + result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals); + goto done; + } + } + if (kwargs != NULL) { + Py_ssize_t pos, i; + kwtuple = PyTuple_New(2 * nk); + if (kwtuple == NULL) { + result = NULL; + goto done; + } + k = &PyTuple_GET_ITEM(kwtuple, 0); + pos = i = 0; + while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) { + Py_INCREF(k[i]); + Py_INCREF(k[i+1]); + i += 2; + } + nk = i / 2; + } + else { + kwtuple = NULL; + k = NULL; + } + closure = PyFunction_GET_CLOSURE(func); +#if PY_MAJOR_VERSION >= 3 + kwdefs = PyFunction_GET_KW_DEFAULTS(func); +#endif + if (argdefs != NULL) { + d = &PyTuple_GET_ITEM(argdefs, 0); + nd = Py_SIZE(argdefs); + } + else { + d = NULL; + nd = 0; + } +#if PY_MAJOR_VERSION >= 3 + result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL, + args, nargs, + k, (int)nk, + d, (int)nd, kwdefs, closure); +#else + result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL, + args, nargs, + k, (int)nk, + d, (int)nd, closure); +#endif + Py_XDECREF(kwtuple); +done: + Py_LeaveRecursiveCall(); + return result; +} +#endif +#endif + +/* PyObjectCall */ + #if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { + PyObject *result; + ternaryfunc call = func->ob_type->tp_call; + if (unlikely(!call)) + return PyObject_Call(func, arg, kw); + if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) + return NULL; + result = (*call)(func, arg, kw); + Py_LeaveRecursiveCall(); + if (unlikely(!result) && unlikely(!PyErr_Occurred())) { + PyErr_SetString( + PyExc_SystemError, + "NULL result without error in PyObject_Call"); + } + return result; +} +#endif + +/* PyObjectCallMethO */ + #if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { + PyObject *self, *result; + PyCFunction cfunc; + cfunc = PyCFunction_GET_FUNCTION(func); + self = PyCFunction_GET_SELF(func); + if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) + return NULL; + result = cfunc(self, arg); + Py_LeaveRecursiveCall(); + if (unlikely(!result) && unlikely(!PyErr_Occurred())) { + PyErr_SetString( + PyExc_SystemError, + "NULL result without error in PyObject_Call"); + } + return result; +} +#endif + +/* PyObjectCallOneArg */ + #if CYTHON_COMPILING_IN_CPYTHON +static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) { + PyObject *result; + PyObject *args = PyTuple_New(1); + if (unlikely(!args)) return NULL; + Py_INCREF(arg); + PyTuple_SET_ITEM(args, 0, arg); + result = __Pyx_PyObject_Call(func, args, NULL); + Py_DECREF(args); + return result; +} +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { +#if CYTHON_FAST_PYCALL + if (PyFunction_Check(func)) { + return __Pyx_PyFunction_FastCall(func, &arg, 1); + } +#endif + if (likely(PyCFunction_Check(func))) { + if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { + return __Pyx_PyObject_CallMethO(func, arg); +#if CYTHON_FAST_PYCCALL + } else if (PyCFunction_GET_FLAGS(func) & METH_FASTCALL) { + return __Pyx_PyCFunction_FastCall(func, &arg, 1); +#endif + } + } + return __Pyx__PyObject_CallOneArg(func, arg); +} +#else +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { + PyObject *result; + PyObject *args = PyTuple_Pack(1, arg); + if (unlikely(!args)) return NULL; + result = __Pyx_PyObject_Call(func, args, NULL); + Py_DECREF(args); + return result; +} +#endif + +/* ExtTypeTest */ + static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + if (likely(PyObject_TypeCheck(obj, type))) + return 1; + PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", + Py_TYPE(obj)->tp_name, type->tp_name); + return 0; +} + +/* PyIntBinop */ + #if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_SubtractCObj(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { + #if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(op2))) { + const long a = intval; + long x; + long b = PyInt_AS_LONG(op2); + x = (long)((unsigned long)a - b); + if (likely((x^a) >= 0 || (x^~b) >= 0)) + return PyInt_FromLong(x); + return PyLong_Type.tp_as_number->nb_subtract(op1, op2); + } + #endif + #if CYTHON_USE_PYLONG_INTERNALS + if (likely(PyLong_CheckExact(op2))) { + const long a = intval; + long b, x; +#ifdef HAVE_LONG_LONG + const PY_LONG_LONG lla = intval; + PY_LONG_LONG llb, llx; +#endif + const digit* digits = ((PyLongObject*)op2)->ob_digit; + const Py_ssize_t size = Py_SIZE(op2); + if (likely(__Pyx_sst_abs(size) <= 1)) { + b = likely(size) ? digits[0] : 0; + if (size == -1) b = -b; + } else { + switch (size) { + case -2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + b = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { + llb = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case 2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + b = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { + llb = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case -3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + b = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { + llb = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case 3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + b = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { + llb = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case -4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + b = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { + llb = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case 4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + b = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { + llb = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + default: return PyLong_Type.tp_as_number->nb_subtract(op1, op2); + } + } + x = a - b; + return PyLong_FromLong(x); +#ifdef HAVE_LONG_LONG + long_long: + llx = lla - llb; + return PyLong_FromLongLong(llx); +#endif + + + } + #endif + if (PyFloat_CheckExact(op2)) { + const long a = intval; + double b = PyFloat_AS_DOUBLE(op2); + double result; + PyFPE_START_PROTECT("subtract", return NULL) + result = ((double)a) - (double)b; + PyFPE_END_PROTECT(result) + return PyFloat_FromDouble(result); + } + return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2); +} +#endif + +/* PyErrFetchRestore */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + tmp_type = tstate->curexc_type; + tmp_value = tstate->curexc_value; + tmp_tb = tstate->curexc_traceback; + tstate->curexc_type = type; + tstate->curexc_value = value; + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +} +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { + *type = tstate->curexc_type; + *value = tstate->curexc_value; + *tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +} +#endif + +/* SliceObject */ + static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice(PyObject* obj, + Py_ssize_t cstart, Py_ssize_t cstop, + PyObject** _py_start, PyObject** _py_stop, PyObject** _py_slice, + int has_cstart, int has_cstop, CYTHON_UNUSED int wraparound) { +#if CYTHON_USE_TYPE_SLOTS + PyMappingMethods* mp; +#if PY_MAJOR_VERSION < 3 + PySequenceMethods* ms = Py_TYPE(obj)->tp_as_sequence; + if (likely(ms && ms->sq_slice)) { + if (!has_cstart) { + if (_py_start && (*_py_start != Py_None)) { + cstart = __Pyx_PyIndex_AsSsize_t(*_py_start); + if ((cstart == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; + } else + cstart = 0; + } + if (!has_cstop) { + if (_py_stop && (*_py_stop != Py_None)) { + cstop = __Pyx_PyIndex_AsSsize_t(*_py_stop); + if ((cstop == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; + } else + cstop = PY_SSIZE_T_MAX; + } + if (wraparound && unlikely((cstart < 0) | (cstop < 0)) && likely(ms->sq_length)) { + Py_ssize_t l = ms->sq_length(obj); + if (likely(l >= 0)) { + if (cstop < 0) { + cstop += l; + if (cstop < 0) cstop = 0; + } + if (cstart < 0) { + cstart += l; + if (cstart < 0) cstart = 0; + } + } else { + if (!PyErr_ExceptionMatches(PyExc_OverflowError)) + goto bad; + PyErr_Clear(); + } + } + return ms->sq_slice(obj, cstart, cstop); + } +#endif + mp = Py_TYPE(obj)->tp_as_mapping; + if (likely(mp && mp->mp_subscript)) +#endif + { + PyObject* result; + PyObject *py_slice, *py_start, *py_stop; + if (_py_slice) { + py_slice = *_py_slice; + } else { + PyObject* owned_start = NULL; + PyObject* owned_stop = NULL; + if (_py_start) { + py_start = *_py_start; + } else { + if (has_cstart) { + owned_start = py_start = PyInt_FromSsize_t(cstart); + if (unlikely(!py_start)) goto bad; + } else + py_start = Py_None; + } + if (_py_stop) { + py_stop = *_py_stop; + } else { + if (has_cstop) { + owned_stop = py_stop = PyInt_FromSsize_t(cstop); + if (unlikely(!py_stop)) { + Py_XDECREF(owned_start); + goto bad; + } + } else + py_stop = Py_None; + } + py_slice = PySlice_New(py_start, py_stop, Py_None); + Py_XDECREF(owned_start); + Py_XDECREF(owned_stop); + if (unlikely(!py_slice)) goto bad; + } +#if CYTHON_USE_TYPE_SLOTS + result = mp->mp_subscript(obj, py_slice); +#else + result = PyObject_GetItem(obj, py_slice); +#endif + if (!_py_slice) { + Py_DECREF(py_slice); + } + return result; + } + PyErr_Format(PyExc_TypeError, + "'%.200s' object is unsliceable", Py_TYPE(obj)->tp_name); +bad: + return NULL; +} + +/* WriteUnraisableException */ + static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, + CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename, + int full_traceback, CYTHON_UNUSED int nogil) { + PyObject *old_exc, *old_val, *old_tb; + PyObject *ctx; + __Pyx_PyThreadState_declare +#ifdef WITH_THREAD + PyGILState_STATE state; + if (nogil) + state = PyGILState_Ensure(); +#ifdef _MSC_VER + else state = (PyGILState_STATE)-1; +#endif +#endif + __Pyx_PyThreadState_assign + __Pyx_ErrFetch(&old_exc, &old_val, &old_tb); + if (full_traceback) { + Py_XINCREF(old_exc); + Py_XINCREF(old_val); + Py_XINCREF(old_tb); + __Pyx_ErrRestore(old_exc, old_val, old_tb); + PyErr_PrintEx(1); + } + #if PY_MAJOR_VERSION < 3 + ctx = PyString_FromString(name); + #else + ctx = PyUnicode_FromString(name); + #endif + __Pyx_ErrRestore(old_exc, old_val, old_tb); + if (!ctx) { + PyErr_WriteUnraisable(Py_None); + } else { + PyErr_WriteUnraisable(ctx); + Py_DECREF(ctx); + } +#ifdef WITH_THREAD + if (nogil) + PyGILState_Release(state); +#endif +} + +/* GetItemInt */ + static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { + PyObject *r; + if (!j) return NULL; + r = PyObject_GetItem(o, j); + Py_DECREF(j); + return r; +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + Py_ssize_t wrapped_i = i; + if (wraparound & unlikely(i < 0)) { + wrapped_i += PyList_GET_SIZE(o); + } + if ((!boundscheck) || likely((0 <= wrapped_i) & (wrapped_i < PyList_GET_SIZE(o)))) { + PyObject *r = PyList_GET_ITEM(o, wrapped_i); + Py_INCREF(r); + return r; + } + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +#else + return PySequence_GetItem(o, i); +#endif +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + Py_ssize_t wrapped_i = i; + if (wraparound & unlikely(i < 0)) { + wrapped_i += PyTuple_GET_SIZE(o); + } + if ((!boundscheck) || likely((0 <= wrapped_i) & (wrapped_i < PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, wrapped_i); + Py_INCREF(r); + return r; + } + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +#else + return PySequence_GetItem(o, i); +#endif +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS + if (is_list || PyList_CheckExact(o)) { + Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); + if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) { + PyObject *r = PyList_GET_ITEM(o, n); + Py_INCREF(r); + return r; + } + } + else if (PyTuple_CheckExact(o)) { + Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); + if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, n); + Py_INCREF(r); + return r; + } + } else { + PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; + if (likely(m && m->sq_item)) { + if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { + Py_ssize_t l = m->sq_length(o); + if (likely(l >= 0)) { + i += l; + } else { + if (!PyErr_ExceptionMatches(PyExc_OverflowError)) + return NULL; + PyErr_Clear(); + } + } + return m->sq_item(o, i); + } + } +#else + if (is_list || PySequence_Check(o)) { + return PySequence_GetItem(o, i); + } +#endif + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +} + +/* RaiseDoubleKeywords */ + static void __Pyx_RaiseDoubleKeywordsError( + const char* func_name, + PyObject* kw_name) +{ + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION >= 3 + "%s() got multiple values for keyword argument '%U'", func_name, kw_name); + #else + "%s() got multiple values for keyword argument '%s'", func_name, + PyString_AsString(kw_name)); + #endif +} + +/* ParseKeywords */ + static int __Pyx_ParseOptionalKeywords( + PyObject *kwds, + PyObject **argnames[], + PyObject *kwds2, + PyObject *values[], + Py_ssize_t num_pos_args, + const char* function_name) +{ + PyObject *key = 0, *value = 0; + Py_ssize_t pos = 0; + PyObject*** name; + PyObject*** first_kw_arg = argnames + num_pos_args; + while (PyDict_Next(kwds, &pos, &key, &value)) { + name = first_kw_arg; + while (*name && (**name != key)) name++; + if (*name) { + values[name-argnames] = value; + continue; + } + name = first_kw_arg; + #if PY_MAJOR_VERSION < 3 + if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) { + while (*name) { + if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) + && _PyString_Eq(**name, key)) { + values[name-argnames] = value; + break; + } + name++; + } + if (*name) continue; + else { + PyObject*** argname = argnames; + while (argname != first_kw_arg) { + if ((**argname == key) || ( + (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) + && _PyString_Eq(**argname, key))) { + goto arg_passed_twice; + } + argname++; + } + } + } else + #endif + if (likely(PyUnicode_Check(key))) { + while (*name) { + int cmp = (**name == key) ? 0 : + #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 + (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : + #endif + PyUnicode_Compare(**name, key); + if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; + if (cmp == 0) { + values[name-argnames] = value; + break; + } + name++; + } + if (*name) continue; + else { + PyObject*** argname = argnames; + while (argname != first_kw_arg) { + int cmp = (**argname == key) ? 0 : + #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 + (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : + #endif + PyUnicode_Compare(**argname, key); + if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; + if (cmp == 0) goto arg_passed_twice; + argname++; + } + } + } else + goto invalid_keyword_type; + if (kwds2) { + if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; + } else { + goto invalid_keyword; + } + } + return 0; +arg_passed_twice: + __Pyx_RaiseDoubleKeywordsError(function_name, key); + goto bad; +invalid_keyword_type: + PyErr_Format(PyExc_TypeError, + "%.200s() keywords must be strings", function_name); + goto bad; +invalid_keyword: + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION < 3 + "%.200s() got an unexpected keyword argument '%.200s'", + function_name, PyString_AsString(key)); + #else + "%s() got an unexpected keyword argument '%U'", + function_name, key); + #endif +bad: + return -1; +} + +/* RaiseArgTupleInvalid */ + static void __Pyx_RaiseArgtupleInvalid( + const char* func_name, + int exact, + Py_ssize_t num_min, + Py_ssize_t num_max, + Py_ssize_t num_found) +{ + Py_ssize_t num_expected; + const char *more_or_less; + if (num_found < num_min) { + num_expected = num_min; + more_or_less = "at least"; + } else { + num_expected = num_max; + more_or_less = "at most"; + } + if (exact) { + more_or_less = "exactly"; + } + PyErr_Format(PyExc_TypeError, + "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", + func_name, more_or_less, num_expected, + (num_expected == 1) ? "" : "s", num_found); +} + +/* RaiseTooManyValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { + PyErr_Format(PyExc_ValueError, + "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); +} + +/* RaiseNeedMoreValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { + PyErr_Format(PyExc_ValueError, + "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", + index, (index == 1) ? "" : "s"); +} + +/* IterFinish */ + static CYTHON_INLINE int __Pyx_IterFinish(void) { +#if CYTHON_FAST_THREAD_STATE + PyThreadState *tstate = PyThreadState_GET(); + PyObject* exc_type = tstate->curexc_type; + if (unlikely(exc_type)) { + if (likely(exc_type == PyExc_StopIteration) || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)) { + PyObject *exc_value, *exc_tb; + exc_value = tstate->curexc_value; + exc_tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; + Py_DECREF(exc_type); + Py_XDECREF(exc_value); + Py_XDECREF(exc_tb); + return 0; + } else { + return -1; + } + } + return 0; +#else + if (unlikely(PyErr_Occurred())) { + if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) { + PyErr_Clear(); + return 0; + } else { + return -1; + } + } + return 0; +#endif +} + +/* UnpackItemEndCheck */ + static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { + if (unlikely(retval)) { + Py_DECREF(retval); + __Pyx_RaiseTooManyValuesError(expected); + return -1; + } else { + return __Pyx_IterFinish(); + } + return 0; +} + +/* PyObjectCallNoArg */ + #if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) { +#if CYTHON_FAST_PYCALL + if (PyFunction_Check(func)) { + return __Pyx_PyFunction_FastCall(func, NULL, 0); + } +#endif +#ifdef __Pyx_CyFunction_USED + if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { +#else + if (likely(PyCFunction_Check(func))) { +#endif + if (likely(PyCFunction_GET_FLAGS(func) & METH_NOARGS)) { + return __Pyx_PyObject_CallMethO(func, NULL); + } + } + return __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL); +} +#endif + +/* ArgTypeTest */ + static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { + PyErr_Format(PyExc_TypeError, + "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", + name, type->tp_name, Py_TYPE(obj)->tp_name); +} +static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, + const char *name, int exact) +{ + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + if (none_allowed && obj == Py_None) return 1; + else if (exact) { + if (likely(Py_TYPE(obj) == type)) return 1; + #if PY_MAJOR_VERSION == 2 + else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; + #endif + } + else { + if (likely(PyObject_TypeCheck(obj, type))) return 1; + } + __Pyx_RaiseArgumentTypeInvalid(name, obj, type); + return 0; +} + +/* GetAttr */ + static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *o, PyObject *n) { +#if CYTHON_COMPILING_IN_CPYTHON +#if PY_MAJOR_VERSION >= 3 + if (likely(PyUnicode_Check(n))) +#else + if (likely(PyString_Check(n))) +#endif + return __Pyx_PyObject_GetAttrStr(o, n); +#endif + return PyObject_GetAttr(o, n); +} + +/* GetAttr3 */ + static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *o, PyObject *n, PyObject *d) { + PyObject *r = __Pyx_GetAttr(o, n); + if (unlikely(!r)) { + if (!PyErr_ExceptionMatches(PyExc_AttributeError)) + goto bad; + PyErr_Clear(); + r = d; + Py_INCREF(d); + } + return r; +bad: + return NULL; +} + +/* Import */ + static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { + PyObject *empty_list = 0; + PyObject *module = 0; + PyObject *global_dict = 0; + PyObject *empty_dict = 0; + PyObject *list; + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_import; + py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); + if (!py_import) + goto bad; + #endif + if (from_list) + list = from_list; + else { + empty_list = PyList_New(0); + if (!empty_list) + goto bad; + list = empty_list; + } + global_dict = PyModule_GetDict(__pyx_m); + if (!global_dict) + goto bad; + empty_dict = PyDict_New(); + if (!empty_dict) + goto bad; + { + #if PY_MAJOR_VERSION >= 3 + if (level == -1) { + if (strchr(__Pyx_MODULE_NAME, '.')) { + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_level = PyInt_FromLong(1); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, 1); + #endif + if (!module) { + if (!PyErr_ExceptionMatches(PyExc_ImportError)) + goto bad; + PyErr_Clear(); + } + } + level = 0; + } + #endif + if (!module) { + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_level = PyInt_FromLong(level); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, level); + #endif + } + } +bad: + #if PY_VERSION_HEX < 0x03030000 + Py_XDECREF(py_import); + #endif + Py_XDECREF(empty_list); + Py_XDECREF(empty_dict); + return module; +} + +/* ImportFrom */ + static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { + PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); + if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { + PyErr_Format(PyExc_ImportError, + #if PY_MAJOR_VERSION < 3 + "cannot import name %.230s", PyString_AS_STRING(name)); + #else + "cannot import name %S", name); + #endif + } + return value; +} + +/* RaiseException */ + #if PY_MAJOR_VERSION < 3 +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, + CYTHON_UNUSED PyObject *cause) { + __Pyx_PyThreadState_declare + Py_XINCREF(type); + if (!value || value == Py_None) + value = NULL; + else + Py_INCREF(value); + if (!tb || tb == Py_None) + tb = NULL; + else { + Py_INCREF(tb); + if (!PyTraceBack_Check(tb)) { + PyErr_SetString(PyExc_TypeError, + "raise: arg 3 must be a traceback or None"); + goto raise_error; + } + } + if (PyType_Check(type)) { +#if CYTHON_COMPILING_IN_PYPY + if (!value) { + Py_INCREF(Py_None); + value = Py_None; + } +#endif + PyErr_NormalizeException(&type, &value, &tb); + } else { + if (value) { + PyErr_SetString(PyExc_TypeError, + "instance exception may not have a separate value"); + goto raise_error; + } + value = type; + type = (PyObject*) Py_TYPE(type); + Py_INCREF(type); + if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { + PyErr_SetString(PyExc_TypeError, + "raise: exception class must be a subclass of BaseException"); + goto raise_error; + } + } + __Pyx_PyThreadState_assign + __Pyx_ErrRestore(type, value, tb); + return; +raise_error: + Py_XDECREF(value); + Py_XDECREF(type); + Py_XDECREF(tb); + return; +} +#else +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { + PyObject* owned_instance = NULL; + if (tb == Py_None) { + tb = 0; + } else if (tb && !PyTraceBack_Check(tb)) { + PyErr_SetString(PyExc_TypeError, + "raise: arg 3 must be a traceback or None"); + goto bad; + } + if (value == Py_None) + value = 0; + if (PyExceptionInstance_Check(type)) { + if (value) { + PyErr_SetString(PyExc_TypeError, + "instance exception may not have a separate value"); + goto bad; + } + value = type; + type = (PyObject*) Py_TYPE(value); + } else if (PyExceptionClass_Check(type)) { + PyObject *instance_class = NULL; + if (value && PyExceptionInstance_Check(value)) { + instance_class = (PyObject*) Py_TYPE(value); + if (instance_class != type) { + int is_subclass = PyObject_IsSubclass(instance_class, type); + if (!is_subclass) { + instance_class = NULL; + } else if (unlikely(is_subclass == -1)) { + goto bad; + } else { + type = instance_class; + } + } + } + if (!instance_class) { + PyObject *args; + if (!value) + args = PyTuple_New(0); + else if (PyTuple_Check(value)) { + Py_INCREF(value); + args = value; + } else + args = PyTuple_Pack(1, value); + if (!args) + goto bad; + owned_instance = PyObject_Call(type, args, NULL); + Py_DECREF(args); + if (!owned_instance) + goto bad; + value = owned_instance; + if (!PyExceptionInstance_Check(value)) { + PyErr_Format(PyExc_TypeError, + "calling %R should have returned an instance of " + "BaseException, not %R", + type, Py_TYPE(value)); + goto bad; + } + } + } else { + PyErr_SetString(PyExc_TypeError, + "raise: exception class must be a subclass of BaseException"); + goto bad; + } +#if PY_VERSION_HEX >= 0x03030000 + if (cause) { +#else + if (cause && cause != Py_None) { +#endif + PyObject *fixed_cause; + if (cause == Py_None) { + fixed_cause = NULL; + } else if (PyExceptionClass_Check(cause)) { + fixed_cause = PyObject_CallObject(cause, NULL); + if (fixed_cause == NULL) + goto bad; + } else if (PyExceptionInstance_Check(cause)) { + fixed_cause = cause; + Py_INCREF(fixed_cause); + } else { + PyErr_SetString(PyExc_TypeError, + "exception causes must derive from " + "BaseException"); + goto bad; + } + PyException_SetCause(value, fixed_cause); + } + PyErr_SetObject(type, value); + if (tb) { +#if CYTHON_COMPILING_IN_PYPY + PyObject *tmp_type, *tmp_value, *tmp_tb; + PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb); + Py_INCREF(tb); + PyErr_Restore(tmp_type, tmp_value, tb); + Py_XDECREF(tmp_tb); +#else + PyThreadState *tstate = PyThreadState_GET(); + PyObject* tmp_tb = tstate->curexc_traceback; + if (tb != tmp_tb) { + Py_INCREF(tb); + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_tb); + } +#endif + } +bad: + Py_XDECREF(owned_instance); + return; +} +#endif + +/* HasAttr */ + static CYTHON_INLINE int __Pyx_HasAttr(PyObject *o, PyObject *n) { + PyObject *r; + if (unlikely(!__Pyx_PyBaseString_Check(n))) { + PyErr_SetString(PyExc_TypeError, + "hasattr(): attribute name must be string"); + return -1; + } + r = __Pyx_GetAttr(o, n); + if (unlikely(!r)) { + PyErr_Clear(); + return 0; + } else { + Py_DECREF(r); + return 1; + } +} + +/* RaiseNoneIterError */ + static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { + PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); +} + +/* SaveResetException */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { + *type = tstate->exc_type; + *value = tstate->exc_value; + *tb = tstate->exc_traceback; + Py_XINCREF(*type); + Py_XINCREF(*value); + Py_XINCREF(*tb); +} +static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + tmp_type = tstate->exc_type; + tmp_value = tstate->exc_value; + tmp_tb = tstate->exc_traceback; + tstate->exc_type = type; + tstate->exc_value = value; + tstate->exc_traceback = tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +} +#endif + +/* PyErrExceptionMatches */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) { + PyObject *exc_type = tstate->curexc_type; + if (exc_type == err) return 1; + if (unlikely(!exc_type)) return 0; + return PyErr_GivenExceptionMatches(exc_type, err); +} +#endif + +/* GetException */ + #if CYTHON_FAST_THREAD_STATE +static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { +#else +static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { +#endif + PyObject *local_type, *local_value, *local_tb; +#if CYTHON_FAST_THREAD_STATE + PyObject *tmp_type, *tmp_value, *tmp_tb; + local_type = tstate->curexc_type; + local_value = tstate->curexc_value; + local_tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +#else + PyErr_Fetch(&local_type, &local_value, &local_tb); +#endif + PyErr_NormalizeException(&local_type, &local_value, &local_tb); +#if CYTHON_FAST_THREAD_STATE + if (unlikely(tstate->curexc_type)) +#else + if (unlikely(PyErr_Occurred())) +#endif + goto bad; + #if PY_MAJOR_VERSION >= 3 + if (local_tb) { + if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0)) + goto bad; + } + #endif + Py_XINCREF(local_tb); + Py_XINCREF(local_type); + Py_XINCREF(local_value); + *type = local_type; + *value = local_value; + *tb = local_tb; +#if CYTHON_FAST_THREAD_STATE + tmp_type = tstate->exc_type; + tmp_value = tstate->exc_value; + tmp_tb = tstate->exc_traceback; + tstate->exc_type = local_type; + tstate->exc_value = local_value; + tstate->exc_traceback = local_tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +#else + PyErr_SetExcInfo(local_type, local_value, local_tb); +#endif + return 0; +bad: + *type = 0; + *value = 0; + *tb = 0; + Py_XDECREF(local_type); + Py_XDECREF(local_value); + Py_XDECREF(local_tb); + return -1; +} + +/* SetVTable */ + static int __Pyx_SetVtable(PyObject *dict, void *vtable) { +#if PY_VERSION_HEX >= 0x02070000 + PyObject *ob = PyCapsule_New(vtable, 0, 0); +#else + PyObject *ob = PyCObject_FromVoidPtr(vtable, 0); +#endif + if (!ob) + goto bad; + if (PyDict_SetItem(dict, __pyx_n_s_pyx_vtable, ob) < 0) + goto bad; + Py_DECREF(ob); + return 0; +bad: + Py_XDECREF(ob); + return -1; +} + +/* SetupReduce */ + #define __Pyx_setup_reduce_GET_ATTR_OR_BAD(res, obj, name) res = PyObject_GetAttrString(obj, name); if (res == NULL) goto BAD; +static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) { + int ret; + PyObject *name_attr; + name_attr = PyObject_GetAttrString(meth, "__name__"); + if (name_attr) { + ret = PyObject_RichCompareBool(name_attr, name, Py_EQ); + } else { + ret = -1; + } + if (ret < 0) { + PyErr_Clear(); + ret = 0; + } + Py_XDECREF(name_attr); + return ret; +} +static int __Pyx_setup_reduce(PyObject* type_obj) { + int ret = 0; + PyObject* builtin_object = NULL; + static PyObject *object_reduce = NULL; + static PyObject *object_reduce_ex = NULL; + PyObject *reduce = NULL; + PyObject *reduce_ex = NULL; + PyObject *reduce_cython = NULL; + PyObject *setstate = NULL; + PyObject *setstate_cython = NULL; + if (PyObject_HasAttrString(type_obj, "__getstate__")) goto GOOD; + if (object_reduce_ex == NULL) { + __Pyx_setup_reduce_GET_ATTR_OR_BAD(builtin_object, __pyx_b, "object"); + __Pyx_setup_reduce_GET_ATTR_OR_BAD(object_reduce, builtin_object, "__reduce__"); + __Pyx_setup_reduce_GET_ATTR_OR_BAD(object_reduce_ex, builtin_object, "__reduce_ex__"); + } + __Pyx_setup_reduce_GET_ATTR_OR_BAD(reduce_ex, type_obj, "__reduce_ex__"); + if (reduce_ex == object_reduce_ex) { + __Pyx_setup_reduce_GET_ATTR_OR_BAD(reduce, type_obj, "__reduce__"); + if (object_reduce == reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_n_s_reduce_cython)) { + __Pyx_setup_reduce_GET_ATTR_OR_BAD(reduce_cython, type_obj, "__reduce_cython__"); + ret = PyDict_SetItemString(((PyTypeObject*)type_obj)->tp_dict, "__reduce__", reduce_cython); if (ret < 0) goto BAD; + ret = PyDict_DelItemString(((PyTypeObject*)type_obj)->tp_dict, "__reduce_cython__"); if (ret < 0) goto BAD; + setstate = PyObject_GetAttrString(type_obj, "__setstate__"); + if (!setstate) PyErr_Clear(); + if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_n_s_setstate_cython)) { + __Pyx_setup_reduce_GET_ATTR_OR_BAD(setstate_cython, type_obj, "__setstate_cython__"); + ret = PyDict_SetItemString(((PyTypeObject*)type_obj)->tp_dict, "__setstate__", setstate_cython); if (ret < 0) goto BAD; + ret = PyDict_DelItemString(((PyTypeObject*)type_obj)->tp_dict, "__setstate_cython__"); if (ret < 0) goto BAD; + } + PyType_Modified((PyTypeObject*)type_obj); + } + } + goto GOOD; +BAD: + if (!PyErr_Occurred()) PyErr_Format(PyExc_RuntimeError, "Unable to initialize pickling for %s", ((PyTypeObject*)type_obj)->tp_name); + ret = -1; +GOOD: + Py_XDECREF(builtin_object); + Py_XDECREF(reduce); + Py_XDECREF(reduce_ex); + Py_XDECREF(reduce_cython); + Py_XDECREF(setstate); + Py_XDECREF(setstate_cython); + return ret; +} + +/* CLineInTraceback */ + static int __Pyx_CLineForTraceback(int c_line) { +#ifdef CYTHON_CLINE_IN_TRACEBACK + return ((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0; +#else + PyObject **cython_runtime_dict; + PyObject *use_cline; + cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); + if (unlikely(!cython_runtime_dict)) { + PyObject *ptype, *pvalue, *ptraceback; + PyObject *use_cline_obj; + PyErr_Fetch(&ptype, &pvalue, &ptraceback); + use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); + if (use_cline_obj) { + use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; + Py_DECREF(use_cline_obj); + } else { + use_cline = NULL; + } + PyErr_Restore(ptype, pvalue, ptraceback); + } else { + use_cline = PyDict_GetItem(*_PyObject_GetDictPtr(__pyx_cython_runtime), __pyx_n_s_cline_in_traceback); + } + if (!use_cline) { + c_line = 0; + PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); + } + else if (PyObject_Not(use_cline) != 0) { + c_line = 0; + } + return c_line; +#endif +} + +/* CodeObjectCache */ + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + int start = 0, mid = 0, end = count - 1; + if (end >= 0 && code_line > entries[end].code_line) { + return count; + } + while (start < end) { + mid = start + (end - start) / 2; + if (code_line < entries[mid].code_line) { + end = mid; + } else if (code_line > entries[mid].code_line) { + start = mid + 1; + } else { + return mid; + } + } + if (code_line <= entries[mid].code_line) { + return mid; + } else { + return mid + 1; + } +} +static PyCodeObject *__pyx_find_code_object(int code_line) { + PyCodeObject* code_object; + int pos; + if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { + return NULL; + } + pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); + if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { + return NULL; + } + code_object = __pyx_code_cache.entries[pos].code_object; + Py_INCREF(code_object); + return code_object; +} +static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { + int pos, i; + __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; + if (unlikely(!code_line)) { + return; + } + if (unlikely(!entries)) { + entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); + if (likely(entries)) { + __pyx_code_cache.entries = entries; + __pyx_code_cache.max_count = 64; + __pyx_code_cache.count = 1; + entries[0].code_line = code_line; + entries[0].code_object = code_object; + Py_INCREF(code_object); + } + return; + } + pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); + if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { + PyCodeObject* tmp = entries[pos].code_object; + entries[pos].code_object = code_object; + Py_DECREF(tmp); + return; + } + if (__pyx_code_cache.count == __pyx_code_cache.max_count) { + int new_max = __pyx_code_cache.max_count + 64; + entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( + __pyx_code_cache.entries, (size_t)new_max*sizeof(__Pyx_CodeObjectCacheEntry)); + if (unlikely(!entries)) { + return; + } + __pyx_code_cache.entries = entries; + __pyx_code_cache.max_count = new_max; + } + for (i=__pyx_code_cache.count; i>pos; i--) { + entries[i] = entries[i-1]; + } + entries[pos].code_line = code_line; + entries[pos].code_object = code_object; + __pyx_code_cache.count++; + Py_INCREF(code_object); +} + +/* AddTraceback */ + #include "compile.h" +#include "frameobject.h" +#include "traceback.h" +static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( + const char *funcname, int c_line, + int py_line, const char *filename) { + PyCodeObject *py_code = 0; + PyObject *py_srcfile = 0; + PyObject *py_funcname = 0; + #if PY_MAJOR_VERSION < 3 + py_srcfile = PyString_FromString(filename); + #else + py_srcfile = PyUnicode_FromString(filename); + #endif + if (!py_srcfile) goto bad; + if (c_line) { + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); + #else + py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); + #endif + } + else { + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromString(funcname); + #else + py_funcname = PyUnicode_FromString(funcname); + #endif + } + if (!py_funcname) goto bad; + py_code = __Pyx_PyCode_New( + 0, + 0, + 0, + 0, + 0, + __pyx_empty_bytes, /*PyObject *code,*/ + __pyx_empty_tuple, /*PyObject *consts,*/ + __pyx_empty_tuple, /*PyObject *names,*/ + __pyx_empty_tuple, /*PyObject *varnames,*/ + __pyx_empty_tuple, /*PyObject *freevars,*/ + __pyx_empty_tuple, /*PyObject *cellvars,*/ + py_srcfile, /*PyObject *filename,*/ + py_funcname, /*PyObject *name,*/ + py_line, + __pyx_empty_bytes /*PyObject *lnotab*/ + ); + Py_DECREF(py_srcfile); + Py_DECREF(py_funcname); + return py_code; +bad: + Py_XDECREF(py_srcfile); + Py_XDECREF(py_funcname); + return NULL; +} +static void __Pyx_AddTraceback(const char *funcname, int c_line, + int py_line, const char *filename) { + PyCodeObject *py_code = 0; + PyFrameObject *py_frame = 0; + if (c_line) { + c_line = __Pyx_CLineForTraceback(c_line); + } + py_code = __pyx_find_code_object(c_line ? -c_line : py_line); + if (!py_code) { + py_code = __Pyx_CreateCodeObjectForTraceback( + funcname, c_line, py_line, filename); + if (!py_code) goto bad; + __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); + } + py_frame = PyFrame_New( + PyThreadState_GET(), /*PyThreadState *tstate,*/ + py_code, /*PyCodeObject *code,*/ + __pyx_d, /*PyObject *globals,*/ + 0 /*PyObject *locals*/ + ); + if (!py_frame) goto bad; + __Pyx_PyFrame_SetLineNumber(py_frame, py_line); + PyTraceBack_Here(py_frame); +bad: + Py_XDECREF(py_code); + Py_XDECREF(py_frame); +} + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + const int neg_one = (int) -1, const_zero = (int) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(int) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(int) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(int) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(int), + little, !is_unsigned); + } +} + +/* CIntFromPyVerify */ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) +#define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ + __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) +#define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\ + {\ + func_type value = func_value;\ + if (sizeof(target_type) < sizeof(func_type)) {\ + if (unlikely(value != (func_type) (target_type) value)) {\ + func_type zero = 0;\ + if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\ + return (target_type) -1;\ + if (is_unsigned && unlikely(value < zero))\ + goto raise_neg_overflow;\ + else\ + goto raise_overflow;\ + }\ + }\ + return (target_type) value;\ + } + +#if PY_MAJOR_VERSION < 3 +static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) { + if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags); + if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags); + PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name); + return -1; +} +static void __Pyx_ReleaseBuffer(Py_buffer *view) { + PyObject *obj = view->obj; + if (!obj) return; + if (PyObject_CheckBuffer(obj)) { + PyBuffer_Release(view); + return; + } + if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) { __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view); return; } + Py_DECREF(obj); + view->obj = NULL; +} +#endif + + + /* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + const long neg_one = (long) -1, const_zero = (long) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(long) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(long) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(long) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(long), + little, !is_unsigned); + } +} + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { + const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(Py_intptr_t) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(Py_intptr_t) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(Py_intptr_t) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(Py_intptr_t) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(Py_intptr_t), + little, !is_unsigned); + } +} + +/* Declarations */ + #if CYTHON_CCOMPLEX + #ifdef __cplusplus + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + return ::std::complex< float >(x, y); + } + #else + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + return x + y*(__pyx_t_float_complex)_Complex_I; + } + #endif +#else + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + __pyx_t_float_complex z; + z.real = x; + z.imag = y; + return z; + } +#endif + +/* Arithmetic */ + #if CYTHON_CCOMPLEX +#else + static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + return (a.real == b.real) && (a.imag == b.imag); + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real + b.real; + z.imag = a.imag + b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real - b.real; + z.imag = a.imag - b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real * b.real - a.imag * b.imag; + z.imag = a.real * b.imag + a.imag * b.real; + return z; + } + #if 1 + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + if (b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real); + } else if (fabsf(b.real) >= fabsf(b.imag)) { + if (b.real == 0 && b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.imag); + } else { + float r = b.imag / b.real; + float s = 1.0 / (b.real + b.imag * r); + return __pyx_t_float_complex_from_parts( + (a.real + a.imag * r) * s, (a.imag - a.real * r) * s); + } + } else { + float r = b.real / b.imag; + float s = 1.0 / (b.imag + b.real * r); + return __pyx_t_float_complex_from_parts( + (a.real * r + a.imag) * s, (a.imag * r - a.real) * s); + } + } + #else + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + if (b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real); + } else { + float denom = b.real * b.real + b.imag * b.imag; + return __pyx_t_float_complex_from_parts( + (a.real * b.real + a.imag * b.imag) / denom, + (a.imag * b.real - a.real * b.imag) / denom); + } + } + #endif + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex a) { + __pyx_t_float_complex z; + z.real = -a.real; + z.imag = -a.imag; + return z; + } + static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex a) { + return (a.real == 0) && (a.imag == 0); + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex a) { + __pyx_t_float_complex z; + z.real = a.real; + z.imag = -a.imag; + return z; + } + #if 1 + static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex z) { + #if !defined(HAVE_HYPOT) || defined(_MSC_VER) + return sqrtf(z.real*z.real + z.imag*z.imag); + #else + return hypotf(z.real, z.imag); + #endif + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + float r, lnr, theta, z_r, z_theta; + if (b.imag == 0 && b.real == (int)b.real) { + if (b.real < 0) { + float denom = a.real * a.real + a.imag * a.imag; + a.real = a.real / denom; + a.imag = -a.imag / denom; + b.real = -b.real; + } + switch ((int)b.real) { + case 0: + z.real = 1; + z.imag = 0; + return z; + case 1: + return a; + case 2: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(a, a); + case 3: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(z, a); + case 4: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(z, z); + } + } + if (a.imag == 0) { + if (a.real == 0) { + return a; + } else if (b.imag == 0) { + z.real = powf(a.real, b.real); + z.imag = 0; + return z; + } else if (a.real > 0) { + r = a.real; + theta = 0; + } else { + r = -a.real; + theta = atan2f(0, -1); + } + } else { + r = __Pyx_c_abs_float(a); + theta = atan2f(a.imag, a.real); + } + lnr = logf(r); + z_r = expf(lnr * b.real - theta * b.imag); + z_theta = theta * b.real + lnr * b.imag; + z.real = z_r * cosf(z_theta); + z.imag = z_r * sinf(z_theta); + return z; + } + #endif +#endif + +/* Declarations */ + #if CYTHON_CCOMPLEX + #ifdef __cplusplus + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + return ::std::complex< double >(x, y); + } + #else + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + return x + y*(__pyx_t_double_complex)_Complex_I; + } + #endif +#else + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + __pyx_t_double_complex z; + z.real = x; + z.imag = y; + return z; + } +#endif + +/* Arithmetic */ + #if CYTHON_CCOMPLEX +#else + static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + return (a.real == b.real) && (a.imag == b.imag); + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real + b.real; + z.imag = a.imag + b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real - b.real; + z.imag = a.imag - b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real * b.real - a.imag * b.imag; + z.imag = a.real * b.imag + a.imag * b.real; + return z; + } + #if 1 + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + if (b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real); + } else if (fabs(b.real) >= fabs(b.imag)) { + if (b.real == 0 && b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.imag); + } else { + double r = b.imag / b.real; + double s = 1.0 / (b.real + b.imag * r); + return __pyx_t_double_complex_from_parts( + (a.real + a.imag * r) * s, (a.imag - a.real * r) * s); + } + } else { + double r = b.real / b.imag; + double s = 1.0 / (b.imag + b.real * r); + return __pyx_t_double_complex_from_parts( + (a.real * r + a.imag) * s, (a.imag * r - a.real) * s); + } + } + #else + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + if (b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real); + } else { + double denom = b.real * b.real + b.imag * b.imag; + return __pyx_t_double_complex_from_parts( + (a.real * b.real + a.imag * b.imag) / denom, + (a.imag * b.real - a.real * b.imag) / denom); + } + } + #endif + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex a) { + __pyx_t_double_complex z; + z.real = -a.real; + z.imag = -a.imag; + return z; + } + static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex a) { + return (a.real == 0) && (a.imag == 0); + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex a) { + __pyx_t_double_complex z; + z.real = a.real; + z.imag = -a.imag; + return z; + } + #if 1 + static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex z) { + #if !defined(HAVE_HYPOT) || defined(_MSC_VER) + return sqrt(z.real*z.real + z.imag*z.imag); + #else + return hypot(z.real, z.imag); + #endif + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + double r, lnr, theta, z_r, z_theta; + if (b.imag == 0 && b.real == (int)b.real) { + if (b.real < 0) { + double denom = a.real * a.real + a.imag * a.imag; + a.real = a.real / denom; + a.imag = -a.imag / denom; + b.real = -b.real; + } + switch ((int)b.real) { + case 0: + z.real = 1; + z.imag = 0; + return z; + case 1: + return a; + case 2: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(a, a); + case 3: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(z, a); + case 4: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(z, z); + } + } + if (a.imag == 0) { + if (a.real == 0) { + return a; + } else if (b.imag == 0) { + z.real = pow(a.real, b.real); + z.imag = 0; + return z; + } else if (a.real > 0) { + r = a.real; + theta = 0; + } else { + r = -a.real; + theta = atan2(0, -1); + } + } else { + r = __Pyx_c_abs_double(a); + theta = atan2(a.imag, a.real); + } + lnr = log(r); + z_r = exp(lnr * b.real - theta * b.imag); + z_theta = theta * b.real + lnr * b.imag; + z.real = z_r * cos(z_theta); + z.imag = z_r * sin(z_theta); + return z; + } + #endif +#endif + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(enum NPY_TYPES) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(enum NPY_TYPES) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(enum NPY_TYPES) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(enum NPY_TYPES), + little, !is_unsigned); + } +} + +/* CIntFromPy */ + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + const int neg_one = (int) -1, const_zero = (int) 0; + const int is_unsigned = neg_one > const_zero; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_Check(x))) { + if (sizeof(int) < sizeof(long)) { + __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x)) + } else { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + goto raise_neg_overflow; + } + return (int) val; + } + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (int) 0; + case 1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0]) + case 2: + if (8 * sizeof(int) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) { + return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + case 3: + if (8 * sizeof(int) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) { + return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + case 4: + if (8 * sizeof(int) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) { + return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + } +#endif +#if CYTHON_COMPILING_IN_CPYTHON + if (unlikely(Py_SIZE(x) < 0)) { + goto raise_neg_overflow; + } +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (int) -1; + if (unlikely(result == 1)) + goto raise_neg_overflow; + } +#endif + if (sizeof(int) <= sizeof(unsigned long)) { + __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) +#endif + } + } else { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (int) 0; + case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0])) + case 1: __PYX_VERIFY_RETURN_INT(int, digit, +digits[0]) + case -2: + if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 2: + if (8 * sizeof(int) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case -3: + if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 3: + if (8 * sizeof(int) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case -4: + if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 4: + if (8 * sizeof(int) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { + return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + } +#endif + if (sizeof(int) <= sizeof(long)) { + __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x)) +#endif + } + } + { +#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) + PyErr_SetString(PyExc_RuntimeError, + "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); +#else + int val; + PyObject *v = __Pyx_PyNumber_IntOrLong(x); + #if PY_MAJOR_VERSION < 3 + if (likely(v) && !PyLong_Check(v)) { + PyObject *tmp = v; + v = PyNumber_Long(tmp); + Py_DECREF(tmp); + } + #endif + if (likely(v)) { + int one = 1; int is_little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&val; + int ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); + Py_DECREF(v); + if (likely(!ret)) + return val; + } +#endif + return (int) -1; + } + } else { + int val; + PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); + if (!tmp) return (int) -1; + val = __Pyx_PyInt_As_int(tmp); + Py_DECREF(tmp); + return val; + } +raise_overflow: + PyErr_SetString(PyExc_OverflowError, + "value too large to convert to int"); + return (int) -1; +raise_neg_overflow: + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to int"); + return (int) -1; +} + +/* CIntFromPy */ + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + const long neg_one = (long) -1, const_zero = (long) 0; + const int is_unsigned = neg_one > const_zero; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_Check(x))) { + if (sizeof(long) < sizeof(long)) { + __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x)) + } else { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + goto raise_neg_overflow; + } + return (long) val; + } + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (long) 0; + case 1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0]) + case 2: + if (8 * sizeof(long) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) { + return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + case 3: + if (8 * sizeof(long) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) { + return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + case 4: + if (8 * sizeof(long) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) { + return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + } +#endif +#if CYTHON_COMPILING_IN_CPYTHON + if (unlikely(Py_SIZE(x) < 0)) { + goto raise_neg_overflow; + } +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (long) -1; + if (unlikely(result == 1)) + goto raise_neg_overflow; + } +#endif + if (sizeof(long) <= sizeof(unsigned long)) { + __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) +#endif + } + } else { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (long) 0; + case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0])) + case 1: __PYX_VERIFY_RETURN_INT(long, digit, +digits[0]) + case -2: + if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 2: + if (8 * sizeof(long) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case -3: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 3: + if (8 * sizeof(long) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case -4: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 4: + if (8 * sizeof(long) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + } +#endif + if (sizeof(long) <= sizeof(long)) { + __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x)) +#endif + } + } + { +#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) + PyErr_SetString(PyExc_RuntimeError, + "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); +#else + long val; + PyObject *v = __Pyx_PyNumber_IntOrLong(x); + #if PY_MAJOR_VERSION < 3 + if (likely(v) && !PyLong_Check(v)) { + PyObject *tmp = v; + v = PyNumber_Long(tmp); + Py_DECREF(tmp); + } + #endif + if (likely(v)) { + int one = 1; int is_little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&val; + int ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); + Py_DECREF(v); + if (likely(!ret)) + return val; + } +#endif + return (long) -1; + } + } else { + long val; + PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); + if (!tmp) return (long) -1; + val = __Pyx_PyInt_As_long(tmp); + Py_DECREF(tmp); + return val; + } +raise_overflow: + PyErr_SetString(PyExc_OverflowError, + "value too large to convert to long"); + return (long) -1; +raise_neg_overflow: + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to long"); + return (long) -1; +} + +/* CheckBinaryVersion */ + static int __Pyx_check_binary_version(void) { + char ctversion[4], rtversion[4]; + PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); + PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); + if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) { + char message[200]; + PyOS_snprintf(message, sizeof(message), + "compiletime version %s of module '%.100s' " + "does not match runtime version %s", + ctversion, __Pyx_MODULE_NAME, rtversion); + return PyErr_WarnEx(NULL, message, 1); + } + return 0; +} + +/* ModuleImport */ + #ifndef __PYX_HAVE_RT_ImportModule +#define __PYX_HAVE_RT_ImportModule +static PyObject *__Pyx_ImportModule(const char *name) { + PyObject *py_name = 0; + PyObject *py_module = 0; + py_name = __Pyx_PyIdentifier_FromString(name); + if (!py_name) + goto bad; + py_module = PyImport_Import(py_name); + Py_DECREF(py_name); + return py_module; +bad: + Py_XDECREF(py_name); + return 0; +} +#endif + +/* TypeImport */ + #ifndef __PYX_HAVE_RT_ImportType +#define __PYX_HAVE_RT_ImportType +static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, + size_t size, int strict) +{ + PyObject *py_module = 0; + PyObject *result = 0; + PyObject *py_name = 0; + char warning[200]; + Py_ssize_t basicsize; +#ifdef Py_LIMITED_API + PyObject *py_basicsize; +#endif + py_module = __Pyx_ImportModule(module_name); + if (!py_module) + goto bad; + py_name = __Pyx_PyIdentifier_FromString(class_name); + if (!py_name) + goto bad; + result = PyObject_GetAttr(py_module, py_name); + Py_DECREF(py_name); + py_name = 0; + Py_DECREF(py_module); + py_module = 0; + if (!result) + goto bad; + if (!PyType_Check(result)) { + PyErr_Format(PyExc_TypeError, + "%.200s.%.200s is not a type object", + module_name, class_name); + goto bad; + } +#ifndef Py_LIMITED_API + basicsize = ((PyTypeObject *)result)->tp_basicsize; +#else + py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); + if (!py_basicsize) + goto bad; + basicsize = PyLong_AsSsize_t(py_basicsize); + Py_DECREF(py_basicsize); + py_basicsize = 0; + if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) + goto bad; +#endif + if (!strict && (size_t)basicsize > size) { + PyOS_snprintf(warning, sizeof(warning), + "%s.%s size changed, may indicate binary incompatibility. Expected %zd, got %zd", + module_name, class_name, basicsize, size); + if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; + } + else if ((size_t)basicsize != size) { + PyErr_Format(PyExc_ValueError, + "%.200s.%.200s has the wrong size, try recompiling. Expected %zd, got %zd", + module_name, class_name, basicsize, size); + goto bad; + } + return (PyTypeObject *)result; +bad: + Py_XDECREF(py_module); + Py_XDECREF(result); + return NULL; +} +#endif + +/* InitStrings */ + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + while (t->p) { + #if PY_MAJOR_VERSION < 3 + if (t->is_unicode) { + *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); + } else if (t->intern) { + *t->p = PyString_InternFromString(t->s); + } else { + *t->p = PyString_FromStringAndSize(t->s, t->n - 1); + } + #else + if (t->is_unicode | t->is_str) { + if (t->intern) { + *t->p = PyUnicode_InternFromString(t->s); + } else if (t->encoding) { + *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); + } else { + *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); + } + } else { + *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); + } + #endif + if (!*t->p) + return -1; + if (PyObject_Hash(*t->p) == -1) + PyErr_Clear(); + ++t; + } + return 0; +} + +static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { + return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); +} +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { + Py_ssize_t ignore; + return __Pyx_PyObject_AsStringAndSize(o, &ignore); +} +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { +#if CYTHON_COMPILING_IN_CPYTHON && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) + if ( +#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + __Pyx_sys_getdefaultencoding_not_ascii && +#endif + PyUnicode_Check(o)) { +#if PY_VERSION_HEX < 0x03030000 + char* defenc_c; + PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); + if (!defenc) return NULL; + defenc_c = PyBytes_AS_STRING(defenc); +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + { + char* end = defenc_c + PyBytes_GET_SIZE(defenc); + char* c; + for (c = defenc_c; c < end; c++) { + if ((unsigned char) (*c) >= 128) { + PyUnicode_AsASCIIString(o); + return NULL; + } + } + } +#endif + *length = PyBytes_GET_SIZE(defenc); + return defenc_c; +#else + if (__Pyx_PyUnicode_READY(o) == -1) return NULL; +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + if (PyUnicode_IS_ASCII(o)) { + *length = PyUnicode_GET_LENGTH(o); + return PyUnicode_AsUTF8(o); + } else { + PyUnicode_AsASCIIString(o); + return NULL; + } +#else + return PyUnicode_AsUTF8AndSize(o, length); +#endif +#endif + } else +#endif +#if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE)) + if (PyByteArray_Check(o)) { + *length = PyByteArray_GET_SIZE(o); + return PyByteArray_AS_STRING(o); + } else +#endif + { + char* result; + int r = PyBytes_AsStringAndSize(o, &result, length); + if (unlikely(r < 0)) { + return NULL; + } else { + return result; + } + } +} +static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { + int is_true = x == Py_True; + if (is_true | (x == Py_False) | (x == Py_None)) return is_true; + else return PyObject_IsTrue(x); +} +static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) { +#if CYTHON_USE_TYPE_SLOTS + PyNumberMethods *m; +#endif + const char *name = NULL; + PyObject *res = NULL; +#if PY_MAJOR_VERSION < 3 + if (PyInt_Check(x) || PyLong_Check(x)) +#else + if (PyLong_Check(x)) +#endif + return __Pyx_NewRef(x); +#if CYTHON_USE_TYPE_SLOTS + m = Py_TYPE(x)->tp_as_number; + #if PY_MAJOR_VERSION < 3 + if (m && m->nb_int) { + name = "int"; + res = PyNumber_Int(x); + } + else if (m && m->nb_long) { + name = "long"; + res = PyNumber_Long(x); + } + #else + if (m && m->nb_int) { + name = "int"; + res = PyNumber_Long(x); + } + #endif +#else + res = PyNumber_Int(x); +#endif + if (res) { +#if PY_MAJOR_VERSION < 3 + if (!PyInt_Check(res) && !PyLong_Check(res)) { +#else + if (!PyLong_Check(res)) { +#endif + PyErr_Format(PyExc_TypeError, + "__%.4s__ returned non-%.4s (type %.200s)", + name, name, Py_TYPE(res)->tp_name); + Py_DECREF(res); + return NULL; + } + } + else if (!PyErr_Occurred()) { + PyErr_SetString(PyExc_TypeError, + "an integer is required"); + } + return res; +} +static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { + Py_ssize_t ival; + PyObject *x; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(b))) { + if (sizeof(Py_ssize_t) >= sizeof(long)) + return PyInt_AS_LONG(b); + else + return PyInt_AsSsize_t(x); + } +#endif + if (likely(PyLong_CheckExact(b))) { + #if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)b)->ob_digit; + const Py_ssize_t size = Py_SIZE(b); + if (likely(__Pyx_sst_abs(size) <= 1)) { + ival = likely(size) ? digits[0] : 0; + if (size == -1) ival = -ival; + return ival; + } else { + switch (size) { + case 2: + if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { + return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -2: + if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case 3: + if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { + return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -3: + if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case 4: + if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { + return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -4: + if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + } + } + #endif + return PyLong_AsSsize_t(b); + } + x = PyNumber_Index(b); + if (!x) return -1; + ival = PyInt_AsSsize_t(x); + Py_DECREF(x); + return ival; +} +static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { + return PyInt_FromSize_t(ival); +} + + +#endif /* Py_PYTHON_H */ diff --git a/ccd/models/tmask.c b/ccd/models/tmask.c new file mode 100644 index 0000000..3531b45 --- /dev/null +++ b/ccd/models/tmask.c @@ -0,0 +1,8693 @@ +/* Generated by Cython 0.26 */ + +/* BEGIN: Cython Metadata +{ + "distutils": { + "depends": [ + "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h", + "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h" + ], + "include_dirs": [ + "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include" + ], + "name": "ccd.models.tmask", + "sources": [ + "ccd/models/tmask.pyx" + ] + }, + "module_name": "ccd.models.tmask" +} +END: Cython Metadata */ + +#define PY_SSIZE_T_CLEAN +#include "Python.h" +#ifndef Py_PYTHON_H + #error Python headers needed to compile C extensions, please install development version of Python. +#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) + #error Cython requires Python 2.6+ or Python 3.2+. +#else +#define CYTHON_ABI "0_26" +#include +#ifndef offsetof + #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) +#endif +#if !defined(WIN32) && !defined(MS_WINDOWS) + #ifndef __stdcall + #define __stdcall + #endif + #ifndef __cdecl + #define __cdecl + #endif + #ifndef __fastcall + #define __fastcall + #endif +#endif +#ifndef DL_IMPORT + #define DL_IMPORT(t) t +#endif +#ifndef DL_EXPORT + #define DL_EXPORT(t) t +#endif +#define __PYX_COMMA , +#ifndef HAVE_LONG_LONG + #if PY_VERSION_HEX >= 0x03030000 || (PY_MAJOR_VERSION == 2 && PY_VERSION_HEX >= 0x02070000) + #define HAVE_LONG_LONG + #endif +#endif +#ifndef PY_LONG_LONG + #define PY_LONG_LONG LONG_LONG +#endif +#ifndef Py_HUGE_VAL + #define Py_HUGE_VAL HUGE_VAL +#endif +#ifdef PYPY_VERSION + #define CYTHON_COMPILING_IN_PYPY 1 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #undef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 0 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #undef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #undef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 1 + #undef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 0 + #undef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 0 + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 +#elif defined(PYSTON_VERSION) + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 1 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 +#else + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 1 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #if PY_MAJOR_VERSION < 3 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #elif !defined(CYTHON_USE_ASYNC_SLOTS) + #define CYTHON_USE_ASYNC_SLOTS 1 + #endif + #if PY_VERSION_HEX < 0x02070000 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #elif !defined(CYTHON_USE_PYLONG_INTERNALS) + #define CYTHON_USE_PYLONG_INTERNALS 1 + #endif + #ifndef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 1 + #endif + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #if PY_VERSION_HEX < 0x030300F0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #elif !defined(CYTHON_USE_UNICODE_WRITER) + #define CYTHON_USE_UNICODE_WRITER 1 + #endif + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #ifndef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 1 + #endif + #ifndef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 1 + #endif +#endif +#if !defined(CYTHON_FAST_PYCCALL) +#define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1) +#endif +#if CYTHON_USE_PYLONG_INTERNALS + #include "longintrepr.h" + #undef SHIFT + #undef BASE + #undef MASK +#endif +#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag) + #define Py_OptimizeFlag 0 +#endif +#define __PYX_BUILD_PY_SSIZE_T "n" +#define CYTHON_FORMAT_SSIZE_T "z" +#if PY_MAJOR_VERSION < 3 + #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ + PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) + #define __Pyx_DefaultClassType PyClass_Type +#else + #define __Pyx_BUILTIN_MODULE_NAME "builtins" + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ + PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) + #define __Pyx_DefaultClassType PyType_Type +#endif +#ifndef Py_TPFLAGS_CHECKTYPES + #define Py_TPFLAGS_CHECKTYPES 0 +#endif +#ifndef Py_TPFLAGS_HAVE_INDEX + #define Py_TPFLAGS_HAVE_INDEX 0 +#endif +#ifndef Py_TPFLAGS_HAVE_NEWBUFFER + #define Py_TPFLAGS_HAVE_NEWBUFFER 0 +#endif +#ifndef Py_TPFLAGS_HAVE_FINALIZE + #define Py_TPFLAGS_HAVE_FINALIZE 0 +#endif +#if PY_VERSION_HEX < 0x030700A0 || !defined(METH_FASTCALL) + #ifndef METH_FASTCALL + #define METH_FASTCALL 0x80 + #endif + typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, Py_ssize_t nargs); + typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject **args, + Py_ssize_t nargs, PyObject *kwnames); +#else + #define __Pyx_PyCFunctionFast _PyCFunctionFast + #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords +#endif +#if CYTHON_FAST_PYCCALL +#define __Pyx_PyFastCFunction_Check(func)\ + ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))))) +#else +#define __Pyx_PyFastCFunction_Check(func) 0 +#endif +#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) + #define CYTHON_PEP393_ENABLED 1 + #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\ + 0 : _PyUnicode_Ready((PyObject *)(op))) + #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) + #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u) + #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u) + #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) + #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u))) +#else + #define CYTHON_PEP393_ENABLED 0 + #define PyUnicode_1BYTE_KIND 1 + #define PyUnicode_2BYTE_KIND 2 + #define PyUnicode_4BYTE_KIND 4 + #define __Pyx_PyUnicode_READY(op) (0) + #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) + #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111) + #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE)) + #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) + #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u)) +#endif +#if CYTHON_COMPILING_IN_PYPY + #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) + #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) +#else + #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) + #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ + PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains) + #define PyUnicode_Contains(u, s) PySequence_Contains(u, s) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check) + #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format) + #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc) + #define PyObject_Malloc(s) PyMem_Malloc(s) + #define PyObject_Free(p) PyMem_Free(p) + #define PyObject_Realloc(p) PyMem_Realloc(p) +#endif +#if CYTHON_COMPILING_IN_PYSTON + #define __Pyx_PyCode_HasFreeVars(co) PyCode_HasFreeVars(co) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno) +#else + #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno) +#endif +#define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) +#define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) +#else + #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) +#endif +#if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII) + #define PyObject_ASCII(o) PyObject_Repr(o) +#endif +#if PY_MAJOR_VERSION >= 3 + #define PyBaseString_Type PyUnicode_Type + #define PyStringObject PyUnicodeObject + #define PyString_Type PyUnicode_Type + #define PyString_Check PyUnicode_Check + #define PyString_CheckExact PyUnicode_CheckExact +#endif +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) + #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj) +#else + #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj)) + #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) +#endif +#ifndef PySet_CheckExact + #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) +#endif +#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) +#define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception) +#if PY_MAJOR_VERSION >= 3 + #define PyIntObject PyLongObject + #define PyInt_Type PyLong_Type + #define PyInt_Check(op) PyLong_Check(op) + #define PyInt_CheckExact(op) PyLong_CheckExact(op) + #define PyInt_FromString PyLong_FromString + #define PyInt_FromUnicode PyLong_FromUnicode + #define PyInt_FromLong PyLong_FromLong + #define PyInt_FromSize_t PyLong_FromSize_t + #define PyInt_FromSsize_t PyLong_FromSsize_t + #define PyInt_AsLong PyLong_AsLong + #define PyInt_AS_LONG PyLong_AS_LONG + #define PyInt_AsSsize_t PyLong_AsSsize_t + #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask + #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask + #define PyNumber_Int PyNumber_Long +#endif +#if PY_MAJOR_VERSION >= 3 + #define PyBoolObject PyLongObject +#endif +#if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY + #ifndef PyUnicode_InternFromString + #define PyUnicode_InternFromString(s) PyUnicode_FromString(s) + #endif +#endif +#if PY_VERSION_HEX < 0x030200A4 + typedef long Py_hash_t; + #define __Pyx_PyInt_FromHash_t PyInt_FromLong + #define __Pyx_PyInt_AsHash_t PyInt_AsLong +#else + #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t + #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t +#endif +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func)) +#else + #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) +#endif +#ifndef __has_attribute + #define __has_attribute(x) 0 +#endif +#ifndef __has_cpp_attribute + #define __has_cpp_attribute(x) 0 +#endif +#if CYTHON_USE_ASYNC_SLOTS + #if PY_VERSION_HEX >= 0x030500B1 + #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods + #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async) + #else + typedef struct { + unaryfunc am_await; + unaryfunc am_aiter; + unaryfunc am_anext; + } __Pyx_PyAsyncMethodsStruct; + #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved)) + #endif +#else + #define __Pyx_PyType_AsAsync(obj) NULL +#endif +#ifndef CYTHON_RESTRICT + #if defined(__GNUC__) + #define CYTHON_RESTRICT __restrict__ + #elif defined(_MSC_VER) && _MSC_VER >= 1400 + #define CYTHON_RESTRICT __restrict + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_RESTRICT restrict + #else + #define CYTHON_RESTRICT + #endif +#endif +#ifndef CYTHON_UNUSED +# if defined(__GNUC__) +# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +#endif +#ifndef CYTHON_MAYBE_UNUSED_VAR +# if defined(__cplusplus) + template void CYTHON_MAYBE_UNUSED_VAR( const T& ) { } +# else +# define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x) +# endif +#endif +#ifndef CYTHON_NCP_UNUSED +# if CYTHON_COMPILING_IN_CPYTHON +# define CYTHON_NCP_UNUSED +# else +# define CYTHON_NCP_UNUSED CYTHON_UNUSED +# endif +#endif +#define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) +#ifdef _MSC_VER + #ifndef _MSC_STDINT_H_ + #if _MSC_VER < 1300 + typedef unsigned char uint8_t; + typedef unsigned int uint32_t; + #else + typedef unsigned __int8 uint8_t; + typedef unsigned __int32 uint32_t; + #endif + #endif +#else + #include +#endif +#ifndef CYTHON_FALLTHROUGH + #ifdef __cplusplus + #if __has_cpp_attribute(fallthrough) + #define CYTHON_FALLTHROUGH [[fallthrough]] + #elif __has_cpp_attribute(clang::fallthrough) + #define CYTHON_FALLTHROUGH [[clang::fallthrough]] + #endif + #endif + #ifndef CYTHON_FALLTHROUGH + #if __has_attribute(fallthrough) || (defined(__GNUC__) && defined(__attribute__)) + #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) + #else + #define CYTHON_FALLTHROUGH + #endif + #endif +#endif + +#ifndef CYTHON_INLINE + #if defined(__clang__) + #define CYTHON_INLINE __inline__ __attribute__ ((__unused__)) + #elif defined(__GNUC__) + #define CYTHON_INLINE __inline__ + #elif defined(_MSC_VER) + #define CYTHON_INLINE __inline + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_INLINE inline + #else + #define CYTHON_INLINE + #endif +#endif + +#if defined(WIN32) || defined(MS_WINDOWS) + #define _USE_MATH_DEFINES +#endif +#include +#ifdef NAN +#define __PYX_NAN() ((float) NAN) +#else +static CYTHON_INLINE float __PYX_NAN() { + float value; + memset(&value, 0xFF, sizeof(value)); + return value; +} +#endif +#if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL) +#define __Pyx_truncl trunc +#else +#define __Pyx_truncl truncl +#endif + + +#define __PYX_ERR(f_index, lineno, Ln_error) \ +{ \ + __pyx_filename = __pyx_f[f_index]; __pyx_lineno = lineno; __pyx_clineno = __LINE__; goto Ln_error; \ +} + +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) +#else + #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) +#endif + +#ifndef __PYX_EXTERN_C + #ifdef __cplusplus + #define __PYX_EXTERN_C extern "C" + #else + #define __PYX_EXTERN_C extern + #endif +#endif + +#define __PYX_HAVE__ccd__models__tmask +#define __PYX_HAVE_API__ccd__models__tmask +#include +#include +#include +#include "numpy/arrayobject.h" +#include "numpy/ufuncobject.h" +#include "pythread.h" +#ifdef _OPENMP +#include +#endif /* _OPENMP */ + +#ifdef PYREX_WITHOUT_ASSERTIONS +#define CYTHON_WITHOUT_ASSERTIONS +#endif + +typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding; + const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; + +#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 +#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0 +#define __PYX_DEFAULT_STRING_ENCODING "" +#define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString +#define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize +#define __Pyx_uchar_cast(c) ((unsigned char)c) +#define __Pyx_long_cast(x) ((long)x) +#define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\ + (sizeof(type) < sizeof(Py_ssize_t)) ||\ + (sizeof(type) > sizeof(Py_ssize_t) &&\ + likely(v < (type)PY_SSIZE_T_MAX ||\ + v == (type)PY_SSIZE_T_MAX) &&\ + (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\ + v == (type)PY_SSIZE_T_MIN))) ||\ + (sizeof(type) == sizeof(Py_ssize_t) &&\ + (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\ + v == (type)PY_SSIZE_T_MAX))) ) +#if defined (__cplusplus) && __cplusplus >= 201103L + #include + #define __Pyx_sst_abs(value) std::abs(value) +#elif SIZEOF_INT >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) abs(value) +#elif SIZEOF_LONG >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) labs(value) +#elif defined (_MSC_VER) && defined (_M_X64) + #define __Pyx_sst_abs(value) _abs64(value) +#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define __Pyx_sst_abs(value) llabs(value) +#elif defined (__GNUC__) + #define __Pyx_sst_abs(value) __builtin_llabs(value) +#else + #define __Pyx_sst_abs(value) ((value<0) ? -value : value) +#endif +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); +#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) +#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) +#define __Pyx_PyBytes_FromString PyBytes_FromString +#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize +static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); +#if PY_MAJOR_VERSION < 3 + #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString + #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize +#else + #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString + #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize +#endif +#define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) +#define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) +#define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) +#define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s) +#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s) +#if PY_MAJOR_VERSION < 3 +static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) +{ + const Py_UNICODE *u_end = u; + while (*u_end++) ; + return (size_t)(u_end - u - 1); +} +#else +#define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen +#endif +#define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) +#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode +#define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode +#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj) +#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None) +#define __Pyx_PyBool_FromLong(b) ((b) ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False)) +static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); +static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x); +static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); +static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); +#if CYTHON_ASSUME_SAFE_MACROS +#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) +#else +#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) +#endif +#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) +#if PY_MAJOR_VERSION >= 3 +#define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x)) +#else +#define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x)) +#endif +#define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x)) +#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII +static int __Pyx_sys_getdefaultencoding_not_ascii; +static int __Pyx_init_sys_getdefaultencoding_params(void) { + PyObject* sys; + PyObject* default_encoding = NULL; + PyObject* ascii_chars_u = NULL; + PyObject* ascii_chars_b = NULL; + const char* default_encoding_c; + sys = PyImport_ImportModule("sys"); + if (!sys) goto bad; + default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL); + Py_DECREF(sys); + if (!default_encoding) goto bad; + default_encoding_c = PyBytes_AsString(default_encoding); + if (!default_encoding_c) goto bad; + if (strcmp(default_encoding_c, "ascii") == 0) { + __Pyx_sys_getdefaultencoding_not_ascii = 0; + } else { + char ascii_chars[128]; + int c; + for (c = 0; c < 128; c++) { + ascii_chars[c] = c; + } + __Pyx_sys_getdefaultencoding_not_ascii = 1; + ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); + if (!ascii_chars_u) goto bad; + ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); + if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { + PyErr_Format( + PyExc_ValueError, + "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", + default_encoding_c); + goto bad; + } + Py_DECREF(ascii_chars_u); + Py_DECREF(ascii_chars_b); + } + Py_DECREF(default_encoding); + return 0; +bad: + Py_XDECREF(default_encoding); + Py_XDECREF(ascii_chars_u); + Py_XDECREF(ascii_chars_b); + return -1; +} +#endif +#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 +#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) +#else +#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) +#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT +static char* __PYX_DEFAULT_STRING_ENCODING; +static int __Pyx_init_sys_getdefaultencoding_params(void) { + PyObject* sys; + PyObject* default_encoding = NULL; + char* default_encoding_c; + sys = PyImport_ImportModule("sys"); + if (!sys) goto bad; + default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); + Py_DECREF(sys); + if (!default_encoding) goto bad; + default_encoding_c = PyBytes_AsString(default_encoding); + if (!default_encoding_c) goto bad; + __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c)); + if (!__PYX_DEFAULT_STRING_ENCODING) goto bad; + strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); + Py_DECREF(default_encoding); + return 0; +bad: + Py_XDECREF(default_encoding); + return -1; +} +#endif +#endif + + +/* Test for GCC > 2.95 */ +#if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))) + #define likely(x) __builtin_expect(!!(x), 1) + #define unlikely(x) __builtin_expect(!!(x), 0) +#else /* !__GNUC__ or GCC < 2.95 */ + #define likely(x) (x) + #define unlikely(x) (x) +#endif /* __GNUC__ */ +static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } + +static PyObject *__pyx_m; +static PyObject *__pyx_d; +static PyObject *__pyx_b; +static PyObject *__pyx_cython_runtime; +static PyObject *__pyx_empty_tuple; +static PyObject *__pyx_empty_bytes; +static PyObject *__pyx_empty_unicode; +static int __pyx_lineno; +static int __pyx_clineno = 0; +static const char * __pyx_cfilenm= __FILE__; +static const char *__pyx_filename; + +/* Header.proto */ +#if !defined(CYTHON_CCOMPLEX) + #if defined(__cplusplus) + #define CYTHON_CCOMPLEX 1 + #elif defined(_Complex_I) + #define CYTHON_CCOMPLEX 1 + #else + #define CYTHON_CCOMPLEX 0 + #endif +#endif +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + #include + #else + #include + #endif +#endif +#if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__) + #undef _Complex_I + #define _Complex_I 1.0fj +#endif + + +static const char *__pyx_f[] = { + "ccd/models/tmask.pyx", + "__init__.pxd", + "type.pxd", + "bool.pxd", + "complex.pxd", +}; +/* BufferFormatStructs.proto */ +#define IS_UNSIGNED(type) (((type) -1) > 0) +struct __Pyx_StructField_; +#define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0) +typedef struct { + const char* name; + struct __Pyx_StructField_* fields; + size_t size; + size_t arraysize[8]; + int ndim; + char typegroup; + char is_unsigned; + int flags; +} __Pyx_TypeInfo; +typedef struct __Pyx_StructField_ { + __Pyx_TypeInfo* type; + const char* name; + size_t offset; +} __Pyx_StructField; +typedef struct { + __Pyx_StructField* field; + size_t parent_offset; +} __Pyx_BufFmt_StackElem; +typedef struct { + __Pyx_StructField root; + __Pyx_BufFmt_StackElem* head; + size_t fmt_offset; + size_t new_count, enc_count; + size_t struct_alignment; + int is_complex; + char enc_type; + char new_packmode; + char enc_packmode; + char is_valid_array; +} __Pyx_BufFmt_Context; + + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":725 + * # in Cython to enable them only on the right systems. + * + * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t + */ +typedef npy_int8 __pyx_t_5numpy_int8_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":726 + * + * ctypedef npy_int8 int8_t + * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< + * ctypedef npy_int32 int32_t + * ctypedef npy_int64 int64_t + */ +typedef npy_int16 __pyx_t_5numpy_int16_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":727 + * ctypedef npy_int8 int8_t + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< + * ctypedef npy_int64 int64_t + * #ctypedef npy_int96 int96_t + */ +typedef npy_int32 __pyx_t_5numpy_int32_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":728 + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t + * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< + * #ctypedef npy_int96 int96_t + * #ctypedef npy_int128 int128_t + */ +typedef npy_int64 __pyx_t_5numpy_int64_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":732 + * #ctypedef npy_int128 int128_t + * + * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< + * ctypedef npy_uint16 uint16_t + * ctypedef npy_uint32 uint32_t + */ +typedef npy_uint8 __pyx_t_5numpy_uint8_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":733 + * + * ctypedef npy_uint8 uint8_t + * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< + * ctypedef npy_uint32 uint32_t + * ctypedef npy_uint64 uint64_t + */ +typedef npy_uint16 __pyx_t_5numpy_uint16_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":734 + * ctypedef npy_uint8 uint8_t + * ctypedef npy_uint16 uint16_t + * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< + * ctypedef npy_uint64 uint64_t + * #ctypedef npy_uint96 uint96_t + */ +typedef npy_uint32 __pyx_t_5numpy_uint32_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":735 + * ctypedef npy_uint16 uint16_t + * ctypedef npy_uint32 uint32_t + * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< + * #ctypedef npy_uint96 uint96_t + * #ctypedef npy_uint128 uint128_t + */ +typedef npy_uint64 __pyx_t_5numpy_uint64_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":739 + * #ctypedef npy_uint128 uint128_t + * + * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< + * ctypedef npy_float64 float64_t + * #ctypedef npy_float80 float80_t + */ +typedef npy_float32 __pyx_t_5numpy_float32_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":740 + * + * ctypedef npy_float32 float32_t + * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< + * #ctypedef npy_float80 float80_t + * #ctypedef npy_float128 float128_t + */ +typedef npy_float64 __pyx_t_5numpy_float64_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":749 + * # The int types are mapped a bit surprising -- + * # numpy.int corresponds to 'l' and numpy.long to 'q' + * ctypedef npy_long int_t # <<<<<<<<<<<<<< + * ctypedef npy_longlong long_t + * ctypedef npy_longlong longlong_t + */ +typedef npy_long __pyx_t_5numpy_int_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":750 + * # numpy.int corresponds to 'l' and numpy.long to 'q' + * ctypedef npy_long int_t + * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< + * ctypedef npy_longlong longlong_t + * + */ +typedef npy_longlong __pyx_t_5numpy_long_t; 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else goto_error; +#endif + +/* BufferFormatCheck.proto */ +static CYTHON_INLINE int __Pyx_GetBufferAndValidate(Py_buffer* buf, PyObject* obj, + __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack); +static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info); +static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts); +static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, + __Pyx_BufFmt_StackElem* stack, + __Pyx_TypeInfo* type); + +/* PyObjectGetAttrStr.proto */ +#if CYTHON_USE_TYPE_SLOTS +static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { + PyTypeObject* tp = Py_TYPE(obj); + if (likely(tp->tp_getattro)) + return tp->tp_getattro(obj, attr_name); +#if PY_MAJOR_VERSION < 3 + if (likely(tp->tp_getattr)) + return tp->tp_getattr(obj, PyString_AS_STRING(attr_name)); +#endif + return PyObject_GetAttr(obj, attr_name); +} +#else +#define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n) +#endif + +/* GetBuiltinName.proto */ +static PyObject *__Pyx_GetBuiltinName(PyObject *name); + +/* GetModuleGlobalName.proto */ +static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name); + +/* BufferIndexError.proto */ +static void __Pyx_RaiseBufferIndexError(int axis); + +#define __Pyx_BufPtrStrided1d(type, buf, i0, s0) (type)((char*)buf + i0 * s0) +/* PyCFunctionFastCall.proto */ +#if CYTHON_FAST_PYCCALL +static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs); +#else +#define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL) +#endif + +/* PyFunctionFastCall.proto */ +#if CYTHON_FAST_PYCALL +#define __Pyx_PyFunction_FastCall(func, args, nargs)\ + __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL) +#if 1 || PY_VERSION_HEX < 0x030600B1 +static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs); +#else +#define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs) +#endif +#endif + +/* PyObjectCall.proto */ +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw); +#else +#define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) +#endif + +/* PyObjectCallMethO.proto */ +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); +#endif + +/* PyObjectCallOneArg.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); + +/* ExtTypeTest.proto */ +static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); + +/* PyThreadStateGet.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate; +#define __Pyx_PyThreadState_assign __pyx_tstate = PyThreadState_GET(); +#else +#define __Pyx_PyThreadState_declare +#define __Pyx_PyThreadState_assign +#endif + +/* PyErrFetchRestore.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else +#define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) +#endif + +/* RaiseException.proto */ +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); + +/* WriteUnraisableException.proto */ +static void __Pyx_WriteUnraisable(const char *name, int clineno, + int lineno, const char *filename, + int full_traceback, int nogil); + +/* DictGetItem.proto */ +#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY +static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { + PyObject *value; + value = PyDict_GetItemWithError(d, key); + if (unlikely(!value)) { + if (!PyErr_Occurred()) { + PyObject* args = PyTuple_Pack(1, key); + if (likely(args)) + PyErr_SetObject(PyExc_KeyError, args); + Py_XDECREF(args); + } + return NULL; + } + Py_INCREF(value); + return value; +} +#else + #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) +#endif + +/* RaiseTooManyValuesToUnpack.proto */ +static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); + +/* RaiseNeedMoreValuesToUnpack.proto */ +static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); + +/* RaiseNoneIterError.proto */ +static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); + +/* SaveResetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +#else +#define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb) +#define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb) +#endif + +/* PyErrExceptionMatches.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err) +static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err); +#else +#define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err) +#endif + +/* GetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb) +static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else +static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); +#endif + +/* Import.proto */ +static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); + +/* ImportFrom.proto */ +static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); + +/* CLineInTraceback.proto */ +static int __Pyx_CLineForTraceback(int c_line); + +/* CodeObjectCache.proto */ +typedef struct { + PyCodeObject* code_object; + int code_line; +} __Pyx_CodeObjectCacheEntry; +struct __Pyx_CodeObjectCache { + int count; + int max_count; + __Pyx_CodeObjectCacheEntry* entries; +}; +static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL}; +static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); +static PyCodeObject *__pyx_find_code_object(int code_line); +static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); + +/* AddTraceback.proto */ +static void __Pyx_AddTraceback(const char *funcname, int c_line, + int py_line, const char *filename); + +/* BufferStructDeclare.proto */ +typedef struct { + Py_ssize_t shape, strides, suboffsets; +} __Pyx_Buf_DimInfo; +typedef struct { + size_t refcount; + Py_buffer pybuffer; +} __Pyx_Buffer; +typedef struct { + __Pyx_Buffer *rcbuffer; + char *data; + __Pyx_Buf_DimInfo diminfo[8]; +} __Pyx_LocalBuf_ND; + +#if PY_MAJOR_VERSION < 3 + static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags); + static void __Pyx_ReleaseBuffer(Py_buffer *view); +#else + #define __Pyx_GetBuffer PyObject_GetBuffer + #define __Pyx_ReleaseBuffer PyBuffer_Release +#endif + + +/* None.proto */ +static Py_ssize_t __Pyx_zeros[] = {0, 0, 0, 0, 0, 0, 0, 0}; +static Py_ssize_t __Pyx_minusones[] = {-1, -1, -1, -1, -1, -1, -1, -1}; + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value); + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); + +/* RealImag.proto */ +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + #define __Pyx_CREAL(z) ((z).real()) + #define __Pyx_CIMAG(z) ((z).imag()) + #else + #define __Pyx_CREAL(z) (__real__(z)) + #define __Pyx_CIMAG(z) (__imag__(z)) + #endif +#else + #define __Pyx_CREAL(z) ((z).real) + #define __Pyx_CIMAG(z) ((z).imag) +#endif +#if defined(__cplusplus) && CYTHON_CCOMPLEX\ + && (defined(_WIN32) || defined(__clang__) || (defined(__GNUC__) && (__GNUC__ >= 5 || __GNUC__ == 4 && __GNUC_MINOR__ >= 4 )) || __cplusplus >= 201103) + #define __Pyx_SET_CREAL(z,x) ((z).real(x)) + #define __Pyx_SET_CIMAG(z,y) ((z).imag(y)) +#else + #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x) + #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y) +#endif + +/* Arithmetic.proto */ +#if CYTHON_CCOMPLEX + #define __Pyx_c_eq_float(a, b) ((a)==(b)) + #define __Pyx_c_sum_float(a, b) ((a)+(b)) + #define __Pyx_c_diff_float(a, b) ((a)-(b)) + #define __Pyx_c_prod_float(a, b) ((a)*(b)) + #define __Pyx_c_quot_float(a, b) ((a)/(b)) + #define __Pyx_c_neg_float(a) (-(a)) + #ifdef __cplusplus + #define __Pyx_c_is_zero_float(z) ((z)==(float)0) + #define __Pyx_c_conj_float(z) (::std::conj(z)) + #if 1 + #define __Pyx_c_abs_float(z) (::std::abs(z)) + #define __Pyx_c_pow_float(a, b) (::std::pow(a, b)) + #endif + #else + #define __Pyx_c_is_zero_float(z) ((z)==0) + #define __Pyx_c_conj_float(z) (conjf(z)) + #if 1 + #define __Pyx_c_abs_float(z) (cabsf(z)) + #define __Pyx_c_pow_float(a, b) (cpowf(a, b)) + #endif + #endif +#else + static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex); + static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex); + #if 1 + static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex, __pyx_t_float_complex); + #endif +#endif + +/* Arithmetic.proto */ +#if CYTHON_CCOMPLEX + #define __Pyx_c_eq_double(a, b) ((a)==(b)) + #define __Pyx_c_sum_double(a, b) ((a)+(b)) + #define __Pyx_c_diff_double(a, b) ((a)-(b)) + #define __Pyx_c_prod_double(a, b) ((a)*(b)) + #define __Pyx_c_quot_double(a, b) ((a)/(b)) + #define __Pyx_c_neg_double(a) (-(a)) + #ifdef __cplusplus + #define __Pyx_c_is_zero_double(z) ((z)==(double)0) + #define __Pyx_c_conj_double(z) (::std::conj(z)) + #if 1 + #define __Pyx_c_abs_double(z) (::std::abs(z)) + #define __Pyx_c_pow_double(a, b) (::std::pow(a, b)) + #endif + #else + #define __Pyx_c_is_zero_double(z) ((z)==0) + #define __Pyx_c_conj_double(z) (conj(z)) + #if 1 + #define __Pyx_c_abs_double(z) (cabs(z)) + #define __Pyx_c_pow_double(a, b) (cpow(a, b)) + #endif + #endif +#else + static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex); + static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex); + #if 1 + static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex, __pyx_t_double_complex); + #endif +#endif + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value); + +/* CIntFromPy.proto */ +static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); + +/* CIntFromPy.proto */ +static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); + +/* CheckBinaryVersion.proto */ +static int __Pyx_check_binary_version(void); + +/* FunctionExport.proto */ +static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig); + +/* PyIdentifierFromString.proto */ +#if !defined(__Pyx_PyIdentifier_FromString) +#if PY_MAJOR_VERSION < 3 + #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s) +#else + #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s) +#endif +#endif + +/* ModuleImport.proto */ +static PyObject *__Pyx_ImportModule(const char *name); + +/* TypeImport.proto */ +static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict); + +/* InitStrings.proto */ +static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); + + +/* Module declarations from 'cpython.buffer' */ + +/* Module declarations from 'libc.string' */ + +/* Module declarations from 'libc.stdio' */ + +/* Module declarations from '__builtin__' */ + +/* Module declarations from 'cpython.type' */ +static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0; + +/* Module declarations from 'cpython.version' */ + +/* Module declarations from 'cpython.exc' */ + +/* Module declarations from 'cpython.module' */ + +/* Module declarations from 'cpython.mem' */ + +/* Module declarations from 'cpython.tuple' */ + +/* Module declarations from 'cpython.list' */ + +/* Module declarations from 'cpython.sequence' */ + +/* Module declarations from 'cpython.mapping' */ + +/* Module declarations from 'cpython.iterator' */ + +/* Module declarations from 'cpython.number' */ + +/* Module declarations from 'cpython.int' */ + +/* Module declarations from '__builtin__' */ + +/* Module declarations from 'cpython.bool' */ +static PyTypeObject *__pyx_ptype_7cpython_4bool_bool = 0; + +/* Module declarations from 'cpython.long' */ + +/* Module declarations from 'cpython.float' */ + +/* Module declarations from '__builtin__' */ + +/* Module declarations from 'cpython.complex' */ +static PyTypeObject *__pyx_ptype_7cpython_7complex_complex = 0; + +/* Module declarations from 'cpython.string' */ + +/* Module declarations from 'cpython.unicode' */ + +/* Module declarations from 'cpython.dict' */ + +/* Module declarations from 'cpython.instance' */ + +/* Module declarations from 'cpython.function' */ + +/* Module declarations from 'cpython.method' */ + +/* Module declarations from 'cpython.weakref' */ + +/* Module declarations from 'cpython.getargs' */ + +/* Module declarations from 'cpython.pythread' */ + +/* Module declarations from 'cpython.pystate' */ + +/* Module declarations from 'cpython.cobject' */ + +/* Module declarations from 'cpython.oldbuffer' */ + +/* Module declarations from 'cpython.set' */ + +/* Module declarations from 'cpython.bytes' */ + +/* Module declarations from 'cpython.pycapsule' */ + +/* Module declarations from 'cpython' */ + +/* Module declarations from 'cpython.object' */ + +/* Module declarations from 'cpython.ref' */ + +/* Module declarations from 'libc.stdlib' */ + +/* Module declarations from 'numpy' */ + +/* Module declarations from 'numpy' */ +static PyTypeObject *__pyx_ptype_5numpy_dtype = 0; +static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0; +static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0; +static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0; +static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0; +static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/ + +/* Module declarations from 'ccd.models.tmask' */ +static PyArrayObject *__pyx_f_3ccd_6models_5tmask_tmask_coefficient_matrix(PyArrayObject *, __pyx_t_3ccd_6models_5tmask_FTYPE_t); /*proto*/ +static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5tmask_LTYPE_t = { "LTYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_5tmask_LTYPE_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_3ccd_6models_5tmask_LTYPE_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_3ccd_6models_5tmask_LTYPE_t), 0 }; +static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5tmask_STYPE_t = { "STYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_5tmask_STYPE_t), { 0 }, 0, 'R', 0, 0 }; +#define __Pyx_MODULE_NAME "ccd.models.tmask" +int __pyx_module_is_main_ccd__models__tmask = 0; + +/* Implementation of 'ccd.models.tmask' */ +static PyObject *__pyx_builtin_ValueError; +static PyObject *__pyx_builtin_range; +static PyObject *__pyx_builtin_RuntimeError; +static PyObject *__pyx_builtin_ImportError; +static const char __pyx_k_F[] = "F"; +static const char __pyx_k_np[] = "np"; +static const char __pyx_k_pi[] = "pi"; +static const char __pyx_k_RLM[] = "RLM"; +static const char __pyx_k_abs[] = "abs"; +static const char __pyx_k_cos[] = "cos"; +static const char __pyx_k_fit[] = "fit"; +static const char __pyx_k_log[] = "log"; +static const char __pyx_k_sin[] = "sin"; +static const char __pyx_k_ceil[] = "ceil"; +static const char __pyx_k_main[] = "__main__"; +static const char __pyx_k_name[] = "__name__"; +static const char __pyx_k_ones[] = "ones"; +static const char __pyx_k_test[] = "__test__"; +static const char __pyx_k_dtype[] = "dtype"; +static const char __pyx_k_numpy[] = "numpy"; +static const char __pyx_k_order[] = "order"; +static const char __pyx_k_range[] = "range"; +static const char __pyx_k_shape[] = "shape"; +static const char __pyx_k_zeros[] = "zeros"; +static const char __pyx_k_import[] = "__import__"; +static const char __pyx_k_logging[] = "logging"; +static const char __pyx_k_maxiter[] = "maxiter"; +static const char __pyx_k_predict[] = "predict"; +static const char __pyx_k_getLogger[] = "getLogger"; +static const char __pyx_k_ValueError[] = "ValueError"; +static const char __pyx_k_ImportError[] = "ImportError"; +static const char __pyx_k_RuntimeError[] = "RuntimeError"; +static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; +static const char __pyx_k_ccd_models_robust_fit[] = "ccd.models.robust_fit"; +static const char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; 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+ ctx->is_complex = 0; + return 0; +} +static CYTHON_INLINE PyObject * +__pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp) +{ + const char *ts = *tsp; + int i = 0, number; + int ndim = ctx->head->field->type->ndim; +; + ++ts; + if (ctx->new_count != 1) { + PyErr_SetString(PyExc_ValueError, + "Cannot handle repeated arrays in format string"); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + while (*ts && *ts != ')') { + switch (*ts) { + case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue; + default: break; + } + number = __Pyx_BufFmt_ExpectNumber(&ts); + if (number == -1) return NULL; + if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i]) + return PyErr_Format(PyExc_ValueError, + "Expected a dimension of size %zu, got %d", + ctx->head->field->type->arraysize[i], number); + if (*ts != ',' && *ts != ')') + return PyErr_Format(PyExc_ValueError, + "Expected a comma in format string, got '%c'", *ts); + if (*ts == ',') ts++; + i++; + } + if (i != ndim) + return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d", + ctx->head->field->type->ndim, i); + if (!*ts) { + PyErr_SetString(PyExc_ValueError, + "Unexpected end of format string, expected ')'"); + return NULL; + } + ctx->is_valid_array = 1; + ctx->new_count = 1; + *tsp = ++ts; + return Py_None; +} +static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) { + int got_Z = 0; + while (1) { + switch(*ts) { + case 0: + if (ctx->enc_type != 0 && ctx->head == NULL) { + __Pyx_BufFmt_RaiseExpected(ctx); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + if (ctx->head != NULL) { + __Pyx_BufFmt_RaiseExpected(ctx); + return NULL; + } + return ts; + case ' ': + case '\r': + case '\n': + ++ts; + break; + case '<': + if (!__Pyx_IsLittleEndian()) { + PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler"); + return NULL; + } + ctx->new_packmode = '='; + ++ts; + break; + case '>': + case '!': + if (__Pyx_IsLittleEndian()) { + PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler"); + return NULL; + } + ctx->new_packmode = '='; + ++ts; + break; + case '=': + case '@': + case '^': + ctx->new_packmode = *ts++; + break; + case 'T': + { + const char* ts_after_sub; + size_t i, struct_count = ctx->new_count; + size_t struct_alignment = ctx->struct_alignment; + ctx->new_count = 1; + ++ts; + if (*ts != '{') { + PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'"); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_type = 0; + ctx->enc_count = 0; + ctx->struct_alignment = 0; + ++ts; + ts_after_sub = ts; + for (i = 0; i != struct_count; ++i) { + ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts); + if (!ts_after_sub) return NULL; + } + ts = ts_after_sub; + if (struct_alignment) ctx->struct_alignment = struct_alignment; + } + break; + case '}': + { + size_t alignment = ctx->struct_alignment; + ++ts; + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_type = 0; + if (alignment && ctx->fmt_offset % alignment) { + ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment); + } + } + return ts; + case 'x': + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->fmt_offset += ctx->new_count; + ctx->new_count = 1; + ctx->enc_count = 0; + ctx->enc_type = 0; + ctx->enc_packmode = ctx->new_packmode; + ++ts; + break; + case 'Z': + got_Z = 1; + ++ts; + if (*ts != 'f' && *ts != 'd' && *ts != 'g') { + __Pyx_BufFmt_RaiseUnexpectedChar('Z'); + return NULL; + } + case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I': + case 'l': case 'L': case 'q': case 'Q': + case 'f': case 'd': case 'g': + case 'O': case 'p': + if (ctx->enc_type == *ts && got_Z == ctx->is_complex && + ctx->enc_packmode == ctx->new_packmode) { + ctx->enc_count += ctx->new_count; + ctx->new_count = 1; + got_Z = 0; + ++ts; + break; + } + case 's': + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_count = ctx->new_count; + ctx->enc_packmode = ctx->new_packmode; + ctx->enc_type = *ts; + ctx->is_complex = got_Z; + ++ts; + ctx->new_count = 1; + got_Z = 0; + break; + case ':': + ++ts; + while(*ts != ':') ++ts; + ++ts; + break; + case '(': + if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL; + break; + default: + { + int number = __Pyx_BufFmt_ExpectNumber(&ts); + if (number == -1) return NULL; + ctx->new_count = (size_t)number; + } + } + } +} +static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) { + buf->buf = NULL; + buf->obj = NULL; + buf->strides = __Pyx_zeros; + buf->shape = __Pyx_zeros; + buf->suboffsets = __Pyx_minusones; +} +static CYTHON_INLINE int __Pyx_GetBufferAndValidate( + Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, + int nd, int cast, __Pyx_BufFmt_StackElem* stack) +{ + if (obj == Py_None || obj == NULL) { + __Pyx_ZeroBuffer(buf); + return 0; + } + buf->buf = NULL; + if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail; + if (buf->ndim != nd) { + PyErr_Format(PyExc_ValueError, + "Buffer has wrong number of dimensions (expected %d, got %d)", + nd, buf->ndim); + goto fail; + } + if (!cast) { + __Pyx_BufFmt_Context ctx; + __Pyx_BufFmt_Init(&ctx, stack, dtype); + if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail; + } + if ((unsigned)buf->itemsize != dtype->size) { + PyErr_Format(PyExc_ValueError, + "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)", + buf->itemsize, (buf->itemsize > 1) ? "s" : "", + dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : ""); + goto fail; + } + if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones; + return 0; +fail:; + __Pyx_ZeroBuffer(buf); + return -1; +} +static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { + if (info->buf == NULL) return; + if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL; + __Pyx_ReleaseBuffer(info); +} + +/* GetBuiltinName */ + static PyObject *__Pyx_GetBuiltinName(PyObject *name) { + PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name); + if (unlikely(!result)) { + PyErr_Format(PyExc_NameError, +#if PY_MAJOR_VERSION >= 3 + "name '%U' is not defined", name); +#else + "name '%.200s' is not defined", PyString_AS_STRING(name)); +#endif + } + return result; +} + +/* GetModuleGlobalName */ + static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { + PyObject *result; +#if !CYTHON_AVOID_BORROWED_REFS + result = PyDict_GetItem(__pyx_d, name); + if (likely(result)) { + Py_INCREF(result); + } else { +#else + result = PyObject_GetItem(__pyx_d, name); + if (!result) { + PyErr_Clear(); +#endif + result = __Pyx_GetBuiltinName(name); + } + return result; +} + +/* BufferIndexError */ + static void __Pyx_RaiseBufferIndexError(int axis) { + PyErr_Format(PyExc_IndexError, + "Out of bounds on buffer access (axis %d)", axis); +} + +/* PyCFunctionFastCall */ + #if CYTHON_FAST_PYCCALL +static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, PyObject **args, Py_ssize_t nargs) { + PyCFunctionObject *func = (PyCFunctionObject*)func_obj; + PyCFunction meth = PyCFunction_GET_FUNCTION(func); + PyObject *self = PyCFunction_GET_SELF(func); + int flags = PyCFunction_GET_FLAGS(func); + assert(PyCFunction_Check(func)); + assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))); + assert(nargs >= 0); + assert(nargs == 0 || args != NULL); + /* _PyCFunction_FastCallDict() must not be called with an exception set, + because it may clear it (directly or indirectly) and so the + caller loses its exception */ + assert(!PyErr_Occurred()); + if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) { + return (*((__Pyx_PyCFunctionFastWithKeywords)meth)) (self, args, nargs, NULL); + } else { + return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs); + } +} +#endif + +/* PyFunctionFastCall */ + #if CYTHON_FAST_PYCALL +#include "frameobject.h" +static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na, + PyObject *globals) { + PyFrameObject *f; + PyThreadState *tstate = PyThreadState_GET(); + PyObject **fastlocals; + Py_ssize_t i; + PyObject *result; + assert(globals != NULL); + /* XXX Perhaps we should create a specialized + PyFrame_New() that doesn't take locals, but does + take builtins without sanity checking them. + */ + assert(tstate != NULL); + f = PyFrame_New(tstate, co, globals, NULL); + if (f == NULL) { + return NULL; + } + fastlocals = f->f_localsplus; + for (i = 0; i < na; i++) { + Py_INCREF(*args); + fastlocals[i] = *args++; + } + result = PyEval_EvalFrameEx(f,0); + ++tstate->recursion_depth; + Py_DECREF(f); + --tstate->recursion_depth; + return result; +} +#if 1 || PY_VERSION_HEX < 0x030600B1 +static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs) { + PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func); + PyObject *globals = PyFunction_GET_GLOBALS(func); + PyObject *argdefs = PyFunction_GET_DEFAULTS(func); + PyObject *closure; +#if PY_MAJOR_VERSION >= 3 + PyObject *kwdefs; +#endif + PyObject *kwtuple, **k; + PyObject **d; + Py_ssize_t nd; + Py_ssize_t nk; + PyObject *result; + assert(kwargs == NULL || PyDict_Check(kwargs)); + nk = kwargs ? PyDict_Size(kwargs) : 0; + if (Py_EnterRecursiveCall((char*)" while calling a Python object")) { + return NULL; + } + if ( +#if PY_MAJOR_VERSION >= 3 + co->co_kwonlyargcount == 0 && +#endif + likely(kwargs == NULL || nk == 0) && + co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) { + if (argdefs == NULL && co->co_argcount == nargs) { + result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals); + goto done; + } + else if (nargs == 0 && argdefs != NULL + && co->co_argcount == Py_SIZE(argdefs)) { + /* function called with no arguments, but all parameters have + a default value: use default values as arguments .*/ + args = &PyTuple_GET_ITEM(argdefs, 0); + result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals); + goto done; + } + } + if (kwargs != NULL) { + Py_ssize_t pos, i; + kwtuple = PyTuple_New(2 * nk); + if (kwtuple == NULL) { + result = NULL; + goto done; + } + k = &PyTuple_GET_ITEM(kwtuple, 0); + pos = i = 0; + while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) { + Py_INCREF(k[i]); + Py_INCREF(k[i+1]); + i += 2; + } + nk = i / 2; + } + else { + kwtuple = NULL; + k = NULL; + } + closure = PyFunction_GET_CLOSURE(func); +#if PY_MAJOR_VERSION >= 3 + kwdefs = PyFunction_GET_KW_DEFAULTS(func); +#endif + if (argdefs != NULL) { + d = &PyTuple_GET_ITEM(argdefs, 0); + nd = Py_SIZE(argdefs); + } + else { + d = NULL; + nd = 0; + } +#if PY_MAJOR_VERSION >= 3 + result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL, + args, nargs, + k, (int)nk, + d, (int)nd, kwdefs, closure); +#else + result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL, + args, nargs, + k, (int)nk, + d, (int)nd, closure); +#endif + Py_XDECREF(kwtuple); +done: + Py_LeaveRecursiveCall(); + return result; +} +#endif +#endif + +/* PyObjectCall */ + #if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { + PyObject *result; + ternaryfunc call = func->ob_type->tp_call; + if (unlikely(!call)) + return PyObject_Call(func, arg, kw); + if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) + return NULL; + result = (*call)(func, arg, kw); + Py_LeaveRecursiveCall(); + if (unlikely(!result) && unlikely(!PyErr_Occurred())) { + PyErr_SetString( + PyExc_SystemError, + "NULL result without error in PyObject_Call"); + } + return result; +} +#endif + +/* PyObjectCallMethO */ + #if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { + PyObject *self, *result; + PyCFunction cfunc; + cfunc = PyCFunction_GET_FUNCTION(func); + self = PyCFunction_GET_SELF(func); + if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) + return NULL; + result = cfunc(self, arg); + Py_LeaveRecursiveCall(); + if (unlikely(!result) && unlikely(!PyErr_Occurred())) { + PyErr_SetString( + PyExc_SystemError, + "NULL result without error in PyObject_Call"); + } + return result; +} +#endif + +/* PyObjectCallOneArg */ + #if CYTHON_COMPILING_IN_CPYTHON +static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) { + PyObject *result; + PyObject *args = PyTuple_New(1); + if (unlikely(!args)) return NULL; + Py_INCREF(arg); + PyTuple_SET_ITEM(args, 0, arg); + result = __Pyx_PyObject_Call(func, args, NULL); + Py_DECREF(args); + return result; +} +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { +#if CYTHON_FAST_PYCALL + if (PyFunction_Check(func)) { + return __Pyx_PyFunction_FastCall(func, &arg, 1); + } +#endif + if (likely(PyCFunction_Check(func))) { + if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { + return __Pyx_PyObject_CallMethO(func, arg); +#if CYTHON_FAST_PYCCALL + } else if (PyCFunction_GET_FLAGS(func) & METH_FASTCALL) { + return __Pyx_PyCFunction_FastCall(func, &arg, 1); +#endif + } + } + return __Pyx__PyObject_CallOneArg(func, arg); +} +#else +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { + PyObject *result; + PyObject *args = PyTuple_Pack(1, arg); + if (unlikely(!args)) return NULL; + result = __Pyx_PyObject_Call(func, args, NULL); + Py_DECREF(args); + return result; +} +#endif + +/* ExtTypeTest */ + static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + if (likely(PyObject_TypeCheck(obj, type))) + return 1; + PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", + Py_TYPE(obj)->tp_name, type->tp_name); + return 0; +} + +/* PyErrFetchRestore */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + tmp_type = tstate->curexc_type; + tmp_value = tstate->curexc_value; + tmp_tb = tstate->curexc_traceback; + tstate->curexc_type = type; + tstate->curexc_value = value; + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +} +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { + *type = tstate->curexc_type; + *value = tstate->curexc_value; + *tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +} +#endif + +/* RaiseException */ + #if PY_MAJOR_VERSION < 3 +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, + CYTHON_UNUSED PyObject *cause) { + __Pyx_PyThreadState_declare + Py_XINCREF(type); + if (!value || value == Py_None) + value = NULL; + else + Py_INCREF(value); + if (!tb || tb == Py_None) + tb = NULL; + else { + Py_INCREF(tb); + if (!PyTraceBack_Check(tb)) { + PyErr_SetString(PyExc_TypeError, + "raise: arg 3 must be a traceback or None"); + goto raise_error; + } + } + if (PyType_Check(type)) { +#if CYTHON_COMPILING_IN_PYPY + if (!value) { + Py_INCREF(Py_None); + value = Py_None; + } +#endif + PyErr_NormalizeException(&type, &value, &tb); + } else { + if (value) { + PyErr_SetString(PyExc_TypeError, + "instance exception may not have a separate value"); + goto raise_error; + } + value = type; + type = (PyObject*) Py_TYPE(type); + Py_INCREF(type); + if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { + PyErr_SetString(PyExc_TypeError, + "raise: exception class must be a subclass of BaseException"); + goto raise_error; + } + } + __Pyx_PyThreadState_assign + __Pyx_ErrRestore(type, value, tb); + return; +raise_error: + Py_XDECREF(value); + Py_XDECREF(type); + Py_XDECREF(tb); + return; +} +#else +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { + PyObject* owned_instance = NULL; + if (tb == Py_None) { + tb = 0; + } else if (tb && !PyTraceBack_Check(tb)) { + PyErr_SetString(PyExc_TypeError, + "raise: arg 3 must be a traceback or None"); + goto bad; + } + if (value == Py_None) + value = 0; + if (PyExceptionInstance_Check(type)) { + if (value) { + PyErr_SetString(PyExc_TypeError, + "instance exception may not have a separate value"); + goto bad; + } + value = type; + type = (PyObject*) Py_TYPE(value); + } else if (PyExceptionClass_Check(type)) { + PyObject *instance_class = NULL; + if (value && PyExceptionInstance_Check(value)) { + instance_class = (PyObject*) Py_TYPE(value); + if (instance_class != type) { + int is_subclass = PyObject_IsSubclass(instance_class, type); + if (!is_subclass) { + instance_class = NULL; + } else if (unlikely(is_subclass == -1)) { + goto bad; + } else { + type = instance_class; + } + } + } + if (!instance_class) { + PyObject *args; + if (!value) + args = PyTuple_New(0); + else if (PyTuple_Check(value)) { + Py_INCREF(value); + args = value; + } else + args = PyTuple_Pack(1, value); + if (!args) + goto bad; + owned_instance = PyObject_Call(type, args, NULL); + Py_DECREF(args); + if (!owned_instance) + goto bad; + value = owned_instance; + if (!PyExceptionInstance_Check(value)) { + PyErr_Format(PyExc_TypeError, + "calling %R should have returned an instance of " + "BaseException, not %R", + type, Py_TYPE(value)); + goto bad; + } + } + } else { + PyErr_SetString(PyExc_TypeError, + "raise: exception class must be a subclass of BaseException"); + goto bad; + } +#if PY_VERSION_HEX >= 0x03030000 + if (cause) { +#else + if (cause && cause != Py_None) { +#endif + PyObject *fixed_cause; + if (cause == Py_None) { + fixed_cause = NULL; + } else if (PyExceptionClass_Check(cause)) { + fixed_cause = PyObject_CallObject(cause, NULL); + if (fixed_cause == NULL) + goto bad; + } else if (PyExceptionInstance_Check(cause)) { + fixed_cause = cause; + Py_INCREF(fixed_cause); + } else { + PyErr_SetString(PyExc_TypeError, + "exception causes must derive from " + "BaseException"); + goto bad; + } + PyException_SetCause(value, fixed_cause); + } + PyErr_SetObject(type, value); + if (tb) { +#if CYTHON_COMPILING_IN_PYPY + PyObject *tmp_type, *tmp_value, *tmp_tb; + PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb); + Py_INCREF(tb); + PyErr_Restore(tmp_type, tmp_value, tb); + Py_XDECREF(tmp_tb); +#else + PyThreadState *tstate = PyThreadState_GET(); + PyObject* tmp_tb = tstate->curexc_traceback; + if (tb != tmp_tb) { + Py_INCREF(tb); + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_tb); + } +#endif + } +bad: + Py_XDECREF(owned_instance); + return; +} +#endif + +/* WriteUnraisableException */ + static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, + CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename, + int full_traceback, CYTHON_UNUSED int nogil) { + PyObject *old_exc, *old_val, *old_tb; + PyObject *ctx; + __Pyx_PyThreadState_declare +#ifdef WITH_THREAD + PyGILState_STATE state; + if (nogil) + state = PyGILState_Ensure(); +#ifdef _MSC_VER + else state = (PyGILState_STATE)-1; +#endif +#endif + __Pyx_PyThreadState_assign + __Pyx_ErrFetch(&old_exc, &old_val, &old_tb); + if (full_traceback) { + Py_XINCREF(old_exc); + Py_XINCREF(old_val); + Py_XINCREF(old_tb); + __Pyx_ErrRestore(old_exc, old_val, old_tb); + PyErr_PrintEx(1); + } + #if PY_MAJOR_VERSION < 3 + ctx = PyString_FromString(name); + #else + ctx = PyUnicode_FromString(name); + #endif + __Pyx_ErrRestore(old_exc, old_val, old_tb); + if (!ctx) { + PyErr_WriteUnraisable(Py_None); + } else { + PyErr_WriteUnraisable(ctx); + Py_DECREF(ctx); + } +#ifdef WITH_THREAD + if (nogil) + PyGILState_Release(state); +#endif +} + +/* RaiseTooManyValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { + PyErr_Format(PyExc_ValueError, + "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); +} + +/* RaiseNeedMoreValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { + PyErr_Format(PyExc_ValueError, + "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", + index, (index == 1) ? "" : "s"); +} + +/* RaiseNoneIterError */ + static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { + PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); +} + +/* SaveResetException */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { + *type = tstate->exc_type; + *value = tstate->exc_value; + *tb = tstate->exc_traceback; + Py_XINCREF(*type); + Py_XINCREF(*value); + Py_XINCREF(*tb); +} +static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + tmp_type = tstate->exc_type; + tmp_value = tstate->exc_value; + tmp_tb = tstate->exc_traceback; + tstate->exc_type = type; + tstate->exc_value = value; + tstate->exc_traceback = tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +} +#endif + +/* PyErrExceptionMatches */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) { + PyObject *exc_type = tstate->curexc_type; + if (exc_type == err) return 1; + if (unlikely(!exc_type)) return 0; + return PyErr_GivenExceptionMatches(exc_type, err); +} +#endif + +/* GetException */ + #if CYTHON_FAST_THREAD_STATE +static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { +#else +static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { +#endif + PyObject *local_type, *local_value, *local_tb; +#if CYTHON_FAST_THREAD_STATE + PyObject *tmp_type, *tmp_value, *tmp_tb; + local_type = tstate->curexc_type; + local_value = tstate->curexc_value; + local_tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +#else + PyErr_Fetch(&local_type, &local_value, &local_tb); +#endif + PyErr_NormalizeException(&local_type, &local_value, &local_tb); +#if CYTHON_FAST_THREAD_STATE + if (unlikely(tstate->curexc_type)) +#else + if (unlikely(PyErr_Occurred())) +#endif + goto bad; + #if PY_MAJOR_VERSION >= 3 + if (local_tb) { + if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0)) + goto bad; + } + #endif + Py_XINCREF(local_tb); + Py_XINCREF(local_type); + Py_XINCREF(local_value); + *type = local_type; + *value = local_value; + *tb = local_tb; +#if CYTHON_FAST_THREAD_STATE + tmp_type = tstate->exc_type; + tmp_value = tstate->exc_value; + tmp_tb = tstate->exc_traceback; + tstate->exc_type = local_type; + tstate->exc_value = local_value; + tstate->exc_traceback = local_tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +#else + PyErr_SetExcInfo(local_type, local_value, local_tb); +#endif + return 0; +bad: + *type = 0; + *value = 0; + *tb = 0; + Py_XDECREF(local_type); + Py_XDECREF(local_value); + Py_XDECREF(local_tb); + return -1; +} + +/* Import */ + static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { + PyObject *empty_list = 0; + PyObject *module = 0; + PyObject *global_dict = 0; + PyObject *empty_dict = 0; + PyObject *list; + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_import; + py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); + if (!py_import) + goto bad; + #endif + if (from_list) + list = from_list; + else { + empty_list = PyList_New(0); + if (!empty_list) + goto bad; + list = empty_list; + } + global_dict = PyModule_GetDict(__pyx_m); + if (!global_dict) + goto bad; + empty_dict = PyDict_New(); + if (!empty_dict) + goto bad; + { + #if PY_MAJOR_VERSION >= 3 + if (level == -1) { + if (strchr(__Pyx_MODULE_NAME, '.')) { + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_level = PyInt_FromLong(1); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, 1); + #endif + if (!module) { + if (!PyErr_ExceptionMatches(PyExc_ImportError)) + goto bad; + PyErr_Clear(); + } + } + level = 0; + } + #endif + if (!module) { + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_level = PyInt_FromLong(level); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, level); + #endif + } + } +bad: + #if PY_VERSION_HEX < 0x03030000 + Py_XDECREF(py_import); + #endif + Py_XDECREF(empty_list); + Py_XDECREF(empty_dict); + return module; +} + +/* ImportFrom */ + static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { + PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); + if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { + PyErr_Format(PyExc_ImportError, + #if PY_MAJOR_VERSION < 3 + "cannot import name %.230s", PyString_AS_STRING(name)); + #else + "cannot import name %S", name); + #endif + } + return value; +} + +/* CLineInTraceback */ + static int __Pyx_CLineForTraceback(int c_line) { +#ifdef CYTHON_CLINE_IN_TRACEBACK + return ((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0; +#else + PyObject **cython_runtime_dict; + PyObject *use_cline; + cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); + if (unlikely(!cython_runtime_dict)) { + PyObject *ptype, *pvalue, *ptraceback; + PyObject *use_cline_obj; + PyErr_Fetch(&ptype, &pvalue, &ptraceback); + use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); + if (use_cline_obj) { + use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; + Py_DECREF(use_cline_obj); + } else { + use_cline = NULL; + } + PyErr_Restore(ptype, pvalue, ptraceback); + } else { + use_cline = PyDict_GetItem(*_PyObject_GetDictPtr(__pyx_cython_runtime), __pyx_n_s_cline_in_traceback); + } + if (!use_cline) { + c_line = 0; + PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); + } + else if (PyObject_Not(use_cline) != 0) { + c_line = 0; + } + return c_line; +#endif +} + +/* CodeObjectCache */ + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + int start = 0, mid = 0, end = count - 1; + if (end >= 0 && code_line > entries[end].code_line) { + return count; + } + while (start < end) { + mid = start + (end - start) / 2; + if (code_line < entries[mid].code_line) { + end = mid; + } else if (code_line > entries[mid].code_line) { + start = mid + 1; + } else { + return mid; + } + } + if (code_line <= entries[mid].code_line) { + return mid; + } else { + return mid + 1; + } +} +static PyCodeObject *__pyx_find_code_object(int code_line) { + PyCodeObject* code_object; + int pos; + if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { + return NULL; + } + pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); + if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { + return NULL; + } + code_object = __pyx_code_cache.entries[pos].code_object; + Py_INCREF(code_object); + return code_object; +} +static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { + int pos, i; + __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; + if (unlikely(!code_line)) { + return; + } + if (unlikely(!entries)) { + entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); + if (likely(entries)) { + __pyx_code_cache.entries = entries; + __pyx_code_cache.max_count = 64; + __pyx_code_cache.count = 1; + entries[0].code_line = code_line; + entries[0].code_object = code_object; + Py_INCREF(code_object); + } + return; + } + pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); + if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { + PyCodeObject* tmp = entries[pos].code_object; + entries[pos].code_object = code_object; + Py_DECREF(tmp); + return; + } + if (__pyx_code_cache.count == __pyx_code_cache.max_count) { + int new_max = __pyx_code_cache.max_count + 64; + entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( + __pyx_code_cache.entries, (size_t)new_max*sizeof(__Pyx_CodeObjectCacheEntry)); + if (unlikely(!entries)) { + return; + } + __pyx_code_cache.entries = entries; + __pyx_code_cache.max_count = new_max; + } + for (i=__pyx_code_cache.count; i>pos; i--) { + entries[i] = entries[i-1]; + } + entries[pos].code_line = code_line; + entries[pos].code_object = code_object; + __pyx_code_cache.count++; + Py_INCREF(code_object); +} + +/* AddTraceback */ + #include "compile.h" +#include "frameobject.h" +#include "traceback.h" +static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( + const char *funcname, int c_line, + int py_line, const char *filename) { + PyCodeObject *py_code = 0; + PyObject *py_srcfile = 0; + PyObject *py_funcname = 0; + #if PY_MAJOR_VERSION < 3 + py_srcfile = PyString_FromString(filename); + #else + py_srcfile = PyUnicode_FromString(filename); + #endif + if (!py_srcfile) goto bad; + if (c_line) { + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); + #else + py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); + #endif + } + else { + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromString(funcname); + #else + py_funcname = PyUnicode_FromString(funcname); + #endif + } + if (!py_funcname) goto bad; + py_code = __Pyx_PyCode_New( + 0, + 0, + 0, + 0, + 0, + __pyx_empty_bytes, /*PyObject *code,*/ + __pyx_empty_tuple, /*PyObject *consts,*/ + __pyx_empty_tuple, /*PyObject *names,*/ + __pyx_empty_tuple, /*PyObject *varnames,*/ + __pyx_empty_tuple, /*PyObject *freevars,*/ + __pyx_empty_tuple, /*PyObject *cellvars,*/ + py_srcfile, /*PyObject *filename,*/ + py_funcname, /*PyObject *name,*/ + py_line, + __pyx_empty_bytes /*PyObject *lnotab*/ + ); + Py_DECREF(py_srcfile); + Py_DECREF(py_funcname); + return py_code; +bad: + Py_XDECREF(py_srcfile); + Py_XDECREF(py_funcname); + return NULL; +} +static void __Pyx_AddTraceback(const char *funcname, int c_line, + int py_line, const char *filename) { + PyCodeObject *py_code = 0; + PyFrameObject *py_frame = 0; + if (c_line) { + c_line = __Pyx_CLineForTraceback(c_line); + } + py_code = __pyx_find_code_object(c_line ? -c_line : py_line); + if (!py_code) { + py_code = __Pyx_CreateCodeObjectForTraceback( + funcname, c_line, py_line, filename); + if (!py_code) goto bad; + __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); + } + py_frame = PyFrame_New( + PyThreadState_GET(), /*PyThreadState *tstate,*/ + py_code, /*PyCodeObject *code,*/ + __pyx_d, /*PyObject *globals,*/ + 0 /*PyObject *locals*/ + ); + if (!py_frame) goto bad; + __Pyx_PyFrame_SetLineNumber(py_frame, py_line); + PyTraceBack_Here(py_frame); +bad: + Py_XDECREF(py_code); + Py_XDECREF(py_frame); +} + +#if PY_MAJOR_VERSION < 3 +static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) { + if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags); + if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags); + PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name); + return -1; +} +static void __Pyx_ReleaseBuffer(Py_buffer *view) { + PyObject *obj = view->obj; + if (!obj) return; + if (PyObject_CheckBuffer(obj)) { + PyBuffer_Release(view); + return; + } + if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) { __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view); return; } + Py_DECREF(obj); + view->obj = NULL; +} +#endif + + + /* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { + const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(Py_intptr_t) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(Py_intptr_t) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(Py_intptr_t) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(Py_intptr_t) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(Py_intptr_t), + little, !is_unsigned); + } +} + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + const int neg_one = (int) -1, const_zero = (int) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(int) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(int) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(int) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(int), + little, !is_unsigned); + } +} + +/* Declarations */ + #if CYTHON_CCOMPLEX + #ifdef __cplusplus + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + return ::std::complex< float >(x, y); + } + #else + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + return x + y*(__pyx_t_float_complex)_Complex_I; + } + #endif +#else + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + __pyx_t_float_complex z; + z.real = x; + z.imag = y; + return z; + } +#endif + +/* Arithmetic */ + #if CYTHON_CCOMPLEX +#else + static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + return (a.real == b.real) && (a.imag == b.imag); + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real + b.real; + z.imag = a.imag + b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real - b.real; + z.imag = a.imag - b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real * b.real - a.imag * b.imag; + z.imag = a.real * b.imag + a.imag * b.real; + return z; + } + #if 1 + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + if (b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real); + } else if (fabsf(b.real) >= fabsf(b.imag)) { + if (b.real == 0 && b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.imag); + } else { + float r = b.imag / b.real; + float s = 1.0 / (b.real + b.imag * r); + return __pyx_t_float_complex_from_parts( + (a.real + a.imag * r) * s, (a.imag - a.real * r) * s); + } + } else { + float r = b.real / b.imag; + float s = 1.0 / (b.imag + b.real * r); + return __pyx_t_float_complex_from_parts( + (a.real * r + a.imag) * s, (a.imag * r - a.real) * s); + } + } + #else + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + if (b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real); + } else { + float denom = b.real * b.real + b.imag * b.imag; + return __pyx_t_float_complex_from_parts( + (a.real * b.real + a.imag * b.imag) / denom, + (a.imag * b.real - a.real * b.imag) / denom); + } + } + #endif + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex a) { + __pyx_t_float_complex z; + z.real = -a.real; + z.imag = -a.imag; + return z; + } + static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex a) { + return (a.real == 0) && (a.imag == 0); + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex a) { + __pyx_t_float_complex z; + z.real = a.real; + z.imag = -a.imag; + return z; + } + #if 1 + static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex z) { + #if !defined(HAVE_HYPOT) || defined(_MSC_VER) + return sqrtf(z.real*z.real + z.imag*z.imag); + #else + return hypotf(z.real, z.imag); + #endif + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + float r, lnr, theta, z_r, z_theta; + if (b.imag == 0 && b.real == (int)b.real) { + if (b.real < 0) { + float denom = a.real * a.real + a.imag * a.imag; + a.real = a.real / denom; + a.imag = -a.imag / denom; + b.real = -b.real; + } + switch ((int)b.real) { + case 0: + z.real = 1; + z.imag = 0; + return z; + case 1: + return a; + case 2: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(a, a); + case 3: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(z, a); + case 4: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(z, z); + } + } + if (a.imag == 0) { + if (a.real == 0) { + return a; + } else if (b.imag == 0) { + z.real = powf(a.real, b.real); + z.imag = 0; + return z; + } else if (a.real > 0) { + r = a.real; + theta = 0; + } else { + r = -a.real; + theta = atan2f(0, -1); + } + } else { + r = __Pyx_c_abs_float(a); + theta = atan2f(a.imag, a.real); + } + lnr = logf(r); + z_r = expf(lnr * b.real - theta * b.imag); + z_theta = theta * b.real + lnr * b.imag; + z.real = z_r * cosf(z_theta); + z.imag = z_r * sinf(z_theta); + return z; + } + #endif +#endif + +/* Declarations */ + #if CYTHON_CCOMPLEX + #ifdef __cplusplus + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + return ::std::complex< double >(x, y); + } + #else + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + return x + y*(__pyx_t_double_complex)_Complex_I; + } + #endif +#else + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + __pyx_t_double_complex z; + z.real = x; + z.imag = y; + return z; + } +#endif + +/* Arithmetic */ + #if CYTHON_CCOMPLEX +#else + static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + return (a.real == b.real) && (a.imag == b.imag); + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real + b.real; + z.imag = a.imag + b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real - b.real; + z.imag = a.imag - b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real * b.real - a.imag * b.imag; + z.imag = a.real * b.imag + a.imag * b.real; + return z; + } + #if 1 + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + if (b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real); + } else if (fabs(b.real) >= fabs(b.imag)) { + if (b.real == 0 && b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.imag); + } else { + double r = b.imag / b.real; + double s = 1.0 / (b.real + b.imag * r); + return __pyx_t_double_complex_from_parts( + (a.real + a.imag * r) * s, (a.imag - a.real * r) * s); + } + } else { + double r = b.real / b.imag; + double s = 1.0 / (b.imag + b.real * r); + return __pyx_t_double_complex_from_parts( + (a.real * r + a.imag) * s, (a.imag * r - a.real) * s); + } + } + #else + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + if (b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real); + } else { + double denom = b.real * b.real + b.imag * b.imag; + return __pyx_t_double_complex_from_parts( + (a.real * b.real + a.imag * b.imag) / denom, + (a.imag * b.real - a.real * b.imag) / denom); + } + } + #endif + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex a) { + __pyx_t_double_complex z; + z.real = -a.real; + z.imag = -a.imag; + return z; + } + static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex a) { + return (a.real == 0) && (a.imag == 0); + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex a) { + __pyx_t_double_complex z; + z.real = a.real; + z.imag = -a.imag; + return z; + } + #if 1 + static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex z) { + #if !defined(HAVE_HYPOT) || defined(_MSC_VER) + return sqrt(z.real*z.real + z.imag*z.imag); + #else + return hypot(z.real, z.imag); + #endif + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + double r, lnr, theta, z_r, z_theta; + if (b.imag == 0 && b.real == (int)b.real) { + if (b.real < 0) { + double denom = a.real * a.real + a.imag * a.imag; + a.real = a.real / denom; + a.imag = -a.imag / denom; + b.real = -b.real; + } + switch ((int)b.real) { + case 0: + z.real = 1; + z.imag = 0; + return z; + case 1: + return a; + case 2: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(a, a); + case 3: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(z, a); + case 4: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(z, z); + } + } + if (a.imag == 0) { + if (a.real == 0) { + return a; + } else if (b.imag == 0) { + z.real = pow(a.real, b.real); + z.imag = 0; + return z; + } else if (a.real > 0) { + r = a.real; + theta = 0; + } else { + r = -a.real; + theta = atan2(0, -1); + } + } else { + r = __Pyx_c_abs_double(a); + theta = atan2(a.imag, a.real); + } + lnr = log(r); + z_r = exp(lnr * b.real - theta * b.imag); + z_theta = theta * b.real + lnr * b.imag; + z.real = z_r * cos(z_theta); + z.imag = z_r * sin(z_theta); + return z; + } + #endif +#endif + +/* CIntFromPyVerify */ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) +#define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ + __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) +#define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\ + {\ + func_type value = func_value;\ + if (sizeof(target_type) < sizeof(func_type)) {\ + if (unlikely(value != (func_type) (target_type) value)) {\ + func_type zero = 0;\ + if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\ + return (target_type) -1;\ + if (is_unsigned && unlikely(value < zero))\ + goto raise_neg_overflow;\ + else\ + goto raise_overflow;\ + }\ + }\ + return (target_type) value;\ + } + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(enum NPY_TYPES) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(enum NPY_TYPES) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(enum NPY_TYPES) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(enum NPY_TYPES), + little, !is_unsigned); + } +} + +/* CIntFromPy */ + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + const int neg_one = (int) -1, const_zero = (int) 0; + const int is_unsigned = neg_one > const_zero; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_Check(x))) { + if (sizeof(int) < sizeof(long)) { + __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x)) + } else { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + goto raise_neg_overflow; + } + return (int) val; + } + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (int) 0; + case 1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0]) + case 2: + if (8 * sizeof(int) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) { + return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + case 3: + if (8 * sizeof(int) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) { + return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + case 4: + if (8 * sizeof(int) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) { + return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + } +#endif +#if CYTHON_COMPILING_IN_CPYTHON + if (unlikely(Py_SIZE(x) < 0)) { + goto raise_neg_overflow; + } +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (int) -1; + if (unlikely(result == 1)) + goto raise_neg_overflow; + } +#endif + if (sizeof(int) <= sizeof(unsigned long)) { + __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) +#endif + } + } else { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (int) 0; + case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0])) + case 1: __PYX_VERIFY_RETURN_INT(int, digit, +digits[0]) + case -2: + if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 2: + if (8 * sizeof(int) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case -3: + if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 3: + if (8 * sizeof(int) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case -4: + if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 4: + if (8 * sizeof(int) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { + return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + } +#endif + if (sizeof(int) <= sizeof(long)) { + __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x)) +#endif + } + } + { +#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) + PyErr_SetString(PyExc_RuntimeError, + "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); +#else + int val; + PyObject *v = __Pyx_PyNumber_IntOrLong(x); + #if PY_MAJOR_VERSION < 3 + if (likely(v) && !PyLong_Check(v)) { + PyObject *tmp = v; + v = PyNumber_Long(tmp); + Py_DECREF(tmp); + } + #endif + if (likely(v)) { + int one = 1; int is_little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&val; + int ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); + Py_DECREF(v); + if (likely(!ret)) + return val; + } +#endif + return (int) -1; + } + } else { + int val; + PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); + if (!tmp) return (int) -1; + val = __Pyx_PyInt_As_int(tmp); + Py_DECREF(tmp); + return val; + } +raise_overflow: + PyErr_SetString(PyExc_OverflowError, + "value too large to convert to int"); + return (int) -1; +raise_neg_overflow: + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to int"); + return (int) -1; +} + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + const long neg_one = (long) -1, const_zero = (long) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(long) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(long) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(long) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(long), + little, !is_unsigned); + } +} + +/* CIntFromPy */ + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + const long neg_one = (long) -1, const_zero = (long) 0; + const int is_unsigned = neg_one > const_zero; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_Check(x))) { + if (sizeof(long) < sizeof(long)) { + __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x)) + } else { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + goto raise_neg_overflow; + } + return (long) val; + } + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (long) 0; + case 1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0]) + case 2: + if (8 * sizeof(long) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) { + return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + case 3: + if (8 * sizeof(long) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) { + return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + case 4: + if (8 * sizeof(long) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) { + return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + } +#endif +#if CYTHON_COMPILING_IN_CPYTHON + if (unlikely(Py_SIZE(x) < 0)) { + goto raise_neg_overflow; + } +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (long) -1; + if (unlikely(result == 1)) + goto raise_neg_overflow; + } +#endif + if (sizeof(long) <= sizeof(unsigned long)) { + __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) +#endif + } + } else { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (long) 0; + case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0])) + case 1: __PYX_VERIFY_RETURN_INT(long, digit, +digits[0]) + case -2: + if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 2: + if (8 * sizeof(long) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case -3: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 3: + if (8 * sizeof(long) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case -4: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 4: + if (8 * sizeof(long) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + } +#endif + if (sizeof(long) <= sizeof(long)) { + __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x)) +#endif + } + } + { +#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) + PyErr_SetString(PyExc_RuntimeError, + "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); +#else + long val; + PyObject *v = __Pyx_PyNumber_IntOrLong(x); + #if PY_MAJOR_VERSION < 3 + if (likely(v) && !PyLong_Check(v)) { + PyObject *tmp = v; + v = PyNumber_Long(tmp); + Py_DECREF(tmp); + } + #endif + if (likely(v)) { + int one = 1; int is_little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&val; + int ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); + Py_DECREF(v); + if (likely(!ret)) + return val; + } +#endif + return (long) -1; + } + } else { + long val; + PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); + if (!tmp) return (long) -1; + val = __Pyx_PyInt_As_long(tmp); + Py_DECREF(tmp); + return val; + } +raise_overflow: + PyErr_SetString(PyExc_OverflowError, + "value too large to convert to long"); + return (long) -1; +raise_neg_overflow: + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to long"); + return (long) -1; +} + +/* CheckBinaryVersion */ + static int __Pyx_check_binary_version(void) { + char ctversion[4], rtversion[4]; + PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); + PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); + if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) { + char message[200]; + PyOS_snprintf(message, sizeof(message), + "compiletime version %s of module '%.100s' " + "does not match runtime version %s", + ctversion, __Pyx_MODULE_NAME, rtversion); + return PyErr_WarnEx(NULL, message, 1); + } + return 0; +} + +/* FunctionExport */ + static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig) { + PyObject *d = 0; + PyObject *cobj = 0; + union { + void (*fp)(void); + void *p; + } tmp; + d = PyObject_GetAttrString(__pyx_m, (char *)"__pyx_capi__"); + if (!d) { + PyErr_Clear(); + d = PyDict_New(); + if (!d) + goto bad; + Py_INCREF(d); + if (PyModule_AddObject(__pyx_m, (char *)"__pyx_capi__", d) < 0) + goto bad; + } + tmp.fp = f; +#if PY_VERSION_HEX >= 0x02070000 + cobj = PyCapsule_New(tmp.p, sig, 0); +#else + cobj = PyCObject_FromVoidPtrAndDesc(tmp.p, (void *)sig, 0); +#endif + if (!cobj) + goto bad; + if (PyDict_SetItemString(d, name, cobj) < 0) + goto bad; + Py_DECREF(cobj); + Py_DECREF(d); + return 0; +bad: + Py_XDECREF(cobj); + Py_XDECREF(d); + return -1; +} + +/* ModuleImport */ + #ifndef __PYX_HAVE_RT_ImportModule +#define __PYX_HAVE_RT_ImportModule +static PyObject *__Pyx_ImportModule(const char *name) { + PyObject *py_name = 0; + PyObject *py_module = 0; + py_name = __Pyx_PyIdentifier_FromString(name); + if (!py_name) + goto bad; + py_module = PyImport_Import(py_name); + Py_DECREF(py_name); + return py_module; +bad: + Py_XDECREF(py_name); + return 0; +} +#endif + +/* TypeImport */ + #ifndef __PYX_HAVE_RT_ImportType +#define __PYX_HAVE_RT_ImportType +static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, + size_t size, int strict) +{ + PyObject *py_module = 0; + PyObject *result = 0; + PyObject *py_name = 0; + char warning[200]; + Py_ssize_t basicsize; +#ifdef Py_LIMITED_API + PyObject *py_basicsize; +#endif + py_module = __Pyx_ImportModule(module_name); + if (!py_module) + goto bad; + py_name = __Pyx_PyIdentifier_FromString(class_name); + if (!py_name) + goto bad; + result = PyObject_GetAttr(py_module, py_name); + Py_DECREF(py_name); + py_name = 0; + Py_DECREF(py_module); + py_module = 0; + if (!result) + goto bad; + if (!PyType_Check(result)) { + PyErr_Format(PyExc_TypeError, + "%.200s.%.200s is not a type object", + module_name, class_name); + goto bad; + } +#ifndef Py_LIMITED_API + basicsize = ((PyTypeObject *)result)->tp_basicsize; +#else + py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); + if (!py_basicsize) + goto bad; + basicsize = PyLong_AsSsize_t(py_basicsize); + Py_DECREF(py_basicsize); + py_basicsize = 0; + if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) + goto bad; +#endif + if (!strict && (size_t)basicsize > size) { + PyOS_snprintf(warning, sizeof(warning), + "%s.%s size changed, may indicate binary incompatibility. Expected %zd, got %zd", + module_name, class_name, basicsize, size); + if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; + } + else if ((size_t)basicsize != size) { + PyErr_Format(PyExc_ValueError, + "%.200s.%.200s has the wrong size, try recompiling. Expected %zd, got %zd", + module_name, class_name, basicsize, size); + goto bad; + } + return (PyTypeObject *)result; +bad: + Py_XDECREF(py_module); + Py_XDECREF(result); + return NULL; +} +#endif + +/* InitStrings */ + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + while (t->p) { + #if PY_MAJOR_VERSION < 3 + if (t->is_unicode) { + *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); + } else if (t->intern) { + *t->p = PyString_InternFromString(t->s); + } else { + *t->p = PyString_FromStringAndSize(t->s, t->n - 1); + } + #else + if (t->is_unicode | t->is_str) { + if (t->intern) { + *t->p = PyUnicode_InternFromString(t->s); + } else if (t->encoding) { + *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); + } else { + *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); + } + } else { + *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); + } + #endif + if (!*t->p) + return -1; + if (PyObject_Hash(*t->p) == -1) + PyErr_Clear(); + ++t; + } + return 0; +} + +static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { + return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); +} +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { + Py_ssize_t ignore; + return __Pyx_PyObject_AsStringAndSize(o, &ignore); +} +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { +#if CYTHON_COMPILING_IN_CPYTHON && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) + if ( +#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + __Pyx_sys_getdefaultencoding_not_ascii && +#endif + PyUnicode_Check(o)) { +#if PY_VERSION_HEX < 0x03030000 + char* defenc_c; + PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); + if (!defenc) return NULL; + defenc_c = PyBytes_AS_STRING(defenc); +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + { + char* end = defenc_c + PyBytes_GET_SIZE(defenc); + char* c; + for (c = defenc_c; c < end; c++) { + if ((unsigned char) (*c) >= 128) { + PyUnicode_AsASCIIString(o); + return NULL; + } + } + } +#endif + *length = PyBytes_GET_SIZE(defenc); + return defenc_c; +#else + if (__Pyx_PyUnicode_READY(o) == -1) return NULL; +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + if (PyUnicode_IS_ASCII(o)) { + *length = PyUnicode_GET_LENGTH(o); + return PyUnicode_AsUTF8(o); + } else { + PyUnicode_AsASCIIString(o); + return NULL; + } +#else + return PyUnicode_AsUTF8AndSize(o, length); +#endif +#endif + } else +#endif +#if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE)) + if (PyByteArray_Check(o)) { + *length = PyByteArray_GET_SIZE(o); + return PyByteArray_AS_STRING(o); + } else +#endif + { + char* result; + int r = PyBytes_AsStringAndSize(o, &result, length); + if (unlikely(r < 0)) { + return NULL; + } else { + return result; + } + } +} +static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { + int is_true = x == Py_True; + if (is_true | (x == Py_False) | (x == Py_None)) return is_true; + else return PyObject_IsTrue(x); +} +static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) { +#if CYTHON_USE_TYPE_SLOTS + PyNumberMethods *m; +#endif + const char *name = NULL; + PyObject *res = NULL; +#if PY_MAJOR_VERSION < 3 + if (PyInt_Check(x) || PyLong_Check(x)) +#else + if (PyLong_Check(x)) +#endif + return __Pyx_NewRef(x); +#if CYTHON_USE_TYPE_SLOTS + m = Py_TYPE(x)->tp_as_number; + #if PY_MAJOR_VERSION < 3 + if (m && m->nb_int) { + name = "int"; + res = PyNumber_Int(x); + } + else if (m && m->nb_long) { + name = "long"; + res = PyNumber_Long(x); + } + #else + if (m && m->nb_int) { + name = "int"; + res = PyNumber_Long(x); + } + #endif +#else + res = PyNumber_Int(x); +#endif + if (res) { +#if PY_MAJOR_VERSION < 3 + if (!PyInt_Check(res) && !PyLong_Check(res)) { +#else + if (!PyLong_Check(res)) { +#endif + PyErr_Format(PyExc_TypeError, + "__%.4s__ returned non-%.4s (type %.200s)", + name, name, Py_TYPE(res)->tp_name); + Py_DECREF(res); + return NULL; + } + } + else if (!PyErr_Occurred()) { + PyErr_SetString(PyExc_TypeError, + "an integer is required"); + } + return res; +} +static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { + Py_ssize_t ival; + PyObject *x; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(b))) { + if (sizeof(Py_ssize_t) >= sizeof(long)) + return PyInt_AS_LONG(b); + else + return PyInt_AsSsize_t(x); + } +#endif + if (likely(PyLong_CheckExact(b))) { + #if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)b)->ob_digit; + const Py_ssize_t size = Py_SIZE(b); + if (likely(__Pyx_sst_abs(size) <= 1)) { + ival = likely(size) ? digits[0] : 0; + if (size == -1) ival = -ival; + return ival; + } else { + switch (size) { + case 2: + if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { + return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -2: + if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case 3: + if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { + return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -3: + if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case 4: + if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { + return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -4: + if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + } + } + #endif + return PyLong_AsSsize_t(b); + } + x = PyNumber_Index(b); + if (!x) return -1; + ival = PyInt_AsSsize_t(x); + Py_DECREF(x); + return ival; +} +static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { + return PyInt_FromSize_t(ival); +} + + +#endif /* Py_PYTHON_H */ diff --git a/ccd/procedures.c b/ccd/procedures.c new file mode 100644 index 0000000..4bcd7b3 --- /dev/null +++ b/ccd/procedures.c @@ -0,0 +1,19323 @@ +/* Generated by Cython 0.26 */ + +/* BEGIN: Cython Metadata +{ + "distutils": { + "depends": [ + "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h", + "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h" + ], + "include_dirs": [ + "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include" + ], + "name": "ccd.procedures", + "sources": [ + "ccd/procedures.pyx" + ] + }, + "module_name": "ccd.procedures" +} +END: Cython Metadata */ + +#define PY_SSIZE_T_CLEAN +#include "Python.h" +#ifndef Py_PYTHON_H + #error Python headers needed to compile C extensions, please install development version of Python. +#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) + #error Cython requires Python 2.6+ or Python 3.2+. +#else +#define CYTHON_ABI "0_26" +#include +#ifndef offsetof + #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) +#endif +#if !defined(WIN32) && !defined(MS_WINDOWS) + #ifndef __stdcall + #define __stdcall + #endif + #ifndef __cdecl + #define __cdecl + #endif + #ifndef __fastcall + #define __fastcall + #endif +#endif +#ifndef DL_IMPORT + #define DL_IMPORT(t) t +#endif +#ifndef DL_EXPORT + #define DL_EXPORT(t) t +#endif +#define __PYX_COMMA , +#ifndef HAVE_LONG_LONG + #if PY_VERSION_HEX >= 0x03030000 || (PY_MAJOR_VERSION == 2 && PY_VERSION_HEX >= 0x02070000) + #define HAVE_LONG_LONG + #endif +#endif +#ifndef PY_LONG_LONG + #define PY_LONG_LONG LONG_LONG +#endif +#ifndef Py_HUGE_VAL + #define Py_HUGE_VAL HUGE_VAL +#endif +#ifdef PYPY_VERSION + #define CYTHON_COMPILING_IN_PYPY 1 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #undef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 0 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #undef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #undef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 1 + #undef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 0 + #undef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 0 + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 +#elif defined(PYSTON_VERSION) + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 1 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 +#else + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 1 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #if PY_MAJOR_VERSION < 3 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #elif !defined(CYTHON_USE_ASYNC_SLOTS) + #define CYTHON_USE_ASYNC_SLOTS 1 + #endif + #if PY_VERSION_HEX < 0x02070000 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #elif !defined(CYTHON_USE_PYLONG_INTERNALS) + #define CYTHON_USE_PYLONG_INTERNALS 1 + #endif + #ifndef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 1 + #endif + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #if PY_VERSION_HEX < 0x030300F0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #elif !defined(CYTHON_USE_UNICODE_WRITER) + #define CYTHON_USE_UNICODE_WRITER 1 + #endif + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #ifndef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 1 + #endif + #ifndef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 1 + #endif +#endif +#if !defined(CYTHON_FAST_PYCCALL) +#define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1) +#endif +#if CYTHON_USE_PYLONG_INTERNALS + #include "longintrepr.h" + #undef SHIFT + #undef BASE + #undef MASK +#endif +#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag) + #define Py_OptimizeFlag 0 +#endif +#define __PYX_BUILD_PY_SSIZE_T "n" +#define CYTHON_FORMAT_SSIZE_T "z" +#if PY_MAJOR_VERSION < 3 + #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ + PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) + #define __Pyx_DefaultClassType PyClass_Type +#else + #define __Pyx_BUILTIN_MODULE_NAME "builtins" + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ + PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) + #define __Pyx_DefaultClassType PyType_Type +#endif +#ifndef Py_TPFLAGS_CHECKTYPES + #define Py_TPFLAGS_CHECKTYPES 0 +#endif +#ifndef Py_TPFLAGS_HAVE_INDEX + #define Py_TPFLAGS_HAVE_INDEX 0 +#endif +#ifndef Py_TPFLAGS_HAVE_NEWBUFFER + #define Py_TPFLAGS_HAVE_NEWBUFFER 0 +#endif +#ifndef Py_TPFLAGS_HAVE_FINALIZE + #define Py_TPFLAGS_HAVE_FINALIZE 0 +#endif +#if PY_VERSION_HEX < 0x030700A0 || !defined(METH_FASTCALL) + #ifndef METH_FASTCALL + #define METH_FASTCALL 0x80 + #endif + typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, Py_ssize_t nargs); + typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject **args, + Py_ssize_t nargs, PyObject *kwnames); +#else + #define __Pyx_PyCFunctionFast _PyCFunctionFast + #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords +#endif +#if CYTHON_FAST_PYCCALL +#define __Pyx_PyFastCFunction_Check(func)\ + ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))))) +#else +#define __Pyx_PyFastCFunction_Check(func) 0 +#endif +#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) + #define CYTHON_PEP393_ENABLED 1 + #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\ + 0 : _PyUnicode_Ready((PyObject *)(op))) + #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) + #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u) + #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u) + #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) + #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u))) +#else + #define CYTHON_PEP393_ENABLED 0 + #define PyUnicode_1BYTE_KIND 1 + #define PyUnicode_2BYTE_KIND 2 + #define PyUnicode_4BYTE_KIND 4 + #define __Pyx_PyUnicode_READY(op) (0) + #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) + #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111) + #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE)) + #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) + #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u)) +#endif +#if CYTHON_COMPILING_IN_PYPY + #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) + #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) +#else + #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) + #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ + PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains) + #define PyUnicode_Contains(u, s) PySequence_Contains(u, s) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check) + #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format) + #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc) + #define PyObject_Malloc(s) PyMem_Malloc(s) + #define PyObject_Free(p) PyMem_Free(p) + #define PyObject_Realloc(p) PyMem_Realloc(p) +#endif +#if CYTHON_COMPILING_IN_PYSTON + #define __Pyx_PyCode_HasFreeVars(co) PyCode_HasFreeVars(co) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno) +#else + #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno) +#endif +#define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) +#define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) +#else + #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) +#endif +#if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII) + #define PyObject_ASCII(o) PyObject_Repr(o) +#endif +#if PY_MAJOR_VERSION >= 3 + #define PyBaseString_Type PyUnicode_Type + #define PyStringObject PyUnicodeObject + #define PyString_Type PyUnicode_Type + #define PyString_Check PyUnicode_Check + #define PyString_CheckExact PyUnicode_CheckExact +#endif +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) + #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj) +#else + #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj)) + #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) +#endif +#ifndef PySet_CheckExact + #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) +#endif +#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) +#define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception) +#if PY_MAJOR_VERSION >= 3 + #define PyIntObject PyLongObject + #define PyInt_Type PyLong_Type + #define PyInt_Check(op) PyLong_Check(op) + #define PyInt_CheckExact(op) PyLong_CheckExact(op) + #define PyInt_FromString PyLong_FromString + #define PyInt_FromUnicode PyLong_FromUnicode + #define PyInt_FromLong PyLong_FromLong + #define PyInt_FromSize_t PyLong_FromSize_t + #define PyInt_FromSsize_t PyLong_FromSsize_t + #define PyInt_AsLong PyLong_AsLong + #define PyInt_AS_LONG PyLong_AS_LONG + #define PyInt_AsSsize_t PyLong_AsSsize_t + #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask + #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask + #define PyNumber_Int PyNumber_Long +#endif +#if PY_MAJOR_VERSION >= 3 + #define PyBoolObject PyLongObject +#endif +#if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY + #ifndef PyUnicode_InternFromString + #define PyUnicode_InternFromString(s) PyUnicode_FromString(s) + #endif +#endif +#if PY_VERSION_HEX < 0x030200A4 + typedef long Py_hash_t; + #define __Pyx_PyInt_FromHash_t PyInt_FromLong + #define __Pyx_PyInt_AsHash_t PyInt_AsLong +#else + #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t + #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t +#endif +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func)) +#else + #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) +#endif +#ifndef __has_attribute + #define __has_attribute(x) 0 +#endif +#ifndef __has_cpp_attribute + #define __has_cpp_attribute(x) 0 +#endif +#if CYTHON_USE_ASYNC_SLOTS + #if PY_VERSION_HEX >= 0x030500B1 + #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods + #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async) + #else + typedef struct { + unaryfunc am_await; + unaryfunc am_aiter; + unaryfunc am_anext; + } __Pyx_PyAsyncMethodsStruct; + #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved)) + #endif +#else + #define __Pyx_PyType_AsAsync(obj) NULL +#endif +#ifndef CYTHON_RESTRICT + #if defined(__GNUC__) + #define CYTHON_RESTRICT __restrict__ + #elif defined(_MSC_VER) && _MSC_VER >= 1400 + #define CYTHON_RESTRICT __restrict + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_RESTRICT restrict + #else + #define CYTHON_RESTRICT + #endif +#endif +#ifndef CYTHON_UNUSED +# if defined(__GNUC__) +# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +#endif +#ifndef CYTHON_MAYBE_UNUSED_VAR +# if defined(__cplusplus) + template void CYTHON_MAYBE_UNUSED_VAR( const T& ) { } +# else +# define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x) +# endif +#endif +#ifndef CYTHON_NCP_UNUSED +# if CYTHON_COMPILING_IN_CPYTHON +# define CYTHON_NCP_UNUSED +# else +# define CYTHON_NCP_UNUSED CYTHON_UNUSED +# endif +#endif +#define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) +#ifdef _MSC_VER + #ifndef _MSC_STDINT_H_ + #if _MSC_VER < 1300 + typedef unsigned char uint8_t; + typedef unsigned int uint32_t; + #else + typedef unsigned __int8 uint8_t; + typedef unsigned __int32 uint32_t; + #endif + #endif +#else + #include +#endif +#ifndef CYTHON_FALLTHROUGH + #ifdef __cplusplus + #if __has_cpp_attribute(fallthrough) + #define CYTHON_FALLTHROUGH [[fallthrough]] + #elif __has_cpp_attribute(clang::fallthrough) + #define CYTHON_FALLTHROUGH [[clang::fallthrough]] + #endif + #endif + #ifndef CYTHON_FALLTHROUGH + #if __has_attribute(fallthrough) || (defined(__GNUC__) && defined(__attribute__)) + #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) + #else + #define CYTHON_FALLTHROUGH + #endif + #endif +#endif + +#ifndef CYTHON_INLINE + #if defined(__clang__) + #define CYTHON_INLINE __inline__ __attribute__ ((__unused__)) + #elif defined(__GNUC__) + #define CYTHON_INLINE __inline__ + #elif defined(_MSC_VER) + #define CYTHON_INLINE __inline + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_INLINE inline + #else + #define CYTHON_INLINE + #endif +#endif + +#if defined(WIN32) || defined(MS_WINDOWS) + #define _USE_MATH_DEFINES +#endif +#include +#ifdef NAN +#define __PYX_NAN() ((float) NAN) +#else +static CYTHON_INLINE float __PYX_NAN() { + float value; + memset(&value, 0xFF, sizeof(value)); + return value; +} +#endif +#if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL) +#define __Pyx_truncl trunc +#else +#define __Pyx_truncl truncl +#endif + + +#define __PYX_ERR(f_index, lineno, Ln_error) \ +{ \ + __pyx_filename = __pyx_f[f_index]; __pyx_lineno = lineno; __pyx_clineno = __LINE__; goto Ln_error; \ +} + +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) +#else + #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) +#endif + +#ifndef __PYX_EXTERN_C + #ifdef __cplusplus + #define __PYX_EXTERN_C extern "C" + #else + #define __PYX_EXTERN_C extern + #endif +#endif + +#define __PYX_HAVE__ccd__procedures +#define __PYX_HAVE_API__ccd__procedures +#include +#include +#include +#include "numpy/arrayobject.h" +#include "numpy/ufuncobject.h" +#include "pythread.h" +#ifdef _OPENMP +#include +#endif /* _OPENMP */ + +#ifdef PYREX_WITHOUT_ASSERTIONS +#define CYTHON_WITHOUT_ASSERTIONS +#endif + +typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding; + const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; + +#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 +#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0 +#define __PYX_DEFAULT_STRING_ENCODING "" +#define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString +#define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize +#define __Pyx_uchar_cast(c) ((unsigned char)c) +#define __Pyx_long_cast(x) ((long)x) +#define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\ + (sizeof(type) < sizeof(Py_ssize_t)) ||\ + (sizeof(type) > sizeof(Py_ssize_t) &&\ + likely(v < (type)PY_SSIZE_T_MAX ||\ + v == (type)PY_SSIZE_T_MAX) &&\ + (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\ + v == (type)PY_SSIZE_T_MIN))) ||\ + (sizeof(type) == sizeof(Py_ssize_t) &&\ + (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\ + v == (type)PY_SSIZE_T_MAX))) ) +#if defined (__cplusplus) && __cplusplus >= 201103L + #include + #define __Pyx_sst_abs(value) std::abs(value) +#elif SIZEOF_INT >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) abs(value) +#elif SIZEOF_LONG >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) labs(value) +#elif defined (_MSC_VER) && defined (_M_X64) + #define __Pyx_sst_abs(value) _abs64(value) +#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define __Pyx_sst_abs(value) llabs(value) +#elif defined (__GNUC__) + #define __Pyx_sst_abs(value) __builtin_llabs(value) +#else + #define __Pyx_sst_abs(value) ((value<0) ? -value : value) +#endif +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); +#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) +#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) +#define __Pyx_PyBytes_FromString PyBytes_FromString +#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize +static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); +#if PY_MAJOR_VERSION < 3 + #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString + #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize +#else + #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString + #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize +#endif +#define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) +#define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) +#define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) +#define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s) +#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s) +#if PY_MAJOR_VERSION < 3 +static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) +{ + const Py_UNICODE *u_end = u; + while (*u_end++) ; + return (size_t)(u_end - u - 1); +} +#else +#define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen +#endif +#define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) +#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode +#define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode +#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj) +#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None) +#define __Pyx_PyBool_FromLong(b) ((b) ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False)) +static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); +static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x); +static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); +static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); +#if CYTHON_ASSUME_SAFE_MACROS +#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) +#else +#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) +#endif +#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) +#if PY_MAJOR_VERSION >= 3 +#define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x)) +#else +#define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x)) +#endif +#define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x)) +#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII +static int __Pyx_sys_getdefaultencoding_not_ascii; +static int __Pyx_init_sys_getdefaultencoding_params(void) { + PyObject* sys; + PyObject* default_encoding = NULL; + PyObject* ascii_chars_u = NULL; + PyObject* ascii_chars_b = NULL; + const char* default_encoding_c; + sys = PyImport_ImportModule("sys"); + if (!sys) goto bad; + default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL); + Py_DECREF(sys); + if (!default_encoding) goto bad; + default_encoding_c = PyBytes_AsString(default_encoding); + if (!default_encoding_c) goto bad; + if (strcmp(default_encoding_c, "ascii") == 0) { + __Pyx_sys_getdefaultencoding_not_ascii = 0; + } else { + char ascii_chars[128]; + int c; + for (c = 0; c < 128; c++) { + ascii_chars[c] = c; + } + __Pyx_sys_getdefaultencoding_not_ascii = 1; + ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); + if (!ascii_chars_u) goto bad; + ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); + if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { + PyErr_Format( + PyExc_ValueError, + "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", + default_encoding_c); + goto bad; + } + Py_DECREF(ascii_chars_u); + Py_DECREF(ascii_chars_b); + } + Py_DECREF(default_encoding); + return 0; +bad: + Py_XDECREF(default_encoding); + Py_XDECREF(ascii_chars_u); + Py_XDECREF(ascii_chars_b); + return -1; +} +#endif +#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 +#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) +#else +#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) +#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT +static char* __PYX_DEFAULT_STRING_ENCODING; +static int __Pyx_init_sys_getdefaultencoding_params(void) { + PyObject* sys; + PyObject* default_encoding = NULL; + char* default_encoding_c; + sys = PyImport_ImportModule("sys"); + if (!sys) goto bad; + default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); + Py_DECREF(sys); + if (!default_encoding) goto bad; + default_encoding_c = PyBytes_AsString(default_encoding); + if (!default_encoding_c) goto bad; + __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c)); + if (!__PYX_DEFAULT_STRING_ENCODING) goto bad; + strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); + Py_DECREF(default_encoding); + return 0; +bad: + Py_XDECREF(default_encoding); + return -1; +} +#endif +#endif + + +/* Test for GCC > 2.95 */ +#if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))) + #define likely(x) __builtin_expect(!!(x), 1) + #define unlikely(x) __builtin_expect(!!(x), 0) +#else /* !__GNUC__ or GCC < 2.95 */ + #define likely(x) (x) + #define unlikely(x) (x) +#endif /* __GNUC__ */ +static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } + +static PyObject *__pyx_m; +static PyObject *__pyx_d; +static PyObject *__pyx_b; +static PyObject *__pyx_cython_runtime; +static PyObject *__pyx_empty_tuple; +static PyObject *__pyx_empty_bytes; +static PyObject *__pyx_empty_unicode; +static int __pyx_lineno; +static int __pyx_clineno = 0; +static const char * __pyx_cfilenm= __FILE__; +static const char *__pyx_filename; + +/* Header.proto */ +#if !defined(CYTHON_CCOMPLEX) + #if defined(__cplusplus) + #define CYTHON_CCOMPLEX 1 + #elif defined(_Complex_I) + #define CYTHON_CCOMPLEX 1 + #else + #define CYTHON_CCOMPLEX 0 + #endif +#endif +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + #include + #else + #include + #endif +#endif +#if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__) + #undef _Complex_I + #define _Complex_I 1.0fj +#endif + + +static const char *__pyx_f[] = { + "ccd/procedures.pyx", + "__init__.pxd", + "type.pxd", + "bool.pxd", + "complex.pxd", +}; +/* BufferFormatStructs.proto */ +#define IS_UNSIGNED(type) (((type) -1) > 0) +struct __Pyx_StructField_; +#define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0) +typedef struct { + const char* name; + struct __Pyx_StructField_* fields; + size_t size; + size_t arraysize[8]; + int ndim; + char typegroup; + char is_unsigned; + int flags; +} __Pyx_TypeInfo; +typedef struct __Pyx_StructField_ { + __Pyx_TypeInfo* type; + const char* name; + size_t offset; +} __Pyx_StructField; +typedef struct { + __Pyx_StructField* field; + size_t parent_offset; +} __Pyx_BufFmt_StackElem; +typedef struct { + __Pyx_StructField root; + __Pyx_BufFmt_StackElem* head; + size_t fmt_offset; + size_t new_count, enc_count; + size_t struct_alignment; + int is_complex; + char enc_type; + char new_packmode; + char enc_packmode; + char is_valid_array; +} __Pyx_BufFmt_Context; + + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":725 + * # in Cython to enable them only on the right systems. + * + * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t + */ +typedef npy_int8 __pyx_t_5numpy_int8_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":726 + * + * ctypedef npy_int8 int8_t + * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< + * ctypedef npy_int32 int32_t + * ctypedef npy_int64 int64_t + */ +typedef npy_int16 __pyx_t_5numpy_int16_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":727 + * ctypedef npy_int8 int8_t + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< + * ctypedef npy_int64 int64_t + * #ctypedef npy_int96 int96_t + */ +typedef npy_int32 __pyx_t_5numpy_int32_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":728 + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t + * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< + * #ctypedef npy_int96 int96_t + * #ctypedef npy_int128 int128_t + */ +typedef npy_int64 __pyx_t_5numpy_int64_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":732 + * #ctypedef npy_int128 int128_t + * + * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< + * ctypedef npy_uint16 uint16_t + * ctypedef npy_uint32 uint32_t + */ +typedef npy_uint8 __pyx_t_5numpy_uint8_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":733 + * + * ctypedef npy_uint8 uint8_t + * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< + * ctypedef npy_uint32 uint32_t + * ctypedef npy_uint64 uint64_t + */ +typedef npy_uint16 __pyx_t_5numpy_uint16_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":734 + * ctypedef npy_uint8 uint8_t + * ctypedef npy_uint16 uint16_t + * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< + * ctypedef npy_uint64 uint64_t + * #ctypedef npy_uint96 uint96_t + */ +typedef npy_uint32 __pyx_t_5numpy_uint32_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":735 + * ctypedef npy_uint16 uint16_t + * ctypedef npy_uint32 uint32_t + * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< + * #ctypedef npy_uint96 uint96_t + * #ctypedef npy_uint128 uint128_t + */ +typedef npy_uint64 __pyx_t_5numpy_uint64_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":739 + * #ctypedef npy_uint128 uint128_t + * + * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< + * ctypedef npy_float64 float64_t + * #ctypedef npy_float80 float80_t + */ +typedef npy_float32 __pyx_t_5numpy_float32_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":740 + * + * ctypedef npy_float32 float32_t + * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< + * #ctypedef npy_float80 float80_t + * #ctypedef npy_float128 float128_t + */ +typedef npy_float64 __pyx_t_5numpy_float64_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":749 + * # The int types are mapped a bit surprising -- + * # numpy.int corresponds to 'l' and numpy.long to 'q' + * ctypedef npy_long int_t # <<<<<<<<<<<<<< + * ctypedef npy_longlong long_t + * ctypedef npy_longlong longlong_t + */ +typedef npy_long __pyx_t_5numpy_int_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":750 + * # numpy.int corresponds to 'l' and numpy.long to 'q' + * ctypedef npy_long int_t + * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< + * ctypedef npy_longlong longlong_t + * + */ +typedef npy_longlong __pyx_t_5numpy_long_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":751 + * ctypedef npy_long int_t + * ctypedef npy_longlong long_t + * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< + * + * ctypedef npy_ulong uint_t + */ +typedef npy_longlong __pyx_t_5numpy_longlong_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":753 + * ctypedef npy_longlong longlong_t + * + * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<< + * ctypedef npy_ulonglong ulong_t + * ctypedef npy_ulonglong ulonglong_t + */ +typedef npy_ulong __pyx_t_5numpy_uint_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":754 + * + * ctypedef npy_ulong uint_t + * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<< + * ctypedef npy_ulonglong ulonglong_t + * + */ +typedef npy_ulonglong __pyx_t_5numpy_ulong_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":755 + * ctypedef npy_ulong uint_t + * ctypedef npy_ulonglong ulong_t + * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<< + * + * ctypedef npy_intp intp_t + */ +typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":757 + * ctypedef npy_ulonglong ulonglong_t + * + * ctypedef npy_intp intp_t # <<<<<<<<<<<<<< + * ctypedef npy_uintp uintp_t + * + */ +typedef npy_intp __pyx_t_5numpy_intp_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":758 + * + * ctypedef npy_intp intp_t + * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<< + * + * ctypedef npy_double float_t + */ +typedef npy_uintp __pyx_t_5numpy_uintp_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":760 + * ctypedef npy_uintp uintp_t + * + * ctypedef npy_double float_t # <<<<<<<<<<<<<< + * ctypedef npy_double double_t + * ctypedef npy_longdouble longdouble_t + */ +typedef npy_double __pyx_t_5numpy_float_t; + +/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":761 + * + * ctypedef npy_double float_t + * ctypedef npy_double double_t # <<<<<<<<<<<<<< + * ctypedef npy_longdouble longdouble_t + * + */ +typedef npy_double __pyx_t_5numpy_double_t; 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+ +/* "ccd/models/tmask.pxd":10 + * ctypedef int ITYPE_t + * ctypedef bool BTYPE_t + * ctypedef np.long_t LTYPE_t # <<<<<<<<<<<<<< + * + * + */ +typedef __pyx_t_5numpy_long_t __pyx_t_3ccd_6models_5tmask_LTYPE_t; + +/* "ccd/procedures.pyx":43 + * from cpython cimport bool + * + * ctypedef np.float64_t STYPE_t # <<<<<<<<<<<<<< + * ctypedef float FTYPE_t + * ctypedef int ITYPE_t + */ +typedef __pyx_t_5numpy_float64_t __pyx_t_3ccd_10procedures_STYPE_t; + +/* "ccd/procedures.pyx":44 + * + * ctypedef np.float64_t STYPE_t + * ctypedef float FTYPE_t # <<<<<<<<<<<<<< + * ctypedef int ITYPE_t + * ctypedef bool BTYPE_t + */ +typedef float __pyx_t_3ccd_10procedures_FTYPE_t; + +/* "ccd/procedures.pyx":45 + * ctypedef np.float64_t STYPE_t + * ctypedef float FTYPE_t + * ctypedef int ITYPE_t # <<<<<<<<<<<<<< + * ctypedef bool BTYPE_t + * ctypedef np.long_t LTYPE_t + */ +typedef int __pyx_t_3ccd_10procedures_ITYPE_t; + +/* "ccd/procedures.pyx":47 + * ctypedef int ITYPE_t + * ctypedef bool BTYPE_t + * ctypedef np.long_t LTYPE_t # <<<<<<<<<<<<<< + * + * + */ +typedef __pyx_t_5numpy_long_t __pyx_t_3ccd_10procedures_LTYPE_t; 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r = NULL; __Pyx_DECREF(tmp);}} while(0) + +/* PyObjectGetAttrStr.proto */ +#if CYTHON_USE_TYPE_SLOTS +static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { + PyTypeObject* tp = Py_TYPE(obj); + if (likely(tp->tp_getattro)) + return tp->tp_getattro(obj, attr_name); +#if PY_MAJOR_VERSION < 3 + if (likely(tp->tp_getattr)) + return tp->tp_getattr(obj, PyString_AS_STRING(attr_name)); +#endif + return PyObject_GetAttr(obj, attr_name); +} +#else +#define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n) +#endif + +/* GetBuiltinName.proto */ +static PyObject *__Pyx_GetBuiltinName(PyObject *name); + +/* RaiseArgTupleInvalid.proto */ +static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, + Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); + +/* RaiseDoubleKeywords.proto */ +static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); + +/* ParseKeywords.proto */ +static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ + PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\ + const char* function_name); + +/* Profile.proto */ +#ifndef CYTHON_PROFILE +#if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_PYSTON + #define CYTHON_PROFILE 0 +#else + #define CYTHON_PROFILE 1 +#endif +#endif +#ifndef CYTHON_TRACE_NOGIL + #define CYTHON_TRACE_NOGIL 0 +#else + #if CYTHON_TRACE_NOGIL && !defined(CYTHON_TRACE) + #define CYTHON_TRACE 1 + #endif +#endif +#ifndef CYTHON_TRACE + #define CYTHON_TRACE 0 +#endif +#if CYTHON_TRACE + #undef CYTHON_PROFILE_REUSE_FRAME +#endif +#ifndef CYTHON_PROFILE_REUSE_FRAME + #define CYTHON_PROFILE_REUSE_FRAME 0 +#endif +#if CYTHON_PROFILE || CYTHON_TRACE + #include "compile.h" + #include "frameobject.h" + #include "traceback.h" + #if CYTHON_PROFILE_REUSE_FRAME + #define CYTHON_FRAME_MODIFIER static + #define CYTHON_FRAME_DEL(frame) + #else + #define CYTHON_FRAME_MODIFIER + #define CYTHON_FRAME_DEL(frame) Py_CLEAR(frame) + #endif + #define __Pyx_TraceDeclarations\ + static PyCodeObject *__pyx_frame_code = NULL;\ + CYTHON_FRAME_MODIFIER PyFrameObject *__pyx_frame = NULL;\ + int __Pyx_use_tracing = 0; + #define __Pyx_TraceFrameInit(codeobj)\ + if (codeobj) __pyx_frame_code = (PyCodeObject*) codeobj; + #ifdef WITH_THREAD + #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ + if (nogil) {\ + if (CYTHON_TRACE_NOGIL) {\ + PyThreadState *tstate;\ + PyGILState_STATE state = PyGILState_Ensure();\ + tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing) && !tstate->tracing &&\ + (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ + __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, funcname, srcfile, firstlineno);\ + }\ + PyGILState_Release(state);\ + if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ + }\ + } else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing) && !tstate->tracing &&\ + (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ + __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, funcname, srcfile, firstlineno);\ + if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ + }\ + } + #else + #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ + { PyThreadState* tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing) && !tstate->tracing &&\ + (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ + __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, funcname, srcfile, firstlineno);\ + if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ + }\ + } + #endif + #define __Pyx_TraceException()\ + if (likely(!__Pyx_use_tracing)); else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (tstate->use_tracing &&\ + (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ + tstate->tracing++;\ + tstate->use_tracing = 0;\ + PyObject *exc_info = __Pyx_GetExceptionTuple(tstate);\ + if (exc_info) {\ + if (CYTHON_TRACE && tstate->c_tracefunc)\ + tstate->c_tracefunc(\ + tstate->c_traceobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ + tstate->c_profilefunc(\ + tstate->c_profileobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ + Py_DECREF(exc_info);\ + }\ + tstate->use_tracing = 1;\ + tstate->tracing--;\ + }\ + } + static void __Pyx_call_return_trace_func(PyThreadState *tstate, PyFrameObject *frame, PyObject *result) { + PyObject *type, *value, *traceback; + PyErr_Fetch(&type, &value, &traceback); + tstate->tracing++; + tstate->use_tracing = 0; + if (CYTHON_TRACE && tstate->c_tracefunc) + tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_RETURN, result); + if (tstate->c_profilefunc) + tstate->c_profilefunc(tstate->c_profileobj, frame, PyTrace_RETURN, result); + CYTHON_FRAME_DEL(frame); + tstate->use_tracing = 1; + tstate->tracing--; + PyErr_Restore(type, value, traceback); + } + #ifdef WITH_THREAD + #define __Pyx_TraceReturn(result, nogil)\ + if (likely(!__Pyx_use_tracing)); else {\ + if (nogil) {\ + if (CYTHON_TRACE_NOGIL) {\ + PyThreadState *tstate;\ + PyGILState_STATE state = PyGILState_Ensure();\ + tstate = PyThreadState_GET();\ + if (tstate->use_tracing) {\ + __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ + }\ + PyGILState_Release(state);\ + }\ + } else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (tstate->use_tracing) {\ + __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ + }\ + }\ + } + #else + #define __Pyx_TraceReturn(result, nogil)\ + if (likely(!__Pyx_use_tracing)); else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (tstate->use_tracing) {\ + __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ + }\ + } + #endif + static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno); + static int __Pyx_TraceSetupAndCall(PyCodeObject** code, PyFrameObject** frame, const char *funcname, const char *srcfile, int firstlineno); +#else + #define __Pyx_TraceDeclarations + #define __Pyx_TraceFrameInit(codeobj) + #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if ((1)); else goto_error; + #define __Pyx_TraceException() + #define __Pyx_TraceReturn(result, nogil) +#endif +#if CYTHON_TRACE + static int __Pyx_call_line_trace_func(PyThreadState *tstate, PyFrameObject *frame, int lineno) { + int ret; + PyObject *type, *value, *traceback; + PyErr_Fetch(&type, &value, &traceback); + __Pyx_PyFrame_SetLineNumber(frame, lineno); + tstate->tracing++; + tstate->use_tracing = 0; + ret = tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_LINE, NULL); + tstate->use_tracing = 1; + tstate->tracing--; + if (likely(!ret)) { + PyErr_Restore(type, value, traceback); + } else { + Py_XDECREF(type); + Py_XDECREF(value); + Py_XDECREF(traceback); + } + return ret; + } + #ifdef WITH_THREAD + #define __Pyx_TraceLine(lineno, nogil, goto_error)\ + if (likely(!__Pyx_use_tracing)); else {\ + if (nogil) {\ + if (CYTHON_TRACE_NOGIL) {\ + int ret = 0;\ + PyThreadState *tstate;\ + PyGILState_STATE state = PyGILState_Ensure();\ + tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing && tstate->c_tracefunc)) {\ + ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ + }\ + PyGILState_Release(state);\ + if (unlikely(ret)) goto_error;\ + }\ + } else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing && tstate->c_tracefunc)) {\ + int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ + if (unlikely(ret)) goto_error;\ + }\ + }\ + } + #else + #define __Pyx_TraceLine(lineno, nogil, goto_error)\ + if (likely(!__Pyx_use_tracing)); else {\ + PyThreadState* tstate = PyThreadState_GET();\ + if (unlikely(tstate->use_tracing && tstate->c_tracefunc)) {\ + int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ + if (unlikely(ret)) goto_error;\ + }\ + } + #endif +#else + #define __Pyx_TraceLine(lineno, nogil, goto_error) if ((1)); else goto_error; +#endif + +/* GetModuleGlobalName.proto */ +static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name); + +/* PyFunctionFastCall.proto */ +#if CYTHON_FAST_PYCALL +#define __Pyx_PyFunction_FastCall(func, args, nargs)\ + __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL) +#if 1 || PY_VERSION_HEX < 0x030600B1 +static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs); +#else +#define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs) +#endif +#endif + +/* PyCFunctionFastCall.proto */ +#if CYTHON_FAST_PYCCALL +static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs); +#else +#define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL) +#endif + +/* PyObjectCall.proto */ +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw); +#else +#define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) +#endif + +/* PyObjectCallMethO.proto */ +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); +#endif + +/* PyObjectCallOneArg.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); + +/* ListCompAppend.proto */ +#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS +static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) { + PyListObject* L = (PyListObject*) list; + Py_ssize_t len = Py_SIZE(list); + if (likely(L->allocated > len)) { + Py_INCREF(x); + PyList_SET_ITEM(list, len, x); + Py_SIZE(list) = len+1; + return 0; + } + return PyList_Append(list, x); +} +#else +#define __Pyx_ListComp_Append(L,x) PyList_Append(L,x) +#endif + +/* GetItemInt.proto */ +#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\ + (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\ + __Pyx_GetItemInt_Generic(o, to_py_func(i)))) +#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ + (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, + int wraparound, int boundscheck); +#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ + (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, + int wraparound, int boundscheck); +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, + int is_list, int wraparound, int boundscheck); + +/* BufferFormatCheck.proto */ +static CYTHON_INLINE int __Pyx_GetBufferAndValidate(Py_buffer* buf, PyObject* obj, + __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack); +static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info); +static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts); +static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, + __Pyx_BufFmt_StackElem* stack, + __Pyx_TypeInfo* type); + +/* DictGetItem.proto */ +#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY +static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { + PyObject *value; + value = PyDict_GetItemWithError(d, key); + if (unlikely(!value)) { + if (!PyErr_Occurred()) { + PyObject* args = PyTuple_Pack(1, key); + if (likely(args)) + PyErr_SetObject(PyExc_KeyError, args); + Py_XDECREF(args); + } + return NULL; + } + Py_INCREF(value); + return value; +} +#else + #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) +#endif + +/* Import.proto */ +static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); + +/* ImportFrom.proto */ +static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); + +/* ExtTypeTest.proto */ +static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); + +/* RaiseTooManyValuesToUnpack.proto */ +static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); + +/* RaiseNeedMoreValuesToUnpack.proto */ +static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); + +/* RaiseNoneIterError.proto */ +static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); + +/* ListAppend.proto */ +#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS +static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) { + PyListObject* L = (PyListObject*) list; + Py_ssize_t len = Py_SIZE(list); + if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) { + Py_INCREF(x); + PyList_SET_ITEM(list, len, x); + Py_SIZE(list) = len+1; + return 0; + } + return PyList_Append(list, x); +} +#else +#define __Pyx_PyList_Append(L,x) PyList_Append(L,x) +#endif + +/* PyThreadStateGet.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate; +#define __Pyx_PyThreadState_assign __pyx_tstate = PyThreadState_GET(); +#else +#define __Pyx_PyThreadState_declare +#define __Pyx_PyThreadState_assign +#endif + +/* PyErrFetchRestore.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else +#define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) +#endif + +/* ArgTypeTest.proto */ +static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, + const char *name, int exact); + +/* PyIntBinop.proto */ +#if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, long intval, int inplace); +#else +#define __Pyx_PyInt_AddObjC(op1, op2, intval, inplace)\ + (inplace ? PyNumber_InPlaceAdd(op1, op2) : PyNumber_Add(op1, op2)) +#endif + +/* PyIntBinop.proto */ +#if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace); +#else +#define __Pyx_PyInt_SubtractObjC(op1, op2, intval, inplace)\ + (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2)) +#endif + +/* None.proto */ +static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname); + +/* SaveResetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +#else +#define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb) +#define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb) +#endif + +/* GetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb) +static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else +static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); +#endif + +/* RaiseException.proto */ +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); + +/* WriteUnraisableException.proto */ +static void __Pyx_WriteUnraisable(const char *name, int clineno, + int lineno, const char *filename, + int full_traceback, int nogil); + +/* PyErrExceptionMatches.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err) +static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err); +#else +#define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err) +#endif + +/* CLineInTraceback.proto */ +static int __Pyx_CLineForTraceback(int c_line); + +/* CodeObjectCache.proto */ +typedef struct { + PyCodeObject* code_object; + int code_line; +} __Pyx_CodeObjectCacheEntry; +struct __Pyx_CodeObjectCache { + int count; + int max_count; + __Pyx_CodeObjectCacheEntry* entries; +}; +static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL}; +static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); +static PyCodeObject *__pyx_find_code_object(int code_line); +static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); + +/* AddTraceback.proto */ +static void __Pyx_AddTraceback(const char *funcname, int c_line, + int py_line, const char *filename); + +/* BufferStructDeclare.proto */ +typedef struct { + Py_ssize_t shape, strides, suboffsets; +} __Pyx_Buf_DimInfo; +typedef struct { + size_t refcount; + Py_buffer pybuffer; +} __Pyx_Buffer; +typedef struct { + __Pyx_Buffer *rcbuffer; + char *data; + __Pyx_Buf_DimInfo diminfo[8]; +} __Pyx_LocalBuf_ND; + +#if PY_MAJOR_VERSION < 3 + static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags); + static void __Pyx_ReleaseBuffer(Py_buffer *view); +#else + #define __Pyx_GetBuffer PyObject_GetBuffer + #define __Pyx_ReleaseBuffer PyBuffer_Release +#endif + + +/* None.proto */ +static Py_ssize_t __Pyx_zeros[] = {0, 0, 0, 0, 0, 0, 0, 0}; +static Py_ssize_t __Pyx_minusones[] = {-1, -1, -1, -1, -1, -1, -1, -1}; + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value); + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); + +/* RealImag.proto */ +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + #define __Pyx_CREAL(z) ((z).real()) + #define __Pyx_CIMAG(z) ((z).imag()) + #else + #define __Pyx_CREAL(z) (__real__(z)) + #define __Pyx_CIMAG(z) (__imag__(z)) + #endif +#else + #define __Pyx_CREAL(z) ((z).real) + #define __Pyx_CIMAG(z) ((z).imag) +#endif +#if defined(__cplusplus) && CYTHON_CCOMPLEX\ + && (defined(_WIN32) || defined(__clang__) || (defined(__GNUC__) && (__GNUC__ >= 5 || __GNUC__ == 4 && __GNUC_MINOR__ >= 4 )) || __cplusplus >= 201103) + #define __Pyx_SET_CREAL(z,x) ((z).real(x)) + #define __Pyx_SET_CIMAG(z,y) ((z).imag(y)) +#else + #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x) + #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y) +#endif + +/* Arithmetic.proto */ +#if CYTHON_CCOMPLEX + #define __Pyx_c_eq_float(a, b) ((a)==(b)) + #define __Pyx_c_sum_float(a, b) ((a)+(b)) + #define __Pyx_c_diff_float(a, b) ((a)-(b)) + #define __Pyx_c_prod_float(a, b) ((a)*(b)) + #define __Pyx_c_quot_float(a, b) ((a)/(b)) + #define __Pyx_c_neg_float(a) (-(a)) + #ifdef __cplusplus + #define __Pyx_c_is_zero_float(z) ((z)==(float)0) + #define __Pyx_c_conj_float(z) (::std::conj(z)) + #if 1 + #define __Pyx_c_abs_float(z) (::std::abs(z)) + #define __Pyx_c_pow_float(a, b) (::std::pow(a, b)) + #endif + #else + #define __Pyx_c_is_zero_float(z) ((z)==0) + #define __Pyx_c_conj_float(z) (conjf(z)) + #if 1 + #define __Pyx_c_abs_float(z) (cabsf(z)) + #define __Pyx_c_pow_float(a, b) (cpowf(a, b)) + #endif + #endif +#else + static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex); + static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex); + #if 1 + static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex, __pyx_t_float_complex); + #endif +#endif + +/* Arithmetic.proto */ +#if CYTHON_CCOMPLEX + #define __Pyx_c_eq_double(a, b) ((a)==(b)) + #define __Pyx_c_sum_double(a, b) ((a)+(b)) + #define __Pyx_c_diff_double(a, b) ((a)-(b)) + #define __Pyx_c_prod_double(a, b) ((a)*(b)) + #define __Pyx_c_quot_double(a, b) ((a)/(b)) + #define __Pyx_c_neg_double(a) (-(a)) + #ifdef __cplusplus + #define __Pyx_c_is_zero_double(z) ((z)==(double)0) + #define __Pyx_c_conj_double(z) (::std::conj(z)) + #if 1 + #define __Pyx_c_abs_double(z) (::std::abs(z)) + #define __Pyx_c_pow_double(a, b) (::std::pow(a, b)) + #endif + #else + #define __Pyx_c_is_zero_double(z) ((z)==0) + #define __Pyx_c_conj_double(z) (conj(z)) + #if 1 + #define __Pyx_c_abs_double(z) (cabs(z)) + #define __Pyx_c_pow_double(a, b) (cpow(a, b)) + #endif + #endif +#else + static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex); + static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex); + #if 1 + static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex, __pyx_t_double_complex); + #endif +#endif + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value); + +/* CIntFromPy.proto */ +static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); + +/* CIntFromPy.proto */ +static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); + +/* CheckBinaryVersion.proto */ +static int __Pyx_check_binary_version(void); + +/* PyIdentifierFromString.proto */ +#if !defined(__Pyx_PyIdentifier_FromString) +#if PY_MAJOR_VERSION < 3 + #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s) +#else + #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s) +#endif +#endif + +/* ModuleImport.proto */ +static PyObject *__Pyx_ImportModule(const char *name); + +/* TypeImport.proto */ +static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict); + +/* FunctionImport.proto */ +static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (**f)(void), const char *sig); + +/* InitStrings.proto */ +static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); + + +/* Module declarations from 'cpython.buffer' */ + +/* Module declarations from 'libc.string' */ + +/* Module declarations from 'libc.stdio' */ + +/* Module declarations from '__builtin__' */ + +/* Module declarations from 'cpython.type' */ +static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0; + +/* Module declarations from 'cpython.version' */ + +/* Module declarations from 'cpython.exc' */ + +/* Module declarations from 'cpython.module' */ + +/* Module declarations from 'cpython.mem' */ + +/* Module declarations from 'cpython.tuple' */ + +/* Module declarations from 'cpython.list' */ + +/* Module declarations from 'cpython.sequence' */ + +/* Module declarations from 'cpython.mapping' */ + +/* Module declarations from 'cpython.iterator' */ + +/* Module declarations from 'cpython.number' */ + +/* Module declarations from 'cpython.int' */ + +/* Module declarations from '__builtin__' */ + +/* Module declarations from 'cpython.bool' */ +static PyTypeObject *__pyx_ptype_7cpython_4bool_bool = 0; + +/* Module declarations from 'cpython.long' */ + +/* Module declarations from 'cpython.float' */ + +/* Module declarations from '__builtin__' */ + +/* Module declarations from 'cpython.complex' */ +static PyTypeObject *__pyx_ptype_7cpython_7complex_complex = 0; + +/* Module declarations from 'cpython.string' */ + +/* Module declarations from 'cpython.unicode' */ + +/* Module declarations from 'cpython.dict' */ + +/* Module declarations from 'cpython.instance' */ + +/* Module declarations from 'cpython.function' */ + +/* Module declarations from 'cpython.method' */ + +/* Module declarations from 'cpython.weakref' */ + +/* Module declarations from 'cpython.getargs' */ + +/* Module declarations from 'cpython.pythread' */ + +/* Module declarations from 'cpython.pystate' */ + +/* Module declarations from 'cpython.cobject' */ + +/* Module declarations from 'cpython.oldbuffer' */ + +/* Module declarations from 'cpython.set' */ + +/* Module declarations from 'cpython.bytes' */ + +/* Module declarations from 'cpython.pycapsule' */ + +/* Module declarations from 'cpython' */ + +/* Module declarations from 'cpython.object' */ + +/* Module declarations from 'cpython.ref' */ + +/* Module declarations from 'libc.stdlib' */ + +/* Module declarations from 'numpy' */ + +/* Module declarations from 'numpy' */ +static PyTypeObject *__pyx_ptype_5numpy_dtype = 0; +static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0; +static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0; +static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0; +static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0; +static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/ + +/* Module declarations from 'ccd.models.tmask' */ +static PyArrayObject *(*__pyx_f_3ccd_6models_5tmask_tmask)(PyArrayObject *, PyArrayObject *, PyArrayObject *, PyObject *, __pyx_t_3ccd_6models_5tmask_FTYPE_t, __pyx_t_3ccd_6models_5tmask_FTYPE_t); /*proto*/ + +/* Module declarations from 'ccd.procedures' */ +static PyObject *__pyx_f_3ccd_10procedures_standard_procedure(PyArrayObject *, PyArrayObject *, PyObject *, PyArrayObject *, PyObject *, int __pyx_skip_dispatch); /*proto*/ +static PyObject *__pyx_f_3ccd_10procedures_initialize(PyArrayObject *, PyArrayObject *, PyObject *, PyObject *, PyArrayObject *, PyArrayObject *, PyObject *, PyObject *); /*proto*/ +static PyObject *__pyx_f_3ccd_10procedures_lookforward(PyArrayObject *, PyArrayObject *, PyObject *, PyObject *, PyArrayObject *, PyArrayObject *, PyObject *, PyObject *); /*proto*/ +static PyObject *__pyx_f_3ccd_10procedures_lookback(PyArrayObject *, PyArrayObject *, PyObject *, PyObject *, __pyx_t_3ccd_10procedures_ITYPE_t, PyArrayObject *, PyArrayObject *, PyObject *); /*proto*/ +static PyObject *__pyx_f_3ccd_10procedures_catch(PyArrayObject *, PyArrayObject *, PyObject *, PyArrayObject *, PyObject *, __pyx_t_3ccd_10procedures_ITYPE_t, PyObject *, PyObject *); /*proto*/ +static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_LTYPE_t = { "LTYPE_t", NULL, sizeof(__pyx_t_3ccd_10procedures_LTYPE_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_3ccd_10procedures_LTYPE_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_3ccd_10procedures_LTYPE_t), 0 }; +static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_STYPE_t = { "STYPE_t", NULL, sizeof(__pyx_t_3ccd_10procedures_STYPE_t), { 0 }, 0, 'R', 0, 0 }; +#define __Pyx_MODULE_NAME "ccd.procedures" +int __pyx_module_is_main_ccd__procedures = 0; + +/* Implementation of 'ccd.procedures' */ +static PyObject *__pyx_builtin_any; +static PyObject *__pyx_builtin_range; +static PyObject *__pyx_builtin_ValueError; +static PyObject *__pyx_builtin_RuntimeError; +static PyObject *__pyx_builtin_ImportError; +static const char __pyx_k_np[] = "np"; +static const char __pyx_k_qa[] = "qa"; +static const char __pyx_k_END[] = "END"; +static const char __pyx_k_any[] = "any"; +static const char __pyx_k_ccd[] = "ccd"; +static const char __pyx_k_log[] = "log"; +static const char __pyx_k_sum[] = "sum"; +static const char __pyx_k_axis[] = "axis"; +static const char __pyx_k_fill[] = "fill"; +static const char __pyx_k_func[] = "func"; +static const char __pyx_k_main[] = "__main__"; +static const char __pyx_k_name[] = "__name__"; +static const char __pyx_k_rmse[] = "rmse"; +static const char __pyx_k_snow[] = "snow"; +static const char __pyx_k_stop[] = "stop"; +static const char __pyx_k_test[] = "__test__"; +static const char __pyx_k_Lasso[] = "Lasso"; +static const char __pyx_k_START[] = "START"; +static const char __pyx_k_array[] = "array"; +static const char __pyx_k_clear[] = "clear"; +static const char __pyx_k_dates[] = "dates"; +static const char __pyx_k_debug[] = "debug"; +static const char __pyx_k_numpy[] = "numpy"; +static const char __pyx_k_range[] = "range"; +static const char __pyx_k_shape[] = "shape"; +static const char __pyx_k_start[] = "start"; +static const char __pyx_k_water[] = "water"; +static const char __pyx_k_zeros[] = "zeros"; +static const char __pyx_k_format[] = "format"; +static const char __pyx_k_import[] = "__import__"; +static const char __pyx_k_ldebug[] = "ldebug"; +static const char __pyx_k_median[] = "median"; +static const char __pyx_k_models[] = "models"; +static const char __pyx_k_np_sum[] = "np_sum"; +static const char __pyx_k_period[] = "period"; +static const char __pyx_k_result[] = "result"; +static const char __pyx_k_stable[] = "stable"; +static const char __pyx_k_QA_FILL[] = "QA_FILL"; +static const char __pyx_k_QA_SNOW[] = "QA_SNOW"; +static const char __pyx_k_T_CONST[] = "T_CONST"; +static const char __pyx_k_end_day[] = "end_day"; +static const char __pyx_k_logging[] = "logging"; +static const char __pyx_k_quality[] = "quality"; +static const char __pyx_k_CURVE_QA[] = "CURVE_QA"; +static const char __pyx_k_QA_CLEAR[] = "QA_CLEAR"; +static const char __pyx_k_QA_WATER[] = "QA_WATER"; +static const char __pyx_k_curve_qa[] = "curve_qa"; +static const char __pyx_k_max_iter[] = "max_iter"; +static const char __pyx_k_np_array[] = "np_array"; +static const char __pyx_k_np_zeros[] = "np_zeros"; +static const char __pyx_k_num_coef[] = "num_coef"; +static const char __pyx_k_residual[] = "residual"; +static const char __pyx_k_spectrum[] = "spectrum"; +static const char __pyx_k_DAY_DELTA[] = "DAY_DELTA"; +static const char __pyx_k_Initial_s[] = "Initial %s"; +static const char __pyx_k_MEOW_SIZE[] = "MEOW_SIZE"; +static const char __pyx_k_PEEK_SIZE[] = "PEEK_SIZE"; +static const char __pyx_k_break_day[] = "break_day"; +static const char __pyx_k_fitter_fn[] = "fitter_fn"; +static const char __pyx_k_getLogger[] = "getLogger"; +static const char __pyx_k_meow_size[] = "meow_size"; +static const char __pyx_k_start_day[] = "start_day"; +static const char __pyx_k_ValueError[] = "ValueError"; +static const char __pyx_k_ccd_change[] = "ccd.change"; +static const char __pyx_k_ccd_models[] = "ccd.models"; +static const char __pyx_k_magnitudes[] = "magnitudes"; +static const char __pyx_k_AVG_DAYS_YR[] = "AVG_DAYS_YR"; +static const char __pyx_k_INSUF_CLEAR[] = "INSUF_CLEAR"; +static const char __pyx_k_ImportError[] = "ImportError"; +static const char __pyx_k_THERMAL_IDX[] = "THERMAL_IDX"; +static const char __pyx_k_TMASK_BANDS[] = "TMASK_BANDS"; +static const char __pyx_k_avg_days_yr[] = "avg_days_yr"; +static const char __pyx_k_enough_snow[] = "enough_snow"; +static const char __pyx_k_enough_time[] = "enough_time"; +static const char __pyx_k_proc_params[] = "proc_params"; +static const char __pyx_k_snow_thresh[] = "snow_thresh"; +static const char __pyx_k_PERSIST_SNOW[] = "PERSIST_SNOW"; +static const char __pyx_k_RuntimeError[] = "RuntimeError"; +static const char __pyx_k_clear_thresh[] = "clear_thresh"; +static const char __pyx_k_enough_clear[] = "enough_clear"; +static const char __pyx_k_fit_max_iter[] = "fit_max_iter"; +static const char __pyx_k_observations[] = "observations"; +static const char __pyx_k_spectral_obs[] = "spectral_obs"; +static const char __pyx_k_detect_change[] = "detect_change"; +static const char __pyx_k_fit_procedure[] = "fit_procedure"; +static const char __pyx_k_fitted_models[] = "fitted_models"; +static const char __pyx_k_LASSO_MAX_ITER[] = "LASSO_MAX_ITER"; +static const char __pyx_k_NUM_OBS_FACTOR[] = "NUM_OBS_FACTOR"; +static const char __pyx_k_calc_residuals[] = "calc_residuals"; +static const char __pyx_k_ccd_math_utils[] = "ccd.math_utils"; +static const char __pyx_k_ccd_procedures[] = "ccd.procedures"; +static const char __pyx_k_detect_outlier[] = "detect_outlier"; +static const char __pyx_k_enough_samples[] = "enough_samples"; +static const char __pyx_k_euclidean_norm[] = "euclidean_norm"; +static const char __pyx_k_qa_enough_snow[] = "qa_enough_snow"; +static const char __pyx_k_COEFFICIENT_MAX[] = "COEFFICIENT_MAX"; +static const char __pyx_k_COEFFICIENT_MID[] = "COEFFICIENT_MID"; +static const char __pyx_k_COEFFICIENT_MIN[] = "COEFFICIENT_MIN"; +static const char __pyx_k_DETECTION_BANDS[] = "DETECTION_BANDS"; +static const char __pyx_k_processing_mask[] = "processing_mask"; +static const char __pyx_k_qa_enough_clear[] = "qa_enough_clear"; +static const char __pyx_k_CHANGE_THRESHOLD[] = "CHANGE_THRESHOLD"; +static const char __pyx_k_change_magnitude[] = "change_magnitude"; +static const char __pyx_k_find_closest_doy[] = "find_closest_doy"; +static const char __pyx_k_Checking_window_s[] = "Checking window: %s"; +static const char __pyx_k_Including_index_s[] = "Including index: %s"; +static const char __pyx_k_OUTLIER_THRESHOLD[] = "OUTLIER_THRESHOLD"; +static const char __pyx_k_kelvin_to_celsius[] = "kelvin_to_celsius"; +static const char __pyx_k_observation_count[] = "observation_count"; +static const char __pyx_k_SNOW_PCT_THRESHOLD[] = "SNOW_PCT_THRESHOLD"; +static const char __pyx_k_Variogram_values_s[] = "Variogram values: %s"; +static const char __pyx_k_adjusted_variogram[] = "adjusted_variogram"; +static const char __pyx_k_ccd_procedures_pyx[] = "ccd/procedures.pyx"; +static const char __pyx_k_change_probability[] = "change_probability"; +static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; +static const char __pyx_k_standard_procedure[] = "standard_procedure"; +static const char __pyx_k_CLEAR_PCT_THRESHOLD[] = "CLEAR_PCT_THRESHOLD"; +static const char __pyx_k_Extend_change_model[] = "Extend change model"; +static const char __pyx_k_determine_num_coefs[] = "determine_num_coefs"; +static const char __pyx_k_Change_detected_at_s[] = "Change detected at: %s"; +static const char __pyx_k_Procedure_selected_s[] = "Procedure selected: %s"; +static const char __pyx_k_Stable_start_found_s[] = "Stable start found: %s"; +static const char __pyx_k_sklearn_linear_model[] = "sklearn.linear_model"; +static const char __pyx_k_Outlier_detected_at_s[] = "Outlier detected at: %s"; +static const char __pyx_k_snow_procedure_filter[] = "snow_procedure_filter"; +static const char __pyx_k_Detecting_change_for_s[] = "Detecting change for %s"; +static const char __pyx_k_results_to_changemodel[] = "results_to_changemodel"; +static const char __pyx_k_update_processing_mask[] = "update_processing_mask"; +static const char __pyx_k_Catching_observations_s[] = "Catching observations: %s"; +static const char __pyx_k_permanent_snow_procedure[] = "permanent_snow_procedure"; +static const char __pyx_k_qa_snow_procedure_filter[] = "qa_snow_procedure_filter"; +static const char __pyx_k_Accumulate_results_so_far[] = "Accumulate results, {} so far"; +static const char __pyx_k_change_detection_complete[] = "change detection complete"; +static const char __pyx_k_insufficient_clear_filter[] = "insufficient_clear_filter"; +static const char __pyx_k_standard_procedure_filter[] = "standard_procedure_filter"; +static const char __pyx_k_Change_detected_for_index_s[] = "Change detected for index: %s"; +static const char __pyx_k_Model_initialization_failed[] = "Model initialization failed"; +static const char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; +static const char __pyx_k_Outlier_detected_for_index_s[] = "Outlier detected for index: %s"; +static const char __pyx_k_RMSE_values_for_comparison_s[] = "RMSE values for comparison: %s"; +static const char __pyx_k_insufficient_clear_procedure[] = "insufficient_clear_procedure"; +static const char __pyx_k_qa_insufficient_clear_filter[] = "qa_insufficient_clear_filter"; +static const char __pyx_k_qa_standard_procedure_filter[] = "qa_standard_procedure_filter"; +static const char __pyx_k_Initialize_for_change_model_s[] = "Initialize for change model #: %s"; +static const char __pyx_k_Previous_break_s_model_window_s[] = "Previous break: %s model window: %s"; +static const char __pyx_k_Processing_mask_initial_count_s[] = "Processing mask initial count: %s"; +static const char __pyx_k_Retrain_models_model_span_s_fit[] = "Retrain models, model_span: %s fit_span: %s"; +static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import"; +static const char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; +static const char __pyx_k_Considering_index_s_using_peek_w[] = "Considering index: %s using peek window: %s"; +static const char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd"; +static const char __pyx_k_Functions_for_providing_the_over[] = "Functions for providing the over-arching methodology. Tying together the\nindividual components that make-up the change detection process. This module\nshould really contain any method that could be considered procedural. Methods\nmust accept the processing parameters, then use those values for the more\nfunctional methods that they call. The hope is that this will eventually get\nconverted more and more away from procedural and move more towards the\nfunctional paradigm.\n\nAny methods determined by the fit_procedure call must accept same 5 arguments,\nin the same order: dates, observations, fitter_fn, quality, proc_params.\n\nThe results of this process is a list-of-lists of change models that correspond\nto observation spectra. A processing mask is also returned, outlining which\nobservations were utilized and which were not.\n\nPre-processing routines are essential to, but distinct from, the core change\ndetection algorithm. See the `ccd.qa` for more details related to this\nstep.\n\nFor more information please refer to the pyccd Algorithm Description Document.\n\n.. _Algorithm Description Document:\n https://drive.google.com/drive/folders/0BzELHvbrg1pDREJlTF8xOHBZbEU\n"; +static const char __pyx_k_Generating_models_to_check_for_s[] = "Generating models to check for stability"; +static const char __pyx_k_Insufficient_time_or_observation[] = "Insufficient time or observations after Tmask, extending model window"; +static const char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported"; +static const char __pyx_k_Number_of_Tmask_outliers_found_s[] = "Number of Tmask outliers found: %s"; +static const char __pyx_k_Retrain_models_less_than_24_samp[] = "Retrain models, less than 24 samples"; +static const char __pyx_k_Tmask_identified_all_values_as_o[] = "Tmask identified all values as outliers"; +static const char __pyx_k_Unstable_model_shift_window_to_s[] = "Unstable model, shift window to: %s"; +static const char __pyx_k_lookforward_initial_model_window[] = "lookforward initial model window: %s"; +static const char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous"; +static const char __pyx_k_numpy_core_umath_failed_to_impor[] = "numpy.core.umath failed to import"; +static const char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short."; +static PyObject *__pyx_n_s_AVG_DAYS_YR; +static PyObject *__pyx_kp_s_Accumulate_results_so_far; +static PyObject *__pyx_n_s_CHANGE_THRESHOLD; +static PyObject *__pyx_n_s_CLEAR_PCT_THRESHOLD; +static PyObject *__pyx_n_s_COEFFICIENT_MAX; +static PyObject *__pyx_n_s_COEFFICIENT_MID; +static PyObject *__pyx_n_s_COEFFICIENT_MIN; +static PyObject *__pyx_n_s_CURVE_QA; +static PyObject *__pyx_kp_s_Catching_observations_s; +static PyObject *__pyx_kp_s_Change_detected_at_s; +static PyObject *__pyx_kp_s_Change_detected_for_index_s; +static PyObject *__pyx_kp_s_Checking_window_s; +static PyObject *__pyx_kp_s_Considering_index_s_using_peek_w; +static PyObject *__pyx_n_s_DAY_DELTA; +static PyObject *__pyx_n_s_DETECTION_BANDS; +static PyObject *__pyx_kp_s_Detecting_change_for_s; +static PyObject *__pyx_n_s_END; +static PyObject *__pyx_kp_s_Extend_change_model; +static PyObject *__pyx_kp_u_Format_string_allocated_too_shor; +static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2; +static PyObject *__pyx_kp_s_Generating_models_to_check_for_s; +static PyObject *__pyx_n_s_INSUF_CLEAR; +static PyObject *__pyx_n_s_ImportError; +static PyObject *__pyx_kp_s_Including_index_s; +static PyObject *__pyx_kp_s_Initial_s; +static PyObject *__pyx_kp_s_Initialize_for_change_model_s; +static PyObject *__pyx_kp_s_Insufficient_time_or_observation; +static PyObject *__pyx_n_s_LASSO_MAX_ITER; +static PyObject *__pyx_n_s_Lasso; +static PyObject *__pyx_n_s_MEOW_SIZE; +static PyObject *__pyx_kp_s_Model_initialization_failed; +static PyObject *__pyx_n_s_NUM_OBS_FACTOR; +static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor; +static PyObject *__pyx_kp_s_Number_of_Tmask_outliers_found_s; +static PyObject *__pyx_n_s_OUTLIER_THRESHOLD; +static PyObject *__pyx_kp_s_Outlier_detected_at_s; +static PyObject *__pyx_kp_s_Outlier_detected_for_index_s; +static PyObject *__pyx_n_s_PEEK_SIZE; +static PyObject *__pyx_n_s_PERSIST_SNOW; +static PyObject *__pyx_kp_s_Previous_break_s_model_window_s; +static PyObject *__pyx_kp_s_Procedure_selected_s; +static PyObject *__pyx_kp_s_Processing_mask_initial_count_s; +static PyObject *__pyx_n_s_QA_CLEAR; +static PyObject *__pyx_n_s_QA_FILL; +static PyObject *__pyx_n_s_QA_SNOW; +static PyObject *__pyx_n_s_QA_WATER; +static PyObject *__pyx_kp_s_RMSE_values_for_comparison_s; +static PyObject *__pyx_kp_s_Retrain_models_less_than_24_samp; +static PyObject *__pyx_kp_s_Retrain_models_model_span_s_fit; +static PyObject *__pyx_n_s_RuntimeError; +static PyObject *__pyx_n_s_SNOW_PCT_THRESHOLD; +static PyObject *__pyx_n_s_START; +static PyObject *__pyx_kp_s_Stable_start_found_s; +static PyObject *__pyx_n_s_THERMAL_IDX; +static PyObject *__pyx_n_s_TMASK_BANDS; +static PyObject *__pyx_n_s_T_CONST; +static PyObject *__pyx_kp_s_Tmask_identified_all_values_as_o; +static PyObject *__pyx_kp_s_Unstable_model_shift_window_to_s; +static PyObject *__pyx_n_s_ValueError; +static PyObject *__pyx_kp_s_Variogram_values_s; +static PyObject *__pyx_n_s_adjusted_variogram; +static PyObject *__pyx_n_s_any; +static PyObject *__pyx_n_s_array; +static PyObject *__pyx_n_s_avg_days_yr; +static PyObject *__pyx_n_s_axis; +static PyObject *__pyx_n_s_break_day; +static PyObject *__pyx_n_s_calc_residuals; +static PyObject *__pyx_n_s_ccd; +static PyObject *__pyx_n_s_ccd_change; +static PyObject *__pyx_n_s_ccd_math_utils; +static PyObject *__pyx_n_s_ccd_models; +static PyObject *__pyx_n_s_ccd_procedures; +static PyObject *__pyx_kp_s_ccd_procedures_pyx; +static PyObject *__pyx_kp_s_change_detection_complete; +static PyObject *__pyx_n_s_change_magnitude; +static PyObject *__pyx_n_s_change_probability; +static PyObject *__pyx_n_s_clear; +static PyObject *__pyx_n_s_clear_thresh; +static PyObject *__pyx_n_s_cline_in_traceback; +static PyObject *__pyx_n_s_curve_qa; +static PyObject *__pyx_n_s_dates; +static PyObject *__pyx_n_s_debug; +static PyObject *__pyx_n_s_detect_change; +static PyObject *__pyx_n_s_detect_outlier; +static PyObject *__pyx_n_s_determine_num_coefs; +static PyObject *__pyx_n_s_end_day; +static PyObject *__pyx_n_s_enough_clear; +static PyObject *__pyx_n_s_enough_samples; +static PyObject *__pyx_n_s_enough_snow; +static PyObject *__pyx_n_s_enough_time; +static PyObject *__pyx_n_s_euclidean_norm; +static PyObject *__pyx_n_s_fill; +static PyObject *__pyx_n_s_find_closest_doy; +static PyObject *__pyx_n_s_fit_max_iter; +static PyObject *__pyx_n_s_fit_procedure; +static PyObject *__pyx_n_s_fitted_models; +static PyObject *__pyx_n_s_fitter_fn; +static PyObject *__pyx_n_s_format; +static PyObject *__pyx_n_s_func; +static PyObject *__pyx_n_s_getLogger; +static PyObject *__pyx_n_s_import; +static PyObject *__pyx_n_s_insufficient_clear_filter; +static PyObject *__pyx_n_s_insufficient_clear_procedure; +static PyObject *__pyx_n_s_kelvin_to_celsius; +static PyObject *__pyx_n_s_ldebug; +static PyObject *__pyx_n_s_log; +static PyObject *__pyx_n_s_logging; +static PyObject *__pyx_kp_s_lookforward_initial_model_window; +static PyObject *__pyx_n_s_magnitudes; +static PyObject *__pyx_n_s_main; +static PyObject *__pyx_n_s_max_iter; +static PyObject *__pyx_n_s_median; +static PyObject *__pyx_n_s_meow_size; +static PyObject *__pyx_n_s_models; +static PyObject *__pyx_n_s_name; +static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; +static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou; +static PyObject *__pyx_n_s_np; +static PyObject *__pyx_n_s_np_array; +static PyObject *__pyx_n_s_np_sum; +static PyObject *__pyx_n_s_np_zeros; +static PyObject *__pyx_n_s_num_coef; +static PyObject *__pyx_n_s_numpy; +static PyObject *__pyx_kp_s_numpy_core_multiarray_failed_to; +static PyObject *__pyx_kp_s_numpy_core_umath_failed_to_impor; +static PyObject *__pyx_n_s_observation_count; +static PyObject *__pyx_n_s_observations; +static PyObject *__pyx_n_s_period; +static PyObject *__pyx_n_s_permanent_snow_procedure; +static PyObject *__pyx_n_s_proc_params; +static PyObject *__pyx_n_s_processing_mask; +static PyObject *__pyx_n_s_qa; +static PyObject *__pyx_n_s_qa_enough_clear; +static PyObject *__pyx_n_s_qa_enough_snow; +static PyObject *__pyx_n_s_qa_insufficient_clear_filter; +static PyObject *__pyx_n_s_qa_snow_procedure_filter; +static PyObject *__pyx_n_s_qa_standard_procedure_filter; +static PyObject *__pyx_n_s_quality; +static PyObject *__pyx_n_s_range; +static PyObject *__pyx_n_s_residual; +static PyObject *__pyx_n_s_result; +static PyObject *__pyx_n_s_results_to_changemodel; +static PyObject *__pyx_n_s_rmse; +static PyObject *__pyx_n_s_shape; +static PyObject *__pyx_n_s_sklearn_linear_model; +static PyObject *__pyx_n_s_snow; +static PyObject *__pyx_n_s_snow_procedure_filter; +static PyObject *__pyx_n_s_snow_thresh; +static PyObject *__pyx_n_s_spectral_obs; +static PyObject *__pyx_n_s_spectrum; +static PyObject *__pyx_n_s_stable; +static PyObject *__pyx_n_s_standard_procedure; +static PyObject *__pyx_n_s_standard_procedure_filter; +static PyObject *__pyx_n_s_start; +static PyObject *__pyx_n_s_start_day; +static PyObject *__pyx_n_s_stop; +static PyObject *__pyx_n_s_sum; +static PyObject *__pyx_n_s_test; +static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd; +static PyObject *__pyx_n_s_update_processing_mask; +static PyObject *__pyx_n_s_water; +static PyObject *__pyx_n_s_zeros; +static PyObject *__pyx_pf_3ccd_10procedures_fit_procedure(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_quality, PyObject *__pyx_v_proc_params); /* proto */ +static PyObject *__pyx_pf_3ccd_10procedures_2permanent_snow_procedure(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_dates, PyObject *__pyx_v_observations, PyObject *__pyx_v_fitter_fn, PyObject *__pyx_v_quality, PyObject *__pyx_v_proc_params); /* proto */ +static PyObject *__pyx_pf_3ccd_10procedures_4insufficient_clear_procedure(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_dates, PyObject *__pyx_v_observations, PyObject *__pyx_v_fitter_fn, PyObject *__pyx_v_quality, PyObject *__pyx_v_proc_params); /* proto */ +static PyObject *__pyx_pf_3ccd_10procedures_6standard_procedure(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_dates, PyArrayObject *__pyx_v_observations, PyObject *__pyx_v_fitter_fn, PyArrayObject *__pyx_v_quality, PyObject *__pyx_v_proc_params); /* proto */ +static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ +static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ +static PyObject *__pyx_float_1_33; +static PyObject *__pyx_int_0; +static PyObject *__pyx_int_1; +static PyObject *__pyx_int_4; +static PyObject *__pyx_int_7; +static PyObject *__pyx_int_24; +static PyObject *__pyx_int_neg_1; +static PyObject *__pyx_codeobj_; +static PyObject *__pyx_slice__3; +static PyObject *__pyx_slice__5; +static PyObject *__pyx_slice__6; +static PyObject *__pyx_tuple__7; +static PyObject *__pyx_tuple__8; +static PyObject *__pyx_tuple__9; +static PyObject *__pyx_slice__10; +static PyObject *__pyx_slice__11; +static PyObject *__pyx_slice__14; +static PyObject *__pyx_slice__16; +static PyObject *__pyx_slice__18; +static PyObject *__pyx_slice__19; +static PyObject *__pyx_slice__20; +static PyObject *__pyx_slice__21; +static PyObject *__pyx_slice__22; +static PyObject *__pyx_slice__23; +static PyObject *__pyx_tuple__12; +static PyObject *__pyx_tuple__13; +static PyObject *__pyx_tuple__15; +static PyObject *__pyx_tuple__17; +static PyObject *__pyx_tuple__24; +static PyObject *__pyx_tuple__25; +static PyObject *__pyx_tuple__26; +static PyObject *__pyx_tuple__27; +static PyObject *__pyx_tuple__28; +static PyObject *__pyx_tuple__29; +static PyObject *__pyx_tuple__30; +static PyObject *__pyx_tuple__31; +static PyObject *__pyx_tuple__32; +static PyObject *__pyx_tuple__33; +static PyObject *__pyx_tuple__34; +static PyObject *__pyx_tuple__35; +static PyObject *__pyx_tuple__36; +static PyObject *__pyx_codeobj__2; +static PyObject *__pyx_codeobj__4; + +/* "ccd/procedures.pyx":61 + * + * + * def fit_procedure(quality, proc_params): # <<<<<<<<<<<<<< + * """Determine which curve fitting method to use + * + */ + +/* Python wrapper */ +static PyObject *__pyx_pw_3ccd_10procedures_1fit_procedure(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ +static char __pyx_doc_3ccd_10procedures_fit_procedure[] = "Determine which curve fitting method to use\n\n This is based on information from the QA band\n\n Args:\n quality: QA information for each observation\n proc_params: dictionary of processing parameters\n\n Returns:\n method: the corresponding method that will be use to generate\n the curves\n "; +static PyMethodDef __pyx_mdef_3ccd_10procedures_1fit_procedure = {"fit_procedure", (PyCFunction)__pyx_pw_3ccd_10procedures_1fit_procedure, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3ccd_10procedures_fit_procedure}; +static PyObject *__pyx_pw_3ccd_10procedures_1fit_procedure(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { + PyObject *__pyx_v_quality = 0; + PyObject *__pyx_v_proc_params = 0; + PyObject *__pyx_r = 0; + __Pyx_RefNannyDeclarations + __Pyx_RefNannySetupContext("fit_procedure (wrapper)", 0); + { + static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_quality,&__pyx_n_s_proc_params,0}; + PyObject* values[2] = {0,0}; + if (unlikely(__pyx_kwds)) { + Py_ssize_t kw_args; + const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args); + switch (pos_args) { + case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); + CYTHON_FALLTHROUGH; + case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); + CYTHON_FALLTHROUGH; + case 0: break; + default: goto __pyx_L5_argtuple_error; + } + kw_args = PyDict_Size(__pyx_kwds); + switch (pos_args) { + case 0: + if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_quality)) != 0)) kw_args--; + else goto __pyx_L5_argtuple_error; + CYTHON_FALLTHROUGH; + case 1: + if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_proc_params)) != 0)) kw_args--; + else { + __Pyx_RaiseArgtupleInvalid("fit_procedure", 1, 2, 2, 1); __PYX_ERR(0, 61, __pyx_L3_error) + } + } + if (unlikely(kw_args > 0)) { + if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "fit_procedure") < 0)) __PYX_ERR(0, 61, __pyx_L3_error) + } + } else if (PyTuple_GET_SIZE(__pyx_args) != 2) { + goto __pyx_L5_argtuple_error; + } else { + values[0] = PyTuple_GET_ITEM(__pyx_args, 0); + values[1] = PyTuple_GET_ITEM(__pyx_args, 1); + } + __pyx_v_quality = values[0]; + __pyx_v_proc_params = values[1]; + } + goto __pyx_L4_argument_unpacking_done; + __pyx_L5_argtuple_error:; + __Pyx_RaiseArgtupleInvalid("fit_procedure", 1, 2, 2, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 61, __pyx_L3_error) + __pyx_L3_error:; + __Pyx_AddTraceback("ccd.procedures.fit_procedure", __pyx_clineno, __pyx_lineno, __pyx_filename); + __Pyx_RefNannyFinishContext(); + return NULL; + __pyx_L4_argument_unpacking_done:; + __pyx_r = __pyx_pf_3ccd_10procedures_fit_procedure(__pyx_self, __pyx_v_quality, __pyx_v_proc_params); + + /* function exit code */ + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + +static PyObject *__pyx_pf_3ccd_10procedures_fit_procedure(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_quality, PyObject *__pyx_v_proc_params) { + PyObject *__pyx_v_clear = NULL; + PyObject *__pyx_v_water = NULL; + PyObject *__pyx_v_fill = NULL; + PyObject *__pyx_v_snow = NULL; + PyObject *__pyx_v_clear_thresh = NULL; + PyObject *__pyx_v_snow_thresh = NULL; + PyObject *__pyx_v_func = NULL; + PyObject *__pyx_r = NULL; + __Pyx_TraceDeclarations + __Pyx_RefNannyDeclarations + PyObject *__pyx_t_1 = NULL; + PyObject *__pyx_t_2 = NULL; + PyObject *__pyx_t_3 = NULL; + int __pyx_t_4; + PyObject *__pyx_t_5 = NULL; + int __pyx_t_6; + int __pyx_t_7; + PyObject *__pyx_t_8 = NULL; + __Pyx_TraceFrameInit(__pyx_codeobj_) + __Pyx_RefNannySetupContext("fit_procedure", 0); + __Pyx_TraceCall("fit_procedure", __pyx_f[0], 61, 0, __PYX_ERR(0, 61, __pyx_L1_error)); + + /* "ccd/procedures.pyx":75 + * """ + * # TODO do this better + * clear = proc_params['QA_CLEAR'] # <<<<<<<<<<<<<< + * water = proc_params['QA_WATER'] + * fill = proc_params['QA_FILL'] + */ + __pyx_t_1 = PyObject_GetItem(__pyx_v_proc_params, __pyx_n_s_QA_CLEAR); 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This module + */ + __pyx_t_4 = PyDict_New(); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 1, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_4); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_4) < 0) __PYX_ERR(0, 1, __pyx_L1_error) + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + + /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":997 + * raise ImportError("numpy.core.umath failed to import") + * + * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<< + * try: + * _import_umath() + */ + __Pyx_TraceReturn(Py_None, 0); + + /*--- Wrapped vars code ---*/ + + goto __pyx_L0; + __pyx_L1_error:; + __Pyx_XDECREF(__pyx_t_1); + __Pyx_XDECREF(__pyx_t_2); + __Pyx_XDECREF(__pyx_t_3); + __Pyx_XDECREF(__pyx_t_4); + __Pyx_XDECREF(__pyx_t_5); + __Pyx_XDECREF(__pyx_t_6); + if (__pyx_m) { + if (__pyx_d) { + __Pyx_AddTraceback("init ccd.procedures", 0, __pyx_lineno, __pyx_filename); + } + Py_DECREF(__pyx_m); __pyx_m = 0; + } else if (!PyErr_Occurred()) { + PyErr_SetString(PyExc_ImportError, "init ccd.procedures"); + } + __pyx_L0:; + __Pyx_RefNannyFinishContext(); + #if PY_MAJOR_VERSION < 3 + return; + #else + return __pyx_m; + #endif +} + +/* --- Runtime support code --- */ +/* Refnanny */ +#if CYTHON_REFNANNY +static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) { + PyObject *m = NULL, *p = NULL; + void *r = NULL; + m = PyImport_ImportModule((char *)modname); + if (!m) goto end; + p = PyObject_GetAttrString(m, (char *)"RefNannyAPI"); + if (!p) goto end; + r = PyLong_AsVoidPtr(p); +end: + Py_XDECREF(p); + Py_XDECREF(m); + return (__Pyx_RefNannyAPIStruct *)r; +} +#endif + +/* GetBuiltinName */ +static PyObject *__Pyx_GetBuiltinName(PyObject *name) { + PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name); + if (unlikely(!result)) { + PyErr_Format(PyExc_NameError, +#if PY_MAJOR_VERSION >= 3 + "name '%U' is not defined", name); +#else + "name '%.200s' is not defined", PyString_AS_STRING(name)); +#endif + } + return result; +} + +/* RaiseArgTupleInvalid */ +static void __Pyx_RaiseArgtupleInvalid( + const char* func_name, + int exact, + Py_ssize_t num_min, + Py_ssize_t num_max, + Py_ssize_t num_found) +{ + Py_ssize_t num_expected; + const char *more_or_less; + if (num_found < num_min) { + num_expected = num_min; + more_or_less = "at least"; + } else { + num_expected = num_max; + more_or_less = "at most"; + } + if (exact) { + more_or_less = "exactly"; + } + PyErr_Format(PyExc_TypeError, + "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", + func_name, more_or_less, num_expected, + (num_expected == 1) ? "" : "s", num_found); +} + +/* RaiseDoubleKeywords */ +static void __Pyx_RaiseDoubleKeywordsError( + const char* func_name, + PyObject* kw_name) +{ + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION >= 3 + "%s() got multiple values for keyword argument '%U'", func_name, kw_name); + #else + "%s() got multiple values for keyword argument '%s'", func_name, + PyString_AsString(kw_name)); + #endif +} + +/* ParseKeywords */ +static int __Pyx_ParseOptionalKeywords( + PyObject *kwds, + PyObject **argnames[], + PyObject *kwds2, + PyObject *values[], + Py_ssize_t num_pos_args, + const char* function_name) +{ + PyObject *key = 0, *value = 0; + Py_ssize_t pos = 0; + PyObject*** name; + PyObject*** first_kw_arg = argnames + num_pos_args; + while (PyDict_Next(kwds, &pos, &key, &value)) { + name = first_kw_arg; + while (*name && (**name != key)) name++; + if (*name) { + values[name-argnames] = value; + continue; + } + name = first_kw_arg; + #if PY_MAJOR_VERSION < 3 + if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) { + while (*name) { + if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) + && _PyString_Eq(**name, key)) { + values[name-argnames] = value; + break; + } + name++; + } + if (*name) continue; + else { + PyObject*** argname = argnames; + while (argname != first_kw_arg) { + if ((**argname == key) || ( + (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) + && _PyString_Eq(**argname, key))) { + goto arg_passed_twice; + } + argname++; + } + } + } else + #endif + if (likely(PyUnicode_Check(key))) { + while (*name) { + int cmp = (**name == key) ? 0 : + #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 + (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : + #endif + PyUnicode_Compare(**name, key); + if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; + if (cmp == 0) { + values[name-argnames] = value; + break; + } + name++; + } + if (*name) continue; + else { + PyObject*** argname = argnames; + while (argname != first_kw_arg) { + int cmp = (**argname == key) ? 0 : + #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 + (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : + #endif + PyUnicode_Compare(**argname, key); + if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; + if (cmp == 0) goto arg_passed_twice; + argname++; + } + } + } else + goto invalid_keyword_type; + if (kwds2) { + if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; + } else { + goto invalid_keyword; + } + } + return 0; +arg_passed_twice: + __Pyx_RaiseDoubleKeywordsError(function_name, key); + goto bad; +invalid_keyword_type: + PyErr_Format(PyExc_TypeError, + "%.200s() keywords must be strings", function_name); + goto bad; +invalid_keyword: + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION < 3 + "%.200s() got an unexpected keyword argument '%.200s'", + function_name, PyString_AsString(key)); + #else + "%s() got an unexpected keyword argument '%U'", + function_name, key); + #endif +bad: + return -1; +} + +/* Profile */ +#if CYTHON_PROFILE +static int __Pyx_TraceSetupAndCall(PyCodeObject** code, + PyFrameObject** frame, + const char *funcname, + const char *srcfile, + int firstlineno) { + PyObject *type, *value, *traceback; + int retval; + PyThreadState* tstate = PyThreadState_GET(); + if (*frame == NULL || !CYTHON_PROFILE_REUSE_FRAME) { + if (*code == NULL) { + *code = __Pyx_createFrameCodeObject(funcname, srcfile, firstlineno); + if (*code == NULL) return 0; + } + *frame = PyFrame_New( + tstate, /*PyThreadState *tstate*/ + *code, /*PyCodeObject *code*/ + __pyx_d, /*PyObject *globals*/ + 0 /*PyObject *locals*/ + ); + if (*frame == NULL) return 0; + if (CYTHON_TRACE && (*frame)->f_trace == NULL) { + Py_INCREF(Py_None); + (*frame)->f_trace = Py_None; + } +#if PY_VERSION_HEX < 0x030400B1 + } else { + (*frame)->f_tstate = tstate; +#endif + } + __Pyx_PyFrame_SetLineNumber(*frame, firstlineno); + retval = 1; + tstate->tracing++; + tstate->use_tracing = 0; + PyErr_Fetch(&type, &value, &traceback); + #if CYTHON_TRACE + if (tstate->c_tracefunc) + retval = tstate->c_tracefunc(tstate->c_traceobj, *frame, PyTrace_CALL, NULL) == 0; + if (retval && tstate->c_profilefunc) + #endif + retval = tstate->c_profilefunc(tstate->c_profileobj, *frame, PyTrace_CALL, NULL) == 0; + tstate->use_tracing = (tstate->c_profilefunc || + (CYTHON_TRACE && tstate->c_tracefunc)); + tstate->tracing--; + if (retval) { + PyErr_Restore(type, value, traceback); + return tstate->use_tracing && retval; + } else { + Py_XDECREF(type); + Py_XDECREF(value); + Py_XDECREF(traceback); + return -1; + } +} +static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno) { + PyObject *py_srcfile = 0; + PyObject *py_funcname = 0; + PyCodeObject *py_code = 0; + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromString(funcname); + py_srcfile = PyString_FromString(srcfile); + #else + py_funcname = PyUnicode_FromString(funcname); + py_srcfile = PyUnicode_FromString(srcfile); + #endif + if (!py_funcname | !py_srcfile) goto bad; + py_code = PyCode_New( + 0, + #if PY_MAJOR_VERSION >= 3 + 0, + #endif + 0, + 0, + 0, + __pyx_empty_bytes, /*PyObject *code,*/ + __pyx_empty_tuple, /*PyObject *consts,*/ + __pyx_empty_tuple, /*PyObject *names,*/ + __pyx_empty_tuple, /*PyObject *varnames,*/ + __pyx_empty_tuple, /*PyObject *freevars,*/ + __pyx_empty_tuple, /*PyObject *cellvars,*/ + py_srcfile, /*PyObject *filename,*/ + py_funcname, /*PyObject *name,*/ + firstlineno, + __pyx_empty_bytes /*PyObject *lnotab*/ + ); +bad: + Py_XDECREF(py_srcfile); + Py_XDECREF(py_funcname); + return py_code; +} +#endif + +/* GetModuleGlobalName */ +static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { + PyObject *result; +#if !CYTHON_AVOID_BORROWED_REFS + result = PyDict_GetItem(__pyx_d, name); + if (likely(result)) { + Py_INCREF(result); + } else { +#else + result = PyObject_GetItem(__pyx_d, name); + if (!result) { + PyErr_Clear(); +#endif + result = __Pyx_GetBuiltinName(name); + } + return result; +} + +/* PyFunctionFastCall */ + #if CYTHON_FAST_PYCALL +#include "frameobject.h" +static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na, + PyObject *globals) { + PyFrameObject *f; + PyThreadState *tstate = PyThreadState_GET(); + PyObject **fastlocals; + Py_ssize_t i; + PyObject *result; + assert(globals != NULL); + /* XXX Perhaps we should create a specialized + PyFrame_New() that doesn't take locals, but does + take builtins without sanity checking them. + */ + assert(tstate != NULL); + f = PyFrame_New(tstate, co, globals, NULL); + if (f == NULL) { + return NULL; + } + fastlocals = f->f_localsplus; + for (i = 0; i < na; i++) { + Py_INCREF(*args); + fastlocals[i] = *args++; + } + result = PyEval_EvalFrameEx(f,0); + ++tstate->recursion_depth; + Py_DECREF(f); + --tstate->recursion_depth; + return result; +} +#if 1 || PY_VERSION_HEX < 0x030600B1 +static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs) { + PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func); + PyObject *globals = PyFunction_GET_GLOBALS(func); + PyObject *argdefs = PyFunction_GET_DEFAULTS(func); + PyObject *closure; +#if PY_MAJOR_VERSION >= 3 + PyObject *kwdefs; +#endif + PyObject *kwtuple, **k; + PyObject **d; + Py_ssize_t nd; + Py_ssize_t nk; + PyObject *result; + assert(kwargs == NULL || PyDict_Check(kwargs)); + nk = kwargs ? PyDict_Size(kwargs) : 0; + if (Py_EnterRecursiveCall((char*)" while calling a Python object")) { + return NULL; + } + if ( +#if PY_MAJOR_VERSION >= 3 + co->co_kwonlyargcount == 0 && +#endif + likely(kwargs == NULL || nk == 0) && + co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) { + if (argdefs == NULL && co->co_argcount == nargs) { + result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals); + goto done; + } + else if (nargs == 0 && argdefs != NULL + && co->co_argcount == Py_SIZE(argdefs)) { + /* function called with no arguments, but all parameters have + a default value: use default values as arguments .*/ + args = &PyTuple_GET_ITEM(argdefs, 0); + result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals); + goto done; + } + } + if (kwargs != NULL) { + Py_ssize_t pos, i; + kwtuple = PyTuple_New(2 * nk); + if (kwtuple == NULL) { + result = NULL; + goto done; + } + k = &PyTuple_GET_ITEM(kwtuple, 0); + pos = i = 0; + while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) { + Py_INCREF(k[i]); + Py_INCREF(k[i+1]); + i += 2; + } + nk = i / 2; + } + else { + kwtuple = NULL; + k = NULL; + } + closure = PyFunction_GET_CLOSURE(func); +#if PY_MAJOR_VERSION >= 3 + kwdefs = PyFunction_GET_KW_DEFAULTS(func); +#endif + if (argdefs != NULL) { + d = &PyTuple_GET_ITEM(argdefs, 0); + nd = Py_SIZE(argdefs); + } + else { + d = NULL; + nd = 0; + } +#if PY_MAJOR_VERSION >= 3 + result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL, + args, nargs, + k, (int)nk, + d, (int)nd, kwdefs, closure); +#else + result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL, + args, nargs, + k, (int)nk, + d, (int)nd, closure); +#endif + Py_XDECREF(kwtuple); +done: + Py_LeaveRecursiveCall(); + return result; +} +#endif +#endif + +/* PyCFunctionFastCall */ + #if CYTHON_FAST_PYCCALL +static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, PyObject **args, Py_ssize_t nargs) { + PyCFunctionObject *func = (PyCFunctionObject*)func_obj; + PyCFunction meth = PyCFunction_GET_FUNCTION(func); + PyObject *self = PyCFunction_GET_SELF(func); + int flags = PyCFunction_GET_FLAGS(func); + assert(PyCFunction_Check(func)); + assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))); + assert(nargs >= 0); + assert(nargs == 0 || args != NULL); + /* _PyCFunction_FastCallDict() must not be called with an exception set, + because it may clear it (directly or indirectly) and so the + caller loses its exception */ + assert(!PyErr_Occurred()); + if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) { + return (*((__Pyx_PyCFunctionFastWithKeywords)meth)) (self, args, nargs, NULL); + } else { + return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs); + } +} +#endif + +/* PyObjectCall */ + #if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { + PyObject *result; + ternaryfunc call = func->ob_type->tp_call; + if (unlikely(!call)) + return PyObject_Call(func, arg, kw); + if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) + return NULL; + result = (*call)(func, arg, kw); + Py_LeaveRecursiveCall(); + if (unlikely(!result) && unlikely(!PyErr_Occurred())) { + PyErr_SetString( + PyExc_SystemError, + "NULL result without error in PyObject_Call"); + } + return result; +} +#endif + +/* PyObjectCallMethO */ + #if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { + PyObject *self, *result; + PyCFunction cfunc; + cfunc = PyCFunction_GET_FUNCTION(func); + self = PyCFunction_GET_SELF(func); + if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) + return NULL; + result = cfunc(self, arg); + Py_LeaveRecursiveCall(); + if (unlikely(!result) && unlikely(!PyErr_Occurred())) { + PyErr_SetString( + PyExc_SystemError, + "NULL result without error in PyObject_Call"); + } + return result; +} +#endif + +/* PyObjectCallOneArg */ + #if CYTHON_COMPILING_IN_CPYTHON +static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) { + PyObject *result; + PyObject *args = PyTuple_New(1); + if (unlikely(!args)) return NULL; + Py_INCREF(arg); + PyTuple_SET_ITEM(args, 0, arg); + result = __Pyx_PyObject_Call(func, args, NULL); + Py_DECREF(args); + return result; +} +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { +#if CYTHON_FAST_PYCALL + if (PyFunction_Check(func)) { + return __Pyx_PyFunction_FastCall(func, &arg, 1); + } +#endif + if (likely(PyCFunction_Check(func))) { + if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { + return __Pyx_PyObject_CallMethO(func, arg); +#if CYTHON_FAST_PYCCALL + } else if (PyCFunction_GET_FLAGS(func) & METH_FASTCALL) { + return __Pyx_PyCFunction_FastCall(func, &arg, 1); +#endif + } + } + return __Pyx__PyObject_CallOneArg(func, arg); +} +#else +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { + PyObject *result; + PyObject *args = PyTuple_Pack(1, arg); + if (unlikely(!args)) return NULL; + result = __Pyx_PyObject_Call(func, args, NULL); + Py_DECREF(args); + return result; +} +#endif + +/* GetItemInt */ + static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { + PyObject *r; + if (!j) return NULL; + r = PyObject_GetItem(o, j); + Py_DECREF(j); + return r; +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + Py_ssize_t wrapped_i = i; + if (wraparound & unlikely(i < 0)) { + wrapped_i += PyList_GET_SIZE(o); + } + if ((!boundscheck) || likely((0 <= wrapped_i) & (wrapped_i < PyList_GET_SIZE(o)))) { + PyObject *r = PyList_GET_ITEM(o, wrapped_i); + Py_INCREF(r); + return r; + } + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +#else + return PySequence_GetItem(o, i); +#endif +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + Py_ssize_t wrapped_i = i; + if (wraparound & unlikely(i < 0)) { + wrapped_i += PyTuple_GET_SIZE(o); + } + if ((!boundscheck) || likely((0 <= wrapped_i) & (wrapped_i < PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, wrapped_i); + Py_INCREF(r); + return r; + } + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +#else + return PySequence_GetItem(o, i); +#endif +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS + if (is_list || PyList_CheckExact(o)) { + Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); + if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) { + PyObject *r = PyList_GET_ITEM(o, n); + Py_INCREF(r); + return r; + } + } + else if (PyTuple_CheckExact(o)) { + Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); + if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, n); + Py_INCREF(r); + return r; + } + } else { + PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; + if (likely(m && m->sq_item)) { + if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { + Py_ssize_t l = m->sq_length(o); + if (likely(l >= 0)) { + i += l; + } else { + if (!PyErr_ExceptionMatches(PyExc_OverflowError)) + return NULL; + PyErr_Clear(); + } + } + return m->sq_item(o, i); + } + } +#else + if (is_list || PySequence_Check(o)) { + return PySequence_GetItem(o, i); + } +#endif + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +} + +/* BufferFormatCheck */ + static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { + unsigned int n = 1; + return *(unsigned char*)(&n) != 0; +} +static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, + __Pyx_BufFmt_StackElem* stack, + __Pyx_TypeInfo* type) { + stack[0].field = &ctx->root; + stack[0].parent_offset = 0; + ctx->root.type = type; + ctx->root.name = "buffer dtype"; + ctx->root.offset = 0; + ctx->head = stack; + ctx->head->field = &ctx->root; + ctx->fmt_offset = 0; + ctx->head->parent_offset = 0; + ctx->new_packmode = '@'; + ctx->enc_packmode = '@'; + ctx->new_count = 1; + ctx->enc_count = 0; + ctx->enc_type = 0; + ctx->is_complex = 0; + ctx->is_valid_array = 0; + ctx->struct_alignment = 0; + while (type->typegroup == 'S') { + ++ctx->head; + ctx->head->field = type->fields; + ctx->head->parent_offset = 0; + type = type->fields->type; + } +} +static int __Pyx_BufFmt_ParseNumber(const char** ts) { + int count; + const char* t = *ts; + if (*t < '0' || *t > '9') { + return -1; + } else { + count = *t++ - '0'; + while (*t >= '0' && *t < '9') { + count *= 10; + count += *t++ - '0'; + } + } + *ts = t; + return count; +} +static int __Pyx_BufFmt_ExpectNumber(const char **ts) { + int number = __Pyx_BufFmt_ParseNumber(ts); + if (number == -1) + PyErr_Format(PyExc_ValueError,\ + "Does not understand character buffer dtype format string ('%c')", **ts); + return number; +} +static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) { + PyErr_Format(PyExc_ValueError, + "Unexpected format string character: '%c'", ch); +} +static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) { + switch (ch) { + case 'c': return "'char'"; + case 'b': return "'signed char'"; + case 'B': return "'unsigned char'"; + case 'h': return "'short'"; + case 'H': return "'unsigned short'"; + case 'i': return "'int'"; + case 'I': return "'unsigned int'"; + case 'l': return "'long'"; + case 'L': return "'unsigned long'"; + case 'q': return "'long long'"; + case 'Q': return "'unsigned long long'"; + case 'f': return (is_complex ? "'complex float'" : "'float'"); + case 'd': return (is_complex ? "'complex double'" : "'double'"); + case 'g': return (is_complex ? "'complex long double'" : "'long double'"); + case 'T': return "a struct"; + case 'O': return "Python object"; + case 'P': return "a pointer"; + case 's': case 'p': return "a string"; + case 0: return "end"; + default: return "unparseable format string"; + } +} +static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) { + switch (ch) { + case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return 2; + case 'i': case 'I': case 'l': case 'L': return 4; + case 'q': case 'Q': return 8; + case 'f': return (is_complex ? 8 : 4); + case 'd': return (is_complex ? 16 : 8); + case 'g': { + PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g').."); + return 0; + } + case 'O': case 'P': return sizeof(void*); + default: + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } +} +static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) { + switch (ch) { + case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return sizeof(short); + case 'i': case 'I': return sizeof(int); + case 'l': case 'L': return sizeof(long); + #ifdef HAVE_LONG_LONG + case 'q': case 'Q': return sizeof(PY_LONG_LONG); + #endif + case 'f': return sizeof(float) * (is_complex ? 2 : 1); + case 'd': return sizeof(double) * (is_complex ? 2 : 1); + case 'g': return sizeof(long double) * (is_complex ? 2 : 1); + case 'O': case 'P': return sizeof(void*); + default: { + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } + } +} +typedef struct { char c; short x; } __Pyx_st_short; +typedef struct { char c; int x; } __Pyx_st_int; +typedef struct { char c; long x; } __Pyx_st_long; +typedef struct { char c; float x; } __Pyx_st_float; +typedef struct { char c; double x; } __Pyx_st_double; +typedef struct { char c; long double x; } __Pyx_st_longdouble; +typedef struct { char c; void *x; } __Pyx_st_void_p; +#ifdef HAVE_LONG_LONG +typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong; +#endif +static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) { + switch (ch) { + case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short); + case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int); + case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long); +#ifdef HAVE_LONG_LONG + case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG); +#endif + case 'f': return sizeof(__Pyx_st_float) - sizeof(float); + case 'd': return sizeof(__Pyx_st_double) - sizeof(double); + case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double); + case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*); + default: + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } +} +/* These are for computing the padding at the end of the struct to align + on the first member of the struct. This will probably the same as above, + but we don't have any guarantees. + */ +typedef struct { short x; char c; } __Pyx_pad_short; +typedef struct { int x; char c; } __Pyx_pad_int; +typedef struct { long x; char c; } __Pyx_pad_long; +typedef struct { float x; char c; } __Pyx_pad_float; +typedef struct { double x; char c; } __Pyx_pad_double; +typedef struct { long double x; char c; } __Pyx_pad_longdouble; +typedef struct { void *x; char c; } __Pyx_pad_void_p; +#ifdef HAVE_LONG_LONG +typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong; +#endif +static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) { + switch (ch) { + case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short); + case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int); + case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long); +#ifdef HAVE_LONG_LONG + case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG); +#endif + case 'f': return sizeof(__Pyx_pad_float) - sizeof(float); + case 'd': return sizeof(__Pyx_pad_double) - sizeof(double); + case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double); + case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*); + default: + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } +} +static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) { + switch (ch) { + case 'c': + return 'H'; + case 'b': case 'h': case 'i': + case 'l': case 'q': case 's': case 'p': + return 'I'; + case 'B': case 'H': case 'I': case 'L': case 'Q': + return 'U'; + case 'f': case 'd': case 'g': + return (is_complex ? 'C' : 'R'); + case 'O': + return 'O'; + case 'P': + return 'P'; + default: { + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } + } +} +static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) { + if (ctx->head == NULL || ctx->head->field == &ctx->root) { + const char* expected; + const char* quote; + if (ctx->head == NULL) { + expected = "end"; + quote = ""; + } else { + expected = ctx->head->field->type->name; + quote = "'"; + } + PyErr_Format(PyExc_ValueError, + "Buffer dtype mismatch, expected %s%s%s but got %s", + quote, expected, quote, + __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex)); + } else { + __Pyx_StructField* field = ctx->head->field; + __Pyx_StructField* parent = (ctx->head - 1)->field; + PyErr_Format(PyExc_ValueError, + "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'", + field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex), + parent->type->name, field->name); + } +} +static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) { + char group; + size_t size, offset, arraysize = 1; + if (ctx->enc_type == 0) return 0; + if (ctx->head->field->type->arraysize[0]) { + int i, ndim = 0; + if (ctx->enc_type == 's' || ctx->enc_type == 'p') { + ctx->is_valid_array = ctx->head->field->type->ndim == 1; + ndim = 1; + if (ctx->enc_count != ctx->head->field->type->arraysize[0]) { + PyErr_Format(PyExc_ValueError, + "Expected a dimension of size %zu, got %zu", + ctx->head->field->type->arraysize[0], ctx->enc_count); + return -1; + } + } + if (!ctx->is_valid_array) { + PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d", + ctx->head->field->type->ndim, ndim); + return -1; + } + for (i = 0; i < ctx->head->field->type->ndim; i++) { + arraysize *= ctx->head->field->type->arraysize[i]; + } + ctx->is_valid_array = 0; + ctx->enc_count = 1; + } + group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex); + do { + __Pyx_StructField* field = ctx->head->field; + __Pyx_TypeInfo* type = field->type; + if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') { + size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex); + } else { + size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex); + } + if (ctx->enc_packmode == '@') { + size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex); + size_t align_mod_offset; + if (align_at == 0) return -1; + align_mod_offset = ctx->fmt_offset % align_at; + if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset; + if (ctx->struct_alignment == 0) + ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type, + ctx->is_complex); + } + if (type->size != size || type->typegroup != group) { + if (type->typegroup == 'C' && type->fields != NULL) { + size_t parent_offset = ctx->head->parent_offset + field->offset; + ++ctx->head; + ctx->head->field = type->fields; + ctx->head->parent_offset = parent_offset; + continue; + } + if ((type->typegroup == 'H' || group == 'H') && type->size == size) { + } else { + __Pyx_BufFmt_RaiseExpected(ctx); + return -1; + } + } + offset = ctx->head->parent_offset + field->offset; + if (ctx->fmt_offset != offset) { + PyErr_Format(PyExc_ValueError, + "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected", + (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset); + return -1; + } + ctx->fmt_offset += size; + if (arraysize) + ctx->fmt_offset += (arraysize - 1) * size; + --ctx->enc_count; + while (1) { + if (field == &ctx->root) { + ctx->head = NULL; + if (ctx->enc_count != 0) { + __Pyx_BufFmt_RaiseExpected(ctx); + return -1; + } + break; + } + ctx->head->field = ++field; + if (field->type == NULL) { + --ctx->head; + field = ctx->head->field; + continue; + } else if (field->type->typegroup == 'S') { + size_t parent_offset = ctx->head->parent_offset + field->offset; + if (field->type->fields->type == NULL) continue; + field = field->type->fields; + ++ctx->head; + ctx->head->field = field; + ctx->head->parent_offset = parent_offset; + break; + } else { + break; + } + } + } while (ctx->enc_count); + ctx->enc_type = 0; + ctx->is_complex = 0; + return 0; +} +static CYTHON_INLINE PyObject * +__pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp) +{ + const char *ts = *tsp; + int i = 0, number; + int ndim = ctx->head->field->type->ndim; +; + ++ts; + if (ctx->new_count != 1) { + PyErr_SetString(PyExc_ValueError, + "Cannot handle repeated arrays in format string"); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + while (*ts && *ts != ')') { + switch (*ts) { + case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue; + default: break; + } + number = __Pyx_BufFmt_ExpectNumber(&ts); + if (number == -1) return NULL; + if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i]) + return PyErr_Format(PyExc_ValueError, + "Expected a dimension of size %zu, got %d", + ctx->head->field->type->arraysize[i], number); + if (*ts != ',' && *ts != ')') + return PyErr_Format(PyExc_ValueError, + "Expected a comma in format string, got '%c'", *ts); + if (*ts == ',') ts++; + i++; + } + if (i != ndim) + return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d", + ctx->head->field->type->ndim, i); + if (!*ts) { + PyErr_SetString(PyExc_ValueError, + "Unexpected end of format string, expected ')'"); + return NULL; + } + ctx->is_valid_array = 1; + ctx->new_count = 1; + *tsp = ++ts; + return Py_None; +} +static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) { + int got_Z = 0; + while (1) { + switch(*ts) { + case 0: + if (ctx->enc_type != 0 && ctx->head == NULL) { + __Pyx_BufFmt_RaiseExpected(ctx); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + if (ctx->head != NULL) { + __Pyx_BufFmt_RaiseExpected(ctx); + return NULL; + } + return ts; + case ' ': + case '\r': + case '\n': + ++ts; + break; + case '<': + if (!__Pyx_IsLittleEndian()) { + PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler"); + return NULL; + } + ctx->new_packmode = '='; + ++ts; + break; + case '>': + case '!': + if (__Pyx_IsLittleEndian()) { + PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler"); + return NULL; + } + ctx->new_packmode = '='; + ++ts; + break; + case '=': + case '@': + case '^': + ctx->new_packmode = *ts++; + break; + case 'T': + { + const char* ts_after_sub; + size_t i, struct_count = ctx->new_count; + size_t struct_alignment = ctx->struct_alignment; + ctx->new_count = 1; + ++ts; + if (*ts != '{') { + PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'"); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_type = 0; + ctx->enc_count = 0; + ctx->struct_alignment = 0; + ++ts; + ts_after_sub = ts; + for (i = 0; i != struct_count; ++i) { + ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts); + if (!ts_after_sub) return NULL; + } + ts = ts_after_sub; + if (struct_alignment) ctx->struct_alignment = struct_alignment; + } + break; + case '}': + { + size_t alignment = ctx->struct_alignment; + ++ts; + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_type = 0; + if (alignment && ctx->fmt_offset % alignment) { + ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment); + } + } + return ts; + case 'x': + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->fmt_offset += ctx->new_count; + ctx->new_count = 1; + ctx->enc_count = 0; + ctx->enc_type = 0; + ctx->enc_packmode = ctx->new_packmode; + ++ts; + break; + case 'Z': + got_Z = 1; + ++ts; + if (*ts != 'f' && *ts != 'd' && *ts != 'g') { + __Pyx_BufFmt_RaiseUnexpectedChar('Z'); + return NULL; + } + case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I': + case 'l': case 'L': case 'q': case 'Q': + case 'f': case 'd': case 'g': + case 'O': case 'p': + if (ctx->enc_type == *ts && got_Z == ctx->is_complex && + ctx->enc_packmode == ctx->new_packmode) { + ctx->enc_count += ctx->new_count; + ctx->new_count = 1; + got_Z = 0; + ++ts; + break; + } + case 's': + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_count = ctx->new_count; + ctx->enc_packmode = ctx->new_packmode; + ctx->enc_type = *ts; + ctx->is_complex = got_Z; + ++ts; + ctx->new_count = 1; + got_Z = 0; + break; + case ':': + ++ts; + while(*ts != ':') ++ts; + ++ts; + break; + case '(': + if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL; + break; + default: + { + int number = __Pyx_BufFmt_ExpectNumber(&ts); + if (number == -1) return NULL; + ctx->new_count = (size_t)number; + } + } + } +} +static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) { + buf->buf = NULL; + buf->obj = NULL; + buf->strides = __Pyx_zeros; + buf->shape = __Pyx_zeros; + buf->suboffsets = __Pyx_minusones; +} +static CYTHON_INLINE int __Pyx_GetBufferAndValidate( + Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, + int nd, int cast, __Pyx_BufFmt_StackElem* stack) +{ + if (obj == Py_None || obj == NULL) { + __Pyx_ZeroBuffer(buf); + return 0; + } + buf->buf = NULL; + if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail; + if (buf->ndim != nd) { + PyErr_Format(PyExc_ValueError, + "Buffer has wrong number of dimensions (expected %d, got %d)", + nd, buf->ndim); + goto fail; + } + if (!cast) { + __Pyx_BufFmt_Context ctx; + __Pyx_BufFmt_Init(&ctx, stack, dtype); + if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail; + } + if ((unsigned)buf->itemsize != dtype->size) { + PyErr_Format(PyExc_ValueError, + "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)", + buf->itemsize, (buf->itemsize > 1) ? "s" : "", + dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : ""); + goto fail; + } + if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones; + return 0; +fail:; + __Pyx_ZeroBuffer(buf); + return -1; +} +static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { + if (info->buf == NULL) return; + if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL; + __Pyx_ReleaseBuffer(info); +} + +/* Import */ + static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { + PyObject *empty_list = 0; + PyObject *module = 0; + PyObject *global_dict = 0; + PyObject *empty_dict = 0; + PyObject *list; + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_import; + py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); + if (!py_import) + goto bad; + #endif + if (from_list) + list = from_list; + else { + empty_list = PyList_New(0); + if (!empty_list) + goto bad; + list = empty_list; + } + global_dict = PyModule_GetDict(__pyx_m); + if (!global_dict) + goto bad; + empty_dict = PyDict_New(); + if (!empty_dict) + goto bad; + { + #if PY_MAJOR_VERSION >= 3 + if (level == -1) { + if (strchr(__Pyx_MODULE_NAME, '.')) { + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_level = PyInt_FromLong(1); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, 1); + #endif + if (!module) { + if (!PyErr_ExceptionMatches(PyExc_ImportError)) + goto bad; + PyErr_Clear(); + } + } + level = 0; + } + #endif + if (!module) { + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_level = PyInt_FromLong(level); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, level); + #endif + } + } +bad: + #if PY_VERSION_HEX < 0x03030000 + Py_XDECREF(py_import); + #endif + Py_XDECREF(empty_list); + Py_XDECREF(empty_dict); + return module; +} + +/* ImportFrom */ + static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { + PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); + if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { + PyErr_Format(PyExc_ImportError, + #if PY_MAJOR_VERSION < 3 + "cannot import name %.230s", PyString_AS_STRING(name)); + #else + "cannot import name %S", name); + #endif + } + return value; +} + +/* ExtTypeTest */ + static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + if (likely(PyObject_TypeCheck(obj, type))) + return 1; + PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", + Py_TYPE(obj)->tp_name, type->tp_name); + return 0; +} + +/* RaiseTooManyValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { + PyErr_Format(PyExc_ValueError, + "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); +} + +/* RaiseNeedMoreValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { + PyErr_Format(PyExc_ValueError, + "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", + index, (index == 1) ? "" : "s"); +} + +/* RaiseNoneIterError */ + static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { + PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); +} + +/* PyErrFetchRestore */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + tmp_type = tstate->curexc_type; + tmp_value = tstate->curexc_value; + tmp_tb = tstate->curexc_traceback; + tstate->curexc_type = type; + tstate->curexc_value = value; + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +} +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { + *type = tstate->curexc_type; + *value = tstate->curexc_value; + *tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +} +#endif + +/* ArgTypeTest */ + static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { + PyErr_Format(PyExc_TypeError, + "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", + name, type->tp_name, Py_TYPE(obj)->tp_name); +} +static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, + const char *name, int exact) +{ + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + if (none_allowed && obj == Py_None) return 1; + else if (exact) { + if (likely(Py_TYPE(obj) == type)) return 1; + #if PY_MAJOR_VERSION == 2 + else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; + #endif + } + else { + if (likely(PyObject_TypeCheck(obj, type))) return 1; + } + __Pyx_RaiseArgumentTypeInvalid(name, obj, type); + return 0; +} + +/* PyIntBinop */ + #if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { + #if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(op1))) { + const long b = intval; + long x; + long a = PyInt_AS_LONG(op1); + x = (long)((unsigned long)a + b); + if (likely((x^a) >= 0 || (x^b) >= 0)) + return PyInt_FromLong(x); + return PyLong_Type.tp_as_number->nb_add(op1, op2); + } + #endif + #if CYTHON_USE_PYLONG_INTERNALS + if (likely(PyLong_CheckExact(op1))) { + const long b = intval; + long a, x; +#ifdef HAVE_LONG_LONG + const PY_LONG_LONG llb = intval; + PY_LONG_LONG lla, llx; +#endif + const digit* digits = ((PyLongObject*)op1)->ob_digit; + const Py_ssize_t size = Py_SIZE(op1); + if (likely(__Pyx_sst_abs(size) <= 1)) { + a = likely(size) ? digits[0] : 0; + if (size == -1) a = -a; + } else { + switch (size) { + case -2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case 2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case -3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case 3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case -4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case 4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + default: return PyLong_Type.tp_as_number->nb_add(op1, op2); + } + } + x = a + b; + return PyLong_FromLong(x); +#ifdef HAVE_LONG_LONG + long_long: + llx = lla + llb; + return PyLong_FromLongLong(llx); +#endif + + + } + #endif + if (PyFloat_CheckExact(op1)) { + const long b = intval; + double a = PyFloat_AS_DOUBLE(op1); + double result; + PyFPE_START_PROTECT("add", return NULL) + result = ((double)a) + (double)b; + PyFPE_END_PROTECT(result) + return PyFloat_FromDouble(result); + } + return (inplace ? PyNumber_InPlaceAdd : PyNumber_Add)(op1, op2); +} +#endif + +/* PyIntBinop */ + #if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { + #if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(op1))) { + const long b = intval; + long x; + long a = PyInt_AS_LONG(op1); + x = (long)((unsigned long)a - b); + if (likely((x^a) >= 0 || (x^~b) >= 0)) + return PyInt_FromLong(x); + return PyLong_Type.tp_as_number->nb_subtract(op1, op2); + } + #endif + #if CYTHON_USE_PYLONG_INTERNALS + if (likely(PyLong_CheckExact(op1))) { + const long b = intval; + long a, x; +#ifdef HAVE_LONG_LONG + const PY_LONG_LONG llb = intval; + PY_LONG_LONG lla, llx; +#endif + const digit* digits = ((PyLongObject*)op1)->ob_digit; + const Py_ssize_t size = Py_SIZE(op1); + if (likely(__Pyx_sst_abs(size) <= 1)) { + a = likely(size) ? digits[0] : 0; + if (size == -1) a = -a; + } else { + switch (size) { + case -2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case 2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case -3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case 3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case -4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case 4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + default: return PyLong_Type.tp_as_number->nb_subtract(op1, op2); + } + } + x = a - b; + return PyLong_FromLong(x); +#ifdef HAVE_LONG_LONG + long_long: + llx = lla - llb; + return PyLong_FromLongLong(llx); +#endif + + + } + #endif + if (PyFloat_CheckExact(op1)) { + const long b = intval; + double a = PyFloat_AS_DOUBLE(op1); + double result; + PyFPE_START_PROTECT("subtract", return NULL) + result = ((double)a) - (double)b; + PyFPE_END_PROTECT(result) + return PyFloat_FromDouble(result); + } + return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2); +} +#endif + +/* None */ + static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) { + PyErr_Format(PyExc_UnboundLocalError, "local variable '%s' referenced before assignment", varname); +} + +/* SaveResetException */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { + *type = tstate->exc_type; + *value = tstate->exc_value; + *tb = tstate->exc_traceback; + Py_XINCREF(*type); + Py_XINCREF(*value); + Py_XINCREF(*tb); +} +static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + tmp_type = tstate->exc_type; + tmp_value = tstate->exc_value; + tmp_tb = tstate->exc_traceback; + tstate->exc_type = type; + tstate->exc_value = value; + tstate->exc_traceback = tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +} +#endif + +/* GetException */ + #if CYTHON_FAST_THREAD_STATE +static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { +#else +static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { +#endif + PyObject *local_type, *local_value, *local_tb; +#if CYTHON_FAST_THREAD_STATE + PyObject *tmp_type, *tmp_value, *tmp_tb; + local_type = tstate->curexc_type; + local_value = tstate->curexc_value; + local_tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +#else + PyErr_Fetch(&local_type, &local_value, &local_tb); +#endif + PyErr_NormalizeException(&local_type, &local_value, &local_tb); +#if CYTHON_FAST_THREAD_STATE + if (unlikely(tstate->curexc_type)) +#else + if (unlikely(PyErr_Occurred())) +#endif + goto bad; + #if PY_MAJOR_VERSION >= 3 + if (local_tb) { + if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0)) + goto bad; + } + #endif + Py_XINCREF(local_tb); + Py_XINCREF(local_type); + Py_XINCREF(local_value); + *type = local_type; + *value = local_value; + *tb = local_tb; +#if CYTHON_FAST_THREAD_STATE + tmp_type = tstate->exc_type; + tmp_value = tstate->exc_value; + tmp_tb = tstate->exc_traceback; + tstate->exc_type = local_type; + tstate->exc_value = local_value; + tstate->exc_traceback = local_tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +#else + PyErr_SetExcInfo(local_type, local_value, local_tb); +#endif + return 0; +bad: + *type = 0; + *value = 0; + *tb = 0; + Py_XDECREF(local_type); + Py_XDECREF(local_value); + Py_XDECREF(local_tb); + return -1; +} + +/* RaiseException */ + #if PY_MAJOR_VERSION < 3 +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, + CYTHON_UNUSED PyObject *cause) { + __Pyx_PyThreadState_declare + Py_XINCREF(type); + if (!value || value == Py_None) + value = NULL; + else + Py_INCREF(value); + if (!tb || tb == Py_None) + tb = NULL; + else { + Py_INCREF(tb); + if (!PyTraceBack_Check(tb)) { + PyErr_SetString(PyExc_TypeError, + "raise: arg 3 must be a traceback or None"); + goto raise_error; + } + } + if (PyType_Check(type)) { +#if CYTHON_COMPILING_IN_PYPY + if (!value) { + Py_INCREF(Py_None); + value = Py_None; + } +#endif + PyErr_NormalizeException(&type, &value, &tb); + } else { + if (value) { + PyErr_SetString(PyExc_TypeError, + "instance exception may not have a separate value"); + goto raise_error; + } + value = type; + type = (PyObject*) Py_TYPE(type); + Py_INCREF(type); + if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { + PyErr_SetString(PyExc_TypeError, + "raise: exception class must be a subclass of BaseException"); + goto raise_error; + } + } + __Pyx_PyThreadState_assign + __Pyx_ErrRestore(type, value, tb); + return; +raise_error: + Py_XDECREF(value); + Py_XDECREF(type); + Py_XDECREF(tb); + return; +} +#else +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { + PyObject* owned_instance = NULL; + if (tb == Py_None) { + tb = 0; + } else if (tb && !PyTraceBack_Check(tb)) { + PyErr_SetString(PyExc_TypeError, + "raise: arg 3 must be a traceback or None"); + goto bad; + } + if (value == Py_None) + value = 0; + if (PyExceptionInstance_Check(type)) { + if (value) { + PyErr_SetString(PyExc_TypeError, + "instance exception may not have a separate value"); + goto bad; + } + value = type; + type = (PyObject*) Py_TYPE(value); + } else if (PyExceptionClass_Check(type)) { + PyObject *instance_class = NULL; + if (value && PyExceptionInstance_Check(value)) { + instance_class = (PyObject*) Py_TYPE(value); + if (instance_class != type) { + int is_subclass = PyObject_IsSubclass(instance_class, type); + if (!is_subclass) { + instance_class = NULL; + } else if (unlikely(is_subclass == -1)) { + goto bad; + } else { + type = instance_class; + } + } + } + if (!instance_class) { + PyObject *args; + if (!value) + args = PyTuple_New(0); + else if (PyTuple_Check(value)) { + Py_INCREF(value); + args = value; + } else + args = PyTuple_Pack(1, value); + if (!args) + goto bad; + owned_instance = PyObject_Call(type, args, NULL); + Py_DECREF(args); + if (!owned_instance) + goto bad; + value = owned_instance; + if (!PyExceptionInstance_Check(value)) { + PyErr_Format(PyExc_TypeError, + "calling %R should have returned an instance of " + "BaseException, not %R", + type, Py_TYPE(value)); + goto bad; + } + } + } else { + PyErr_SetString(PyExc_TypeError, + "raise: exception class must be a subclass of BaseException"); + goto bad; + } +#if PY_VERSION_HEX >= 0x03030000 + if (cause) { +#else + if (cause && cause != Py_None) { +#endif + PyObject *fixed_cause; + if (cause == Py_None) { + fixed_cause = NULL; + } else if (PyExceptionClass_Check(cause)) { + fixed_cause = PyObject_CallObject(cause, NULL); + if (fixed_cause == NULL) + goto bad; + } else if (PyExceptionInstance_Check(cause)) { + fixed_cause = cause; + Py_INCREF(fixed_cause); + } else { + PyErr_SetString(PyExc_TypeError, + "exception causes must derive from " + "BaseException"); + goto bad; + } + PyException_SetCause(value, fixed_cause); + } + PyErr_SetObject(type, value); + if (tb) { +#if CYTHON_COMPILING_IN_PYPY + PyObject *tmp_type, *tmp_value, *tmp_tb; + PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb); + Py_INCREF(tb); + PyErr_Restore(tmp_type, tmp_value, tb); + Py_XDECREF(tmp_tb); +#else + PyThreadState *tstate = PyThreadState_GET(); + PyObject* tmp_tb = tstate->curexc_traceback; + if (tb != tmp_tb) { + Py_INCREF(tb); + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_tb); + } +#endif + } +bad: + Py_XDECREF(owned_instance); + return; +} +#endif + +/* WriteUnraisableException */ + static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, + CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename, + int full_traceback, CYTHON_UNUSED int nogil) { + PyObject *old_exc, *old_val, *old_tb; + PyObject *ctx; + __Pyx_PyThreadState_declare +#ifdef WITH_THREAD + PyGILState_STATE state; + if (nogil) + state = PyGILState_Ensure(); +#ifdef _MSC_VER + else state = (PyGILState_STATE)-1; +#endif +#endif + __Pyx_PyThreadState_assign + __Pyx_ErrFetch(&old_exc, &old_val, &old_tb); + if (full_traceback) { + Py_XINCREF(old_exc); + Py_XINCREF(old_val); + Py_XINCREF(old_tb); + __Pyx_ErrRestore(old_exc, old_val, old_tb); + PyErr_PrintEx(1); + } + #if PY_MAJOR_VERSION < 3 + ctx = PyString_FromString(name); + #else + ctx = PyUnicode_FromString(name); + #endif + __Pyx_ErrRestore(old_exc, old_val, old_tb); + if (!ctx) { + PyErr_WriteUnraisable(Py_None); + } else { + PyErr_WriteUnraisable(ctx); + Py_DECREF(ctx); + } +#ifdef WITH_THREAD + if (nogil) + PyGILState_Release(state); +#endif +} + +/* PyErrExceptionMatches */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) { + PyObject *exc_type = tstate->curexc_type; + if (exc_type == err) return 1; + if (unlikely(!exc_type)) return 0; + return PyErr_GivenExceptionMatches(exc_type, err); +} +#endif + +/* CLineInTraceback */ + static int __Pyx_CLineForTraceback(int c_line) { +#ifdef CYTHON_CLINE_IN_TRACEBACK + return ((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0; +#else + PyObject **cython_runtime_dict; + PyObject *use_cline; + cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); + if (unlikely(!cython_runtime_dict)) { + PyObject *ptype, *pvalue, *ptraceback; + PyObject *use_cline_obj; + PyErr_Fetch(&ptype, &pvalue, &ptraceback); + use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); + if (use_cline_obj) { + use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; + Py_DECREF(use_cline_obj); + } else { + use_cline = NULL; + } + PyErr_Restore(ptype, pvalue, ptraceback); + } else { + use_cline = PyDict_GetItem(*_PyObject_GetDictPtr(__pyx_cython_runtime), __pyx_n_s_cline_in_traceback); + } + if (!use_cline) { + c_line = 0; + PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); + } + else if (PyObject_Not(use_cline) != 0) { + c_line = 0; + } + return c_line; +#endif +} + +/* CodeObjectCache */ + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + int start = 0, mid = 0, end = count - 1; + if (end >= 0 && code_line > entries[end].code_line) { + return count; + } + while (start < end) { + mid = start + (end - start) / 2; + if (code_line < entries[mid].code_line) { + end = mid; + } else if (code_line > entries[mid].code_line) { + start = mid + 1; + } else { + return mid; + } + } + if (code_line <= entries[mid].code_line) { + return mid; + } else { + return mid + 1; + } +} +static PyCodeObject *__pyx_find_code_object(int code_line) { + PyCodeObject* code_object; + int pos; + if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { + return NULL; + } + pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); + if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { + return NULL; + } + code_object = __pyx_code_cache.entries[pos].code_object; + Py_INCREF(code_object); + return code_object; +} +static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { + int pos, i; + __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; + if (unlikely(!code_line)) { + return; + } + if (unlikely(!entries)) { + entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); + if (likely(entries)) { + __pyx_code_cache.entries = entries; + __pyx_code_cache.max_count = 64; + __pyx_code_cache.count = 1; + entries[0].code_line = code_line; + entries[0].code_object = code_object; + Py_INCREF(code_object); + } + return; + } + pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); + if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { + PyCodeObject* tmp = entries[pos].code_object; + entries[pos].code_object = code_object; + Py_DECREF(tmp); + return; + } + if (__pyx_code_cache.count == __pyx_code_cache.max_count) { + int new_max = __pyx_code_cache.max_count + 64; + entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( + __pyx_code_cache.entries, (size_t)new_max*sizeof(__Pyx_CodeObjectCacheEntry)); + if (unlikely(!entries)) { + return; + } + __pyx_code_cache.entries = entries; + __pyx_code_cache.max_count = new_max; + } + for (i=__pyx_code_cache.count; i>pos; i--) { + entries[i] = entries[i-1]; + } + entries[pos].code_line = code_line; + entries[pos].code_object = code_object; + __pyx_code_cache.count++; + Py_INCREF(code_object); +} + +/* AddTraceback */ + #include "compile.h" +#include "frameobject.h" +#include "traceback.h" +static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( + const char *funcname, int c_line, + int py_line, const char *filename) { + PyCodeObject *py_code = 0; + PyObject *py_srcfile = 0; + PyObject *py_funcname = 0; + #if PY_MAJOR_VERSION < 3 + py_srcfile = PyString_FromString(filename); + #else + py_srcfile = PyUnicode_FromString(filename); + #endif + if (!py_srcfile) goto bad; + if (c_line) { + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); + #else + py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); + #endif + } + else { + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromString(funcname); + #else + py_funcname = PyUnicode_FromString(funcname); + #endif + } + if (!py_funcname) goto bad; + py_code = __Pyx_PyCode_New( + 0, + 0, + 0, + 0, + 0, + __pyx_empty_bytes, /*PyObject *code,*/ + __pyx_empty_tuple, /*PyObject *consts,*/ + __pyx_empty_tuple, /*PyObject *names,*/ + __pyx_empty_tuple, /*PyObject *varnames,*/ + __pyx_empty_tuple, /*PyObject *freevars,*/ + __pyx_empty_tuple, /*PyObject *cellvars,*/ + py_srcfile, /*PyObject *filename,*/ + py_funcname, /*PyObject *name,*/ + py_line, + __pyx_empty_bytes /*PyObject *lnotab*/ + ); + Py_DECREF(py_srcfile); + Py_DECREF(py_funcname); + return py_code; +bad: + Py_XDECREF(py_srcfile); + Py_XDECREF(py_funcname); + return NULL; +} +static void __Pyx_AddTraceback(const char *funcname, int c_line, + int py_line, const char *filename) { + PyCodeObject *py_code = 0; + PyFrameObject *py_frame = 0; + if (c_line) { + c_line = __Pyx_CLineForTraceback(c_line); + } + py_code = __pyx_find_code_object(c_line ? -c_line : py_line); + if (!py_code) { + py_code = __Pyx_CreateCodeObjectForTraceback( + funcname, c_line, py_line, filename); + if (!py_code) goto bad; + __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); + } + py_frame = PyFrame_New( + PyThreadState_GET(), /*PyThreadState *tstate,*/ + py_code, /*PyCodeObject *code,*/ + __pyx_d, /*PyObject *globals,*/ + 0 /*PyObject *locals*/ + ); + if (!py_frame) goto bad; + __Pyx_PyFrame_SetLineNumber(py_frame, py_line); + PyTraceBack_Here(py_frame); +bad: + Py_XDECREF(py_code); + Py_XDECREF(py_frame); +} + +#if PY_MAJOR_VERSION < 3 +static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) { + if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags); + if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags); + PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name); + return -1; +} +static void __Pyx_ReleaseBuffer(Py_buffer *view) { + PyObject *obj = view->obj; + if (!obj) return; + if (PyObject_CheckBuffer(obj)) { + PyBuffer_Release(view); + return; + } + if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) { __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view); return; } + Py_DECREF(obj); + view->obj = NULL; +} +#endif + + + /* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + const long neg_one = (long) -1, const_zero = (long) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(long) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(long) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(long) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(long), + little, !is_unsigned); + } +} + +/* CIntFromPyVerify */ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) +#define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ + __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) +#define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\ + {\ + func_type value = func_value;\ + if (sizeof(target_type) < sizeof(func_type)) {\ + if (unlikely(value != (func_type) (target_type) value)) {\ + func_type zero = 0;\ + if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\ + return (target_type) -1;\ + if (is_unsigned && unlikely(value < zero))\ + goto raise_neg_overflow;\ + else\ + goto raise_overflow;\ + }\ + }\ + return (target_type) value;\ + } + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { + const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(Py_intptr_t) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(Py_intptr_t) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(Py_intptr_t) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(Py_intptr_t) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(Py_intptr_t), + little, !is_unsigned); + } +} + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + const int neg_one = (int) -1, const_zero = (int) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(int) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(int) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(int) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(int), + little, !is_unsigned); + } +} + +/* Declarations */ + #if CYTHON_CCOMPLEX + #ifdef __cplusplus + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + return ::std::complex< float >(x, y); + } + #else + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + return x + y*(__pyx_t_float_complex)_Complex_I; + } + #endif +#else + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + __pyx_t_float_complex z; + z.real = x; + z.imag = y; + return z; + } +#endif + +/* Arithmetic */ + #if CYTHON_CCOMPLEX +#else + static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + return (a.real == b.real) && (a.imag == b.imag); + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real + b.real; + z.imag = a.imag + b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real - b.real; + z.imag = a.imag - b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real * b.real - a.imag * b.imag; + z.imag = a.real * b.imag + a.imag * b.real; + return z; + } + #if 1 + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + if (b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real); + } else if (fabsf(b.real) >= fabsf(b.imag)) { + if (b.real == 0 && b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.imag); + } else { + float r = b.imag / b.real; + float s = 1.0 / (b.real + b.imag * r); + return __pyx_t_float_complex_from_parts( + (a.real + a.imag * r) * s, (a.imag - a.real * r) * s); + } + } else { + float r = b.real / b.imag; + float s = 1.0 / (b.imag + b.real * r); + return __pyx_t_float_complex_from_parts( + (a.real * r + a.imag) * s, (a.imag * r - a.real) * s); + } + } + #else + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + if (b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real); + } else { + float denom = b.real * b.real + b.imag * b.imag; + return __pyx_t_float_complex_from_parts( + (a.real * b.real + a.imag * b.imag) / denom, + (a.imag * b.real - a.real * b.imag) / denom); + } + } + #endif + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex a) { + __pyx_t_float_complex z; + z.real = -a.real; + z.imag = -a.imag; + return z; + } + static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex a) { + return (a.real == 0) && (a.imag == 0); + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex a) { + __pyx_t_float_complex z; + z.real = a.real; + z.imag = -a.imag; + return z; + } + #if 1 + static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex z) { + #if !defined(HAVE_HYPOT) || defined(_MSC_VER) + return sqrtf(z.real*z.real + z.imag*z.imag); + #else + return hypotf(z.real, z.imag); + #endif + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + float r, lnr, theta, z_r, z_theta; + if (b.imag == 0 && b.real == (int)b.real) { + if (b.real < 0) { + float denom = a.real * a.real + a.imag * a.imag; + a.real = a.real / denom; + a.imag = -a.imag / denom; + b.real = -b.real; + } + switch ((int)b.real) { + case 0: + z.real = 1; + z.imag = 0; + return z; + case 1: + return a; + case 2: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(a, a); + case 3: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(z, a); + case 4: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(z, z); + } + } + if (a.imag == 0) { + if (a.real == 0) { + return a; + } else if (b.imag == 0) { + z.real = powf(a.real, b.real); + z.imag = 0; + return z; + } else if (a.real > 0) { + r = a.real; + theta = 0; + } else { + r = -a.real; + theta = atan2f(0, -1); + } + } else { + r = __Pyx_c_abs_float(a); + theta = atan2f(a.imag, a.real); + } + lnr = logf(r); + z_r = expf(lnr * b.real - theta * b.imag); + z_theta = theta * b.real + lnr * b.imag; + z.real = z_r * cosf(z_theta); + z.imag = z_r * sinf(z_theta); + return z; + } + #endif +#endif + +/* Declarations */ + #if CYTHON_CCOMPLEX + #ifdef __cplusplus + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + return ::std::complex< double >(x, y); + } + #else + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + return x + y*(__pyx_t_double_complex)_Complex_I; + } + #endif +#else + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + __pyx_t_double_complex z; + z.real = x; + z.imag = y; + return z; + } +#endif + +/* Arithmetic */ + #if CYTHON_CCOMPLEX +#else + static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + return (a.real == b.real) && (a.imag == b.imag); + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real + b.real; + z.imag = a.imag + b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real - b.real; + z.imag = a.imag - b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real * b.real - a.imag * b.imag; + z.imag = a.real * b.imag + a.imag * b.real; + return z; + } + #if 1 + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + if (b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real); + } else if (fabs(b.real) >= fabs(b.imag)) { + if (b.real == 0 && b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.imag); + } else { + double r = b.imag / b.real; + double s = 1.0 / (b.real + b.imag * r); + return __pyx_t_double_complex_from_parts( + (a.real + a.imag * r) * s, (a.imag - a.real * r) * s); + } + } else { + double r = b.real / b.imag; + double s = 1.0 / (b.imag + b.real * r); + return __pyx_t_double_complex_from_parts( + (a.real * r + a.imag) * s, (a.imag * r - a.real) * s); + } + } + #else + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + if (b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real); + } else { + double denom = b.real * b.real + b.imag * b.imag; + return __pyx_t_double_complex_from_parts( + (a.real * b.real + a.imag * b.imag) / denom, + (a.imag * b.real - a.real * b.imag) / denom); + } + } + #endif + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex a) { + __pyx_t_double_complex z; + z.real = -a.real; + z.imag = -a.imag; + return z; + } + static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex a) { + return (a.real == 0) && (a.imag == 0); + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex a) { + __pyx_t_double_complex z; + z.real = a.real; + z.imag = -a.imag; + return z; + } + #if 1 + static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex z) { + #if !defined(HAVE_HYPOT) || defined(_MSC_VER) + return sqrt(z.real*z.real + z.imag*z.imag); + #else + return hypot(z.real, z.imag); + #endif + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + double r, lnr, theta, z_r, z_theta; + if (b.imag == 0 && b.real == (int)b.real) { + if (b.real < 0) { + double denom = a.real * a.real + a.imag * a.imag; + a.real = a.real / denom; + a.imag = -a.imag / denom; + b.real = -b.real; + } + switch ((int)b.real) { + case 0: + z.real = 1; + z.imag = 0; + return z; + case 1: + return a; + case 2: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(a, a); + case 3: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(z, a); + case 4: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(z, z); + } + } + if (a.imag == 0) { + if (a.real == 0) { + return a; + } else if (b.imag == 0) { + z.real = pow(a.real, b.real); + z.imag = 0; + return z; + } else if (a.real > 0) { + r = a.real; + theta = 0; + } else { + r = -a.real; + theta = atan2(0, -1); + } + } else { + r = __Pyx_c_abs_double(a); + theta = atan2(a.imag, a.real); + } + lnr = log(r); + z_r = exp(lnr * b.real - theta * b.imag); + z_theta = theta * b.real + lnr * b.imag; + z.real = z_r * cos(z_theta); + z.imag = z_r * sin(z_theta); + return z; + } + #endif +#endif + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(enum NPY_TYPES) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(enum NPY_TYPES) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(enum NPY_TYPES) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(enum NPY_TYPES), + little, !is_unsigned); + } +} + +/* CIntFromPy */ + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + const int neg_one = (int) -1, const_zero = (int) 0; + const int is_unsigned = neg_one > const_zero; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_Check(x))) { + if (sizeof(int) < sizeof(long)) { + __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x)) + } else { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + goto raise_neg_overflow; + } + return (int) val; + } + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (int) 0; + case 1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0]) + case 2: + if (8 * sizeof(int) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) { + return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + case 3: + if (8 * sizeof(int) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) { + return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + case 4: + if (8 * sizeof(int) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) { + return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + } +#endif +#if CYTHON_COMPILING_IN_CPYTHON + if (unlikely(Py_SIZE(x) < 0)) { + goto raise_neg_overflow; + } +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (int) -1; + if (unlikely(result == 1)) + goto raise_neg_overflow; + } +#endif + if (sizeof(int) <= sizeof(unsigned long)) { + __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) +#endif + } + } else { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (int) 0; + case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0])) + case 1: __PYX_VERIFY_RETURN_INT(int, digit, +digits[0]) + case -2: + if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 2: + if (8 * sizeof(int) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case -3: + if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 3: + if (8 * sizeof(int) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case -4: + if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 4: + if (8 * sizeof(int) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { + return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + } +#endif + if (sizeof(int) <= sizeof(long)) { + __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x)) +#endif + } + } + { +#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) + PyErr_SetString(PyExc_RuntimeError, + "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); +#else + int val; + PyObject *v = __Pyx_PyNumber_IntOrLong(x); + #if PY_MAJOR_VERSION < 3 + if (likely(v) && !PyLong_Check(v)) { + PyObject *tmp = v; + v = PyNumber_Long(tmp); + Py_DECREF(tmp); + } + #endif + if (likely(v)) { + int one = 1; int is_little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&val; + int ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); + Py_DECREF(v); + if (likely(!ret)) + return val; + } +#endif + return (int) -1; + } + } else { + int val; + PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); + if (!tmp) return (int) -1; + val = __Pyx_PyInt_As_int(tmp); + Py_DECREF(tmp); + return val; + } +raise_overflow: + PyErr_SetString(PyExc_OverflowError, + "value too large to convert to int"); + return (int) -1; +raise_neg_overflow: + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to int"); + return (int) -1; +} + +/* CIntFromPy */ + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + const long neg_one = (long) -1, const_zero = (long) 0; + const int is_unsigned = neg_one > const_zero; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_Check(x))) { + if (sizeof(long) < sizeof(long)) { + __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x)) + } else { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + goto raise_neg_overflow; + } + return (long) val; + } + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (long) 0; + case 1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0]) + case 2: + if (8 * sizeof(long) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) { + return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + case 3: + if (8 * sizeof(long) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) { + return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + case 4: + if (8 * sizeof(long) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) { + return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + } +#endif +#if CYTHON_COMPILING_IN_CPYTHON + if (unlikely(Py_SIZE(x) < 0)) { + goto raise_neg_overflow; + } +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (long) -1; + if (unlikely(result == 1)) + goto raise_neg_overflow; + } +#endif + if (sizeof(long) <= sizeof(unsigned long)) { + __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) +#endif + } + } else { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (long) 0; + case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0])) + case 1: __PYX_VERIFY_RETURN_INT(long, digit, +digits[0]) + case -2: + if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 2: + if (8 * sizeof(long) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case -3: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 3: + if (8 * sizeof(long) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case -4: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 4: + if (8 * sizeof(long) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + } +#endif + if (sizeof(long) <= sizeof(long)) { + __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x)) +#endif + } + } + { +#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) + PyErr_SetString(PyExc_RuntimeError, + "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); +#else + long val; + PyObject *v = __Pyx_PyNumber_IntOrLong(x); + #if PY_MAJOR_VERSION < 3 + if (likely(v) && !PyLong_Check(v)) { + PyObject *tmp = v; + v = PyNumber_Long(tmp); + Py_DECREF(tmp); + } + #endif + if (likely(v)) { + int one = 1; int is_little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&val; + int ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); + Py_DECREF(v); + if (likely(!ret)) + return val; + } +#endif + return (long) -1; + } + } else { + long val; + PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); + if (!tmp) return (long) -1; + val = __Pyx_PyInt_As_long(tmp); + Py_DECREF(tmp); + return val; + } +raise_overflow: + PyErr_SetString(PyExc_OverflowError, + "value too large to convert to long"); + return (long) -1; +raise_neg_overflow: + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to long"); + return (long) -1; +} + +/* CheckBinaryVersion */ + static int __Pyx_check_binary_version(void) { + char ctversion[4], rtversion[4]; + PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); + PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); + if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) { + char message[200]; + PyOS_snprintf(message, sizeof(message), + "compiletime version %s of module '%.100s' " + "does not match runtime version %s", + ctversion, __Pyx_MODULE_NAME, rtversion); + return PyErr_WarnEx(NULL, message, 1); + } + return 0; +} + +/* ModuleImport */ + #ifndef __PYX_HAVE_RT_ImportModule +#define __PYX_HAVE_RT_ImportModule +static PyObject *__Pyx_ImportModule(const char *name) { + PyObject *py_name = 0; + PyObject *py_module = 0; + py_name = __Pyx_PyIdentifier_FromString(name); + if (!py_name) + goto bad; + py_module = PyImport_Import(py_name); + Py_DECREF(py_name); + return py_module; +bad: + Py_XDECREF(py_name); + return 0; +} +#endif + +/* TypeImport */ + #ifndef __PYX_HAVE_RT_ImportType +#define __PYX_HAVE_RT_ImportType +static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, + size_t size, int strict) +{ + PyObject *py_module = 0; + PyObject *result = 0; + PyObject *py_name = 0; + char warning[200]; + Py_ssize_t basicsize; +#ifdef Py_LIMITED_API + PyObject *py_basicsize; +#endif + py_module = __Pyx_ImportModule(module_name); + if (!py_module) + goto bad; + py_name = __Pyx_PyIdentifier_FromString(class_name); + if (!py_name) + goto bad; + result = PyObject_GetAttr(py_module, py_name); + Py_DECREF(py_name); + py_name = 0; + Py_DECREF(py_module); + py_module = 0; + if (!result) + goto bad; + if (!PyType_Check(result)) { + PyErr_Format(PyExc_TypeError, + "%.200s.%.200s is not a type object", + module_name, class_name); + goto bad; + } +#ifndef Py_LIMITED_API + basicsize = ((PyTypeObject *)result)->tp_basicsize; +#else + py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); + if (!py_basicsize) + goto bad; + basicsize = PyLong_AsSsize_t(py_basicsize); + Py_DECREF(py_basicsize); + py_basicsize = 0; + if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) + goto bad; +#endif + if (!strict && (size_t)basicsize > size) { + PyOS_snprintf(warning, sizeof(warning), + "%s.%s size changed, may indicate binary incompatibility. Expected %zd, got %zd", + module_name, class_name, basicsize, size); + if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; + } + else if ((size_t)basicsize != size) { + PyErr_Format(PyExc_ValueError, + "%.200s.%.200s has the wrong size, try recompiling. Expected %zd, got %zd", + module_name, class_name, basicsize, size); + goto bad; + } + return (PyTypeObject *)result; +bad: + Py_XDECREF(py_module); + Py_XDECREF(result); + return NULL; +} +#endif + +/* FunctionImport */ + #ifndef __PYX_HAVE_RT_ImportFunction +#define __PYX_HAVE_RT_ImportFunction +static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (**f)(void), const char *sig) { + PyObject *d = 0; + PyObject *cobj = 0; + union { + void (*fp)(void); + void *p; + } tmp; + d = PyObject_GetAttrString(module, (char *)"__pyx_capi__"); + if (!d) + goto bad; + cobj = PyDict_GetItemString(d, funcname); + if (!cobj) { + PyErr_Format(PyExc_ImportError, + "%.200s does not export expected C function %.200s", + PyModule_GetName(module), funcname); + goto bad; + } +#if PY_VERSION_HEX >= 0x02070000 + if (!PyCapsule_IsValid(cobj, sig)) { + PyErr_Format(PyExc_TypeError, + "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)", + PyModule_GetName(module), funcname, sig, PyCapsule_GetName(cobj)); + goto bad; + } + tmp.p = PyCapsule_GetPointer(cobj, sig); +#else + {const char *desc, *s1, *s2; + desc = (const char *)PyCObject_GetDesc(cobj); + if (!desc) + goto bad; + s1 = desc; s2 = sig; + while (*s1 != '\0' && *s1 == *s2) { s1++; s2++; } + if (*s1 != *s2) { + PyErr_Format(PyExc_TypeError, + "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)", + PyModule_GetName(module), funcname, sig, desc); + goto bad; + } + tmp.p = PyCObject_AsVoidPtr(cobj);} +#endif + *f = tmp.fp; + if (!(*f)) + goto bad; + Py_DECREF(d); + return 0; +bad: + Py_XDECREF(d); + return -1; +} +#endif + +/* InitStrings */ + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + while (t->p) { + #if PY_MAJOR_VERSION < 3 + if (t->is_unicode) { + *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); + } else if (t->intern) { + *t->p = PyString_InternFromString(t->s); + } else { + *t->p = PyString_FromStringAndSize(t->s, t->n - 1); + } + #else + if (t->is_unicode | t->is_str) { + if (t->intern) { + *t->p = PyUnicode_InternFromString(t->s); + } else if (t->encoding) { + *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); + } else { + *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); + } + } else { + *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); + } + #endif + if (!*t->p) + return -1; + if (PyObject_Hash(*t->p) == -1) + PyErr_Clear(); + ++t; + } + return 0; +} + +static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { + return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); +} +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { + Py_ssize_t ignore; + return __Pyx_PyObject_AsStringAndSize(o, &ignore); +} +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { +#if CYTHON_COMPILING_IN_CPYTHON && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) + if ( +#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + __Pyx_sys_getdefaultencoding_not_ascii && +#endif + PyUnicode_Check(o)) { +#if PY_VERSION_HEX < 0x03030000 + char* defenc_c; + PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); + if (!defenc) return NULL; + defenc_c = PyBytes_AS_STRING(defenc); +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + { + char* end = defenc_c + PyBytes_GET_SIZE(defenc); + char* c; + for (c = defenc_c; c < end; c++) { + if ((unsigned char) (*c) >= 128) { + PyUnicode_AsASCIIString(o); + return NULL; + } + } + } +#endif + *length = PyBytes_GET_SIZE(defenc); + return defenc_c; +#else + if (__Pyx_PyUnicode_READY(o) == -1) return NULL; +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + if (PyUnicode_IS_ASCII(o)) { + *length = PyUnicode_GET_LENGTH(o); + return PyUnicode_AsUTF8(o); + } else { + PyUnicode_AsASCIIString(o); + return NULL; + } +#else + return PyUnicode_AsUTF8AndSize(o, length); +#endif +#endif + } else +#endif +#if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE)) + if (PyByteArray_Check(o)) { + *length = PyByteArray_GET_SIZE(o); + return PyByteArray_AS_STRING(o); + } else +#endif + { + char* result; + int r = PyBytes_AsStringAndSize(o, &result, length); + if (unlikely(r < 0)) { + return NULL; + } else { + return result; + } + } +} +static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { + int is_true = x == Py_True; + if (is_true | (x == Py_False) | (x == Py_None)) return is_true; + else return PyObject_IsTrue(x); +} +static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) { +#if CYTHON_USE_TYPE_SLOTS + PyNumberMethods *m; +#endif + const char *name = NULL; + PyObject *res = NULL; +#if PY_MAJOR_VERSION < 3 + if (PyInt_Check(x) || PyLong_Check(x)) +#else + if (PyLong_Check(x)) +#endif + return __Pyx_NewRef(x); +#if CYTHON_USE_TYPE_SLOTS + m = Py_TYPE(x)->tp_as_number; + #if PY_MAJOR_VERSION < 3 + if (m && m->nb_int) { + name = "int"; + res = PyNumber_Int(x); + } + else if (m && m->nb_long) { + name = "long"; + res = PyNumber_Long(x); + } + #else + if (m && m->nb_int) { + name = "int"; + res = PyNumber_Long(x); + } + #endif +#else + res = PyNumber_Int(x); +#endif + if (res) { +#if PY_MAJOR_VERSION < 3 + if (!PyInt_Check(res) && !PyLong_Check(res)) { +#else + if (!PyLong_Check(res)) { +#endif + PyErr_Format(PyExc_TypeError, + "__%.4s__ returned non-%.4s (type %.200s)", + name, name, Py_TYPE(res)->tp_name); + Py_DECREF(res); + return NULL; + } + } + else if (!PyErr_Occurred()) { + PyErr_SetString(PyExc_TypeError, + "an integer is required"); + } + return res; +} +static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { + Py_ssize_t ival; + PyObject *x; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(b))) { + if (sizeof(Py_ssize_t) >= sizeof(long)) + return PyInt_AS_LONG(b); + else + return PyInt_AsSsize_t(x); + } +#endif + if (likely(PyLong_CheckExact(b))) { + #if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)b)->ob_digit; + const Py_ssize_t size = Py_SIZE(b); + if (likely(__Pyx_sst_abs(size) <= 1)) { + ival = likely(size) ? digits[0] : 0; + if (size == -1) ival = -ival; + return ival; + } else { + switch (size) { + case 2: + if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { + return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -2: + if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case 3: + if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { + return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -3: + if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case 4: + if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { + return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -4: + if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + } + } + #endif + return PyLong_AsSsize_t(b); + } + x = PyNumber_Index(b); + if (!x) return -1; + ival = PyInt_AsSsize_t(x); + Py_DECREF(x); + return ival; +} +static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { + return PyInt_FromSize_t(ival); +} + + +#endif /* Py_PYTHON_H */ From f89fa0a6dbb562794c613b2d095b9b9cdd29822c Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 23 Aug 2017 14:28:46 -0500 Subject: [PATCH 31/45] todo - learn how to spell install --- .travis.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.travis.yml b/.travis.yml index b0ad725..2db751e 100644 --- a/.travis.yml +++ b/.travis.yml @@ -6,7 +6,7 @@ python: install: - pip install --upgrade pip -- pip instal numpy +- pip install numpy - pip install .[test] script: pytest From 7dad24ac066e6ce6814d5dc6ccb2d6c548b6454f Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 23 Aug 2017 14:35:42 -0500 Subject: [PATCH 32/45] add xarray to test deps --- setup.py | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/setup.py b/setup.py index cf3882b..52c7041 100644 --- a/setup.py +++ b/setup.py @@ -82,8 +82,7 @@ 'cachetools>=2.0.0', 'click>=6.6', 'click-plugins>=1.0.3', - 'PyYAML>=3.12', - 'cython>=0.26'], + 'PyYAML>=3.12'], extras_require={ 'test': ['aniso8601>=1.1.0', @@ -92,8 +91,10 @@ 'pytest>=3.0.2', 'pytest-profiling>=1.1.1', 'gprof2dot>=2015.12.1', - 'pytest-watch>=4.1.0'], - 'dev': ['jupyter',], + 'pytest-watch>=4.1.0', + 'xarray>=0.9.6'], + 'dev': ['jupyter', + 'cython>=0.26'], }, setup_requires=['pytest-runner', 'pip', 'numpy'], From 03549312e01e394c81512213f9f9a7dc33b0783d Mon Sep 17 00:00:00 2001 From: clay austin Date: Thu, 24 Aug 2017 09:12:54 -0500 Subject: [PATCH 33/45] fix tests and setup.py --- .travis.yml | 1 + ccd/models/lasso.c | 1137 ++-- ccd/models/lasso.pxd | 15 + ccd/models/lasso.pyx | 8 - ccd/models/tmask.c | 776 +-- ccd/models/tmask.pyx | 4 +- ccd/procedures.c | 3723 ++++++----- ccd/procedures.pyx | 11 +- ccd/qa.py | 12 +- setup.py | 3 +- test/shared.py | 4 +- test/test_ccd_detect.py | 11 +- test/test_models.c | 7452 ++++++++++++++++++++++ test/{test_models.py => test_models.pyx} | 16 +- test/test_models_wrapper.py | 3 + test/test_qa.py | 20 +- 16 files changed, 10192 insertions(+), 3004 deletions(-) create mode 100644 ccd/models/lasso.pxd create mode 100644 test/test_models.c rename test/{test_models.py => test_models.pyx} (72%) create mode 100644 test/test_models_wrapper.py diff --git a/.travis.yml b/.travis.yml index 2db751e..2cf8117 100644 --- a/.travis.yml +++ b/.travis.yml @@ -8,6 +8,7 @@ install: - pip install --upgrade pip - pip install numpy - pip install .[test] +- python setup.py build_ext --inplace script: pytest diff --git a/ccd/models/lasso.c b/ccd/models/lasso.c index d71fa68..5e0304d 100644 --- a/ccd/models/lasso.c +++ b/ccd/models/lasso.c @@ -1,18 +1,14 @@ -/* Generated by Cython 0.26 */ +/* Generated by Cython 0.25.2 */ /* BEGIN: Cython Metadata { "distutils": { "depends": [ - "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h", - "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h" + "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h", + "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h" ], "include_dirs": [ - "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include" - ], - "name": "ccd.models.lasso", - "sources": [ - "ccd/models/lasso.pyx" + "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include" ] }, "module_name": "ccd.models.lasso" @@ -26,7 +22,7 @@ END: Cython Metadata */ #elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) #error Cython requires Python 2.6+ or Python 3.2+. #else -#define CYTHON_ABI "0_26" +#define CYTHON_ABI "0_25_2" #include #ifndef offsetof #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) @@ -48,7 +44,6 @@ END: Cython Metadata */ #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif -#define __PYX_COMMA , #ifndef HAVE_LONG_LONG #if PY_VERSION_HEX >= 0x03030000 || (PY_MAJOR_VERSION == 2 && PY_VERSION_HEX >= 0x02070000) #define HAVE_LONG_LONG @@ -201,20 +196,16 @@ END: Cython Metadata */ #ifndef Py_TPFLAGS_HAVE_FINALIZE #define Py_TPFLAGS_HAVE_FINALIZE 0 #endif -#if PY_VERSION_HEX < 0x030700A0 || !defined(METH_FASTCALL) - #ifndef METH_FASTCALL - #define METH_FASTCALL 0x80 - #endif - typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, Py_ssize_t nargs); - typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject **args, - Py_ssize_t nargs, PyObject *kwnames); +#ifndef METH_FASTCALL + #define METH_FASTCALL 0x80 + typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, + Py_ssize_t nargs, PyObject *kwnames); #else #define __Pyx_PyCFunctionFast _PyCFunctionFast - #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords #endif #if CYTHON_FAST_PYCCALL #define __Pyx_PyFastCFunction_Check(func)\ - ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))))) + ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST))))) #else #define __Pyx_PyFastCFunction_Check(func) 0 #endif @@ -341,12 +332,6 @@ END: Cython Metadata */ #else #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) #endif -#ifndef __has_attribute - #define __has_attribute(x) 0 -#endif -#ifndef __has_cpp_attribute - #define __has_cpp_attribute(x) 0 -#endif #if CYTHON_USE_ASYNC_SLOTS #if PY_VERSION_HEX >= 0x030500B1 #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods @@ -401,35 +386,6 @@ END: Cython Metadata */ # endif #endif #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) -#ifdef _MSC_VER - #ifndef _MSC_STDINT_H_ - #if _MSC_VER < 1300 - typedef unsigned char uint8_t; - typedef unsigned int uint32_t; - #else - typedef unsigned __int8 uint8_t; - typedef unsigned __int32 uint32_t; - #endif - #endif -#else - #include -#endif -#ifndef CYTHON_FALLTHROUGH - #ifdef __cplusplus - #if __has_cpp_attribute(fallthrough) - #define CYTHON_FALLTHROUGH [[fallthrough]] - #elif __has_cpp_attribute(clang::fallthrough) - #define CYTHON_FALLTHROUGH [[clang::fallthrough]] - #endif - #endif - #ifndef CYTHON_FALLTHROUGH - #if __has_attribute(fallthrough) || (defined(__GNUC__) && defined(__attribute__)) - #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) - #else - #define CYTHON_FALLTHROUGH - #endif - #endif -#endif #ifndef CYTHON_INLINE #if defined(__clang__) @@ -538,8 +494,8 @@ typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* enc #else #define __Pyx_sst_abs(value) ((value<0) ? -value : value) #endif -static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); -static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); +static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); +static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) #define __Pyx_PyBytes_FromString PyBytes_FromString @@ -552,11 +508,8 @@ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize #endif -#define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) @@ -678,12 +631,10 @@ static int __Pyx_init_sys_getdefaultencoding_params(void) { #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ */ -static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } static PyObject *__pyx_m; static PyObject *__pyx_d; static PyObject *__pyx_b; -static PyObject *__pyx_cython_runtime; static PyObject *__pyx_empty_tuple; static PyObject *__pyx_empty_bytes; static PyObject *__pyx_empty_unicode; @@ -759,7 +710,7 @@ typedef struct { } __Pyx_BufFmt_Context; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":725 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":725 * # in Cython to enable them only on the right systems. * * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< @@ -768,7 +719,7 @@ typedef struct { */ typedef npy_int8 __pyx_t_5numpy_int8_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":726 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":726 * * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< @@ -777,7 +728,7 @@ typedef npy_int8 __pyx_t_5numpy_int8_t; */ typedef npy_int16 __pyx_t_5numpy_int16_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":727 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":727 * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< @@ -786,7 +737,7 @@ typedef npy_int16 __pyx_t_5numpy_int16_t; */ typedef npy_int32 __pyx_t_5numpy_int32_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":728 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":728 * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< @@ -795,7 +746,7 @@ typedef npy_int32 __pyx_t_5numpy_int32_t; */ typedef npy_int64 __pyx_t_5numpy_int64_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":732 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":732 * #ctypedef npy_int128 int128_t * * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< @@ -804,7 +755,7 @@ typedef npy_int64 __pyx_t_5numpy_int64_t; */ typedef npy_uint8 __pyx_t_5numpy_uint8_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":733 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":733 * * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< @@ -813,7 +764,7 @@ typedef npy_uint8 __pyx_t_5numpy_uint8_t; */ typedef npy_uint16 __pyx_t_5numpy_uint16_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":734 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":734 * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< @@ -822,7 +773,7 @@ typedef npy_uint16 __pyx_t_5numpy_uint16_t; */ typedef npy_uint32 __pyx_t_5numpy_uint32_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":735 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":735 * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< @@ -831,7 +782,7 @@ typedef npy_uint32 __pyx_t_5numpy_uint32_t; */ typedef npy_uint64 __pyx_t_5numpy_uint64_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":739 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":739 * #ctypedef npy_uint128 uint128_t * * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< @@ -840,7 +791,7 @@ typedef npy_uint64 __pyx_t_5numpy_uint64_t; */ typedef npy_float32 __pyx_t_5numpy_float32_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":740 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":740 * * ctypedef npy_float32 float32_t * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< @@ -849,7 +800,7 @@ typedef npy_float32 __pyx_t_5numpy_float32_t; */ typedef npy_float64 __pyx_t_5numpy_float64_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":749 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":749 * # The int types are mapped a bit surprising -- * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t # <<<<<<<<<<<<<< @@ -858,7 +809,7 @@ typedef npy_float64 __pyx_t_5numpy_float64_t; */ typedef npy_long __pyx_t_5numpy_int_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":750 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":750 * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< @@ -867,7 +818,7 @@ typedef npy_long __pyx_t_5numpy_int_t; */ typedef npy_longlong __pyx_t_5numpy_long_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":751 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":751 * ctypedef npy_long int_t * ctypedef npy_longlong long_t * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< @@ -876,7 +827,7 @@ typedef npy_longlong __pyx_t_5numpy_long_t; */ typedef npy_longlong __pyx_t_5numpy_longlong_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":753 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":753 * ctypedef npy_longlong longlong_t * * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<< @@ -885,7 +836,7 @@ typedef npy_longlong __pyx_t_5numpy_longlong_t; */ typedef npy_ulong __pyx_t_5numpy_uint_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":754 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":754 * * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<< @@ -894,7 +845,7 @@ typedef npy_ulong __pyx_t_5numpy_uint_t; */ typedef npy_ulonglong __pyx_t_5numpy_ulong_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":755 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":755 * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<< @@ -903,7 +854,7 @@ typedef npy_ulonglong __pyx_t_5numpy_ulong_t; */ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":757 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":757 * ctypedef npy_ulonglong ulonglong_t * * ctypedef npy_intp intp_t # <<<<<<<<<<<<<< @@ -912,7 +863,7 @@ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; */ typedef npy_intp __pyx_t_5numpy_intp_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":758 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":758 * * ctypedef npy_intp intp_t * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<< @@ -921,7 +872,7 @@ typedef npy_intp __pyx_t_5numpy_intp_t; */ typedef npy_uintp __pyx_t_5numpy_uintp_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":760 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":760 * ctypedef npy_uintp uintp_t * * ctypedef npy_double float_t # <<<<<<<<<<<<<< @@ -930,7 +881,7 @@ typedef npy_uintp __pyx_t_5numpy_uintp_t; */ typedef npy_double __pyx_t_5numpy_float_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":761 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":761 * * ctypedef npy_double float_t * ctypedef npy_double double_t # <<<<<<<<<<<<<< @@ -939,7 +890,7 @@ typedef npy_double __pyx_t_5numpy_float_t; */ typedef npy_double __pyx_t_5numpy_double_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":762 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":762 * ctypedef npy_double float_t * ctypedef npy_double double_t * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<< @@ -948,8 +899,8 @@ typedef npy_double __pyx_t_5numpy_double_t; */ typedef npy_longdouble __pyx_t_5numpy_longdouble_t; -/* "ccd/models/lasso.pyx":10 - * from ccd.math_utils import calc_rmse +/* "ccd/models/lasso.pxd":6 + * from cpython cimport bool * * ctypedef np.float64_t STYPE_t # <<<<<<<<<<<<<< * ctypedef float FTYPE_t @@ -957,7 +908,7 @@ typedef npy_longdouble __pyx_t_5numpy_longdouble_t; */ typedef __pyx_t_5numpy_float64_t __pyx_t_3ccd_6models_5lasso_STYPE_t; -/* "ccd/models/lasso.pyx":11 +/* "ccd/models/lasso.pxd":7 * * ctypedef np.float64_t STYPE_t * ctypedef float FTYPE_t # <<<<<<<<<<<<<< @@ -966,7 +917,7 @@ typedef __pyx_t_5numpy_float64_t __pyx_t_3ccd_6models_5lasso_STYPE_t; */ typedef float __pyx_t_3ccd_6models_5lasso_FTYPE_t; -/* "ccd/models/lasso.pyx":12 +/* "ccd/models/lasso.pxd":8 * ctypedef np.float64_t STYPE_t * ctypedef float FTYPE_t * ctypedef int ITYPE_t # <<<<<<<<<<<<<< @@ -975,7 +926,7 @@ typedef float __pyx_t_3ccd_6models_5lasso_FTYPE_t; */ typedef int __pyx_t_3ccd_6models_5lasso_ITYPE_t; -/* "ccd/models/lasso.pyx":14 +/* "ccd/models/lasso.pxd":10 * ctypedef int ITYPE_t * ctypedef bool BTYPE_t * ctypedef np.long_t LTYPE_t # <<<<<<<<<<<<<< @@ -1010,7 +961,7 @@ static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(do /*--- Type declarations ---*/ -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":764 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":764 * ctypedef npy_longdouble longdouble_t * * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<< @@ -1019,7 +970,7 @@ static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(do */ typedef npy_cfloat __pyx_t_5numpy_cfloat_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":765 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":765 * * ctypedef npy_cfloat cfloat_t * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<< @@ -1028,7 +979,7 @@ typedef npy_cfloat __pyx_t_5numpy_cfloat_t; */ typedef npy_cdouble __pyx_t_5numpy_cdouble_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":766 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":766 * ctypedef npy_cfloat cfloat_t * ctypedef npy_cdouble cdouble_t * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<< @@ -1037,7 +988,7 @@ typedef npy_cdouble __pyx_t_5numpy_cdouble_t; */ typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":768 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":768 * ctypedef npy_clongdouble clongdouble_t * * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<< @@ -1046,7 +997,7 @@ typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; */ typedef npy_cdouble __pyx_t_5numpy_complex_t; -/* "ccd/models/lasso.pyx":13 +/* "ccd/models/lasso.pxd":9 * ctypedef float FTYPE_t * ctypedef int ITYPE_t * ctypedef bool BTYPE_t # <<<<<<<<<<<<<< @@ -1260,7 +1211,7 @@ typedef PyBoolObject *__pyx_t_3ccd_6models_5lasso_BTYPE_t; #else #define __Pyx_TraceDeclarations #define __Pyx_TraceFrameInit(codeobj) - #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if ((1)); else goto_error; + #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if (1); else goto_error; #define __Pyx_TraceException() #define __Pyx_TraceReturn(result, nogil) #endif @@ -1318,7 +1269,7 @@ typedef PyBoolObject *__pyx_t_3ccd_6models_5lasso_BTYPE_t; } #endif #else - #define __Pyx_TraceLine(lineno, nogil, goto_error) if ((1)); else goto_error; + #define __Pyx_TraceLine(lineno, nogil, goto_error) if (1); else goto_error; #endif /* BufferFormatCheck.proto */ @@ -1328,7 +1279,7 @@ static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info); static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts); static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, __Pyx_BufFmt_StackElem* stack, - __Pyx_TypeInfo* type); + __Pyx_TypeInfo* type); // PROTO /* PyObjectGetAttrStr.proto */ #if CYTHON_USE_TYPE_SLOTS @@ -1505,9 +1456,6 @@ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); /* ImportFrom.proto */ static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); -/* CLineInTraceback.proto */ -static int __Pyx_CLineForTraceback(int c_line); - /* CodeObjectCache.proto */ typedef struct { PyCodeObject* code_object; @@ -1670,6 +1618,9 @@ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); /* CheckBinaryVersion.proto */ static int __Pyx_check_binary_version(void); +/* FunctionExport.proto */ +static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig); + /* PyIdentifierFromString.proto */ #if !defined(__Pyx_PyIdentifier_FromString) #if PY_MAJOR_VERSION < 3 @@ -1830,7 +1781,6 @@ static const char __pyx_k_RuntimeError[] = "RuntimeError"; 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} - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":217 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":217 * * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): # <<<<<<<<<<<<<< @@ -3431,7 +3364,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = __pyx_t_2; __pyx_L6_bool_binop_done:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 * copy_shape = 0 * * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -3440,7 +3373,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":218 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":218 * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): * raise ValueError(u"ndarray is not C contiguous") # <<<<<<<<<<<<<< @@ -3453,7 +3386,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __PYX_ERR(1, 218, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 * copy_shape = 0 * * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -3462,7 +3395,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 * raise ValueError(u"ndarray is not C contiguous") * * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -3476,7 +3409,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P goto __pyx_L9_bool_binop_done; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":221 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":221 * * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): # <<<<<<<<<<<<<< @@ -3487,7 +3420,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = __pyx_t_2; __pyx_L9_bool_binop_done:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 * raise ValueError(u"ndarray is not C contiguous") * * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -3496,7 +3429,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":222 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":222 * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): * raise ValueError(u"ndarray is not Fortran contiguous") # <<<<<<<<<<<<<< @@ -3509,7 +3442,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __PYX_ERR(1, 222, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 * raise ValueError(u"ndarray is not C contiguous") * * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -3518,7 +3451,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":224 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":224 * raise ValueError(u"ndarray is not Fortran contiguous") * * info.buf = PyArray_DATA(self) # <<<<<<<<<<<<<< @@ -3527,7 +3460,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->buf = PyArray_DATA(__pyx_v_self); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":225 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":225 * * info.buf = PyArray_DATA(self) * info.ndim = ndim # <<<<<<<<<<<<<< @@ -3536,7 +3469,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->ndim = __pyx_v_ndim; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 * info.buf = PyArray_DATA(self) * info.ndim = ndim * if copy_shape: # <<<<<<<<<<<<<< @@ -3546,7 +3479,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = (__pyx_v_copy_shape != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":229 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":229 * # Allocate new buffer for strides and shape info. * # This is allocated as one block, strides first. * info.strides = stdlib.malloc(sizeof(Py_ssize_t) * ndim * 2) # <<<<<<<<<<<<<< @@ -3555,7 +3488,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->strides = ((Py_ssize_t *)malloc((((sizeof(Py_ssize_t)) * ((size_t)__pyx_v_ndim)) * 2))); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":230 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":230 * # This is allocated as one block, strides first. * info.strides = stdlib.malloc(sizeof(Py_ssize_t) * ndim * 2) * info.shape = info.strides + ndim # <<<<<<<<<<<<<< @@ -3564,7 +3497,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->shape = (__pyx_v_info->strides + __pyx_v_ndim); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":231 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":231 * info.strides = stdlib.malloc(sizeof(Py_ssize_t) * ndim * 2) * info.shape = info.strides + ndim * for i in range(ndim): # <<<<<<<<<<<<<< @@ -3575,7 +3508,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { __pyx_v_i = __pyx_t_5; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":232 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":232 * info.shape = info.strides + ndim * for i in range(ndim): * info.strides[i] = PyArray_STRIDES(self)[i] # <<<<<<<<<<<<<< @@ -3584,7 +3517,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ (__pyx_v_info->strides[__pyx_v_i]) = (PyArray_STRIDES(__pyx_v_self)[__pyx_v_i]); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":233 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":233 * for i in range(ndim): * info.strides[i] = PyArray_STRIDES(self)[i] * info.shape[i] = PyArray_DIMS(self)[i] # <<<<<<<<<<<<<< @@ -3594,7 +3527,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P (__pyx_v_info->shape[__pyx_v_i]) = (PyArray_DIMS(__pyx_v_self)[__pyx_v_i]); } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 * info.buf = PyArray_DATA(self) * info.ndim = ndim * if copy_shape: # <<<<<<<<<<<<<< @@ -3604,7 +3537,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P goto __pyx_L11; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":235 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":235 * info.shape[i] = PyArray_DIMS(self)[i] * else: * info.strides = PyArray_STRIDES(self) # <<<<<<<<<<<<<< @@ -3614,7 +3547,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P /*else*/ { __pyx_v_info->strides = ((Py_ssize_t *)PyArray_STRIDES(__pyx_v_self)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":236 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":236 * else: * info.strides = PyArray_STRIDES(self) * info.shape = PyArray_DIMS(self) # <<<<<<<<<<<<<< @@ -3625,7 +3558,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P } __pyx_L11:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":237 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":237 * info.strides = PyArray_STRIDES(self) * info.shape = PyArray_DIMS(self) * info.suboffsets = NULL # <<<<<<<<<<<<<< @@ -3634,7 +3567,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->suboffsets = NULL; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":238 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":238 * info.shape = PyArray_DIMS(self) * info.suboffsets = NULL * info.itemsize = PyArray_ITEMSIZE(self) # <<<<<<<<<<<<<< @@ -3643,7 +3576,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->itemsize = PyArray_ITEMSIZE(__pyx_v_self); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":239 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":239 * info.suboffsets = NULL * info.itemsize = PyArray_ITEMSIZE(self) * info.readonly = not PyArray_ISWRITEABLE(self) # <<<<<<<<<<<<<< @@ -3652,7 +3585,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->readonly = (!(PyArray_ISWRITEABLE(__pyx_v_self) != 0)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":242 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":242 * * cdef int t * cdef char* f = NULL # <<<<<<<<<<<<<< @@ -3661,7 +3594,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_f = NULL; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":243 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":243 * cdef int t * cdef char* f = NULL * cdef dtype descr = self.descr # <<<<<<<<<<<<<< @@ -3673,7 +3606,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_descr = ((PyArray_Descr *)__pyx_t_3); __pyx_t_3 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":246 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":246 * cdef int offset * * cdef bint hasfields = PyDataType_HASFIELDS(descr) # <<<<<<<<<<<<<< @@ -3682,7 +3615,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_hasfields = PyDataType_HASFIELDS(__pyx_v_descr); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 * cdef bint hasfields = PyDataType_HASFIELDS(descr) * * if not hasfields and not copy_shape: # <<<<<<<<<<<<<< @@ -3700,7 +3633,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_L15_bool_binop_done:; if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":250 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":250 * if not hasfields and not copy_shape: * # do not call releasebuffer * info.obj = None # <<<<<<<<<<<<<< @@ -3713,7 +3646,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = Py_None; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 * cdef bint hasfields = PyDataType_HASFIELDS(descr) * * if not hasfields and not copy_shape: # <<<<<<<<<<<<<< @@ -3723,7 +3656,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P goto __pyx_L14; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":253 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":253 * else: * # need to call releasebuffer * info.obj = self # <<<<<<<<<<<<<< @@ -3739,7 +3672,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P } __pyx_L14:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":255 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":255 * info.obj = self * * if not hasfields: # <<<<<<<<<<<<<< @@ -3749,7 +3682,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = ((!(__pyx_v_hasfields != 0)) != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":256 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":256 * * if not hasfields: * t = descr.type_num # <<<<<<<<<<<<<< @@ -3759,7 +3692,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_4 = __pyx_v_descr->type_num; __pyx_v_t = __pyx_t_4; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 * if not hasfields: * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -3779,7 +3712,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P } __pyx_L20_next_or:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":258 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":258 * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or * (descr.byteorder == c'<' and not little_endian)): # <<<<<<<<<<<<<< @@ -3796,7 +3729,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = __pyx_t_2; __pyx_L19_bool_binop_done:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 * if not hasfields: * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -3805,7 +3738,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":259 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":259 * if ((descr.byteorder == c'>' and little_endian) or * (descr.byteorder == c'<' and not little_endian)): * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< @@ -3818,7 +3751,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __PYX_ERR(1, 259, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 * if not hasfields: * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -3827,7 +3760,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":260 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":260 * (descr.byteorder == c'<' and not little_endian)): * raise ValueError(u"Non-native byte order not supported") * if t == NPY_BYTE: f = "b" # <<<<<<<<<<<<<< @@ -3839,7 +3772,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"b"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":261 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":261 * raise ValueError(u"Non-native byte order not supported") * if t == NPY_BYTE: f = "b" * elif t == NPY_UBYTE: f = "B" # <<<<<<<<<<<<<< @@ -3850,7 +3783,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"B"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":262 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":262 * if t == NPY_BYTE: f = "b" * elif t == NPY_UBYTE: f = "B" * elif t == NPY_SHORT: f = "h" # <<<<<<<<<<<<<< @@ -3861,7 +3794,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"h"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":263 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":263 * elif t == NPY_UBYTE: f = "B" * elif t == NPY_SHORT: f = "h" * elif t == NPY_USHORT: f = "H" # <<<<<<<<<<<<<< @@ -3872,7 +3805,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"H"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":264 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":264 * elif t == NPY_SHORT: f = "h" * elif t == NPY_USHORT: f = "H" * elif t == NPY_INT: f = "i" # <<<<<<<<<<<<<< @@ -3883,7 +3816,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"i"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":265 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":265 * elif t == NPY_USHORT: f = "H" * elif t == NPY_INT: f = "i" * elif t == NPY_UINT: f = "I" # <<<<<<<<<<<<<< @@ -3894,7 +3827,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"I"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":266 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":266 * elif t == NPY_INT: f = "i" * elif t == NPY_UINT: f = "I" * elif t == NPY_LONG: f = "l" # <<<<<<<<<<<<<< @@ -3905,7 +3838,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"l"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":267 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":267 * elif t == NPY_UINT: f = "I" * elif t == NPY_LONG: f = "l" * elif t == NPY_ULONG: f = "L" # <<<<<<<<<<<<<< @@ -3916,7 +3849,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"L"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":268 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":268 * elif t == NPY_LONG: f = "l" * elif t == NPY_ULONG: f = "L" * elif t == NPY_LONGLONG: f = "q" # <<<<<<<<<<<<<< @@ -3927,7 +3860,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"q"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":269 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":269 * elif t == NPY_ULONG: f = "L" * elif t == NPY_LONGLONG: f = "q" * elif t == NPY_ULONGLONG: f = "Q" # <<<<<<<<<<<<<< @@ -3938,7 +3871,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Q"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":270 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":270 * elif t == NPY_LONGLONG: f = "q" * elif t == NPY_ULONGLONG: f = "Q" * elif t == NPY_FLOAT: f = "f" # <<<<<<<<<<<<<< @@ -3949,7 +3882,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"f"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":271 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":271 * elif t == NPY_ULONGLONG: f = "Q" * elif t == NPY_FLOAT: f = "f" * elif t == NPY_DOUBLE: f = "d" # <<<<<<<<<<<<<< @@ -3960,7 +3893,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"d"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":272 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":272 * elif t == NPY_FLOAT: f = "f" * elif t == NPY_DOUBLE: f = "d" * elif t == NPY_LONGDOUBLE: f = "g" # <<<<<<<<<<<<<< @@ -3971,7 +3904,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"g"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":273 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":273 * elif t == NPY_DOUBLE: f = "d" * elif t == NPY_LONGDOUBLE: f = "g" * elif t == NPY_CFLOAT: f = "Zf" # <<<<<<<<<<<<<< @@ -3982,7 +3915,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Zf"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":274 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":274 * elif t == NPY_LONGDOUBLE: f = "g" * elif t == NPY_CFLOAT: f = "Zf" * elif t == NPY_CDOUBLE: f = "Zd" # <<<<<<<<<<<<<< @@ -3993,7 +3926,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Zd"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":275 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":275 * elif t == NPY_CFLOAT: f = "Zf" * elif t == NPY_CDOUBLE: f = "Zd" * elif t == NPY_CLONGDOUBLE: f = "Zg" # <<<<<<<<<<<<<< @@ -4004,7 +3937,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Zg"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":276 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":276 * elif t == NPY_CDOUBLE: f = "Zd" * elif t == NPY_CLONGDOUBLE: f = "Zg" * elif t == NPY_OBJECT: f = "O" # <<<<<<<<<<<<<< @@ -4016,7 +3949,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P break; default: - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":278 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":278 * elif t == NPY_OBJECT: f = "O" * else: * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) # <<<<<<<<<<<<<< @@ -4042,7 +3975,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P break; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":279 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":279 * else: * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) * info.format = f # <<<<<<<<<<<<<< @@ -4051,7 +3984,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->format = __pyx_v_f; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":280 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":280 * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) * info.format = f * return # <<<<<<<<<<<<<< @@ -4061,7 +3994,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_r = 0; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":255 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":255 * info.obj = self * * if not hasfields: # <<<<<<<<<<<<<< @@ -4070,7 +4003,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":282 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":282 * return * else: * info.format = stdlib.malloc(_buffer_format_string_len) # <<<<<<<<<<<<<< @@ -4080,7 +4013,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P /*else*/ { __pyx_v_info->format = ((char *)malloc(0xFF)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":283 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":283 * else: * info.format = stdlib.malloc(_buffer_format_string_len) * info.format[0] = c'^' # Native data types, manual alignment # <<<<<<<<<<<<<< @@ -4089,7 +4022,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ (__pyx_v_info->format[0]) = '^'; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":284 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":284 * info.format = stdlib.malloc(_buffer_format_string_len) * info.format[0] = c'^' # Native data types, manual alignment * offset = 0 # <<<<<<<<<<<<<< @@ -4098,7 +4031,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_offset = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":285 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":285 * info.format[0] = c'^' # Native data types, manual alignment * offset = 0 * f = _util_dtypestring(descr, info.format + 1, # <<<<<<<<<<<<<< @@ -4108,7 +4041,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_7 = __pyx_f_5numpy__util_dtypestring(__pyx_v_descr, (__pyx_v_info->format + 1), (__pyx_v_info->format + 0xFF), (&__pyx_v_offset)); if (unlikely(__pyx_t_7 == NULL)) __PYX_ERR(1, 285, __pyx_L1_error) __pyx_v_f = __pyx_t_7; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":288 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":288 * info.format + _buffer_format_string_len, * &offset) * f[0] = c'\0' # Terminate format string # <<<<<<<<<<<<<< @@ -4118,7 +4051,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P (__pyx_v_f[0]) = '\x00'; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":197 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":197 * # experimental exception made for __getbuffer__ and __releasebuffer__ * # -- the details of this may change. * def __getbuffer__(ndarray self, Py_buffer* info, int flags): # <<<<<<<<<<<<<< @@ -4151,7 +4084,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":290 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":290 * f[0] = c'\0' # Terminate format string * * def __releasebuffer__(ndarray self, Py_buffer* info): # <<<<<<<<<<<<<< @@ -4177,7 +4110,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s __Pyx_RefNannySetupContext("__releasebuffer__", 0); __Pyx_TraceCall("__releasebuffer__", __pyx_f[1], 290, 0, __PYX_ERR(1, 290, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":291 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":291 * * def __releasebuffer__(ndarray self, Py_buffer* info): * if PyArray_HASFIELDS(self): # <<<<<<<<<<<<<< @@ -4187,7 +4120,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s __pyx_t_1 = (PyArray_HASFIELDS(__pyx_v_self) != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":292 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":292 * def __releasebuffer__(ndarray self, Py_buffer* info): * if PyArray_HASFIELDS(self): * stdlib.free(info.format) # <<<<<<<<<<<<<< @@ -4196,7 +4129,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s */ free(__pyx_v_info->format); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":291 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":291 * * def __releasebuffer__(ndarray self, Py_buffer* info): * if PyArray_HASFIELDS(self): # <<<<<<<<<<<<<< @@ -4205,7 +4138,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":293 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":293 * if PyArray_HASFIELDS(self): * stdlib.free(info.format) * if sizeof(npy_intp) != sizeof(Py_ssize_t): # <<<<<<<<<<<<<< @@ -4215,7 +4148,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s __pyx_t_1 = (((sizeof(npy_intp)) != (sizeof(Py_ssize_t))) != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":294 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":294 * stdlib.free(info.format) * if sizeof(npy_intp) != sizeof(Py_ssize_t): * stdlib.free(info.strides) # <<<<<<<<<<<<<< @@ -4224,7 +4157,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s */ free(__pyx_v_info->strides); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":293 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":293 * if PyArray_HASFIELDS(self): * stdlib.free(info.format) * if sizeof(npy_intp) != sizeof(Py_ssize_t): # <<<<<<<<<<<<<< @@ -4233,7 +4166,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":290 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":290 * f[0] = c'\0' # Terminate format string * * def __releasebuffer__(ndarray self, Py_buffer* info): # <<<<<<<<<<<<<< @@ -4244,13 +4177,13 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s /* function exit code */ goto __pyx_L0; __pyx_L1_error:; - __Pyx_WriteUnraisable("numpy.ndarray.__releasebuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0); + __Pyx_WriteUnraisable("numpy.ndarray.__releasebuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename, 0, 0); __pyx_L0:; __Pyx_TraceReturn(Py_None, 0); __Pyx_RefNannyFinishContext(); } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":770 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":770 * ctypedef npy_cdouble complex_t * * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<< @@ -4266,7 +4199,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__ __Pyx_RefNannySetupContext("PyArray_MultiIterNew1", 0); __Pyx_TraceCall("PyArray_MultiIterNew1", __pyx_f[1], 770, 0, __PYX_ERR(1, 770, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":771 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":771 * * cdef inline object PyArray_MultiIterNew1(a): * return PyArray_MultiIterNew(1, a) # <<<<<<<<<<<<<< @@ -4280,7 +4213,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__ __pyx_t_1 = 0; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":770 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":770 * ctypedef npy_cdouble complex_t * * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<< @@ -4300,7 +4233,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__ return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":773 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":773 * return PyArray_MultiIterNew(1, a) * * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<< @@ -4316,7 +4249,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__ __Pyx_RefNannySetupContext("PyArray_MultiIterNew2", 0); __Pyx_TraceCall("PyArray_MultiIterNew2", __pyx_f[1], 773, 0, __PYX_ERR(1, 773, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":774 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":774 * * cdef inline object PyArray_MultiIterNew2(a, b): * return PyArray_MultiIterNew(2, a, b) # <<<<<<<<<<<<<< @@ -4330,7 +4263,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__ __pyx_t_1 = 0; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":773 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":773 * return PyArray_MultiIterNew(1, a) * * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<< @@ -4350,7 +4283,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__ return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":776 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":776 * return PyArray_MultiIterNew(2, a, b) * * cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<< @@ -4366,7 +4299,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__ __Pyx_RefNannySetupContext("PyArray_MultiIterNew3", 0); __Pyx_TraceCall("PyArray_MultiIterNew3", __pyx_f[1], 776, 0, __PYX_ERR(1, 776, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":777 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":777 * * cdef inline object PyArray_MultiIterNew3(a, b, c): * return PyArray_MultiIterNew(3, a, b, c) # <<<<<<<<<<<<<< @@ -4380,7 +4313,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__ __pyx_t_1 = 0; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":776 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":776 * return PyArray_MultiIterNew(2, a, b) * * cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<< @@ -4400,7 +4333,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__ return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":779 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":779 * return PyArray_MultiIterNew(3, a, b, c) * * cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<< @@ -4416,7 +4349,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__ __Pyx_RefNannySetupContext("PyArray_MultiIterNew4", 0); __Pyx_TraceCall("PyArray_MultiIterNew4", __pyx_f[1], 779, 0, __PYX_ERR(1, 779, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":780 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":780 * * cdef inline object PyArray_MultiIterNew4(a, b, c, d): * return PyArray_MultiIterNew(4, a, b, c, d) # <<<<<<<<<<<<<< @@ -4430,7 +4363,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__ __pyx_t_1 = 0; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":779 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":779 * return PyArray_MultiIterNew(3, a, b, c) * * cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<< @@ -4450,7 +4383,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__ return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":782 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":782 * return PyArray_MultiIterNew(4, a, b, c, d) * * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<< @@ -4466,7 +4399,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__ __Pyx_RefNannySetupContext("PyArray_MultiIterNew5", 0); 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} -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":785 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":785 * return PyArray_MultiIterNew(5, a, b, c, d, e) * * cdef inline char* _util_dtypestring(dtype descr, char* f, char* end, int* offset) except NULL: # <<<<<<<<<<<<<< @@ -4531,7 +4464,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_RefNannySetupContext("_util_dtypestring", 0); __Pyx_TraceCall("_util_dtypestring", __pyx_f[1], 785, 0, __PYX_ERR(1, 785, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":790 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":790 * * cdef dtype child * cdef int endian_detector = 1 # <<<<<<<<<<<<<< @@ -4540,7 +4473,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ __pyx_v_endian_detector = 1; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":791 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":791 * cdef dtype child * cdef int endian_detector = 1 * cdef bint little_endian = ((&endian_detector)[0] != 0) # <<<<<<<<<<<<<< @@ -4549,7 +4482,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ __pyx_v_little_endian = ((((char *)(&__pyx_v_endian_detector))[0]) != 0); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":794 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":794 * cdef tuple fields * * for childname in descr.names: # <<<<<<<<<<<<<< @@ -4572,7 +4505,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_XDECREF_SET(__pyx_v_childname, __pyx_t_3); __pyx_t_3 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":795 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":795 * * for childname in descr.names: * fields = descr.fields[childname] # <<<<<<<<<<<<<< @@ -4589,7 +4522,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_XDECREF_SET(__pyx_v_fields, ((PyObject*)__pyx_t_3)); __pyx_t_3 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":796 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":796 * for childname in descr.names: * fields = descr.fields[childname] * child, new_offset = fields # <<<<<<<<<<<<<< @@ -4628,7 +4561,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_XDECREF_SET(__pyx_v_new_offset, __pyx_t_4); __pyx_t_4 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":798 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":798 * child, new_offset = fields * * if (end - f) - (new_offset - offset[0]) < 15: # <<<<<<<<<<<<<< @@ -4645,7 +4578,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_t_6 = ((((__pyx_v_end - __pyx_v_f) - ((int)__pyx_t_5)) < 15) != 0); if (__pyx_t_6) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":799 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":799 * * if (end - f) - (new_offset - offset[0]) < 15: * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") # <<<<<<<<<<<<<< @@ -4658,7 +4591,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __PYX_ERR(1, 799, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":798 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":798 * child, new_offset = fields * * if (end - f) - (new_offset - offset[0]) < 15: # <<<<<<<<<<<<<< @@ -4667,7 +4600,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") * * if ((child.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -4687,7 +4620,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx } __pyx_L8_next_or:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":802 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":802 * * if ((child.byteorder == c'>' and little_endian) or * (child.byteorder == c'<' and not little_endian)): # <<<<<<<<<<<<<< @@ -4704,7 +4637,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_t_6 = __pyx_t_7; __pyx_L7_bool_binop_done:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") * * if ((child.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -4713,7 +4646,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ if (__pyx_t_6) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":803 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":803 * if ((child.byteorder == c'>' and little_endian) or * (child.byteorder == c'<' and not little_endian)): * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< @@ -4726,7 +4659,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __PYX_ERR(1, 803, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") * * if ((child.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -4735,7 +4668,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":813 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":813 * * # Output padding bytes * while offset[0] < new_offset: # <<<<<<<<<<<<<< @@ -4751,7 +4684,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; if (!__pyx_t_6) break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":814 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":814 * # Output padding bytes * while offset[0] < new_offset: * f[0] = 120 # "x"; pad byte # <<<<<<<<<<<<<< @@ -4760,7 +4693,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ (__pyx_v_f[0]) = 0x78; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":815 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":815 * while offset[0] < new_offset: * f[0] = 120 # "x"; pad byte * f += 1 # <<<<<<<<<<<<<< @@ -4769,7 +4702,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ __pyx_v_f = (__pyx_v_f + 1); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":816 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":816 * f[0] = 120 # "x"; pad byte * f += 1 * offset[0] += 1 # <<<<<<<<<<<<<< @@ -4780,7 +4713,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + 1); } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":818 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":818 * offset[0] += 1 * * offset[0] += child.itemsize # <<<<<<<<<<<<<< @@ -4790,7 +4723,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_t_8 = 0; (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + __pyx_v_child->elsize); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":820 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":820 * offset[0] += child.itemsize * * if not PyDataType_HASFIELDS(child): # <<<<<<<<<<<<<< @@ -4800,7 +4733,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_t_6 = ((!(PyDataType_HASFIELDS(__pyx_v_child) != 0)) != 0); if (__pyx_t_6) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":821 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":821 * * if not PyDataType_HASFIELDS(child): * t = child.type_num # <<<<<<<<<<<<<< @@ -4812,7 +4745,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_XDECREF_SET(__pyx_v_t, __pyx_t_4); __pyx_t_4 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":822 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":822 * if not PyDataType_HASFIELDS(child): * t = child.type_num * if end - f < 5: # <<<<<<<<<<<<<< @@ -4822,7 +4755,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_t_6 = (((__pyx_v_end - __pyx_v_f) < 5) != 0); if (__pyx_t_6) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":823 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":823 * t = child.type_num * if end - f < 5: * raise RuntimeError(u"Format string allocated too short.") # <<<<<<<<<<<<<< @@ -4835,7 +4768,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; __PYX_ERR(1, 823, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":822 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":822 * if not PyDataType_HASFIELDS(child): * t = child.type_num * if end - f < 5: # <<<<<<<<<<<<<< @@ -4844,7 +4777,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":826 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":826 * * # Until ticket #99 is fixed, use integers to avoid warnings * if t == NPY_BYTE: f[0] = 98 #"b" # <<<<<<<<<<<<<< @@ -4862,7 +4795,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":827 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":827 * # Until ticket #99 is fixed, use integers to avoid warnings * if t == NPY_BYTE: f[0] = 98 #"b" * elif t == NPY_UBYTE: f[0] = 66 #"B" # <<<<<<<<<<<<<< @@ -4880,7 +4813,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":828 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":828 * if t == NPY_BYTE: f[0] = 98 #"b" * elif t == NPY_UBYTE: f[0] = 66 #"B" * elif t == NPY_SHORT: f[0] = 104 #"h" # <<<<<<<<<<<<<< @@ -4898,7 +4831,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":829 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":829 * elif t == NPY_UBYTE: f[0] = 66 #"B" * elif t == NPY_SHORT: f[0] = 104 #"h" * elif t == NPY_USHORT: f[0] = 72 #"H" # <<<<<<<<<<<<<< @@ -4916,7 +4849,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":830 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":830 * elif t == NPY_SHORT: f[0] = 104 #"h" * elif t == NPY_USHORT: f[0] = 72 #"H" * elif t == NPY_INT: f[0] = 105 #"i" # <<<<<<<<<<<<<< @@ -4934,7 +4867,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":831 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":831 * elif t == NPY_USHORT: f[0] = 72 #"H" * elif t == NPY_INT: f[0] = 105 #"i" * elif t == NPY_UINT: f[0] = 73 #"I" # <<<<<<<<<<<<<< @@ -4952,7 +4885,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":832 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":832 * elif t == NPY_INT: f[0] = 105 #"i" * elif t == NPY_UINT: f[0] = 73 #"I" * elif t == NPY_LONG: f[0] = 108 #"l" # <<<<<<<<<<<<<< @@ -4970,7 +4903,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":833 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":833 * elif t == NPY_UINT: f[0] = 73 #"I" * elif t == NPY_LONG: f[0] = 108 #"l" * elif t == NPY_ULONG: f[0] = 76 #"L" # <<<<<<<<<<<<<< @@ -4988,7 +4921,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":834 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":834 * elif t == NPY_LONG: f[0] = 108 #"l" * elif t == NPY_ULONG: f[0] = 76 #"L" * elif t == NPY_LONGLONG: f[0] = 113 #"q" # <<<<<<<<<<<<<< @@ -5006,7 +4939,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":835 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":835 * elif t == NPY_ULONG: f[0] = 76 #"L" * elif t == NPY_LONGLONG: f[0] = 113 #"q" * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" # <<<<<<<<<<<<<< @@ -5024,7 +4957,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":836 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":836 * elif t == NPY_LONGLONG: f[0] = 113 #"q" * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" * elif t == NPY_FLOAT: f[0] = 102 #"f" # <<<<<<<<<<<<<< @@ -5042,7 +4975,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":837 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":837 * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" * elif t == NPY_FLOAT: f[0] = 102 #"f" * elif t == NPY_DOUBLE: f[0] = 100 #"d" # <<<<<<<<<<<<<< @@ -5060,7 +4993,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":838 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":838 * elif t == NPY_FLOAT: f[0] = 102 #"f" * elif t == NPY_DOUBLE: f[0] = 100 #"d" * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" # <<<<<<<<<<<<<< @@ -5078,7 +5011,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":839 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":839 * elif t == NPY_DOUBLE: f[0] = 100 #"d" * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf # <<<<<<<<<<<<<< @@ -5098,7 +5031,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":840 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":840 * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd # <<<<<<<<<<<<<< @@ -5118,7 +5051,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":841 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":841 * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd * elif t == NPY_CLONGDOUBLE: f[0] = 90; f[1] = 103; f += 1 # Zg # <<<<<<<<<<<<<< @@ -5138,7 +5071,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":842 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":842 * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd * elif t == NPY_CLONGDOUBLE: f[0] = 90; f[1] = 103; f += 1 # Zg * elif t == NPY_OBJECT: f[0] = 79 #"O" # <<<<<<<<<<<<<< @@ -5156,7 +5089,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":844 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":844 * elif t == NPY_OBJECT: f[0] = 79 #"O" * else: * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) # <<<<<<<<<<<<<< @@ -5180,7 +5113,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx } __pyx_L15:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":845 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":845 * else: * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) * f += 1 # <<<<<<<<<<<<<< @@ -5189,7 +5122,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ __pyx_v_f = (__pyx_v_f + 1); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":820 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":820 * offset[0] += child.itemsize * * if not PyDataType_HASFIELDS(child): # <<<<<<<<<<<<<< @@ -5199,7 +5132,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L13; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":849 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":849 * # Cython ignores struct boundary information ("T{...}"), * # so don't output it * f = _util_dtypestring(child, f, end, offset) # <<<<<<<<<<<<<< @@ -5212,7 +5145,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx } __pyx_L13:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":794 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":794 * cdef tuple fields * * for childname in descr.names: # <<<<<<<<<<<<<< @@ -5222,7 +5155,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx } __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":850 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":850 * # so don't output it * f = _util_dtypestring(child, f, end, offset) * return f # <<<<<<<<<<<<<< @@ -5232,7 +5165,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_r = __pyx_v_f; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":785 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":785 * return PyArray_MultiIterNew(5, a, b, c, d, e) * * cdef inline char* _util_dtypestring(dtype descr, char* f, char* end, int* offset) except NULL: # <<<<<<<<<<<<<< @@ -5258,7 +5191,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":966 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":966 * * * cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<< @@ -5275,7 +5208,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a __Pyx_RefNannySetupContext("set_array_base", 0); __Pyx_TraceCall("set_array_base", __pyx_f[1], 966, 0, __PYX_ERR(1, 966, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":968 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":968 * cdef inline void set_array_base(ndarray arr, object base): * cdef PyObject* baseptr * if base is None: # <<<<<<<<<<<<<< @@ -5286,7 +5219,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a __pyx_t_2 = (__pyx_t_1 != 0); if (__pyx_t_2) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":969 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":969 * cdef PyObject* baseptr * if base is None: * baseptr = NULL # <<<<<<<<<<<<<< @@ -5295,7 +5228,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a */ __pyx_v_baseptr = NULL; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":968 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":968 * cdef inline void set_array_base(ndarray arr, object base): * cdef PyObject* baseptr * if base is None: # <<<<<<<<<<<<<< @@ -5305,7 +5238,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a goto __pyx_L3; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":971 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":971 * baseptr = NULL * else: * Py_INCREF(base) # important to do this before decref below! # <<<<<<<<<<<<<< @@ -5315,7 +5248,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a /*else*/ { Py_INCREF(__pyx_v_base); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":972 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":972 * else: * Py_INCREF(base) # important to do this before decref below! * baseptr = base # <<<<<<<<<<<<<< @@ -5326,7 +5259,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a } __pyx_L3:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":973 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":973 * Py_INCREF(base) # important to do this before decref below! * baseptr = base * Py_XDECREF(arr.base) # <<<<<<<<<<<<<< @@ -5335,7 +5268,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a */ Py_XDECREF(__pyx_v_arr->base); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":974 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":974 * baseptr = base * Py_XDECREF(arr.base) * arr.base = baseptr # <<<<<<<<<<<<<< @@ -5344,7 +5277,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a */ __pyx_v_arr->base = __pyx_v_baseptr; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":966 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":966 * * * cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<< @@ -5355,13 +5288,13 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a /* function exit code */ goto __pyx_L0; __pyx_L1_error:; - __Pyx_WriteUnraisable("numpy.set_array_base", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0); + __Pyx_WriteUnraisable("numpy.set_array_base", __pyx_clineno, __pyx_lineno, __pyx_filename, 0, 0); __pyx_L0:; __Pyx_TraceReturn(Py_None, 0); __Pyx_RefNannyFinishContext(); } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":976 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":976 * arr.base = baseptr * * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<< @@ -5377,7 +5310,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py __Pyx_RefNannySetupContext("get_array_base", 0); __Pyx_TraceCall("get_array_base", __pyx_f[1], 976, 0, __PYX_ERR(1, 976, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":977 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":977 * * cdef inline object get_array_base(ndarray arr): * if arr.base is NULL: # <<<<<<<<<<<<<< @@ -5387,7 +5320,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py __pyx_t_1 = ((__pyx_v_arr->base == NULL) != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":978 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":978 * cdef inline object get_array_base(ndarray arr): * if arr.base is NULL: * return None # <<<<<<<<<<<<<< @@ -5399,7 +5332,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py __pyx_r = Py_None; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":977 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":977 * * cdef inline object get_array_base(ndarray arr): * if arr.base is NULL: # <<<<<<<<<<<<<< @@ -5408,7 +5341,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":980 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":980 * return None * else: * return arr.base # <<<<<<<<<<<<<< @@ -5422,7 +5355,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py goto __pyx_L0; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":976 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":976 * arr.base = baseptr * * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<< @@ -5441,7 +5374,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":985 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":985 * # Versions of the import_* functions which are more suitable for * # Cython code. * cdef inline int import_array() except -1: # <<<<<<<<<<<<<< @@ -5464,7 +5397,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_RefNannySetupContext("import_array", 0); __Pyx_TraceCall("import_array", __pyx_f[1], 985, 0, __PYX_ERR(1, 985, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 * # Cython code. * cdef inline int import_array() except -1: * try: # <<<<<<<<<<<<<< @@ -5480,7 +5413,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_XGOTREF(__pyx_t_3); /*try:*/ { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":987 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":987 * cdef inline int import_array() except -1: * try: * _import_array() # <<<<<<<<<<<<<< @@ -5489,7 +5422,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { */ __pyx_t_4 = _import_array(); if (unlikely(__pyx_t_4 == -1)) __PYX_ERR(1, 987, __pyx_L3_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 * # Cython code. * cdef inline int import_array() except -1: * try: # <<<<<<<<<<<<<< @@ -5500,11 +5433,11 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0; __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0; __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0; - goto __pyx_L8_try_end; + goto __pyx_L10_try_end; __pyx_L3_error:; __Pyx_PyThreadState_assign - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":988 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":988 * try: * _import_array() * except Exception: # <<<<<<<<<<<<<< @@ -5519,7 +5452,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_GOTREF(__pyx_t_6); __Pyx_GOTREF(__pyx_t_7); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":989 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":989 * _import_array() * except Exception: * raise ImportError("numpy.core.multiarray failed to import") # <<<<<<<<<<<<<< @@ -5535,7 +5468,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { goto __pyx_L5_except_error; __pyx_L5_except_error:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 * # Cython code. * cdef inline int import_array() except -1: * try: # <<<<<<<<<<<<<< @@ -5548,10 +5481,10 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_XGIVEREF(__pyx_t_3); __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3); goto __pyx_L1_error; - __pyx_L8_try_end:; + __pyx_L10_try_end:; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":985 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":985 * # Versions of the import_* functions which are more suitable for * # Cython code. * cdef inline int import_array() except -1: # <<<<<<<<<<<<<< @@ -5575,7 +5508,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":991 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":991 * raise ImportError("numpy.core.multiarray failed to import") * * cdef inline int import_umath() except -1: # <<<<<<<<<<<<<< @@ -5598,7 +5531,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) { __Pyx_RefNannySetupContext("import_umath", 0); 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__pyx_t_1 = 0; __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0; __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0; - goto __pyx_L8_try_end; + goto __pyx_L10_try_end; __pyx_L3_error:; __Pyx_PyThreadState_assign - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":994 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":994 * try: * _import_umath() * except Exception: # <<<<<<<<<<<<<< @@ -5653,7 +5586,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) { __Pyx_GOTREF(__pyx_t_6); __Pyx_GOTREF(__pyx_t_7); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":995 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":995 * _import_umath() * except Exception: * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<< @@ -5669,7 +5602,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) { goto __pyx_L5_except_error; __pyx_L5_except_error:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":992 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":992 * * cdef inline int import_umath() except -1: * try: # <<<<<<<<<<<<<< @@ -5682,10 +5615,10 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) { __Pyx_XGIVEREF(__pyx_t_3); __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3); goto __pyx_L1_error; - __pyx_L8_try_end:; + __pyx_L10_try_end:; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":991 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":991 * raise ImportError("numpy.core.multiarray failed to import") * * cdef inline int import_umath() except -1: # <<<<<<<<<<<<<< @@ -5709,7 +5642,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) { return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":997 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":997 * raise ImportError("numpy.core.umath failed to import") * * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<< @@ -5732,7 +5665,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) { __Pyx_RefNannySetupContext("import_ufunc", 0); 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if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 6, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_2); - if (PyDict_SetItem(__pyx_d, __pyx_n_s_calc_rmse, __pyx_t_2) < 0) __PYX_ERR(0, 8, __pyx_L1_error) + if (PyDict_SetItem(__pyx_d, __pyx_n_s_calc_rmse, __pyx_t_2) < 0) __PYX_ERR(0, 6, __pyx_L1_error) __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; @@ -6311,7 +6243,7 @@ PyMODINIT_FUNC PyInit_lasso(void) if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_1) < 0) __PYX_ERR(0, 1, __pyx_L1_error) __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":997 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":997 * raise ImportError("numpy.core.umath failed to import") * * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<< @@ -6328,7 +6260,7 @@ PyMODINIT_FUNC PyInit_lasso(void) __Pyx_XDECREF(__pyx_t_2); if (__pyx_m) { if (__pyx_d) { - __Pyx_AddTraceback("init ccd.models.lasso", 0, __pyx_lineno, __pyx_filename); + __Pyx_AddTraceback("init ccd.models.lasso", __pyx_clineno, __pyx_lineno, __pyx_filename); } Py_DECREF(__pyx_m); __pyx_m = 0; } else if (!PyErr_Occurred()) { @@ -7062,22 +6994,17 @@ static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, P PyCFunctionObject *func = (PyCFunctionObject*)func_obj; PyCFunction meth = PyCFunction_GET_FUNCTION(func); PyObject *self = PyCFunction_GET_SELF(func); - int flags = PyCFunction_GET_FLAGS(func); assert(PyCFunction_Check(func)); - assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))); + assert(METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST))); assert(nargs >= 0); assert(nargs == 0 || args != NULL); /* _PyCFunction_FastCallDict() must not be called with an exception set, because it may clear it (directly or indirectly) and so the caller loses its exception */ assert(!PyErr_Occurred()); - if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) { - return (*((__Pyx_PyCFunctionFastWithKeywords)meth)) (self, args, nargs, NULL); - } else { - return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs); - } + return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL); } -#endif +#endif // CYTHON_FAST_PYCCALL /* PyFunctionFastCall */ #if CYTHON_FAST_PYCALL @@ -7196,8 +7123,8 @@ static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_LeaveRecursiveCall(); return result; } -#endif -#endif +#endif // CPython < 3.6 +#endif // CYTHON_FAST_PYCALL /* PyObjectCallMethO */ #if CYTHON_COMPILING_IN_CPYTHON @@ -7237,7 +7164,11 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec return __Pyx_PyFunction_FastCall(func, &arg, 1); } #endif +#ifdef __Pyx_CyFunction_USED + if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { +#else if (likely(PyCFunction_Check(func))) { +#endif if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { return __Pyx_PyObject_CallMethO(func, arg); #if CYTHON_FAST_PYCCALL @@ -7260,7 +7191,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec #endif /* ExtTypeTest */ - static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; @@ -7273,7 +7204,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec } /* PyErrFetchRestore */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; tmp_type = tstate->curexc_type; @@ -7297,20 +7228,20 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject #endif /* RaiseTooManyValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { + static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } /* RaiseNeedMoreValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { + static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } /* IterFinish */ - static CYTHON_INLINE int __Pyx_IterFinish(void) { + static CYTHON_INLINE int __Pyx_IterFinish(void) { #if CYTHON_FAST_THREAD_STATE PyThreadState *tstate = PyThreadState_GET(); PyObject* exc_type = tstate->curexc_type; @@ -7345,7 +7276,7 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject } /* UnpackItemEndCheck */ - static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { + static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { if (unlikely(retval)) { Py_DECREF(retval); __Pyx_RaiseTooManyValuesError(expected); @@ -7357,7 +7288,7 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject } /* RaiseArgTupleInvalid */ - static void __Pyx_RaiseArgtupleInvalid( + static void __Pyx_RaiseArgtupleInvalid( const char* func_name, int exact, Py_ssize_t num_min, @@ -7383,7 +7314,7 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject } /* RaiseDoubleKeywords */ - static void __Pyx_RaiseDoubleKeywordsError( + static void __Pyx_RaiseDoubleKeywordsError( const char* func_name, PyObject* kw_name) { @@ -7397,7 +7328,7 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject } /* ParseKeywords */ - static int __Pyx_ParseOptionalKeywords( + static int __Pyx_ParseOptionalKeywords( PyObject *kwds, PyObject **argnames[], PyObject *kwds2, @@ -7499,7 +7430,7 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject } /* ArgTypeTest */ - static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { + static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { PyErr_Format(PyExc_TypeError, "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", name, type->tp_name, Py_TYPE(obj)->tp_name); @@ -7526,7 +7457,7 @@ static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, in } /* RaiseException */ - #if PY_MAJOR_VERSION < 3 + #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { __Pyx_PyThreadState_declare @@ -7689,7 +7620,7 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject #endif /* WriteUnraisableException */ - static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, + static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename, int full_traceback, CYTHON_UNUSED int nogil) { PyObject *old_exc, *old_val, *old_tb; @@ -7731,12 +7662,12 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject } /* RaiseNoneIterError */ - static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { + static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } /* SaveResetException */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { *type = tstate->exc_type; *value = tstate->exc_value; @@ -7760,7 +7691,7 @@ static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject #endif /* PyErrExceptionMatches */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) { PyObject *exc_type = tstate->curexc_type; if (exc_type == err) return 1; @@ -7770,7 +7701,7 @@ static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tsta #endif /* GetException */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { #else static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { @@ -7831,7 +7762,7 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) } /* Import */ - static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { + static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { PyObject *empty_list = 0; PyObject *module = 0; PyObject *global_dict = 0; @@ -7905,7 +7836,7 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) } /* ImportFrom */ - static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { + static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { PyErr_Format(PyExc_ImportError, @@ -7918,42 +7849,8 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) return value; } -/* CLineInTraceback */ - static int __Pyx_CLineForTraceback(int c_line) { -#ifdef CYTHON_CLINE_IN_TRACEBACK - return ((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0; -#else - PyObject **cython_runtime_dict; - PyObject *use_cline; - cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); - if (unlikely(!cython_runtime_dict)) { - PyObject *ptype, *pvalue, *ptraceback; - PyObject *use_cline_obj; - PyErr_Fetch(&ptype, &pvalue, &ptraceback); - use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); - if (use_cline_obj) { - use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; - Py_DECREF(use_cline_obj); - } else { - use_cline = NULL; - } - PyErr_Restore(ptype, pvalue, ptraceback); - } else { - use_cline = PyDict_GetItem(*_PyObject_GetDictPtr(__pyx_cython_runtime), __pyx_n_s_cline_in_traceback); - } - if (!use_cline) { - c_line = 0; - PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); - } - else if (PyObject_Not(use_cline) != 0) { - c_line = 0; - } - return c_line; -#endif -} - /* CodeObjectCache */ - static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; @@ -8033,7 +7930,7 @@ static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { } /* AddTraceback */ - #include "compile.h" + #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( @@ -8092,15 +7989,12 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyFrameObject *py_frame = 0; - if (c_line) { - c_line = __Pyx_CLineForTraceback(c_line); - } - py_code = __pyx_find_code_object(c_line ? -c_line : py_line); + py_code = __pyx_find_code_object(c_line ? c_line : py_line); if (!py_code) { py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) goto bad; - __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); + __pyx_insert_code_object(c_line ? c_line : py_line, py_code); } py_frame = PyFrame_New( PyThreadState_GET(), /*PyThreadState *tstate,*/ @@ -8137,8 +8031,8 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif - /* CIntFromPyVerify */ - #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + /* CIntFromPyVerify */ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) @@ -8160,7 +8054,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); @@ -8180,7 +8074,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -8315,7 +8209,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); @@ -8335,7 +8229,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -8470,7 +8364,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -8501,7 +8395,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -8532,7 +8426,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -8721,7 +8615,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -8752,7 +8646,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -8941,7 +8835,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CheckBinaryVersion */ - static int __Pyx_check_binary_version(void) { + static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); @@ -8956,8 +8850,45 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { return 0; } +/* FunctionExport */ + static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig) { + PyObject *d = 0; + PyObject *cobj = 0; + union { + void (*fp)(void); + void *p; + } tmp; + d = PyObject_GetAttrString(__pyx_m, (char *)"__pyx_capi__"); + if (!d) { + PyErr_Clear(); + d = PyDict_New(); + if (!d) + goto bad; + Py_INCREF(d); + if (PyModule_AddObject(__pyx_m, (char *)"__pyx_capi__", d) < 0) + goto bad; + } + tmp.fp = f; +#if PY_VERSION_HEX >= 0x02070000 + cobj = PyCapsule_New(tmp.p, sig, 0); +#else + cobj = PyCObject_FromVoidPtrAndDesc(tmp.p, (void *)sig, 0); +#endif + if (!cobj) + goto bad; + if (PyDict_SetItemString(d, name, cobj) < 0) + goto bad; + Py_DECREF(cobj); + Py_DECREF(d); + return 0; +bad: + Py_XDECREF(cobj); + Py_XDECREF(d); + return -1; +} + /* ModuleImport */ - #ifndef __PYX_HAVE_RT_ImportModule + #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; @@ -8975,7 +8906,7 @@ static PyObject *__Pyx_ImportModule(const char *name) { #endif /* TypeImport */ - #ifndef __PYX_HAVE_RT_ImportType + #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) @@ -9040,7 +8971,7 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class #endif /* InitStrings */ - static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { @@ -9065,8 +8996,6 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class #endif if (!*t->p) return -1; - if (PyObject_Hash(*t->p) == -1) - PyErr_Clear(); ++t; } return 0; @@ -9075,11 +9004,11 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); } -static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { +static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } -static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { +static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if CYTHON_COMPILING_IN_CPYTHON && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) if ( #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII diff --git a/ccd/models/lasso.pxd b/ccd/models/lasso.pxd new file mode 100644 index 0000000..d39129d --- /dev/null +++ b/ccd/models/lasso.pxd @@ -0,0 +1,15 @@ +import numpy as np +cimport numpy as np + +from cpython cimport bool + +ctypedef np.float64_t STYPE_t +ctypedef float FTYPE_t +ctypedef int ITYPE_t +ctypedef bool BTYPE_t +ctypedef np.long_t LTYPE_t + + +cdef np.ndarray coefficient_matrix(np.ndarray[LTYPE_t, ndim=1], + FTYPE_t, + ITYPE_t) \ No newline at end of file diff --git a/ccd/models/lasso.pyx b/ccd/models/lasso.pyx index dc04ec6..d268749 100644 --- a/ccd/models/lasso.pyx +++ b/ccd/models/lasso.pyx @@ -2,17 +2,9 @@ import numpy as np cimport numpy as np -from cpython cimport bool - from ccd.models import FittedModel from ccd.math_utils import calc_rmse -ctypedef np.float64_t STYPE_t -ctypedef float FTYPE_t -ctypedef int ITYPE_t -ctypedef bool BTYPE_t -ctypedef np.long_t LTYPE_t - cdef np.ndarray coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, FTYPE_t avg_days_yr, diff --git a/ccd/models/tmask.c b/ccd/models/tmask.c index 3531b45..981935c 100644 --- a/ccd/models/tmask.c +++ b/ccd/models/tmask.c @@ -1,18 +1,14 @@ -/* Generated by Cython 0.26 */ +/* Generated by Cython 0.25.2 */ /* BEGIN: Cython Metadata { "distutils": { "depends": [ - "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h", - "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h" + "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h", + "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h" ], "include_dirs": [ - "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include" - ], - "name": "ccd.models.tmask", - "sources": [ - "ccd/models/tmask.pyx" + "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include" ] }, "module_name": "ccd.models.tmask" @@ -26,7 +22,7 @@ END: Cython Metadata */ #elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) #error Cython requires Python 2.6+ or Python 3.2+. #else -#define CYTHON_ABI "0_26" +#define CYTHON_ABI "0_25_2" #include #ifndef offsetof #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) @@ -48,7 +44,6 @@ END: Cython Metadata */ #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif -#define __PYX_COMMA , #ifndef HAVE_LONG_LONG #if PY_VERSION_HEX >= 0x03030000 || (PY_MAJOR_VERSION == 2 && PY_VERSION_HEX >= 0x02070000) #define HAVE_LONG_LONG @@ -201,20 +196,16 @@ END: Cython Metadata */ #ifndef Py_TPFLAGS_HAVE_FINALIZE #define Py_TPFLAGS_HAVE_FINALIZE 0 #endif -#if PY_VERSION_HEX < 0x030700A0 || !defined(METH_FASTCALL) - #ifndef METH_FASTCALL - #define METH_FASTCALL 0x80 - #endif - typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, Py_ssize_t nargs); - typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject **args, - Py_ssize_t nargs, PyObject *kwnames); +#ifndef METH_FASTCALL + #define METH_FASTCALL 0x80 + typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, + Py_ssize_t nargs, PyObject *kwnames); #else #define __Pyx_PyCFunctionFast _PyCFunctionFast - #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords #endif #if CYTHON_FAST_PYCCALL #define __Pyx_PyFastCFunction_Check(func)\ - ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))))) + ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST))))) #else #define __Pyx_PyFastCFunction_Check(func) 0 #endif @@ -341,12 +332,6 @@ END: Cython Metadata */ #else #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) #endif -#ifndef __has_attribute - #define __has_attribute(x) 0 -#endif -#ifndef __has_cpp_attribute - #define __has_cpp_attribute(x) 0 -#endif #if CYTHON_USE_ASYNC_SLOTS #if PY_VERSION_HEX >= 0x030500B1 #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods @@ -401,35 +386,6 @@ END: Cython Metadata */ # endif #endif #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) -#ifdef _MSC_VER - #ifndef _MSC_STDINT_H_ - #if _MSC_VER < 1300 - typedef unsigned char uint8_t; - typedef unsigned int uint32_t; - #else - typedef unsigned __int8 uint8_t; - typedef unsigned __int32 uint32_t; - #endif - #endif -#else - #include -#endif -#ifndef CYTHON_FALLTHROUGH - #ifdef __cplusplus - #if __has_cpp_attribute(fallthrough) - #define CYTHON_FALLTHROUGH [[fallthrough]] - #elif __has_cpp_attribute(clang::fallthrough) - #define CYTHON_FALLTHROUGH [[clang::fallthrough]] - #endif - #endif - #ifndef CYTHON_FALLTHROUGH - #if __has_attribute(fallthrough) || (defined(__GNUC__) && defined(__attribute__)) - #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) - #else - #define CYTHON_FALLTHROUGH - #endif - #endif -#endif #ifndef CYTHON_INLINE #if defined(__clang__) @@ -538,8 +494,8 @@ typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* enc #else #define __Pyx_sst_abs(value) ((value<0) ? -value : value) #endif -static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); -static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); +static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); +static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) #define __Pyx_PyBytes_FromString PyBytes_FromString @@ -552,11 +508,8 @@ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize #endif -#define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) @@ -678,12 +631,10 @@ static int __Pyx_init_sys_getdefaultencoding_params(void) { #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ */ -static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } static PyObject *__pyx_m; static PyObject *__pyx_d; static PyObject *__pyx_b; -static PyObject *__pyx_cython_runtime; static PyObject *__pyx_empty_tuple; static PyObject *__pyx_empty_bytes; static PyObject *__pyx_empty_unicode; @@ -759,7 +710,7 @@ typedef struct { } __Pyx_BufFmt_Context; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":725 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":725 * # in Cython to enable them only on the right systems. * * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< @@ -768,7 +719,7 @@ typedef struct { */ typedef npy_int8 __pyx_t_5numpy_int8_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":726 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":726 * * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< @@ -777,7 +728,7 @@ typedef npy_int8 __pyx_t_5numpy_int8_t; */ typedef npy_int16 __pyx_t_5numpy_int16_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":727 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":727 * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< @@ -786,7 +737,7 @@ typedef npy_int16 __pyx_t_5numpy_int16_t; */ typedef npy_int32 __pyx_t_5numpy_int32_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":728 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":728 * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< @@ -795,7 +746,7 @@ typedef npy_int32 __pyx_t_5numpy_int32_t; */ typedef npy_int64 __pyx_t_5numpy_int64_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":732 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":732 * #ctypedef npy_int128 int128_t * * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< @@ -804,7 +755,7 @@ typedef npy_int64 __pyx_t_5numpy_int64_t; */ typedef npy_uint8 __pyx_t_5numpy_uint8_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":733 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":733 * * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< @@ -813,7 +764,7 @@ typedef npy_uint8 __pyx_t_5numpy_uint8_t; */ typedef npy_uint16 __pyx_t_5numpy_uint16_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":734 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":734 * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< @@ -822,7 +773,7 @@ typedef npy_uint16 __pyx_t_5numpy_uint16_t; */ typedef npy_uint32 __pyx_t_5numpy_uint32_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":735 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":735 * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< @@ -831,7 +782,7 @@ typedef npy_uint32 __pyx_t_5numpy_uint32_t; */ typedef npy_uint64 __pyx_t_5numpy_uint64_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":739 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":739 * #ctypedef npy_uint128 uint128_t * * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< @@ -840,7 +791,7 @@ typedef npy_uint64 __pyx_t_5numpy_uint64_t; */ typedef npy_float32 __pyx_t_5numpy_float32_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":740 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":740 * * ctypedef npy_float32 float32_t * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< @@ -849,7 +800,7 @@ typedef npy_float32 __pyx_t_5numpy_float32_t; */ typedef npy_float64 __pyx_t_5numpy_float64_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":749 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":749 * # The int types are mapped a bit surprising -- * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t # <<<<<<<<<<<<<< @@ -858,7 +809,7 @@ typedef npy_float64 __pyx_t_5numpy_float64_t; */ typedef npy_long __pyx_t_5numpy_int_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":750 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":750 * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< @@ -867,7 +818,7 @@ typedef npy_long __pyx_t_5numpy_int_t; */ typedef npy_longlong __pyx_t_5numpy_long_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":751 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":751 * ctypedef npy_long int_t * ctypedef npy_longlong long_t * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< @@ -876,7 +827,7 @@ typedef npy_longlong __pyx_t_5numpy_long_t; */ typedef npy_longlong __pyx_t_5numpy_longlong_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":753 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":753 * ctypedef npy_longlong longlong_t * * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<< @@ -885,7 +836,7 @@ typedef npy_longlong __pyx_t_5numpy_longlong_t; */ typedef npy_ulong __pyx_t_5numpy_uint_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":754 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":754 * * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<< @@ -894,7 +845,7 @@ typedef npy_ulong __pyx_t_5numpy_uint_t; */ typedef npy_ulonglong __pyx_t_5numpy_ulong_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":755 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":755 * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<< @@ -903,7 +854,7 @@ typedef npy_ulonglong __pyx_t_5numpy_ulong_t; */ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":757 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":757 * ctypedef npy_ulonglong ulonglong_t * * ctypedef npy_intp intp_t # <<<<<<<<<<<<<< @@ -912,7 +863,7 @@ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; */ typedef npy_intp __pyx_t_5numpy_intp_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":758 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":758 * * ctypedef npy_intp intp_t * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<< @@ -921,7 +872,7 @@ typedef npy_intp __pyx_t_5numpy_intp_t; */ typedef npy_uintp __pyx_t_5numpy_uintp_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":760 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":760 * ctypedef npy_uintp uintp_t * * ctypedef npy_double float_t # <<<<<<<<<<<<<< @@ -930,7 +881,7 @@ typedef npy_uintp __pyx_t_5numpy_uintp_t; */ typedef npy_double __pyx_t_5numpy_float_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":761 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":761 * * ctypedef npy_double float_t * ctypedef npy_double double_t # <<<<<<<<<<<<<< @@ -939,7 +890,7 @@ typedef npy_double __pyx_t_5numpy_float_t; */ typedef npy_double __pyx_t_5numpy_double_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":762 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":762 * ctypedef npy_double float_t * ctypedef npy_double double_t * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<< @@ -1010,7 +961,7 @@ static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(do /*--- Type declarations ---*/ -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":764 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":764 * ctypedef npy_longdouble longdouble_t * * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<< @@ -1019,7 +970,7 @@ static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(do */ typedef npy_cfloat __pyx_t_5numpy_cfloat_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":765 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":765 * * ctypedef npy_cfloat cfloat_t * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<< @@ -1028,7 +979,7 @@ typedef npy_cfloat __pyx_t_5numpy_cfloat_t; */ typedef npy_cdouble __pyx_t_5numpy_cdouble_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":766 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":766 * ctypedef npy_cfloat cfloat_t * ctypedef npy_cdouble cdouble_t * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<< @@ -1037,7 +988,7 @@ typedef npy_cdouble __pyx_t_5numpy_cdouble_t; */ typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":768 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":768 * ctypedef npy_clongdouble clongdouble_t * * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<< @@ -1260,7 +1211,7 @@ typedef PyBoolObject *__pyx_t_3ccd_6models_5tmask_BTYPE_t; #else #define __Pyx_TraceDeclarations #define __Pyx_TraceFrameInit(codeobj) - #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if ((1)); else goto_error; + #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if (1); else goto_error; #define __Pyx_TraceException() #define __Pyx_TraceReturn(result, nogil) #endif @@ -1318,7 +1269,7 @@ typedef PyBoolObject *__pyx_t_3ccd_6models_5tmask_BTYPE_t; } #endif #else - #define __Pyx_TraceLine(lineno, nogil, goto_error) if ((1)); else goto_error; + #define __Pyx_TraceLine(lineno, nogil, goto_error) if (1); else goto_error; #endif /* BufferFormatCheck.proto */ @@ -1328,7 +1279,7 @@ static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info); static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts); static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, __Pyx_BufFmt_StackElem* stack, - __Pyx_TypeInfo* type); + __Pyx_TypeInfo* type); // PROTO /* PyObjectGetAttrStr.proto */ #if CYTHON_USE_TYPE_SLOTS @@ -1487,9 +1438,6 @@ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); /* ImportFrom.proto */ static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); -/* CLineInTraceback.proto */ -static int __Pyx_CLineForTraceback(int c_line); - /* CodeObjectCache.proto */ typedef struct { PyCodeObject* code_object; @@ -1791,11 +1739,9 @@ static const char __pyx_k_RLM[] = "RLM"; static const char __pyx_k_abs[] = "abs"; static const char __pyx_k_cos[] = "cos"; static const char __pyx_k_fit[] = "fit"; -static const char __pyx_k_log[] = "log"; static const char __pyx_k_sin[] = "sin"; static const char __pyx_k_ceil[] = "ceil"; static const char __pyx_k_main[] = "__main__"; -static const char __pyx_k_name[] = "__name__"; static const char __pyx_k_ones[] = "ones"; static const char __pyx_k_test[] = "__test__"; static const char __pyx_k_dtype[] = "dtype"; @@ -1805,14 +1751,11 @@ static const char __pyx_k_range[] = "range"; static const char __pyx_k_shape[] = "shape"; static const char __pyx_k_zeros[] = "zeros"; static const char __pyx_k_import[] = "__import__"; -static const char __pyx_k_logging[] = "logging"; static const char __pyx_k_maxiter[] = "maxiter"; static const char __pyx_k_predict[] = "predict"; -static const char __pyx_k_getLogger[] = "getLogger"; static const char __pyx_k_ValueError[] = "ValueError"; static const char __pyx_k_ImportError[] = "ImportError"; static const char __pyx_k_RuntimeError[] = "RuntimeError"; -static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; static const char __pyx_k_ccd_models_robust_fit[] = "ccd.models.robust_fit"; static const char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import"; @@ -1833,17 +1776,12 @@ static PyObject *__pyx_n_s_ValueError; static PyObject *__pyx_n_s_abs; static PyObject *__pyx_n_s_ccd_models_robust_fit; static PyObject *__pyx_n_s_ceil; -static PyObject *__pyx_n_s_cline_in_traceback; static PyObject *__pyx_n_s_cos; static PyObject *__pyx_n_s_dtype; static PyObject *__pyx_n_s_fit; -static PyObject *__pyx_n_s_getLogger; static PyObject *__pyx_n_s_import; -static PyObject *__pyx_n_s_log; -static PyObject *__pyx_n_s_logging; static PyObject *__pyx_n_s_main; static PyObject *__pyx_n_s_maxiter; -static PyObject *__pyx_n_s_name; static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou; static PyObject *__pyx_n_s_np; @@ -1886,7 +1824,7 @@ static PyObject *__pyx_tuple__16; static PyObject *__pyx_tuple__17; /* "ccd/models/tmask.pyx":10 - * log = logging.getLogger(__name__) + * #log = logging.getLogger(__name__) * * cdef np.ndarray[STYPE_t, ndim=2] tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, # <<<<<<<<<<<<<< * FTYPE_t avg_days_yr): @@ -2375,7 +2313,7 @@ static PyArrayObject *__pyx_f_3ccd_6models_5tmask_tmask_coefficient_matrix(PyArr goto __pyx_L0; /* "ccd/models/tmask.pyx":10 - * log = logging.getLogger(__name__) + * #log = logging.getLogger(__name__) * * cdef np.ndarray[STYPE_t, ndim=2] tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, # <<<<<<<<<<<<<< * FTYPE_t avg_days_yr): @@ -2837,7 +2775,7 @@ static PyArrayObject *__pyx_f_3ccd_6models_5tmask_tmask(PyArrayObject *__pyx_v_d return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":197 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":197 * # experimental exception made for __getbuffer__ and __releasebuffer__ * # -- the details of this may change. * def __getbuffer__(ndarray self, Py_buffer* info, int flags): # <<<<<<<<<<<<<< @@ -2886,7 +2824,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P } __Pyx_TraceCall("__getbuffer__", __pyx_f[1], 197, 0, __PYX_ERR(1, 197, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":203 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":203 * # of flags * * if info == NULL: return # <<<<<<<<<<<<<< @@ -2899,7 +2837,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P goto __pyx_L0; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":206 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":206 * * cdef int copy_shape, i, ndim * cdef int endian_detector = 1 # <<<<<<<<<<<<<< @@ -2908,7 +2846,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_endian_detector = 1; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":207 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":207 * cdef int copy_shape, i, ndim * cdef int endian_detector = 1 * cdef bint little_endian = ((&endian_detector)[0] != 0) # <<<<<<<<<<<<<< @@ -2917,7 +2855,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_little_endian = ((((char *)(&__pyx_v_endian_detector))[0]) != 0); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":209 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":209 * cdef bint little_endian = ((&endian_detector)[0] != 0) * * ndim = PyArray_NDIM(self) # <<<<<<<<<<<<<< @@ -2926,7 +2864,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_ndim = PyArray_NDIM(__pyx_v_self); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":211 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":211 * ndim = PyArray_NDIM(self) * * if sizeof(npy_intp) != sizeof(Py_ssize_t): # <<<<<<<<<<<<<< @@ -2936,7 +2874,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = (((sizeof(npy_intp)) != (sizeof(Py_ssize_t))) != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":212 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":212 * * if sizeof(npy_intp) != sizeof(Py_ssize_t): * copy_shape = 1 # <<<<<<<<<<<<<< @@ -2945,7 +2883,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_copy_shape = 1; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":211 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":211 * ndim = PyArray_NDIM(self) * * if sizeof(npy_intp) != sizeof(Py_ssize_t): # <<<<<<<<<<<<<< @@ -2955,7 +2893,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P goto __pyx_L4; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":214 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":214 * copy_shape = 1 * else: * copy_shape = 0 # <<<<<<<<<<<<<< @@ -2967,7 +2905,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P } __pyx_L4:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 * copy_shape = 0 * * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -2981,7 +2919,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P goto __pyx_L6_bool_binop_done; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":217 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":217 * * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): # <<<<<<<<<<<<<< @@ -2992,7 +2930,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = __pyx_t_2; __pyx_L6_bool_binop_done:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 * copy_shape = 0 * * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -3001,7 +2939,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":218 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":218 * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): * raise ValueError(u"ndarray is not C contiguous") # <<<<<<<<<<<<<< @@ -3014,7 +2952,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __PYX_ERR(1, 218, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 * copy_shape = 0 * * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -3023,7 +2961,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 * raise ValueError(u"ndarray is not C contiguous") * * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -3037,7 +2975,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P goto __pyx_L9_bool_binop_done; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":221 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":221 * * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): # <<<<<<<<<<<<<< @@ -3048,7 +2986,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = __pyx_t_2; __pyx_L9_bool_binop_done:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 * raise ValueError(u"ndarray is not C contiguous") * * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -3057,7 +2995,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":222 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":222 * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): * raise ValueError(u"ndarray is not Fortran contiguous") # <<<<<<<<<<<<<< @@ -3070,7 +3008,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __PYX_ERR(1, 222, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 * raise ValueError(u"ndarray is not C contiguous") * * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -3079,7 +3017,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":224 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":224 * raise ValueError(u"ndarray is not Fortran contiguous") * * info.buf = PyArray_DATA(self) # <<<<<<<<<<<<<< @@ -3088,7 +3026,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->buf = PyArray_DATA(__pyx_v_self); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":225 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":225 * * info.buf = PyArray_DATA(self) * info.ndim = ndim # <<<<<<<<<<<<<< @@ -3097,7 +3035,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->ndim = __pyx_v_ndim; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 * info.buf = PyArray_DATA(self) * info.ndim = ndim * if copy_shape: # <<<<<<<<<<<<<< @@ -3107,7 +3045,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = (__pyx_v_copy_shape != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":229 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":229 * # Allocate new buffer for strides and shape info. * # This is allocated as one block, strides first. * info.strides = stdlib.malloc(sizeof(Py_ssize_t) * ndim * 2) # <<<<<<<<<<<<<< @@ -3116,7 +3054,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->strides = ((Py_ssize_t *)malloc((((sizeof(Py_ssize_t)) * ((size_t)__pyx_v_ndim)) * 2))); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":230 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":230 * # This is allocated as one block, strides first. * info.strides = stdlib.malloc(sizeof(Py_ssize_t) * ndim * 2) * info.shape = info.strides + ndim # <<<<<<<<<<<<<< @@ -3125,7 +3063,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->shape = (__pyx_v_info->strides + __pyx_v_ndim); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":231 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":231 * info.strides = stdlib.malloc(sizeof(Py_ssize_t) * ndim * 2) * info.shape = info.strides + ndim * for i in range(ndim): # <<<<<<<<<<<<<< @@ -3136,7 +3074,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { __pyx_v_i = __pyx_t_5; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":232 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":232 * info.shape = info.strides + ndim * for i in range(ndim): * info.strides[i] = PyArray_STRIDES(self)[i] # <<<<<<<<<<<<<< @@ -3145,7 +3083,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ (__pyx_v_info->strides[__pyx_v_i]) = (PyArray_STRIDES(__pyx_v_self)[__pyx_v_i]); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":233 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":233 * for i in range(ndim): * info.strides[i] = PyArray_STRIDES(self)[i] * info.shape[i] = PyArray_DIMS(self)[i] # <<<<<<<<<<<<<< @@ -3155,7 +3093,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P (__pyx_v_info->shape[__pyx_v_i]) = (PyArray_DIMS(__pyx_v_self)[__pyx_v_i]); } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 * info.buf = PyArray_DATA(self) * info.ndim = ndim * if copy_shape: # <<<<<<<<<<<<<< @@ -3165,7 +3103,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P goto __pyx_L11; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":235 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":235 * info.shape[i] = PyArray_DIMS(self)[i] * else: * info.strides = PyArray_STRIDES(self) # <<<<<<<<<<<<<< @@ -3175,7 +3113,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P /*else*/ { __pyx_v_info->strides = ((Py_ssize_t *)PyArray_STRIDES(__pyx_v_self)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":236 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":236 * else: * info.strides = PyArray_STRIDES(self) * info.shape = PyArray_DIMS(self) # <<<<<<<<<<<<<< @@ -3186,7 +3124,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P } __pyx_L11:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":237 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":237 * info.strides = PyArray_STRIDES(self) * info.shape = PyArray_DIMS(self) * info.suboffsets = NULL # <<<<<<<<<<<<<< @@ -3195,7 +3133,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->suboffsets = NULL; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":238 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":238 * info.shape = PyArray_DIMS(self) * info.suboffsets = NULL * info.itemsize = PyArray_ITEMSIZE(self) # <<<<<<<<<<<<<< @@ -3204,7 +3142,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->itemsize = PyArray_ITEMSIZE(__pyx_v_self); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":239 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":239 * info.suboffsets = NULL * info.itemsize = PyArray_ITEMSIZE(self) * info.readonly = not PyArray_ISWRITEABLE(self) # <<<<<<<<<<<<<< @@ -3213,7 +3151,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->readonly = (!(PyArray_ISWRITEABLE(__pyx_v_self) != 0)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":242 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":242 * * cdef int t * cdef char* f = NULL # <<<<<<<<<<<<<< @@ -3222,7 +3160,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_f = NULL; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":243 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":243 * cdef int t * cdef char* f = NULL * cdef dtype descr = self.descr # <<<<<<<<<<<<<< @@ -3234,7 +3172,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_descr = ((PyArray_Descr *)__pyx_t_3); __pyx_t_3 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":246 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":246 * cdef int offset * * cdef bint hasfields = PyDataType_HASFIELDS(descr) # <<<<<<<<<<<<<< @@ -3243,7 +3181,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_hasfields = PyDataType_HASFIELDS(__pyx_v_descr); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 * cdef bint hasfields = PyDataType_HASFIELDS(descr) * * if not hasfields and not copy_shape: # <<<<<<<<<<<<<< @@ -3261,7 +3199,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_L15_bool_binop_done:; if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":250 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":250 * if not hasfields and not copy_shape: * # do not call releasebuffer * info.obj = None # <<<<<<<<<<<<<< @@ -3274,7 +3212,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = Py_None; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 * cdef bint hasfields = PyDataType_HASFIELDS(descr) * * if not hasfields and not copy_shape: # <<<<<<<<<<<<<< @@ -3284,7 +3222,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P goto __pyx_L14; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":253 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":253 * else: * # need to call releasebuffer * info.obj = self # <<<<<<<<<<<<<< @@ -3300,7 +3238,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P } __pyx_L14:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":255 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":255 * info.obj = self * * if not hasfields: # <<<<<<<<<<<<<< @@ -3310,7 +3248,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = ((!(__pyx_v_hasfields != 0)) != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":256 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":256 * * if not hasfields: * t = descr.type_num # <<<<<<<<<<<<<< @@ -3320,7 +3258,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_4 = __pyx_v_descr->type_num; __pyx_v_t = __pyx_t_4; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 * if not hasfields: * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -3340,7 +3278,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P } __pyx_L20_next_or:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":258 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":258 * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or * (descr.byteorder == c'<' and not little_endian)): # <<<<<<<<<<<<<< @@ -3357,7 +3295,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = __pyx_t_2; __pyx_L19_bool_binop_done:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 * if not hasfields: * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -3366,7 +3304,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":259 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":259 * if ((descr.byteorder == c'>' and little_endian) or * (descr.byteorder == c'<' and not little_endian)): * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< @@ -3379,7 +3317,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __PYX_ERR(1, 259, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 * if not hasfields: * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -3388,7 +3326,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":260 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":260 * (descr.byteorder == c'<' and not little_endian)): * raise ValueError(u"Non-native byte order not supported") * if t == NPY_BYTE: f = "b" # <<<<<<<<<<<<<< @@ -3400,7 +3338,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"b"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":261 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":261 * raise ValueError(u"Non-native byte order not supported") * if t == NPY_BYTE: f = "b" * elif t == NPY_UBYTE: f = "B" # <<<<<<<<<<<<<< @@ -3411,7 +3349,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"B"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":262 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":262 * if t == NPY_BYTE: f = "b" * elif t == NPY_UBYTE: f = "B" * elif t == NPY_SHORT: f = "h" # <<<<<<<<<<<<<< @@ -3422,7 +3360,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"h"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":263 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":263 * elif t == NPY_UBYTE: f = "B" * elif t == NPY_SHORT: f = "h" * elif t == NPY_USHORT: f = "H" # <<<<<<<<<<<<<< @@ -3433,7 +3371,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"H"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":264 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":264 * elif t == NPY_SHORT: f = "h" * elif t == NPY_USHORT: f = "H" * elif t == NPY_INT: f = "i" # <<<<<<<<<<<<<< @@ -3444,7 +3382,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"i"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":265 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":265 * elif t == NPY_USHORT: f = "H" * elif t == NPY_INT: f = "i" * elif t == NPY_UINT: f = "I" # <<<<<<<<<<<<<< @@ -3455,7 +3393,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"I"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":266 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":266 * elif t == NPY_INT: f = "i" * elif t == NPY_UINT: f = "I" * elif t == NPY_LONG: f = "l" # <<<<<<<<<<<<<< @@ -3466,7 +3404,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"l"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":267 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":267 * elif t == NPY_UINT: f = "I" * elif t == NPY_LONG: f = "l" * elif t == NPY_ULONG: f = "L" # <<<<<<<<<<<<<< @@ -3477,7 +3415,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"L"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":268 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":268 * elif t == NPY_LONG: f = "l" * elif t == NPY_ULONG: f = "L" * elif t == NPY_LONGLONG: f = "q" # <<<<<<<<<<<<<< @@ -3488,7 +3426,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"q"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":269 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":269 * elif t == NPY_ULONG: f = "L" * elif t == NPY_LONGLONG: f = "q" * elif t == NPY_ULONGLONG: f = "Q" # <<<<<<<<<<<<<< @@ -3499,7 +3437,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Q"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":270 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":270 * elif t == NPY_LONGLONG: f = "q" * elif t == NPY_ULONGLONG: f = "Q" * elif t == NPY_FLOAT: f = "f" # <<<<<<<<<<<<<< @@ -3510,7 +3448,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"f"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":271 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":271 * elif t == NPY_ULONGLONG: f = "Q" * elif t == NPY_FLOAT: f = "f" * elif t == NPY_DOUBLE: f = "d" # <<<<<<<<<<<<<< @@ -3521,7 +3459,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"d"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":272 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":272 * elif t == NPY_FLOAT: f = "f" * elif t == NPY_DOUBLE: f = "d" * elif t == NPY_LONGDOUBLE: f = "g" # <<<<<<<<<<<<<< @@ -3532,7 +3470,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"g"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":273 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":273 * elif t == NPY_DOUBLE: f = "d" * elif t == NPY_LONGDOUBLE: f = "g" * elif t == NPY_CFLOAT: f = "Zf" # <<<<<<<<<<<<<< @@ -3543,7 +3481,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Zf"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":274 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":274 * elif t == NPY_LONGDOUBLE: f = "g" * elif t == NPY_CFLOAT: f = "Zf" * elif t == NPY_CDOUBLE: f = "Zd" # <<<<<<<<<<<<<< @@ -3554,7 +3492,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Zd"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":275 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":275 * elif t == NPY_CFLOAT: f = "Zf" * elif t == NPY_CDOUBLE: f = "Zd" * elif t == NPY_CLONGDOUBLE: f = "Zg" # <<<<<<<<<<<<<< @@ -3565,7 +3503,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Zg"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":276 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":276 * elif t == NPY_CDOUBLE: f = "Zd" * elif t == NPY_CLONGDOUBLE: f = "Zg" * elif t == NPY_OBJECT: f = "O" # <<<<<<<<<<<<<< @@ -3577,7 +3515,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P break; default: - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":278 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":278 * elif t == NPY_OBJECT: f = "O" * else: * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) # <<<<<<<<<<<<<< @@ -3603,7 +3541,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P break; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":279 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":279 * else: * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) * info.format = f # <<<<<<<<<<<<<< @@ -3612,7 +3550,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->format = __pyx_v_f; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":280 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":280 * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) * info.format = f * return # <<<<<<<<<<<<<< @@ -3622,7 +3560,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_r = 0; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":255 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":255 * info.obj = self * * if not hasfields: # <<<<<<<<<<<<<< @@ -3631,7 +3569,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":282 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":282 * return * else: * info.format = stdlib.malloc(_buffer_format_string_len) # <<<<<<<<<<<<<< @@ -3641,7 +3579,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P /*else*/ { __pyx_v_info->format = ((char *)malloc(0xFF)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":283 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":283 * else: * info.format = stdlib.malloc(_buffer_format_string_len) * info.format[0] = c'^' # Native data types, manual alignment # <<<<<<<<<<<<<< @@ -3650,7 +3588,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ (__pyx_v_info->format[0]) = '^'; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":284 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":284 * info.format = stdlib.malloc(_buffer_format_string_len) * info.format[0] = c'^' # Native data types, manual alignment * offset = 0 # <<<<<<<<<<<<<< @@ -3659,7 +3597,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_offset = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":285 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":285 * info.format[0] = c'^' # Native data types, manual alignment * offset = 0 * f = _util_dtypestring(descr, info.format + 1, # <<<<<<<<<<<<<< @@ -3669,7 +3607,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_7 = __pyx_f_5numpy__util_dtypestring(__pyx_v_descr, (__pyx_v_info->format + 1), (__pyx_v_info->format + 0xFF), (&__pyx_v_offset)); if (unlikely(__pyx_t_7 == NULL)) __PYX_ERR(1, 285, __pyx_L1_error) __pyx_v_f = __pyx_t_7; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":288 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":288 * info.format + _buffer_format_string_len, * &offset) * f[0] = c'\0' # Terminate format string # <<<<<<<<<<<<<< @@ -3679,7 +3617,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P (__pyx_v_f[0]) = '\x00'; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":197 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":197 * # experimental exception made for __getbuffer__ and __releasebuffer__ * # -- the details of this may change. * def __getbuffer__(ndarray self, Py_buffer* info, int flags): # <<<<<<<<<<<<<< @@ -3712,7 +3650,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":290 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":290 * f[0] = c'\0' # Terminate format string * * def __releasebuffer__(ndarray self, Py_buffer* info): # <<<<<<<<<<<<<< @@ -3738,7 +3676,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s __Pyx_RefNannySetupContext("__releasebuffer__", 0); __Pyx_TraceCall("__releasebuffer__", __pyx_f[1], 290, 0, __PYX_ERR(1, 290, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":291 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":291 * * def __releasebuffer__(ndarray self, Py_buffer* info): * if PyArray_HASFIELDS(self): # <<<<<<<<<<<<<< @@ -3748,7 +3686,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s __pyx_t_1 = (PyArray_HASFIELDS(__pyx_v_self) != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":292 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":292 * def __releasebuffer__(ndarray self, Py_buffer* info): * if PyArray_HASFIELDS(self): * stdlib.free(info.format) # <<<<<<<<<<<<<< @@ -3757,7 +3695,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s */ free(__pyx_v_info->format); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":291 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":291 * * def __releasebuffer__(ndarray self, Py_buffer* info): * if PyArray_HASFIELDS(self): # <<<<<<<<<<<<<< @@ -3766,7 +3704,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":293 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":293 * if PyArray_HASFIELDS(self): * stdlib.free(info.format) * if sizeof(npy_intp) != sizeof(Py_ssize_t): # <<<<<<<<<<<<<< @@ -3776,7 +3714,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s __pyx_t_1 = (((sizeof(npy_intp)) != (sizeof(Py_ssize_t))) != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":294 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":294 * stdlib.free(info.format) * if sizeof(npy_intp) != sizeof(Py_ssize_t): * stdlib.free(info.strides) # <<<<<<<<<<<<<< @@ -3785,7 +3723,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s */ free(__pyx_v_info->strides); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":293 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":293 * if PyArray_HASFIELDS(self): * stdlib.free(info.format) * if sizeof(npy_intp) != sizeof(Py_ssize_t): # <<<<<<<<<<<<<< @@ -3794,7 +3732,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":290 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":290 * f[0] = c'\0' # Terminate format string * * def __releasebuffer__(ndarray self, Py_buffer* info): # <<<<<<<<<<<<<< @@ -3805,13 +3743,13 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s /* function exit code */ goto __pyx_L0; __pyx_L1_error:; - __Pyx_WriteUnraisable("numpy.ndarray.__releasebuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0); + __Pyx_WriteUnraisable("numpy.ndarray.__releasebuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename, 0, 0); __pyx_L0:; __Pyx_TraceReturn(Py_None, 0); __Pyx_RefNannyFinishContext(); } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":770 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":770 * ctypedef npy_cdouble complex_t * * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<< @@ -3827,7 +3765,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__ __Pyx_RefNannySetupContext("PyArray_MultiIterNew1", 0); __Pyx_TraceCall("PyArray_MultiIterNew1", __pyx_f[1], 770, 0, __PYX_ERR(1, 770, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":771 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":771 * * cdef inline object PyArray_MultiIterNew1(a): * return PyArray_MultiIterNew(1, a) # <<<<<<<<<<<<<< @@ -3841,7 +3779,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__ __pyx_t_1 = 0; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":770 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":770 * ctypedef npy_cdouble complex_t * * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<< @@ -3861,7 +3799,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__ return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":773 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":773 * return PyArray_MultiIterNew(1, a) * * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<< @@ -3877,7 +3815,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__ __Pyx_RefNannySetupContext("PyArray_MultiIterNew2", 0); __Pyx_TraceCall("PyArray_MultiIterNew2", __pyx_f[1], 773, 0, __PYX_ERR(1, 773, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":774 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":774 * * cdef inline object PyArray_MultiIterNew2(a, b): * return PyArray_MultiIterNew(2, a, b) # <<<<<<<<<<<<<< @@ -3891,7 +3829,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__ __pyx_t_1 = 0; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":773 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":773 * return PyArray_MultiIterNew(1, a) * * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<< @@ -3911,7 +3849,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__ return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":776 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":776 * return PyArray_MultiIterNew(2, a, b) * * cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<< @@ -3927,7 +3865,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__ __Pyx_RefNannySetupContext("PyArray_MultiIterNew3", 0); __Pyx_TraceCall("PyArray_MultiIterNew3", __pyx_f[1], 776, 0, __PYX_ERR(1, 776, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":777 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":777 * * cdef inline object PyArray_MultiIterNew3(a, b, c): * return PyArray_MultiIterNew(3, a, b, c) # <<<<<<<<<<<<<< @@ -3941,7 +3879,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__ __pyx_t_1 = 0; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":776 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":776 * return PyArray_MultiIterNew(2, a, b) * * cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<< @@ -3961,7 +3899,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__ return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":779 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":779 * return PyArray_MultiIterNew(3, a, b, c) * * cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<< @@ -3977,7 +3915,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__ __Pyx_RefNannySetupContext("PyArray_MultiIterNew4", 0); __Pyx_TraceCall("PyArray_MultiIterNew4", __pyx_f[1], 779, 0, __PYX_ERR(1, 779, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":780 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":780 * * cdef inline object PyArray_MultiIterNew4(a, b, c, d): * return PyArray_MultiIterNew(4, a, b, c, d) # <<<<<<<<<<<<<< @@ -3991,7 +3929,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__ __pyx_t_1 = 0; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":779 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":779 * return PyArray_MultiIterNew(3, a, b, c) * * cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<< @@ -4011,7 +3949,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__ return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":782 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":782 * return PyArray_MultiIterNew(4, a, b, c, d) * * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<< @@ -4027,7 +3965,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__ __Pyx_RefNannySetupContext("PyArray_MultiIterNew5", 0); __Pyx_TraceCall("PyArray_MultiIterNew5", __pyx_f[1], 782, 0, __PYX_ERR(1, 782, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":783 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":783 * * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): * return PyArray_MultiIterNew(5, a, b, c, d, e) # <<<<<<<<<<<<<< @@ -4041,7 +3979,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__ __pyx_t_1 = 0; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":782 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":782 * return PyArray_MultiIterNew(4, a, b, c, d) * * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<< @@ -4061,7 +3999,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__ return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":785 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":785 * return PyArray_MultiIterNew(5, a, b, c, d, e) * * cdef inline char* _util_dtypestring(dtype descr, char* f, char* end, int* offset) except NULL: # <<<<<<<<<<<<<< @@ -4092,7 +4030,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_RefNannySetupContext("_util_dtypestring", 0); __Pyx_TraceCall("_util_dtypestring", __pyx_f[1], 785, 0, __PYX_ERR(1, 785, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":790 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":790 * * cdef dtype child * cdef int endian_detector = 1 # <<<<<<<<<<<<<< @@ -4101,7 +4039,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ __pyx_v_endian_detector = 1; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":791 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":791 * cdef dtype child * cdef int endian_detector = 1 * cdef bint little_endian = ((&endian_detector)[0] != 0) # <<<<<<<<<<<<<< @@ -4110,7 +4048,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ __pyx_v_little_endian = ((((char *)(&__pyx_v_endian_detector))[0]) != 0); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":794 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":794 * cdef tuple fields * * for childname in descr.names: # <<<<<<<<<<<<<< @@ -4133,7 +4071,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_XDECREF_SET(__pyx_v_childname, __pyx_t_3); __pyx_t_3 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":795 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":795 * * for childname in descr.names: * fields = descr.fields[childname] # <<<<<<<<<<<<<< @@ -4150,7 +4088,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_XDECREF_SET(__pyx_v_fields, ((PyObject*)__pyx_t_3)); __pyx_t_3 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":796 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":796 * for childname in descr.names: * fields = descr.fields[childname] * child, new_offset = fields # <<<<<<<<<<<<<< @@ -4189,7 +4127,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_XDECREF_SET(__pyx_v_new_offset, __pyx_t_4); __pyx_t_4 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":798 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":798 * child, new_offset = fields * * if (end - f) - (new_offset - offset[0]) < 15: # <<<<<<<<<<<<<< @@ -4206,7 +4144,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_t_6 = ((((__pyx_v_end - __pyx_v_f) - ((int)__pyx_t_5)) < 15) != 0); if (__pyx_t_6) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":799 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":799 * * if (end - f) - (new_offset - offset[0]) < 15: * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") # <<<<<<<<<<<<<< @@ -4219,7 +4157,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __PYX_ERR(1, 799, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":798 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":798 * child, new_offset = fields * * if (end - f) - (new_offset - offset[0]) < 15: # <<<<<<<<<<<<<< @@ -4228,7 +4166,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") * * if ((child.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -4248,7 +4186,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx } __pyx_L8_next_or:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":802 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":802 * * if ((child.byteorder == c'>' and little_endian) or * (child.byteorder == c'<' and not little_endian)): # <<<<<<<<<<<<<< @@ -4265,7 +4203,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_t_6 = __pyx_t_7; __pyx_L7_bool_binop_done:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") * * if ((child.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -4274,7 +4212,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ if (__pyx_t_6) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":803 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":803 * if ((child.byteorder == c'>' and little_endian) or * (child.byteorder == c'<' and not little_endian)): * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< @@ -4287,7 +4225,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __PYX_ERR(1, 803, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") * * if ((child.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -4296,7 +4234,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":813 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":813 * * # Output padding bytes * while offset[0] < new_offset: # <<<<<<<<<<<<<< @@ -4312,7 +4250,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; if (!__pyx_t_6) break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":814 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":814 * # Output padding bytes * while offset[0] < new_offset: * f[0] = 120 # "x"; pad byte # <<<<<<<<<<<<<< @@ -4321,7 +4259,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ (__pyx_v_f[0]) = 0x78; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":815 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":815 * while offset[0] < new_offset: * f[0] = 120 # "x"; pad byte * f += 1 # <<<<<<<<<<<<<< @@ -4330,7 +4268,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ __pyx_v_f = (__pyx_v_f + 1); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":816 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":816 * f[0] = 120 # "x"; pad byte * f += 1 * offset[0] += 1 # <<<<<<<<<<<<<< @@ -4341,7 +4279,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + 1); } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":818 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":818 * offset[0] += 1 * * offset[0] += child.itemsize # <<<<<<<<<<<<<< @@ -4351,7 +4289,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_t_8 = 0; (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + __pyx_v_child->elsize); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":820 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":820 * offset[0] += child.itemsize * * if not PyDataType_HASFIELDS(child): # <<<<<<<<<<<<<< @@ -4361,7 +4299,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_t_6 = ((!(PyDataType_HASFIELDS(__pyx_v_child) != 0)) != 0); if (__pyx_t_6) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":821 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":821 * * if not PyDataType_HASFIELDS(child): * t = child.type_num # <<<<<<<<<<<<<< @@ -4373,7 +4311,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_XDECREF_SET(__pyx_v_t, __pyx_t_4); __pyx_t_4 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":822 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":822 * if not PyDataType_HASFIELDS(child): * t = child.type_num * if end - f < 5: # <<<<<<<<<<<<<< @@ -4383,7 +4321,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_t_6 = (((__pyx_v_end - __pyx_v_f) < 5) != 0); if (__pyx_t_6) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":823 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":823 * t = child.type_num * if end - f < 5: * raise RuntimeError(u"Format string allocated too short.") # <<<<<<<<<<<<<< @@ -4396,7 +4334,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; __PYX_ERR(1, 823, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":822 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":822 * if not PyDataType_HASFIELDS(child): * t = child.type_num * if end - f < 5: # <<<<<<<<<<<<<< @@ -4405,7 +4343,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":826 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":826 * * # Until ticket #99 is fixed, use integers to avoid warnings * if t == NPY_BYTE: f[0] = 98 #"b" # <<<<<<<<<<<<<< @@ -4423,7 +4361,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":827 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":827 * # Until ticket #99 is fixed, use integers to avoid warnings * if t == NPY_BYTE: f[0] = 98 #"b" * elif t == NPY_UBYTE: f[0] = 66 #"B" # <<<<<<<<<<<<<< @@ -4441,7 +4379,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":828 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":828 * if t == NPY_BYTE: f[0] = 98 #"b" * elif t == NPY_UBYTE: f[0] = 66 #"B" * elif t == NPY_SHORT: f[0] = 104 #"h" # <<<<<<<<<<<<<< @@ -4459,7 +4397,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":829 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":829 * elif t == NPY_UBYTE: f[0] = 66 #"B" * elif t == NPY_SHORT: f[0] = 104 #"h" * elif t == NPY_USHORT: f[0] = 72 #"H" # <<<<<<<<<<<<<< @@ -4477,7 +4415,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":830 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":830 * elif t == NPY_SHORT: f[0] = 104 #"h" * elif t == NPY_USHORT: f[0] = 72 #"H" * elif t == NPY_INT: f[0] = 105 #"i" # <<<<<<<<<<<<<< @@ -4495,7 +4433,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":831 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":831 * elif t == NPY_USHORT: f[0] = 72 #"H" * elif t == NPY_INT: f[0] = 105 #"i" * elif t == NPY_UINT: f[0] = 73 #"I" # <<<<<<<<<<<<<< @@ -4513,7 +4451,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":832 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":832 * elif t == NPY_INT: f[0] = 105 #"i" * elif t == NPY_UINT: f[0] = 73 #"I" * elif t == NPY_LONG: f[0] = 108 #"l" # <<<<<<<<<<<<<< @@ -4531,7 +4469,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":833 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":833 * elif t == NPY_UINT: f[0] = 73 #"I" * elif t == NPY_LONG: f[0] = 108 #"l" * elif t == NPY_ULONG: f[0] = 76 #"L" # <<<<<<<<<<<<<< @@ -4549,7 +4487,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":834 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":834 * elif t == NPY_LONG: f[0] = 108 #"l" * elif t == NPY_ULONG: f[0] = 76 #"L" * elif t == NPY_LONGLONG: f[0] = 113 #"q" # <<<<<<<<<<<<<< @@ -4567,7 +4505,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":835 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":835 * elif t == NPY_ULONG: f[0] = 76 #"L" * elif t == NPY_LONGLONG: f[0] = 113 #"q" * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" # <<<<<<<<<<<<<< @@ -4585,7 +4523,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":836 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":836 * elif t == NPY_LONGLONG: f[0] = 113 #"q" * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" * elif t == NPY_FLOAT: f[0] = 102 #"f" # <<<<<<<<<<<<<< @@ -4603,7 +4541,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":837 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":837 * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" * elif t == NPY_FLOAT: f[0] = 102 #"f" * elif t == NPY_DOUBLE: f[0] = 100 #"d" # <<<<<<<<<<<<<< @@ -4621,7 +4559,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":838 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":838 * elif t == NPY_FLOAT: f[0] = 102 #"f" * elif t == NPY_DOUBLE: f[0] = 100 #"d" * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" # <<<<<<<<<<<<<< @@ -4639,7 +4577,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":839 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":839 * elif t == NPY_DOUBLE: f[0] = 100 #"d" * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf # <<<<<<<<<<<<<< @@ -4659,7 +4597,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":840 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":840 * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd # <<<<<<<<<<<<<< @@ -4679,7 +4617,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":841 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":841 * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd * elif t == NPY_CLONGDOUBLE: f[0] = 90; f[1] = 103; f += 1 # Zg # <<<<<<<<<<<<<< @@ -4699,7 +4637,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":842 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":842 * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd * elif t == NPY_CLONGDOUBLE: f[0] = 90; f[1] = 103; f += 1 # Zg * elif t == NPY_OBJECT: f[0] = 79 #"O" # <<<<<<<<<<<<<< @@ -4717,7 +4655,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":844 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":844 * elif t == NPY_OBJECT: f[0] = 79 #"O" * else: * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) # <<<<<<<<<<<<<< @@ -4741,7 +4679,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx } __pyx_L15:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":845 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":845 * else: * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) * f += 1 # <<<<<<<<<<<<<< @@ -4750,7 +4688,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ __pyx_v_f = (__pyx_v_f + 1); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":820 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":820 * offset[0] += child.itemsize * * if not PyDataType_HASFIELDS(child): # <<<<<<<<<<<<<< @@ -4760,7 +4698,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L13; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":849 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":849 * # Cython ignores struct boundary information ("T{...}"), * # so don't output it * f = _util_dtypestring(child, f, end, offset) # <<<<<<<<<<<<<< @@ -4773,7 +4711,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx } __pyx_L13:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":794 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":794 * cdef tuple fields * * for childname in descr.names: # <<<<<<<<<<<<<< @@ -4783,7 +4721,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx } __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":850 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":850 * # so don't output it * f = _util_dtypestring(child, f, end, offset) * return f # <<<<<<<<<<<<<< @@ -4793,7 +4731,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_r = __pyx_v_f; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":785 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":785 * return PyArray_MultiIterNew(5, a, b, c, d, e) * * cdef inline char* _util_dtypestring(dtype descr, char* f, char* end, int* offset) except NULL: # <<<<<<<<<<<<<< @@ -4819,7 +4757,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":966 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":966 * * * cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<< @@ -4836,7 +4774,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a __Pyx_RefNannySetupContext("set_array_base", 0); __Pyx_TraceCall("set_array_base", __pyx_f[1], 966, 0, __PYX_ERR(1, 966, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":968 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":968 * cdef inline void set_array_base(ndarray arr, object base): * cdef PyObject* baseptr * if base is None: # <<<<<<<<<<<<<< @@ -4847,7 +4785,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a __pyx_t_2 = (__pyx_t_1 != 0); if (__pyx_t_2) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":969 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":969 * cdef PyObject* baseptr * if base is None: * baseptr = NULL # <<<<<<<<<<<<<< @@ -4856,7 +4794,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a */ __pyx_v_baseptr = NULL; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":968 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":968 * cdef inline void set_array_base(ndarray arr, object base): * cdef PyObject* baseptr * if base is None: # <<<<<<<<<<<<<< @@ -4866,7 +4804,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a goto __pyx_L3; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":971 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":971 * baseptr = NULL * else: * Py_INCREF(base) # important to do this before decref below! # <<<<<<<<<<<<<< @@ -4876,7 +4814,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a /*else*/ { Py_INCREF(__pyx_v_base); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":972 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":972 * else: * Py_INCREF(base) # important to do this before decref below! * baseptr = base # <<<<<<<<<<<<<< @@ -4887,7 +4825,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a } __pyx_L3:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":973 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":973 * Py_INCREF(base) # important to do this before decref below! * baseptr = base * Py_XDECREF(arr.base) # <<<<<<<<<<<<<< @@ -4896,7 +4834,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a */ Py_XDECREF(__pyx_v_arr->base); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":974 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":974 * baseptr = base * Py_XDECREF(arr.base) * arr.base = baseptr # <<<<<<<<<<<<<< @@ -4905,7 +4843,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a */ __pyx_v_arr->base = __pyx_v_baseptr; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":966 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":966 * * * cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<< @@ -4916,13 +4854,13 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a /* function exit code */ goto __pyx_L0; __pyx_L1_error:; - __Pyx_WriteUnraisable("numpy.set_array_base", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0); + __Pyx_WriteUnraisable("numpy.set_array_base", __pyx_clineno, __pyx_lineno, __pyx_filename, 0, 0); __pyx_L0:; __Pyx_TraceReturn(Py_None, 0); __Pyx_RefNannyFinishContext(); } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":976 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":976 * arr.base = baseptr * * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<< @@ -4938,7 +4876,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py __Pyx_RefNannySetupContext("get_array_base", 0); __Pyx_TraceCall("get_array_base", __pyx_f[1], 976, 0, __PYX_ERR(1, 976, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":977 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":977 * * cdef inline object get_array_base(ndarray arr): * if arr.base is NULL: # <<<<<<<<<<<<<< @@ -4948,7 +4886,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py __pyx_t_1 = ((__pyx_v_arr->base == NULL) != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":978 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":978 * cdef inline object get_array_base(ndarray arr): * if arr.base is NULL: * return None # <<<<<<<<<<<<<< @@ -4960,7 +4898,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py __pyx_r = Py_None; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":977 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":977 * * cdef inline object get_array_base(ndarray arr): * if arr.base is NULL: # <<<<<<<<<<<<<< @@ -4969,7 +4907,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":980 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":980 * return None * else: * return arr.base # <<<<<<<<<<<<<< @@ -4983,7 +4921,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py goto __pyx_L0; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":976 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":976 * arr.base = baseptr * * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<< @@ -5002,7 +4940,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":985 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":985 * # Versions of the import_* functions which are more suitable for * # Cython code. * cdef inline int import_array() except -1: # <<<<<<<<<<<<<< @@ -5025,7 +4963,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_RefNannySetupContext("import_array", 0); __Pyx_TraceCall("import_array", __pyx_f[1], 985, 0, __PYX_ERR(1, 985, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 * # Cython code. * cdef inline int import_array() except -1: * try: # <<<<<<<<<<<<<< @@ -5041,7 +4979,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_XGOTREF(__pyx_t_3); /*try:*/ { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":987 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":987 * cdef inline int import_array() except -1: * try: * _import_array() # <<<<<<<<<<<<<< @@ -5050,7 +4988,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { */ __pyx_t_4 = _import_array(); if (unlikely(__pyx_t_4 == -1)) __PYX_ERR(1, 987, __pyx_L3_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 * # Cython code. * cdef inline int import_array() except -1: * try: # <<<<<<<<<<<<<< @@ -5061,11 +4999,11 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0; __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0; __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0; - goto __pyx_L8_try_end; + goto __pyx_L10_try_end; __pyx_L3_error:; __Pyx_PyThreadState_assign - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":988 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":988 * try: * _import_array() * except Exception: # <<<<<<<<<<<<<< @@ -5080,7 +5018,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_GOTREF(__pyx_t_6); __Pyx_GOTREF(__pyx_t_7); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":989 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":989 * _import_array() * except Exception: * raise ImportError("numpy.core.multiarray failed to import") # <<<<<<<<<<<<<< @@ -5096,7 +5034,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { goto __pyx_L5_except_error; __pyx_L5_except_error:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 * # Cython code. * cdef inline int import_array() except -1: * try: # <<<<<<<<<<<<<< @@ -5109,10 +5047,10 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_XGIVEREF(__pyx_t_3); 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__pyx_L5_except_error:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":992 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":992 * * cdef inline int import_umath() except -1: * try: # <<<<<<<<<<<<<< @@ -5243,10 +5181,10 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) { __Pyx_XGIVEREF(__pyx_t_3); __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3); goto __pyx_L1_error; - __pyx_L8_try_end:; + __pyx_L10_try_end:; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":991 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":991 * raise ImportError("numpy.core.multiarray failed to import") * * cdef inline int import_umath() except -1: # <<<<<<<<<<<<<< @@ -5270,7 +5208,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) { return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":997 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":997 * raise ImportError("numpy.core.umath failed to import") * * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<< @@ -5293,7 +5231,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) { __Pyx_RefNannySetupContext("import_ufunc", 0); 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#if CYTHON_FAST_PYCCALL @@ -6838,7 +6689,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec #endif /* ExtTypeTest */ - static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; @@ -6851,7 +6702,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec } /* PyErrFetchRestore */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; tmp_type = tstate->curexc_type; @@ -6875,7 +6726,7 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject #endif /* RaiseException */ - #if PY_MAJOR_VERSION < 3 + #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { __Pyx_PyThreadState_declare @@ -7038,7 +6889,7 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject #endif /* WriteUnraisableException */ - static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, + static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename, int full_traceback, CYTHON_UNUSED int nogil) { PyObject *old_exc, *old_val, *old_tb; @@ -7080,25 +6931,25 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject } /* RaiseTooManyValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { + static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } /* RaiseNeedMoreValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { + static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } /* RaiseNoneIterError */ - static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { + static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } /* SaveResetException */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { *type = tstate->exc_type; *value = tstate->exc_value; @@ -7122,7 +6973,7 @@ static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject #endif /* PyErrExceptionMatches */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) { PyObject *exc_type = tstate->curexc_type; if (exc_type == err) return 1; @@ -7132,7 +6983,7 @@ static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tsta #endif /* GetException */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { #else static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { @@ -7193,7 +7044,7 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) } /* Import */ - static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { + static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { PyObject *empty_list = 0; PyObject *module = 0; PyObject *global_dict = 0; @@ -7267,7 +7118,7 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) } /* ImportFrom */ - static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { + static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { PyErr_Format(PyExc_ImportError, @@ -7280,42 +7131,8 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) return value; } -/* CLineInTraceback */ - static int __Pyx_CLineForTraceback(int c_line) { -#ifdef CYTHON_CLINE_IN_TRACEBACK - return ((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0; -#else - PyObject **cython_runtime_dict; - PyObject *use_cline; - cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); - if (unlikely(!cython_runtime_dict)) { - PyObject *ptype, *pvalue, *ptraceback; - PyObject *use_cline_obj; - PyErr_Fetch(&ptype, &pvalue, &ptraceback); - use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); - if (use_cline_obj) { - use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; - Py_DECREF(use_cline_obj); - } else { - use_cline = NULL; - } - PyErr_Restore(ptype, pvalue, ptraceback); - } else { - use_cline = PyDict_GetItem(*_PyObject_GetDictPtr(__pyx_cython_runtime), __pyx_n_s_cline_in_traceback); - } - if (!use_cline) { - c_line = 0; - PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); - } - else if (PyObject_Not(use_cline) != 0) { - c_line = 0; - } - return c_line; -#endif -} - /* CodeObjectCache */ - static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; @@ -7395,7 +7212,7 @@ static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { } /* AddTraceback */ - #include "compile.h" + #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( @@ -7454,15 +7271,12 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyFrameObject *py_frame = 0; - if (c_line) { - c_line = __Pyx_CLineForTraceback(c_line); - } - py_code = __pyx_find_code_object(c_line ? -c_line : py_line); + py_code = __pyx_find_code_object(c_line ? c_line : py_line); if (!py_code) { py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) goto bad; - __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); + __pyx_insert_code_object(c_line ? c_line : py_line, py_code); } py_frame = PyFrame_New( PyThreadState_GET(), /*PyThreadState *tstate,*/ @@ -7499,8 +7313,8 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif - /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { + /* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -7531,7 +7345,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -7562,7 +7376,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); @@ -7582,7 +7396,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -7717,7 +7531,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); @@ -7737,7 +7551,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -7872,7 +7686,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* CIntFromPyVerify */ - #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) @@ -7894,7 +7708,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -7925,7 +7739,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -8114,7 +7928,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -8145,7 +7959,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -8334,7 +8148,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CheckBinaryVersion */ - static int __Pyx_check_binary_version(void) { + static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); @@ -8350,7 +8164,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* FunctionExport */ - static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig) { + static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig) { PyObject *d = 0; PyObject *cobj = 0; union { @@ -8387,7 +8201,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* ModuleImport */ - #ifndef __PYX_HAVE_RT_ImportModule + #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; @@ -8405,7 +8219,7 @@ static PyObject *__Pyx_ImportModule(const char *name) { #endif /* TypeImport */ - #ifndef __PYX_HAVE_RT_ImportType + #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) @@ -8470,7 +8284,7 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class #endif /* InitStrings */ - static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { @@ -8495,8 +8309,6 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class #endif if (!*t->p) return -1; - if (PyObject_Hash(*t->p) == -1) - PyErr_Clear(); ++t; } return 0; @@ -8505,11 +8317,11 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); } -static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { +static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } -static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { +static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if CYTHON_COMPILING_IN_CPYTHON && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) if ( #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII diff --git a/ccd/models/tmask.pyx b/ccd/models/tmask.pyx index 081aefe..1e677f9 100644 --- a/ccd/models/tmask.pyx +++ b/ccd/models/tmask.pyx @@ -1,11 +1,11 @@ # cython: profile=True -import logging +#import logging import numpy as np cimport numpy as np from ccd.models.robust_fit import RLM -log = logging.getLogger(__name__) +#log = logging.getLogger(__name__) cdef np.ndarray[STYPE_t, ndim=2] tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, FTYPE_t avg_days_yr): diff --git a/ccd/procedures.c b/ccd/procedures.c index 4bcd7b3..17e3787 100644 --- a/ccd/procedures.c +++ b/ccd/procedures.c @@ -1,18 +1,14 @@ -/* Generated by Cython 0.26 */ +/* Generated by Cython 0.25.2 */ /* BEGIN: Cython Metadata { "distutils": { "depends": [ - "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h", - "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h" + "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h", + "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h" ], "include_dirs": [ - "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include" - ], - "name": "ccd.procedures", - "sources": [ - "ccd/procedures.pyx" + "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include" ] }, "module_name": "ccd.procedures" @@ -26,7 +22,7 @@ END: Cython Metadata */ #elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) #error Cython requires Python 2.6+ or Python 3.2+. #else -#define CYTHON_ABI "0_26" +#define CYTHON_ABI "0_25_2" #include #ifndef offsetof #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) @@ -48,7 +44,6 @@ END: Cython Metadata */ #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif -#define __PYX_COMMA , #ifndef HAVE_LONG_LONG #if PY_VERSION_HEX >= 0x03030000 || (PY_MAJOR_VERSION == 2 && PY_VERSION_HEX >= 0x02070000) #define HAVE_LONG_LONG @@ -201,20 +196,16 @@ END: Cython Metadata */ #ifndef Py_TPFLAGS_HAVE_FINALIZE #define Py_TPFLAGS_HAVE_FINALIZE 0 #endif -#if PY_VERSION_HEX < 0x030700A0 || !defined(METH_FASTCALL) - #ifndef METH_FASTCALL - #define METH_FASTCALL 0x80 - #endif - typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, Py_ssize_t nargs); - typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject **args, - Py_ssize_t nargs, PyObject *kwnames); +#ifndef METH_FASTCALL + #define METH_FASTCALL 0x80 + typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, + Py_ssize_t nargs, PyObject *kwnames); #else #define __Pyx_PyCFunctionFast _PyCFunctionFast - #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords #endif #if CYTHON_FAST_PYCCALL #define __Pyx_PyFastCFunction_Check(func)\ - ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))))) + ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST))))) #else #define __Pyx_PyFastCFunction_Check(func) 0 #endif @@ -341,12 +332,6 @@ END: Cython Metadata */ #else #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) #endif -#ifndef __has_attribute - #define __has_attribute(x) 0 -#endif -#ifndef __has_cpp_attribute - #define __has_cpp_attribute(x) 0 -#endif #if CYTHON_USE_ASYNC_SLOTS #if PY_VERSION_HEX >= 0x030500B1 #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods @@ -401,35 +386,6 @@ END: Cython Metadata */ # endif #endif #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) -#ifdef _MSC_VER - #ifndef _MSC_STDINT_H_ - #if _MSC_VER < 1300 - typedef unsigned char uint8_t; - typedef unsigned int uint32_t; - #else - typedef unsigned __int8 uint8_t; - typedef unsigned __int32 uint32_t; - #endif - #endif -#else - #include -#endif -#ifndef CYTHON_FALLTHROUGH - #ifdef __cplusplus - #if __has_cpp_attribute(fallthrough) - #define CYTHON_FALLTHROUGH [[fallthrough]] - #elif __has_cpp_attribute(clang::fallthrough) - #define CYTHON_FALLTHROUGH [[clang::fallthrough]] - #endif - #endif - #ifndef CYTHON_FALLTHROUGH - #if __has_attribute(fallthrough) || (defined(__GNUC__) && defined(__attribute__)) - #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) - #else - #define CYTHON_FALLTHROUGH - #endif - #endif -#endif #ifndef CYTHON_INLINE #if defined(__clang__) @@ -538,8 +494,8 @@ typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* enc #else #define __Pyx_sst_abs(value) ((value<0) ? -value : value) #endif -static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); -static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); +static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); +static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) #define __Pyx_PyBytes_FromString PyBytes_FromString @@ -552,11 +508,8 @@ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize #endif -#define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) @@ -678,12 +631,10 @@ static int __Pyx_init_sys_getdefaultencoding_params(void) { #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ */ -static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } static PyObject *__pyx_m; static PyObject *__pyx_d; static PyObject *__pyx_b; -static PyObject *__pyx_cython_runtime; static PyObject *__pyx_empty_tuple; static PyObject *__pyx_empty_bytes; static PyObject *__pyx_empty_unicode; @@ -759,7 +710,7 @@ typedef struct { } __Pyx_BufFmt_Context; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":725 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":725 * # in Cython to enable them only on the right systems. * * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< @@ -768,7 +719,7 @@ typedef struct { */ typedef npy_int8 __pyx_t_5numpy_int8_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":726 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":726 * * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< @@ -777,7 +728,7 @@ typedef npy_int8 __pyx_t_5numpy_int8_t; */ typedef npy_int16 __pyx_t_5numpy_int16_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":727 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":727 * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< @@ -786,7 +737,7 @@ typedef npy_int16 __pyx_t_5numpy_int16_t; */ typedef npy_int32 __pyx_t_5numpy_int32_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":728 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":728 * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< @@ -795,7 +746,7 @@ typedef npy_int32 __pyx_t_5numpy_int32_t; */ typedef npy_int64 __pyx_t_5numpy_int64_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":732 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":732 * #ctypedef npy_int128 int128_t * * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< @@ -804,7 +755,7 @@ typedef npy_int64 __pyx_t_5numpy_int64_t; */ typedef npy_uint8 __pyx_t_5numpy_uint8_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":733 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":733 * * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< @@ -813,7 +764,7 @@ typedef npy_uint8 __pyx_t_5numpy_uint8_t; */ typedef npy_uint16 __pyx_t_5numpy_uint16_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":734 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":734 * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< @@ -822,7 +773,7 @@ typedef npy_uint16 __pyx_t_5numpy_uint16_t; */ typedef npy_uint32 __pyx_t_5numpy_uint32_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":735 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":735 * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< @@ -831,7 +782,7 @@ typedef npy_uint32 __pyx_t_5numpy_uint32_t; */ typedef npy_uint64 __pyx_t_5numpy_uint64_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":739 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":739 * #ctypedef npy_uint128 uint128_t * * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< @@ -840,7 +791,7 @@ typedef npy_uint64 __pyx_t_5numpy_uint64_t; */ typedef npy_float32 __pyx_t_5numpy_float32_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":740 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":740 * * ctypedef npy_float32 float32_t * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< @@ -849,7 +800,7 @@ typedef npy_float32 __pyx_t_5numpy_float32_t; */ typedef npy_float64 __pyx_t_5numpy_float64_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":749 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":749 * # The int types are mapped a bit surprising -- * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t # <<<<<<<<<<<<<< @@ -858,7 +809,7 @@ typedef npy_float64 __pyx_t_5numpy_float64_t; */ typedef npy_long __pyx_t_5numpy_int_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":750 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":750 * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< @@ -867,7 +818,7 @@ typedef npy_long __pyx_t_5numpy_int_t; */ typedef npy_longlong __pyx_t_5numpy_long_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":751 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":751 * ctypedef npy_long int_t * ctypedef npy_longlong long_t * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< @@ -876,7 +827,7 @@ typedef npy_longlong __pyx_t_5numpy_long_t; */ typedef npy_longlong __pyx_t_5numpy_longlong_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":753 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":753 * ctypedef npy_longlong longlong_t * * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<< @@ -885,7 +836,7 @@ typedef npy_longlong __pyx_t_5numpy_longlong_t; */ typedef npy_ulong __pyx_t_5numpy_uint_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":754 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":754 * * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<< @@ -894,7 +845,7 @@ typedef npy_ulong __pyx_t_5numpy_uint_t; */ typedef npy_ulonglong __pyx_t_5numpy_ulong_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":755 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":755 * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<< @@ -903,7 +854,7 @@ typedef npy_ulonglong __pyx_t_5numpy_ulong_t; */ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":757 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":757 * ctypedef npy_ulonglong ulonglong_t * * ctypedef npy_intp intp_t # <<<<<<<<<<<<<< @@ -912,7 +863,7 @@ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; */ typedef npy_intp __pyx_t_5numpy_intp_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":758 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":758 * * ctypedef npy_intp intp_t * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<< @@ -921,7 +872,7 @@ typedef npy_intp __pyx_t_5numpy_intp_t; */ typedef npy_uintp __pyx_t_5numpy_uintp_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":760 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":760 * ctypedef npy_uintp uintp_t * * ctypedef npy_double float_t # <<<<<<<<<<<<<< @@ -930,7 +881,7 @@ typedef npy_uintp __pyx_t_5numpy_uintp_t; */ typedef npy_double __pyx_t_5numpy_float_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":761 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":761 * * ctypedef npy_double float_t * ctypedef npy_double double_t # <<<<<<<<<<<<<< @@ -939,7 +890,7 @@ typedef npy_double __pyx_t_5numpy_float_t; */ typedef npy_double __pyx_t_5numpy_double_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":762 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":762 * ctypedef npy_double float_t * ctypedef npy_double double_t * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<< @@ -1046,7 +997,7 @@ static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(do /*--- Type declarations ---*/ -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":764 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":764 * ctypedef npy_longdouble longdouble_t * * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<< @@ -1055,7 +1006,7 @@ static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(do */ typedef npy_cfloat __pyx_t_5numpy_cfloat_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":765 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":765 * * ctypedef npy_cfloat cfloat_t * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<< @@ -1064,7 +1015,7 @@ typedef npy_cfloat __pyx_t_5numpy_cfloat_t; */ typedef npy_cdouble __pyx_t_5numpy_cdouble_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":766 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":766 * ctypedef npy_cfloat cfloat_t * ctypedef npy_cdouble cdouble_t * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<< @@ -1073,7 +1024,7 @@ typedef npy_cdouble __pyx_t_5numpy_cdouble_t; */ typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":768 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":768 * ctypedef npy_clongdouble clongdouble_t * * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<< @@ -1336,7 +1287,7 @@ static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ #else #define __Pyx_TraceDeclarations #define __Pyx_TraceFrameInit(codeobj) - #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if ((1)); else goto_error; + #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if (1); else goto_error; #define __Pyx_TraceException() #define __Pyx_TraceReturn(result, nogil) #endif @@ -1394,7 +1345,7 @@ static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ } #endif #else - #define __Pyx_TraceLine(lineno, nogil, goto_error) if ((1)); else goto_error; + #define __Pyx_TraceLine(lineno, nogil, goto_error) if (1); else goto_error; #endif /* GetModuleGlobalName.proto */ @@ -1425,6 +1376,12 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) #endif +/* Import.proto */ +static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); + +/* ImportFrom.proto */ +static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); + /* PyObjectCallMethO.proto */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); @@ -1479,7 +1436,7 @@ static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info); static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts); static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, __Pyx_BufFmt_StackElem* stack, - __Pyx_TypeInfo* type); + __Pyx_TypeInfo* type); // PROTO /* DictGetItem.proto */ #if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY @@ -1502,12 +1459,6 @@ static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) #endif -/* Import.proto */ -static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); - -/* ImportFrom.proto */ -static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); - /* ExtTypeTest.proto */ static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); @@ -1619,9 +1570,6 @@ static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tsta #define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err) #endif -/* CLineInTraceback.proto */ -static int __Pyx_CLineForTraceback(int c_line); - /* CodeObjectCache.proto */ typedef struct { PyCodeObject* code_object; @@ -1946,6 +1894,7 @@ static const char __pyx_k_array[] = "array"; static const char __pyx_k_clear[] = "clear"; static const char __pyx_k_dates[] = "dates"; static const char __pyx_k_debug[] = "debug"; +static const char __pyx_k_lasso[] = "lasso"; static const char __pyx_k_numpy[] = "numpy"; static const char __pyx_k_range[] = "range"; static const char __pyx_k_shape[] = "shape"; @@ -2036,9 +1985,7 @@ static const char __pyx_k_observation_count[] = "observation_count"; static const char __pyx_k_SNOW_PCT_THRESHOLD[] = "SNOW_PCT_THRESHOLD"; static const char __pyx_k_Variogram_values_s[] = "Variogram values: %s"; static const char __pyx_k_adjusted_variogram[] = "adjusted_variogram"; -static const char __pyx_k_ccd_procedures_pyx[] = "ccd/procedures.pyx"; static const char __pyx_k_change_probability[] = "change_probability"; -static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; static const char __pyx_k_standard_procedure[] = "standard_procedure"; static const char __pyx_k_CLEAR_PCT_THRESHOLD[] = "CLEAR_PCT_THRESHOLD"; static const char __pyx_k_Extend_change_model[] = "Extend change model"; @@ -2071,6 +2018,7 @@ static const char __pyx_k_Initialize_for_change_model_s[] = "Initialize for chan static const char __pyx_k_Previous_break_s_model_window_s[] = "Previous break: %s model window: %s"; static const char __pyx_k_Processing_mask_initial_count_s[] = "Processing mask initial count: %s"; static const char __pyx_k_Retrain_models_model_span_s_fit[] = "Retrain models, model_span: %s fit_span: %s"; +static const char __pyx_k_home_caustin_workspace_lcmap_py[] = "/home/caustin/workspace/lcmap-pyccd/ccd/procedures.pyx"; static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import"; static const char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; static const char __pyx_k_Considering_index_s_using_peek_w[] = "Considering index: %s using peek window: %s"; @@ -2159,13 +2107,11 @@ static PyObject *__pyx_n_s_ccd_change; static PyObject *__pyx_n_s_ccd_math_utils; static PyObject *__pyx_n_s_ccd_models; static PyObject *__pyx_n_s_ccd_procedures; -static PyObject *__pyx_kp_s_ccd_procedures_pyx; static PyObject *__pyx_kp_s_change_detection_complete; static PyObject *__pyx_n_s_change_magnitude; static PyObject *__pyx_n_s_change_probability; static PyObject *__pyx_n_s_clear; static PyObject *__pyx_n_s_clear_thresh; -static PyObject *__pyx_n_s_cline_in_traceback; static PyObject *__pyx_n_s_curve_qa; static PyObject *__pyx_n_s_dates; static PyObject *__pyx_n_s_debug; @@ -2187,10 +2133,12 @@ static PyObject *__pyx_n_s_fitter_fn; static PyObject *__pyx_n_s_format; static PyObject *__pyx_n_s_func; static PyObject *__pyx_n_s_getLogger; +static PyObject *__pyx_kp_s_home_caustin_workspace_lcmap_py; static PyObject *__pyx_n_s_import; static PyObject *__pyx_n_s_insufficient_clear_filter; static PyObject *__pyx_n_s_insufficient_clear_procedure; static PyObject *__pyx_n_s_kelvin_to_celsius; +static PyObject *__pyx_n_s_lasso; static PyObject *__pyx_n_s_ldebug; static PyObject *__pyx_n_s_log; static PyObject *__pyx_n_s_logging; @@ -2325,9 +2273,7 @@ static PyObject *__pyx_pw_3ccd_10procedures_1fit_procedure(PyObject *__pyx_self, const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args); switch (pos_args) { case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); - CYTHON_FALLTHROUGH; case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); - CYTHON_FALLTHROUGH; case 0: break; default: goto __pyx_L5_argtuple_error; } @@ -2336,7 +2282,6 @@ static PyObject *__pyx_pw_3ccd_10procedures_1fit_procedure(PyObject *__pyx_self, case 0: if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_quality)) != 0)) kw_args--; else goto __pyx_L5_argtuple_error; - CYTHON_FALLTHROUGH; case 1: if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_proc_params)) != 0)) kw_args--; else { @@ -2802,15 +2747,10 @@ static PyObject *__pyx_pw_3ccd_10procedures_3permanent_snow_procedure(PyObject * const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args); switch (pos_args) { case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4); - CYTHON_FALLTHROUGH; case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); - CYTHON_FALLTHROUGH; case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); - CYTHON_FALLTHROUGH; case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); - CYTHON_FALLTHROUGH; case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); - CYTHON_FALLTHROUGH; case 0: break; default: goto __pyx_L5_argtuple_error; } @@ -2819,25 +2759,21 @@ static PyObject *__pyx_pw_3ccd_10procedures_3permanent_snow_procedure(PyObject * case 0: if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_dates)) != 0)) kw_args--; else goto __pyx_L5_argtuple_error; - CYTHON_FALLTHROUGH; case 1: if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_observations)) != 0)) kw_args--; else { __Pyx_RaiseArgtupleInvalid("permanent_snow_procedure", 1, 5, 5, 1); __PYX_ERR(0, 96, __pyx_L3_error) } - CYTHON_FALLTHROUGH; case 2: if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_fitter_fn)) != 0)) kw_args--; else { __Pyx_RaiseArgtupleInvalid("permanent_snow_procedure", 1, 5, 5, 2); __PYX_ERR(0, 96, __pyx_L3_error) } - CYTHON_FALLTHROUGH; case 3: if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_quality)) != 0)) kw_args--; else { __Pyx_RaiseArgtupleInvalid("permanent_snow_procedure", 1, 5, 5, 3); __PYX_ERR(0, 96, __pyx_L3_error) } - CYTHON_FALLTHROUGH; case 4: if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_proc_params)) != 0)) kw_args--; else { @@ -2878,6 +2814,8 @@ static PyObject *__pyx_pw_3ccd_10procedures_3permanent_snow_procedure(PyObject * } static PyObject *__pyx_pf_3ccd_10procedures_2permanent_snow_procedure(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_dates, PyObject *__pyx_v_observations, PyObject *__pyx_v_fitter_fn, PyObject *__pyx_v_quality, PyObject *__pyx_v_proc_params) { + PyObject *__pyx_v_Lasso = NULL; + PyObject *__pyx_v_lasso = NULL; PyObject *__pyx_v_meow_size = NULL; PyObject *__pyx_v_curve_qa = NULL; PyObject *__pyx_v_avg_days_yr = NULL; @@ -2907,80 +2845,121 @@ static PyObject *__pyx_pf_3ccd_10procedures_2permanent_snow_procedure(CYTHON_UNU __Pyx_RefNannySetupContext("permanent_snow_procedure", 0); __Pyx_TraceCall("permanent_snow_procedure", __pyx_f[0], 96, 0, __PYX_ERR(0, 96, __pyx_L1_error)); + /* "ccd/procedures.pyx":120 + * for model fitting + * """ + * from sklearn.linear_model import Lasso # <<<<<<<<<<<<<< + * lasso = Lasso(max_iter=proc_params['LASSO_MAX_ITER']) + * + */ + __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 120, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + __Pyx_INCREF(__pyx_n_s_Lasso); + __Pyx_GIVEREF(__pyx_n_s_Lasso); + PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_Lasso); + __pyx_t_2 = __Pyx_Import(__pyx_n_s_sklearn_linear_model, __pyx_t_1, -1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 120, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_2); + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_2, __pyx_n_s_Lasso); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 120, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + __Pyx_INCREF(__pyx_t_1); + __pyx_v_Lasso = __pyx_t_1; + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; + /* "ccd/procedures.pyx":121 * """ + * from sklearn.linear_model import Lasso + * lasso = Lasso(max_iter=proc_params['LASSO_MAX_ITER']) # <<<<<<<<<<<<<< + * + * # TODO do this better + */ + __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 121, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_2); + __pyx_t_1 = PyObject_GetItem(__pyx_v_proc_params, __pyx_n_s_LASSO_MAX_ITER); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 121, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + if (PyDict_SetItem(__pyx_t_2, __pyx_n_s_max_iter, __pyx_t_1) < 0) __PYX_ERR(0, 121, __pyx_L1_error) + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + __pyx_t_1 = __Pyx_PyObject_Call(__pyx_v_Lasso, __pyx_empty_tuple, __pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 121, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; + __pyx_v_lasso = __pyx_t_1; + __pyx_t_1 = 0; 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else { - __Pyx_RaiseArgtupleInvalid("insufficient_clear_procedure", 1, 5, 5, 2); __PYX_ERR(0, 154, __pyx_L3_error) + __Pyx_RaiseArgtupleInvalid("insufficient_clear_procedure", 1, 5, 5, 2); __PYX_ERR(0, 157, __pyx_L3_error) } - CYTHON_FALLTHROUGH; case 3: if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_quality)) != 0)) kw_args--; else { - __Pyx_RaiseArgtupleInvalid("insufficient_clear_procedure", 1, 5, 5, 3); __PYX_ERR(0, 154, __pyx_L3_error) + __Pyx_RaiseArgtupleInvalid("insufficient_clear_procedure", 1, 5, 5, 3); __PYX_ERR(0, 157, __pyx_L3_error) } - CYTHON_FALLTHROUGH; case 4: if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_proc_params)) != 0)) kw_args--; else { - __Pyx_RaiseArgtupleInvalid("insufficient_clear_procedure", 1, 5, 5, 4); __PYX_ERR(0, 154, __pyx_L3_error) + __Pyx_RaiseArgtupleInvalid("insufficient_clear_procedure", 1, 5, 5, 4); __PYX_ERR(0, 157, __pyx_L3_error) } } if (unlikely(kw_args > 0)) { - if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "insufficient_clear_procedure") < 0)) __PYX_ERR(0, 154, __pyx_L3_error) + if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "insufficient_clear_procedure") < 0)) __PYX_ERR(0, 157, __pyx_L3_error) } } else if (PyTuple_GET_SIZE(__pyx_args) != 5) { goto __pyx_L5_argtuple_error; 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PyObject *__pyx_v_meow_size = NULL; PyObject *__pyx_v_curve_qa = NULL; PyObject *__pyx_v_avg_days_yr = NULL; @@ -3649,82 +3626,123 @@ static PyObject *__pyx_pf_3ccd_10procedures_4insufficient_clear_procedure(CYTHON PyObject *__pyx_t_10 = NULL; __Pyx_TraceFrameInit(__pyx_codeobj__4) __Pyx_RefNannySetupContext("insufficient_clear_procedure", 0); - __Pyx_TraceCall("insufficient_clear_procedure", __pyx_f[0], 154, 0, __PYX_ERR(0, 154, __pyx_L1_error)); + __Pyx_TraceCall("insufficient_clear_procedure", __pyx_f[0], 157, 0, __PYX_ERR(0, 157, __pyx_L1_error)); - /* "ccd/procedures.pyx":179 + /* "ccd/procedures.pyx":182 * """ + * + * from sklearn.linear_model import Lasso # <<<<<<<<<<<<<< + * lasso = Lasso(max_iter=proc_params['LASSO_MAX_ITER']) + * + */ + __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 182, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + __Pyx_INCREF(__pyx_n_s_Lasso); + __Pyx_GIVEREF(__pyx_n_s_Lasso); + PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_Lasso); + __pyx_t_2 = __Pyx_Import(__pyx_n_s_sklearn_linear_model, __pyx_t_1, -1); 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__pyx_t_1 = 0; + __pyx_t_1 = __Pyx_PyObject_Call(__pyx_v_Lasso, __pyx_empty_tuple, __pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 183, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; + __pyx_v_lasso = __pyx_t_1; + __pyx_t_1 = 0; + + /* "ccd/procedures.pyx":186 + * * # TODO do this better * meow_size = proc_params['MEOW_SIZE'] # <<<<<<<<<<<<<< * curve_qa = proc_params['CURVE_QA']['INSUF_CLEAR'] * avg_days_yr = proc_params['AVG_DAYS_YR'] */ - __pyx_t_1 = PyObject_GetItem(__pyx_v_proc_params, __pyx_n_s_MEOW_SIZE); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 179, __pyx_L1_error) + __pyx_t_1 = PyObject_GetItem(__pyx_v_proc_params, __pyx_n_s_MEOW_SIZE); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 186, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); __pyx_v_meow_size = __pyx_t_1; __pyx_t_1 = 0; - /* "ccd/procedures.pyx":180 + /* "ccd/procedures.pyx":187 * # TODO do this better * meow_size = proc_params['MEOW_SIZE'] * curve_qa = proc_params['CURVE_QA']['INSUF_CLEAR'] # <<<<<<<<<<<<<< * avg_days_yr = proc_params['AVG_DAYS_YR'] * fit_max_iter = proc_params['LASSO_MAX_ITER'] */ - __pyx_t_1 = PyObject_GetItem(__pyx_v_proc_params, __pyx_n_s_CURVE_QA); 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} - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":217 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":217 * * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): # <<<<<<<<<<<<<< @@ -12463,7 +12477,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = __pyx_t_2; __pyx_L6_bool_binop_done:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 * copy_shape = 0 * * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -12472,7 +12486,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":218 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":218 * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): * raise ValueError(u"ndarray is not C contiguous") # <<<<<<<<<<<<<< @@ -12485,7 +12499,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __PYX_ERR(1, 218, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 * copy_shape = 0 * * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -12494,7 +12508,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 * raise ValueError(u"ndarray is not C contiguous") * * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -12508,7 +12522,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P goto __pyx_L9_bool_binop_done; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":221 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":221 * * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): # <<<<<<<<<<<<<< @@ -12519,7 +12533,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = __pyx_t_2; __pyx_L9_bool_binop_done:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 * raise ValueError(u"ndarray is not C contiguous") * * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -12528,7 +12542,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":222 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":222 * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): * raise ValueError(u"ndarray is not Fortran contiguous") # <<<<<<<<<<<<<< @@ -12541,7 +12555,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __PYX_ERR(1, 222, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":220 * raise ValueError(u"ndarray is not C contiguous") * * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -12550,7 +12564,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":224 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":224 * raise ValueError(u"ndarray is not Fortran contiguous") * * info.buf = PyArray_DATA(self) # <<<<<<<<<<<<<< @@ -12559,7 +12573,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->buf = PyArray_DATA(__pyx_v_self); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":225 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":225 * * info.buf = PyArray_DATA(self) * info.ndim = ndim # <<<<<<<<<<<<<< @@ -12568,7 +12582,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->ndim = __pyx_v_ndim; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 * info.buf = PyArray_DATA(self) * info.ndim = ndim * if copy_shape: # <<<<<<<<<<<<<< @@ -12578,7 +12592,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = (__pyx_v_copy_shape != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":229 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":229 * # Allocate new buffer for strides and shape info. * # This is allocated as one block, strides first. * info.strides = stdlib.malloc(sizeof(Py_ssize_t) * ndim * 2) # <<<<<<<<<<<<<< @@ -12587,7 +12601,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->strides = ((Py_ssize_t *)malloc((((sizeof(Py_ssize_t)) * ((size_t)__pyx_v_ndim)) * 2))); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":230 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":230 * # This is allocated as one block, strides first. * info.strides = stdlib.malloc(sizeof(Py_ssize_t) * ndim * 2) * info.shape = info.strides + ndim # <<<<<<<<<<<<<< @@ -12596,7 +12610,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->shape = (__pyx_v_info->strides + __pyx_v_ndim); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":231 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":231 * info.strides = stdlib.malloc(sizeof(Py_ssize_t) * ndim * 2) * info.shape = info.strides + ndim * for i in range(ndim): # <<<<<<<<<<<<<< @@ -12607,7 +12621,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { __pyx_v_i = __pyx_t_5; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":232 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":232 * info.shape = info.strides + ndim * for i in range(ndim): * info.strides[i] = PyArray_STRIDES(self)[i] # <<<<<<<<<<<<<< @@ -12616,7 +12630,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ (__pyx_v_info->strides[__pyx_v_i]) = (PyArray_STRIDES(__pyx_v_self)[__pyx_v_i]); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":233 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":233 * for i in range(ndim): * info.strides[i] = PyArray_STRIDES(self)[i] * info.shape[i] = PyArray_DIMS(self)[i] # <<<<<<<<<<<<<< @@ -12626,7 +12640,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P (__pyx_v_info->shape[__pyx_v_i]) = (PyArray_DIMS(__pyx_v_self)[__pyx_v_i]); } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 * info.buf = PyArray_DATA(self) * info.ndim = ndim * if copy_shape: # <<<<<<<<<<<<<< @@ -12636,7 +12650,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P goto __pyx_L11; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":235 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":235 * info.shape[i] = PyArray_DIMS(self)[i] * else: * info.strides = PyArray_STRIDES(self) # <<<<<<<<<<<<<< @@ -12646,7 +12660,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P /*else*/ { __pyx_v_info->strides = ((Py_ssize_t *)PyArray_STRIDES(__pyx_v_self)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":236 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":236 * else: * info.strides = PyArray_STRIDES(self) * info.shape = PyArray_DIMS(self) # <<<<<<<<<<<<<< @@ -12657,7 +12671,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P } __pyx_L11:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":237 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":237 * info.strides = PyArray_STRIDES(self) * info.shape = PyArray_DIMS(self) * info.suboffsets = NULL # <<<<<<<<<<<<<< @@ -12666,7 +12680,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->suboffsets = NULL; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":238 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":238 * info.shape = PyArray_DIMS(self) * info.suboffsets = NULL * info.itemsize = PyArray_ITEMSIZE(self) # <<<<<<<<<<<<<< @@ -12675,7 +12689,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->itemsize = PyArray_ITEMSIZE(__pyx_v_self); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":239 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":239 * info.suboffsets = NULL * info.itemsize = PyArray_ITEMSIZE(self) * info.readonly = not PyArray_ISWRITEABLE(self) # <<<<<<<<<<<<<< @@ -12684,7 +12698,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->readonly = (!(PyArray_ISWRITEABLE(__pyx_v_self) != 0)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":242 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":242 * * cdef int t * cdef char* f = NULL # <<<<<<<<<<<<<< @@ -12693,7 +12707,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_f = NULL; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":243 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":243 * cdef int t * cdef char* f = NULL * cdef dtype descr = self.descr # <<<<<<<<<<<<<< @@ -12705,7 +12719,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_descr = ((PyArray_Descr *)__pyx_t_3); __pyx_t_3 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":246 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":246 * cdef int offset * * cdef bint hasfields = PyDataType_HASFIELDS(descr) # <<<<<<<<<<<<<< @@ -12714,7 +12728,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_hasfields = PyDataType_HASFIELDS(__pyx_v_descr); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 * cdef bint hasfields = PyDataType_HASFIELDS(descr) * * if not hasfields and not copy_shape: # <<<<<<<<<<<<<< @@ -12732,7 +12746,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_L15_bool_binop_done:; if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":250 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":250 * if not hasfields and not copy_shape: * # do not call releasebuffer * info.obj = None # <<<<<<<<<<<<<< @@ -12745,7 +12759,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = Py_None; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 * cdef bint hasfields = PyDataType_HASFIELDS(descr) * * if not hasfields and not copy_shape: # <<<<<<<<<<<<<< @@ -12755,7 +12769,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P goto __pyx_L14; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":253 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":253 * else: * # need to call releasebuffer * info.obj = self # <<<<<<<<<<<<<< @@ -12771,7 +12785,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P } __pyx_L14:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":255 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":255 * info.obj = self * * if not hasfields: # <<<<<<<<<<<<<< @@ -12781,7 +12795,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = ((!(__pyx_v_hasfields != 0)) != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":256 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":256 * * if not hasfields: * t = descr.type_num # <<<<<<<<<<<<<< @@ -12791,7 +12805,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_4 = __pyx_v_descr->type_num; __pyx_v_t = __pyx_t_4; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 * if not hasfields: * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -12811,7 +12825,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P } __pyx_L20_next_or:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":258 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":258 * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or * (descr.byteorder == c'<' and not little_endian)): # <<<<<<<<<<<<<< @@ -12828,7 +12842,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = __pyx_t_2; __pyx_L19_bool_binop_done:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 * if not hasfields: * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -12837,7 +12851,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":259 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":259 * if ((descr.byteorder == c'>' and little_endian) or * (descr.byteorder == c'<' and not little_endian)): * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< @@ -12850,7 +12864,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __PYX_ERR(1, 259, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 * if not hasfields: * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -12859,7 +12873,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":260 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":260 * (descr.byteorder == c'<' and not little_endian)): * raise ValueError(u"Non-native byte order not supported") * if t == NPY_BYTE: f = "b" # <<<<<<<<<<<<<< @@ -12871,7 +12885,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"b"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":261 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":261 * raise ValueError(u"Non-native byte order not supported") * if t == NPY_BYTE: f = "b" * elif t == NPY_UBYTE: f = "B" # <<<<<<<<<<<<<< @@ -12882,7 +12896,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"B"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":262 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":262 * if t == NPY_BYTE: f = "b" * elif t == NPY_UBYTE: f = "B" * elif t == NPY_SHORT: f = "h" # <<<<<<<<<<<<<< @@ -12893,7 +12907,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"h"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":263 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":263 * elif t == NPY_UBYTE: f = "B" * elif t == NPY_SHORT: f = "h" * elif t == NPY_USHORT: f = "H" # <<<<<<<<<<<<<< @@ -12904,7 +12918,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"H"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":264 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":264 * elif t == NPY_SHORT: f = "h" * elif t == NPY_USHORT: f = "H" * elif t == NPY_INT: f = "i" # <<<<<<<<<<<<<< @@ -12915,7 +12929,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"i"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":265 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":265 * elif t == NPY_USHORT: f = "H" * elif t == NPY_INT: f = "i" * elif t == NPY_UINT: f = "I" # <<<<<<<<<<<<<< @@ -12926,7 +12940,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"I"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":266 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":266 * elif t == NPY_INT: f = "i" * elif t == NPY_UINT: f = "I" * elif t == NPY_LONG: f = "l" # <<<<<<<<<<<<<< @@ -12937,7 +12951,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"l"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":267 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":267 * elif t == NPY_UINT: f = "I" * elif t == NPY_LONG: f = "l" * elif t == NPY_ULONG: f = "L" # <<<<<<<<<<<<<< @@ -12948,7 +12962,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"L"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":268 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":268 * elif t == NPY_LONG: f = "l" * elif t == NPY_ULONG: f = "L" * elif t == NPY_LONGLONG: f = "q" # <<<<<<<<<<<<<< @@ -12959,7 +12973,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"q"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":269 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":269 * elif t == NPY_ULONG: f = "L" * elif t == NPY_LONGLONG: f = "q" * elif t == NPY_ULONGLONG: f = "Q" # <<<<<<<<<<<<<< @@ -12970,7 +12984,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Q"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":270 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":270 * elif t == NPY_LONGLONG: f = "q" * elif t == NPY_ULONGLONG: f = "Q" * elif t == NPY_FLOAT: f = "f" # <<<<<<<<<<<<<< @@ -12981,7 +12995,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"f"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":271 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":271 * elif t == NPY_ULONGLONG: f = "Q" * elif t == NPY_FLOAT: f = "f" * elif t == NPY_DOUBLE: f = "d" # <<<<<<<<<<<<<< @@ -12992,7 +13006,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"d"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":272 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":272 * elif t == NPY_FLOAT: f = "f" * elif t == NPY_DOUBLE: f = "d" * elif t == NPY_LONGDOUBLE: f = "g" # <<<<<<<<<<<<<< @@ -13003,7 +13017,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"g"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":273 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":273 * elif t == NPY_DOUBLE: f = "d" * elif t == NPY_LONGDOUBLE: f = "g" * elif t == NPY_CFLOAT: f = "Zf" # <<<<<<<<<<<<<< @@ -13014,7 +13028,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Zf"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":274 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":274 * elif t == NPY_LONGDOUBLE: f = "g" * elif t == NPY_CFLOAT: f = "Zf" * elif t == NPY_CDOUBLE: f = "Zd" # <<<<<<<<<<<<<< @@ -13025,7 +13039,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Zd"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":275 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":275 * elif t == NPY_CFLOAT: f = "Zf" * elif t == NPY_CDOUBLE: f = "Zd" * elif t == NPY_CLONGDOUBLE: f = "Zg" # <<<<<<<<<<<<<< @@ -13036,7 +13050,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Zg"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":276 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":276 * elif t == NPY_CDOUBLE: f = "Zd" * elif t == NPY_CLONGDOUBLE: f = "Zg" * elif t == NPY_OBJECT: f = "O" # <<<<<<<<<<<<<< @@ -13048,7 +13062,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P break; default: - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":278 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":278 * elif t == NPY_OBJECT: f = "O" * else: * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) # <<<<<<<<<<<<<< @@ -13074,7 +13088,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P break; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":279 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":279 * else: * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) * info.format = f # <<<<<<<<<<<<<< @@ -13083,7 +13097,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->format = __pyx_v_f; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":280 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":280 * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) * info.format = f * return # <<<<<<<<<<<<<< @@ -13093,7 +13107,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_r = 0; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":255 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":255 * info.obj = self * * if not hasfields: # <<<<<<<<<<<<<< @@ -13102,7 +13116,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":282 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":282 * return * else: * info.format = stdlib.malloc(_buffer_format_string_len) # <<<<<<<<<<<<<< @@ -13112,7 +13126,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P /*else*/ { __pyx_v_info->format = ((char *)malloc(0xFF)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":283 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":283 * else: * info.format = stdlib.malloc(_buffer_format_string_len) * info.format[0] = c'^' # Native data types, manual alignment # <<<<<<<<<<<<<< @@ -13121,7 +13135,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ (__pyx_v_info->format[0]) = '^'; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":284 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":284 * info.format = stdlib.malloc(_buffer_format_string_len) * info.format[0] = c'^' # Native data types, manual alignment * offset = 0 # <<<<<<<<<<<<<< @@ -13130,7 +13144,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_offset = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":285 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":285 * info.format[0] = c'^' # Native data types, manual alignment * offset = 0 * f = _util_dtypestring(descr, info.format + 1, # <<<<<<<<<<<<<< @@ -13140,7 +13154,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_7 = __pyx_f_5numpy__util_dtypestring(__pyx_v_descr, (__pyx_v_info->format + 1), (__pyx_v_info->format + 0xFF), (&__pyx_v_offset)); if (unlikely(__pyx_t_7 == NULL)) __PYX_ERR(1, 285, __pyx_L1_error) __pyx_v_f = __pyx_t_7; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":288 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":288 * info.format + _buffer_format_string_len, * &offset) * f[0] = c'\0' # Terminate format string # <<<<<<<<<<<<<< @@ -13150,7 +13164,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P (__pyx_v_f[0]) = '\x00'; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":197 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":197 * # experimental exception made for __getbuffer__ and __releasebuffer__ * # -- the details of this may change. * def __getbuffer__(ndarray self, Py_buffer* info, int flags): # <<<<<<<<<<<<<< @@ -13183,7 +13197,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":290 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":290 * f[0] = c'\0' # Terminate format string * * def __releasebuffer__(ndarray self, Py_buffer* info): # <<<<<<<<<<<<<< @@ -13209,7 +13223,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s __Pyx_RefNannySetupContext("__releasebuffer__", 0); __Pyx_TraceCall("__releasebuffer__", __pyx_f[1], 290, 0, __PYX_ERR(1, 290, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":291 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":291 * * def __releasebuffer__(ndarray self, Py_buffer* info): * if PyArray_HASFIELDS(self): # <<<<<<<<<<<<<< @@ -13219,7 +13233,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s __pyx_t_1 = (PyArray_HASFIELDS(__pyx_v_self) != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":292 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":292 * def __releasebuffer__(ndarray self, Py_buffer* info): * if PyArray_HASFIELDS(self): * stdlib.free(info.format) # <<<<<<<<<<<<<< @@ -13228,7 +13242,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s */ free(__pyx_v_info->format); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":291 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":291 * * def __releasebuffer__(ndarray self, Py_buffer* info): * if PyArray_HASFIELDS(self): # <<<<<<<<<<<<<< @@ -13237,7 +13251,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":293 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":293 * if PyArray_HASFIELDS(self): * stdlib.free(info.format) * if sizeof(npy_intp) != sizeof(Py_ssize_t): # <<<<<<<<<<<<<< @@ -13247,7 +13261,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s __pyx_t_1 = (((sizeof(npy_intp)) != (sizeof(Py_ssize_t))) != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":294 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":294 * stdlib.free(info.format) * if sizeof(npy_intp) != sizeof(Py_ssize_t): * stdlib.free(info.strides) # <<<<<<<<<<<<<< @@ -13256,7 +13270,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s */ free(__pyx_v_info->strides); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":293 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":293 * if PyArray_HASFIELDS(self): * stdlib.free(info.format) * if sizeof(npy_intp) != sizeof(Py_ssize_t): # <<<<<<<<<<<<<< @@ -13265,7 +13279,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":290 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":290 * f[0] = c'\0' # Terminate format string * * def __releasebuffer__(ndarray self, Py_buffer* info): # <<<<<<<<<<<<<< @@ -13276,13 +13290,13 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s /* function exit code */ goto __pyx_L0; __pyx_L1_error:; - __Pyx_WriteUnraisable("numpy.ndarray.__releasebuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0); + __Pyx_WriteUnraisable("numpy.ndarray.__releasebuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename, 0, 0); __pyx_L0:; __Pyx_TraceReturn(Py_None, 0); __Pyx_RefNannyFinishContext(); } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":770 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":770 * ctypedef npy_cdouble complex_t * * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<< @@ -13298,7 +13312,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__ __Pyx_RefNannySetupContext("PyArray_MultiIterNew1", 0); __Pyx_TraceCall("PyArray_MultiIterNew1", __pyx_f[1], 770, 0, __PYX_ERR(1, 770, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":771 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":771 * * cdef inline object PyArray_MultiIterNew1(a): * return PyArray_MultiIterNew(1, a) # <<<<<<<<<<<<<< @@ -13312,7 +13326,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__ __pyx_t_1 = 0; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":770 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":770 * ctypedef npy_cdouble complex_t * * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<< @@ -13332,7 +13346,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__ return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":773 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":773 * return PyArray_MultiIterNew(1, a) * * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<< @@ -13348,7 +13362,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__ __Pyx_RefNannySetupContext("PyArray_MultiIterNew2", 0); __Pyx_TraceCall("PyArray_MultiIterNew2", __pyx_f[1], 773, 0, __PYX_ERR(1, 773, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":774 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":774 * * cdef inline object PyArray_MultiIterNew2(a, b): * return PyArray_MultiIterNew(2, a, b) # <<<<<<<<<<<<<< @@ -13362,7 +13376,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__ __pyx_t_1 = 0; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":773 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":773 * return PyArray_MultiIterNew(1, a) * * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<< @@ -13382,7 +13396,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__ return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":776 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":776 * return PyArray_MultiIterNew(2, a, b) * * cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<< @@ -13398,7 +13412,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__ __Pyx_RefNannySetupContext("PyArray_MultiIterNew3", 0); 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} -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":785 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":785 * return PyArray_MultiIterNew(5, a, b, c, d, e) * * cdef inline char* _util_dtypestring(dtype descr, char* f, char* end, int* offset) except NULL: # <<<<<<<<<<<<<< @@ -13563,7 +13577,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_RefNannySetupContext("_util_dtypestring", 0); __Pyx_TraceCall("_util_dtypestring", __pyx_f[1], 785, 0, __PYX_ERR(1, 785, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":790 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":790 * * cdef dtype child * cdef int endian_detector = 1 # <<<<<<<<<<<<<< @@ -13572,7 +13586,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ __pyx_v_endian_detector = 1; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":791 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":791 * cdef dtype child * cdef int endian_detector = 1 * cdef bint little_endian = ((&endian_detector)[0] != 0) # <<<<<<<<<<<<<< @@ -13581,7 +13595,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ __pyx_v_little_endian = ((((char *)(&__pyx_v_endian_detector))[0]) != 0); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":794 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":794 * cdef tuple fields * * for childname in descr.names: # <<<<<<<<<<<<<< @@ -13604,7 +13618,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_XDECREF_SET(__pyx_v_childname, __pyx_t_3); __pyx_t_3 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":795 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":795 * * for childname in descr.names: * fields = descr.fields[childname] # <<<<<<<<<<<<<< @@ -13621,7 +13635,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_XDECREF_SET(__pyx_v_fields, ((PyObject*)__pyx_t_3)); __pyx_t_3 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":796 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":796 * for childname in descr.names: * fields = descr.fields[childname] * child, new_offset = fields # <<<<<<<<<<<<<< @@ -13660,7 +13674,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_XDECREF_SET(__pyx_v_new_offset, __pyx_t_4); __pyx_t_4 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":798 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":798 * child, new_offset = fields * * if (end - f) - (new_offset - offset[0]) < 15: # <<<<<<<<<<<<<< @@ -13677,7 +13691,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_t_6 = ((((__pyx_v_end - __pyx_v_f) - ((int)__pyx_t_5)) < 15) != 0); if (__pyx_t_6) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":799 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":799 * * if (end - f) - (new_offset - offset[0]) < 15: * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") # <<<<<<<<<<<<<< @@ -13690,7 +13704,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_DECREF(__pyx_t_3); 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__pyx_L7_bool_binop_done:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") * * if ((child.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -13745,7 +13759,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ if (__pyx_t_6) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":803 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":803 * if ((child.byteorder == c'>' and little_endian) or * (child.byteorder == c'<' and not little_endian)): * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< @@ -13758,7 +13772,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __PYX_ERR(1, 803, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":801 * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") * * if ((child.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -13767,7 +13781,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":813 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":813 * * # Output padding bytes * while offset[0] < new_offset: # <<<<<<<<<<<<<< @@ -13783,7 +13797,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; if (!__pyx_t_6) break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":814 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":814 * # Output padding bytes * while offset[0] < new_offset: * f[0] = 120 # "x"; pad byte # <<<<<<<<<<<<<< @@ -13792,7 +13806,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ (__pyx_v_f[0]) = 0x78; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":815 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":815 * while offset[0] < new_offset: * f[0] = 120 # "x"; pad byte * f += 1 # <<<<<<<<<<<<<< @@ -13801,7 +13815,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ __pyx_v_f = (__pyx_v_f + 1); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":816 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":816 * f[0] = 120 # "x"; pad byte * f += 1 * offset[0] += 1 # <<<<<<<<<<<<<< @@ -13812,7 +13826,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + 1); } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":818 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":818 * offset[0] += 1 * * offset[0] += child.itemsize # <<<<<<<<<<<<<< @@ -13822,7 +13836,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_t_8 = 0; (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + __pyx_v_child->elsize); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":820 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":820 * offset[0] += child.itemsize * * if not PyDataType_HASFIELDS(child): # <<<<<<<<<<<<<< @@ -13832,7 +13846,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_t_6 = ((!(PyDataType_HASFIELDS(__pyx_v_child) != 0)) != 0); if (__pyx_t_6) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":821 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":821 * * if not PyDataType_HASFIELDS(child): * t = child.type_num # <<<<<<<<<<<<<< @@ -13844,7 +13858,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_XDECREF_SET(__pyx_v_t, __pyx_t_4); __pyx_t_4 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":822 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":822 * if not PyDataType_HASFIELDS(child): * t = child.type_num * if end - f < 5: # <<<<<<<<<<<<<< @@ -13854,7 +13868,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_t_6 = (((__pyx_v_end - __pyx_v_f) < 5) != 0); if (__pyx_t_6) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":823 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":823 * t = child.type_num * if end - f < 5: * raise RuntimeError(u"Format string allocated too short.") # <<<<<<<<<<<<<< @@ -13867,7 +13881,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; __PYX_ERR(1, 823, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":822 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":822 * if not PyDataType_HASFIELDS(child): * t = child.type_num * if end - f < 5: # <<<<<<<<<<<<<< @@ -13876,7 +13890,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":826 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":826 * * # Until ticket #99 is fixed, use integers to avoid warnings * if t == NPY_BYTE: f[0] = 98 #"b" # <<<<<<<<<<<<<< @@ -13894,7 +13908,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":827 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":827 * # Until ticket #99 is fixed, use integers to avoid warnings * if t == NPY_BYTE: f[0] = 98 #"b" * elif t == NPY_UBYTE: f[0] = 66 #"B" # <<<<<<<<<<<<<< @@ -13912,7 +13926,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":828 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":828 * if t == NPY_BYTE: f[0] = 98 #"b" * elif t == NPY_UBYTE: f[0] = 66 #"B" * elif t == NPY_SHORT: f[0] = 104 #"h" # <<<<<<<<<<<<<< @@ -13930,7 +13944,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":829 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":829 * elif t == NPY_UBYTE: f[0] = 66 #"B" * elif t == NPY_SHORT: f[0] = 104 #"h" * elif t == NPY_USHORT: f[0] = 72 #"H" # <<<<<<<<<<<<<< @@ -13948,7 +13962,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":830 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":830 * elif t == NPY_SHORT: f[0] = 104 #"h" * elif t == NPY_USHORT: f[0] = 72 #"H" * elif t == NPY_INT: f[0] = 105 #"i" # <<<<<<<<<<<<<< @@ -13966,7 +13980,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":831 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":831 * elif t == NPY_USHORT: f[0] = 72 #"H" * elif t == NPY_INT: f[0] = 105 #"i" * elif t == NPY_UINT: f[0] = 73 #"I" # <<<<<<<<<<<<<< @@ -13984,7 +13998,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":832 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":832 * elif t == NPY_INT: f[0] = 105 #"i" * elif t == NPY_UINT: f[0] = 73 #"I" * elif t == NPY_LONG: f[0] = 108 #"l" # <<<<<<<<<<<<<< @@ -14002,7 +14016,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":833 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":833 * elif t == NPY_UINT: f[0] = 73 #"I" * elif t == NPY_LONG: f[0] = 108 #"l" * elif t == NPY_ULONG: f[0] = 76 #"L" # <<<<<<<<<<<<<< @@ -14020,7 +14034,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":834 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":834 * elif t == NPY_LONG: f[0] = 108 #"l" * elif t == NPY_ULONG: f[0] = 76 #"L" * elif t == NPY_LONGLONG: f[0] = 113 #"q" # <<<<<<<<<<<<<< @@ -14038,7 +14052,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":835 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":835 * elif t == NPY_ULONG: f[0] = 76 #"L" * elif t == NPY_LONGLONG: f[0] = 113 #"q" * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" # <<<<<<<<<<<<<< @@ -14056,7 +14070,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":836 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":836 * elif t == NPY_LONGLONG: f[0] = 113 #"q" * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" * elif t == NPY_FLOAT: f[0] = 102 #"f" # <<<<<<<<<<<<<< @@ -14074,7 +14088,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":837 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":837 * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" * elif t == NPY_FLOAT: f[0] = 102 #"f" * elif t == NPY_DOUBLE: f[0] = 100 #"d" # <<<<<<<<<<<<<< @@ -14092,7 +14106,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":838 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":838 * elif t == NPY_FLOAT: f[0] = 102 #"f" * elif t == NPY_DOUBLE: f[0] = 100 #"d" * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" # <<<<<<<<<<<<<< @@ -14110,7 +14124,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":839 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":839 * elif t == NPY_DOUBLE: f[0] = 100 #"d" * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf # <<<<<<<<<<<<<< @@ -14130,7 +14144,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":840 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":840 * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd # <<<<<<<<<<<<<< @@ -14150,7 +14164,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":841 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":841 * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd * elif t == NPY_CLONGDOUBLE: f[0] = 90; f[1] = 103; f += 1 # Zg # <<<<<<<<<<<<<< @@ -14170,7 +14184,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":842 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":842 * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd * elif t == NPY_CLONGDOUBLE: f[0] = 90; f[1] = 103; f += 1 # Zg * elif t == NPY_OBJECT: f[0] = 79 #"O" # <<<<<<<<<<<<<< @@ -14188,7 +14202,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L15; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":844 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":844 * elif t == NPY_OBJECT: f[0] = 79 #"O" * else: * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) # <<<<<<<<<<<<<< @@ -14212,7 +14226,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx } __pyx_L15:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":845 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":845 * else: * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) * f += 1 # <<<<<<<<<<<<<< @@ -14221,7 +14235,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx */ __pyx_v_f = (__pyx_v_f + 1); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":820 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":820 * offset[0] += child.itemsize * * if not PyDataType_HASFIELDS(child): # <<<<<<<<<<<<<< @@ -14231,7 +14245,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx goto __pyx_L13; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":849 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":849 * # Cython ignores struct boundary information ("T{...}"), * # so don't output it * f = _util_dtypestring(child, f, end, offset) # <<<<<<<<<<<<<< @@ -14244,7 +14258,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx } __pyx_L13:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":794 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":794 * cdef tuple fields * * for childname in descr.names: # <<<<<<<<<<<<<< @@ -14254,7 +14268,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx } __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":850 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":850 * # so don't output it * f = _util_dtypestring(child, f, end, offset) * return f # <<<<<<<<<<<<<< @@ -14264,7 +14278,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx __pyx_r = __pyx_v_f; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":785 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":785 * return PyArray_MultiIterNew(5, a, b, c, d, e) * * cdef inline char* _util_dtypestring(dtype descr, char* f, char* end, int* offset) except NULL: # <<<<<<<<<<<<<< @@ -14290,7 +14304,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":966 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":966 * * * cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<< @@ -14307,7 +14321,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a __Pyx_RefNannySetupContext("set_array_base", 0); __Pyx_TraceCall("set_array_base", __pyx_f[1], 966, 0, __PYX_ERR(1, 966, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":968 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":968 * cdef inline void set_array_base(ndarray arr, object base): * cdef PyObject* baseptr * if base is None: # <<<<<<<<<<<<<< @@ -14318,7 +14332,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a __pyx_t_2 = (__pyx_t_1 != 0); if (__pyx_t_2) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":969 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":969 * cdef PyObject* baseptr * if base is None: * baseptr = NULL # <<<<<<<<<<<<<< @@ -14327,7 +14341,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a */ __pyx_v_baseptr = NULL; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":968 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":968 * cdef inline void set_array_base(ndarray arr, object base): * cdef PyObject* baseptr * if base is None: # <<<<<<<<<<<<<< @@ -14337,7 +14351,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a goto __pyx_L3; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":971 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":971 * baseptr = NULL * else: * Py_INCREF(base) # important to do this before decref below! # <<<<<<<<<<<<<< @@ -14347,7 +14361,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a /*else*/ { Py_INCREF(__pyx_v_base); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":972 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":972 * else: * Py_INCREF(base) # important to do this before decref below! * baseptr = base # <<<<<<<<<<<<<< @@ -14358,7 +14372,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a } __pyx_L3:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":973 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":973 * Py_INCREF(base) # important to do this before decref below! * baseptr = base * Py_XDECREF(arr.base) # <<<<<<<<<<<<<< @@ -14367,7 +14381,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a */ Py_XDECREF(__pyx_v_arr->base); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":974 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":974 * baseptr = base * Py_XDECREF(arr.base) * arr.base = baseptr # <<<<<<<<<<<<<< @@ -14376,7 +14390,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a */ __pyx_v_arr->base = __pyx_v_baseptr; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":966 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":966 * * * cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<< @@ -14387,13 +14401,13 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a /* function exit code */ goto __pyx_L0; __pyx_L1_error:; - __Pyx_WriteUnraisable("numpy.set_array_base", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0); + __Pyx_WriteUnraisable("numpy.set_array_base", __pyx_clineno, __pyx_lineno, __pyx_filename, 0, 0); __pyx_L0:; __Pyx_TraceReturn(Py_None, 0); __Pyx_RefNannyFinishContext(); } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":976 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":976 * arr.base = baseptr * * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<< @@ -14409,7 +14423,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py __Pyx_RefNannySetupContext("get_array_base", 0); __Pyx_TraceCall("get_array_base", __pyx_f[1], 976, 0, __PYX_ERR(1, 976, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":977 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":977 * * cdef inline object get_array_base(ndarray arr): * if arr.base is NULL: # <<<<<<<<<<<<<< @@ -14419,7 +14433,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py __pyx_t_1 = ((__pyx_v_arr->base == NULL) != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":978 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":978 * cdef inline object get_array_base(ndarray arr): * if arr.base is NULL: * return None # <<<<<<<<<<<<<< @@ -14431,7 +14445,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py __pyx_r = Py_None; goto __pyx_L0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":977 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":977 * * cdef inline object get_array_base(ndarray arr): * if arr.base is NULL: # <<<<<<<<<<<<<< @@ -14440,7 +14454,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":980 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":980 * return None * else: * return arr.base # <<<<<<<<<<<<<< @@ -14454,7 +14468,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py goto __pyx_L0; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":976 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":976 * arr.base = baseptr * * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<< @@ -14473,7 +14487,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":985 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":985 * # Versions of the import_* functions which are more suitable for * # Cython code. * cdef inline int import_array() except -1: # <<<<<<<<<<<<<< @@ -14496,7 +14510,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_RefNannySetupContext("import_array", 0); __Pyx_TraceCall("import_array", __pyx_f[1], 985, 0, __PYX_ERR(1, 985, __pyx_L1_error)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 * # Cython code. * cdef inline int import_array() except -1: * try: # <<<<<<<<<<<<<< @@ -14512,7 +14526,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_XGOTREF(__pyx_t_3); /*try:*/ { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":987 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":987 * cdef inline int import_array() except -1: * try: * _import_array() # <<<<<<<<<<<<<< @@ -14521,7 +14535,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { */ __pyx_t_4 = _import_array(); if (unlikely(__pyx_t_4 == -1)) __PYX_ERR(1, 987, __pyx_L3_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 * # Cython code. * cdef inline int import_array() except -1: * try: # <<<<<<<<<<<<<< @@ -14532,11 +14546,11 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0; __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0; __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0; - goto __pyx_L8_try_end; + goto __pyx_L10_try_end; __pyx_L3_error:; __Pyx_PyThreadState_assign - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":988 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":988 * try: * _import_array() * except Exception: # <<<<<<<<<<<<<< @@ -14551,7 +14565,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_GOTREF(__pyx_t_6); __Pyx_GOTREF(__pyx_t_7); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":989 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":989 * _import_array() * except Exception: * raise ImportError("numpy.core.multiarray failed to import") # <<<<<<<<<<<<<< @@ -14567,7 +14581,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { goto __pyx_L5_except_error; __pyx_L5_except_error:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":986 * # Cython code. * cdef inline int import_array() except -1: * try: # <<<<<<<<<<<<<< @@ -14580,10 +14594,10 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_XGIVEREF(__pyx_t_3); __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3); goto __pyx_L1_error; - __pyx_L8_try_end:; + __pyx_L10_try_end:; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":985 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":985 * # Versions of the import_* functions which are more suitable for * # Cython code. * cdef inline int import_array() except -1: # <<<<<<<<<<<<<< @@ -14607,7 +14621,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":991 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":991 * raise ImportError("numpy.core.multiarray failed to import") * * cdef inline int import_umath() except -1: # <<<<<<<<<<<<<< @@ -14630,7 +14644,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) { __Pyx_RefNannySetupContext("import_umath", 0); 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__pyx_L5_except_error:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":992 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":992 * * cdef inline int import_umath() except -1: * try: # <<<<<<<<<<<<<< @@ -14714,10 +14728,10 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) { __Pyx_XGIVEREF(__pyx_t_3); __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3); goto __pyx_L1_error; - __pyx_L8_try_end:; + __pyx_L10_try_end:; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":991 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":991 * raise ImportError("numpy.core.multiarray failed to import") * * cdef inline int import_umath() except -1: # <<<<<<<<<<<<<< @@ -14741,7 +14755,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) { return __pyx_r; } -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":997 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":997 * raise ImportError("numpy.core.umath failed to import") * * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<< @@ -14764,7 +14778,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) { __Pyx_RefNannySetupContext("import_ufunc", 0); 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if (unlikely(!__pyx_slice__23)) __PYX_ERR(0, 825, __pyx_L1_error) + __pyx_slice__23 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__23)) __PYX_ERR(0, 832, __pyx_L1_error) __Pyx_GOTREF(__pyx_slice__23); __Pyx_GIVEREF(__pyx_slice__23); - /* "ccd/procedures.pyx":841 + /* "ccd/procedures.pyx":848 * end_day=period[model_window_stop - 1], * break_day=break_day, * magnitudes=np_zeros(shape=(7,)), # <<<<<<<<<<<<<< * observation_count=( * model_window_stop - model_window_start), */ - __pyx_tuple__24 = PyTuple_Pack(1, __pyx_int_7); if (unlikely(!__pyx_tuple__24)) __PYX_ERR(0, 841, __pyx_L1_error) + __pyx_tuple__24 = PyTuple_Pack(1, __pyx_int_7); if (unlikely(!__pyx_tuple__24)) __PYX_ERR(0, 848, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__24); __Pyx_GIVEREF(__pyx_tuple__24); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":218 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":218 * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): * raise ValueError(u"ndarray is not C contiguous") # <<<<<<<<<<<<<< @@ -15317,7 +15331,7 @@ static int __Pyx_InitCachedConstants(void) { __Pyx_GOTREF(__pyx_tuple__25); __Pyx_GIVEREF(__pyx_tuple__25); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":222 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":222 * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): * raise ValueError(u"ndarray is not Fortran contiguous") # <<<<<<<<<<<<<< @@ -15328,7 +15342,7 @@ static int __Pyx_InitCachedConstants(void) { __Pyx_GOTREF(__pyx_tuple__26); __Pyx_GIVEREF(__pyx_tuple__26); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":259 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":259 * if ((descr.byteorder == c'>' and little_endian) or * (descr.byteorder == c'<' and not little_endian)): * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< @@ -15339,7 +15353,7 @@ static int __Pyx_InitCachedConstants(void) { __Pyx_GOTREF(__pyx_tuple__27); __Pyx_GIVEREF(__pyx_tuple__27); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":799 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":799 * * if (end - f) - (new_offset - offset[0]) < 15: * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") # <<<<<<<<<<<<<< @@ -15350,7 +15364,7 @@ static int __Pyx_InitCachedConstants(void) { __Pyx_GOTREF(__pyx_tuple__28); __Pyx_GIVEREF(__pyx_tuple__28); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":803 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":803 * if ((child.byteorder == c'>' and little_endian) or * (child.byteorder == c'<' and not little_endian)): * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< @@ -15361,7 +15375,7 @@ static int __Pyx_InitCachedConstants(void) { __Pyx_GOTREF(__pyx_tuple__29); __Pyx_GIVEREF(__pyx_tuple__29); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":823 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":823 * t = child.type_num * if end - f < 5: * raise RuntimeError(u"Format string allocated too short.") # <<<<<<<<<<<<<< @@ -15372,7 +15386,7 @@ static int __Pyx_InitCachedConstants(void) { __Pyx_GOTREF(__pyx_tuple__30); __Pyx_GIVEREF(__pyx_tuple__30); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":989 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":989 * _import_array() * except Exception: * raise ImportError("numpy.core.multiarray failed to import") # <<<<<<<<<<<<<< @@ -15383,7 +15397,7 @@ static int __Pyx_InitCachedConstants(void) { __Pyx_GOTREF(__pyx_tuple__31); __Pyx_GIVEREF(__pyx_tuple__31); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":995 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":995 * _import_umath() * except Exception: * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<< @@ -15394,7 +15408,7 @@ static int __Pyx_InitCachedConstants(void) { __Pyx_GOTREF(__pyx_tuple__32); __Pyx_GIVEREF(__pyx_tuple__32); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":1001 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":1001 * _import_umath() * except Exception: * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<< @@ -15413,7 +15427,7 @@ static int __Pyx_InitCachedConstants(void) { __pyx_tuple__34 = PyTuple_Pack(9, __pyx_n_s_quality, __pyx_n_s_proc_params, __pyx_n_s_clear, __pyx_n_s_water, __pyx_n_s_fill, __pyx_n_s_snow, __pyx_n_s_clear_thresh, __pyx_n_s_snow_thresh, __pyx_n_s_func); if (unlikely(!__pyx_tuple__34)) __PYX_ERR(0, 61, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__34); __Pyx_GIVEREF(__pyx_tuple__34); - __pyx_codeobj_ = (PyObject*)__Pyx_PyCode_New(2, 0, 9, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__34, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_ccd_procedures_pyx, __pyx_n_s_fit_procedure, 61, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj_)) __PYX_ERR(0, 61, __pyx_L1_error) + __pyx_codeobj_ = (PyObject*)__Pyx_PyCode_New(2, 0, 9, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__34, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_caustin_workspace_lcmap_py, __pyx_n_s_fit_procedure, 61, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj_)) __PYX_ERR(0, 61, __pyx_L1_error) /* "ccd/procedures.pyx":96 * @@ -15422,22 +15436,22 @@ static int __Pyx_InitCachedConstants(void) { * proc_params): * """ */ - __pyx_tuple__35 = PyTuple_Pack(17, __pyx_n_s_dates, __pyx_n_s_observations, __pyx_n_s_fitter_fn, __pyx_n_s_quality, __pyx_n_s_proc_params, __pyx_n_s_meow_size, __pyx_n_s_curve_qa, __pyx_n_s_avg_days_yr, __pyx_n_s_fit_max_iter, __pyx_n_s_num_coef, __pyx_n_s_processing_mask, __pyx_n_s_period, __pyx_n_s_spectral_obs, __pyx_n_s_models, __pyx_n_s_magnitudes, __pyx_n_s_result, __pyx_n_s_spectrum); if (unlikely(!__pyx_tuple__35)) __PYX_ERR(0, 96, __pyx_L1_error) + __pyx_tuple__35 = PyTuple_Pack(19, __pyx_n_s_dates, __pyx_n_s_observations, __pyx_n_s_fitter_fn, __pyx_n_s_quality, __pyx_n_s_proc_params, __pyx_n_s_Lasso, __pyx_n_s_lasso, __pyx_n_s_meow_size, __pyx_n_s_curve_qa, __pyx_n_s_avg_days_yr, __pyx_n_s_fit_max_iter, __pyx_n_s_num_coef, __pyx_n_s_processing_mask, __pyx_n_s_period, __pyx_n_s_spectral_obs, __pyx_n_s_models, __pyx_n_s_magnitudes, __pyx_n_s_result, __pyx_n_s_spectrum); if (unlikely(!__pyx_tuple__35)) __PYX_ERR(0, 96, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__35); __Pyx_GIVEREF(__pyx_tuple__35); - __pyx_codeobj__2 = (PyObject*)__Pyx_PyCode_New(5, 0, 17, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_ccd_procedures_pyx, __pyx_n_s_permanent_snow_procedure, 96, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__2)) __PYX_ERR(0, 96, __pyx_L1_error) + __pyx_codeobj__2 = (PyObject*)__Pyx_PyCode_New(5, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_caustin_workspace_lcmap_py, __pyx_n_s_permanent_snow_procedure, 96, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__2)) __PYX_ERR(0, 96, __pyx_L1_error) - /* "ccd/procedures.pyx":154 + /* "ccd/procedures.pyx":157 * * * def insufficient_clear_procedure(dates, observations, fitter_fn, quality, # <<<<<<<<<<<<<< * proc_params): * """ */ - __pyx_tuple__36 = PyTuple_Pack(17, __pyx_n_s_dates, __pyx_n_s_observations, __pyx_n_s_fitter_fn, __pyx_n_s_quality, __pyx_n_s_proc_params, __pyx_n_s_meow_size, __pyx_n_s_curve_qa, __pyx_n_s_avg_days_yr, __pyx_n_s_fit_max_iter, __pyx_n_s_num_coef, __pyx_n_s_processing_mask, __pyx_n_s_period, __pyx_n_s_spectral_obs, __pyx_n_s_models, __pyx_n_s_magnitudes, __pyx_n_s_result, __pyx_n_s_spectrum); if (unlikely(!__pyx_tuple__36)) __PYX_ERR(0, 154, __pyx_L1_error) + __pyx_tuple__36 = PyTuple_Pack(19, __pyx_n_s_dates, __pyx_n_s_observations, __pyx_n_s_fitter_fn, __pyx_n_s_quality, __pyx_n_s_proc_params, __pyx_n_s_Lasso, __pyx_n_s_lasso, __pyx_n_s_meow_size, __pyx_n_s_curve_qa, __pyx_n_s_avg_days_yr, __pyx_n_s_fit_max_iter, __pyx_n_s_num_coef, __pyx_n_s_processing_mask, __pyx_n_s_period, __pyx_n_s_spectral_obs, __pyx_n_s_models, __pyx_n_s_magnitudes, __pyx_n_s_result, __pyx_n_s_spectrum); if (unlikely(!__pyx_tuple__36)) __PYX_ERR(0, 157, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__36); __Pyx_GIVEREF(__pyx_tuple__36); - __pyx_codeobj__4 = (PyObject*)__Pyx_PyCode_New(5, 0, 17, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__36, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_ccd_procedures_pyx, __pyx_n_s_insufficient_clear_procedure, 154, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__4)) __PYX_ERR(0, 154, __pyx_L1_error) + __pyx_codeobj__4 = (PyObject*)__Pyx_PyCode_New(5, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__36, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_caustin_workspace_lcmap_py, __pyx_n_s_insufficient_clear_procedure, 157, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__4)) __PYX_ERR(0, 157, __pyx_L1_error) __Pyx_RefNannyFinishContext(); return 0; __pyx_L1_error:; @@ -15521,7 +15535,6 @@ PyMODINIT_FUNC PyInit_procedures(void) __pyx_d = PyModule_GetDict(__pyx_m); if (unlikely(!__pyx_d)) __PYX_ERR(0, 1, __pyx_L1_error) Py_INCREF(__pyx_d); __pyx_b = PyImport_AddModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_b)) __PYX_ERR(0, 1, __pyx_L1_error) - __pyx_cython_runtime = PyImport_AddModule((char *) "cython_runtime"); if (unlikely(!__pyx_cython_runtime)) __PYX_ERR(0, 1, __pyx_L1_error) #if CYTHON_COMPILING_IN_PYPY Py_INCREF(__pyx_b); #endif @@ -15983,16 +15996,16 @@ PyMODINIT_FUNC PyInit_procedures(void) if (PyDict_SetItem(__pyx_d, __pyx_n_s_permanent_snow_procedure, __pyx_t_4) < 0) __PYX_ERR(0, 96, __pyx_L1_error) __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - /* "ccd/procedures.pyx":154 + /* "ccd/procedures.pyx":157 * * * def insufficient_clear_procedure(dates, observations, fitter_fn, quality, # <<<<<<<<<<<<<< * proc_params): * """ */ - __pyx_t_4 = PyCFunction_NewEx(&__pyx_mdef_3ccd_10procedures_5insufficient_clear_procedure, NULL, __pyx_n_s_ccd_procedures); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 154, __pyx_L1_error) + __pyx_t_4 = PyCFunction_NewEx(&__pyx_mdef_3ccd_10procedures_5insufficient_clear_procedure, NULL, __pyx_n_s_ccd_procedures); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 157, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_4); - if (PyDict_SetItem(__pyx_d, __pyx_n_s_insufficient_clear_procedure, __pyx_t_4) < 0) __PYX_ERR(0, 154, __pyx_L1_error) + if (PyDict_SetItem(__pyx_d, __pyx_n_s_insufficient_clear_procedure, __pyx_t_4) < 0) __PYX_ERR(0, 157, __pyx_L1_error) __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; /* "ccd/procedures.pyx":1 @@ -16005,7 +16018,7 @@ PyMODINIT_FUNC PyInit_procedures(void) if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_4) < 0) __PYX_ERR(0, 1, __pyx_L1_error) __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":997 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":997 * raise ImportError("numpy.core.umath failed to import") * * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<< @@ -16026,7 +16039,7 @@ PyMODINIT_FUNC PyInit_procedures(void) __Pyx_XDECREF(__pyx_t_6); if (__pyx_m) { if (__pyx_d) { - __Pyx_AddTraceback("init ccd.procedures", 0, __pyx_lineno, __pyx_filename); + __Pyx_AddTraceback("init ccd.procedures", __pyx_clineno, __pyx_lineno, __pyx_filename); } Py_DECREF(__pyx_m); __pyx_m = 0; } else if (!PyErr_Occurred()) { @@ -16443,8 +16456,8 @@ static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_LeaveRecursiveCall(); return result; } -#endif -#endif +#endif // CPython < 3.6 +#endif // CYTHON_FAST_PYCALL /* PyCFunctionFastCall */ #if CYTHON_FAST_PYCCALL @@ -16452,22 +16465,17 @@ static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, P PyCFunctionObject *func = (PyCFunctionObject*)func_obj; PyCFunction meth = PyCFunction_GET_FUNCTION(func); PyObject *self = PyCFunction_GET_SELF(func); - int flags = PyCFunction_GET_FLAGS(func); assert(PyCFunction_Check(func)); - assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))); + assert(METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST))); assert(nargs >= 0); assert(nargs == 0 || args != NULL); /* _PyCFunction_FastCallDict() must not be called with an exception set, because it may clear it (directly or indirectly) and so the caller loses its exception */ assert(!PyErr_Occurred()); - if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) { - return (*((__Pyx_PyCFunctionFastWithKeywords)meth)) (self, args, nargs, NULL); - } else { - return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs); - } + return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL); } -#endif +#endif // CYTHON_FAST_PYCCALL /* PyObjectCall */ #if CYTHON_COMPILING_IN_CPYTHON @@ -16489,6 +16497,94 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg } #endif +/* Import */ + static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { + PyObject *empty_list = 0; + PyObject *module = 0; + PyObject *global_dict = 0; + PyObject *empty_dict = 0; + PyObject *list; + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_import; + py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); + if (!py_import) + goto bad; + #endif + if (from_list) + list = from_list; + else { + empty_list = PyList_New(0); + if (!empty_list) + goto bad; + list = empty_list; + } + global_dict = PyModule_GetDict(__pyx_m); + if (!global_dict) + goto bad; + empty_dict = PyDict_New(); + if (!empty_dict) + goto bad; + { + #if PY_MAJOR_VERSION >= 3 + if (level == -1) { + if (strchr(__Pyx_MODULE_NAME, '.')) { + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_level = PyInt_FromLong(1); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, 1); + #endif + if (!module) { + if (!PyErr_ExceptionMatches(PyExc_ImportError)) + goto bad; + PyErr_Clear(); + } + } + level = 0; + } + #endif + if (!module) { + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_level = PyInt_FromLong(level); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, level); + #endif + } + } +bad: + #if PY_VERSION_HEX < 0x03030000 + Py_XDECREF(py_import); + #endif + Py_XDECREF(empty_list); + Py_XDECREF(empty_dict); + return module; +} + +/* ImportFrom */ + static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { + PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); + if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { + PyErr_Format(PyExc_ImportError, + #if PY_MAJOR_VERSION < 3 + "cannot import name %.230s", PyString_AS_STRING(name)); + #else + "cannot import name %S", name); + #endif + } + return value; +} + /* PyObjectCallMethO */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { @@ -16527,7 +16623,11 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec return __Pyx_PyFunction_FastCall(func, &arg, 1); } #endif +#ifdef __Pyx_CyFunction_USED + if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { +#else if (likely(PyCFunction_Check(func))) { +#endif if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { return __Pyx_PyObject_CallMethO(func, arg); #if CYTHON_FAST_PYCCALL @@ -16550,7 +16650,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec #endif /* GetItemInt */ - static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { + static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { PyObject *r; if (!j) return NULL; r = PyObject_GetItem(o, j); @@ -16561,12 +16661,9 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_ CYTHON_NCP_UNUSED int wraparound, CYTHON_NCP_UNUSED int boundscheck) { #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS - Py_ssize_t wrapped_i = i; - if (wraparound & unlikely(i < 0)) { - wrapped_i += PyList_GET_SIZE(o); - } - if ((!boundscheck) || likely((0 <= wrapped_i) & (wrapped_i < PyList_GET_SIZE(o)))) { - PyObject *r = PyList_GET_ITEM(o, wrapped_i); + if (wraparound & unlikely(i < 0)) i += PyList_GET_SIZE(o); + if ((!boundscheck) || likely((0 <= i) & (i < PyList_GET_SIZE(o)))) { + PyObject *r = PyList_GET_ITEM(o, i); Py_INCREF(r); return r; } @@ -16579,12 +16676,9 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize CYTHON_NCP_UNUSED int wraparound, CYTHON_NCP_UNUSED int boundscheck) { #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS - Py_ssize_t wrapped_i = i; - if (wraparound & unlikely(i < 0)) { - wrapped_i += PyTuple_GET_SIZE(o); - } - if ((!boundscheck) || likely((0 <= wrapped_i) & (wrapped_i < PyTuple_GET_SIZE(o)))) { - PyObject *r = PyTuple_GET_ITEM(o, wrapped_i); + if (wraparound & unlikely(i < 0)) i += PyTuple_GET_SIZE(o); + if ((!boundscheck) || likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, i); Py_INCREF(r); return r; } @@ -16637,7 +16731,7 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, } /* BufferFormatCheck */ - static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { + static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { unsigned int n = 1; return *(unsigned char*)(&n) != 0; } @@ -17186,96 +17280,8 @@ static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { __Pyx_ReleaseBuffer(info); } -/* Import */ - static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { - PyObject *empty_list = 0; - PyObject *module = 0; - PyObject *global_dict = 0; - PyObject *empty_dict = 0; - PyObject *list; - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_import; - py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); - if (!py_import) - goto bad; - #endif - if (from_list) - list = from_list; - else { - empty_list = PyList_New(0); - if (!empty_list) - goto bad; - list = empty_list; - } - global_dict = PyModule_GetDict(__pyx_m); - if (!global_dict) - goto bad; - empty_dict = PyDict_New(); - if (!empty_dict) - goto bad; - { - #if PY_MAJOR_VERSION >= 3 - if (level == -1) { - if (strchr(__Pyx_MODULE_NAME, '.')) { - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_level = PyInt_FromLong(1); - if (!py_level) - goto bad; - module = PyObject_CallFunctionObjArgs(py_import, - name, global_dict, empty_dict, list, py_level, NULL); - Py_DECREF(py_level); - #else - module = PyImport_ImportModuleLevelObject( - name, global_dict, empty_dict, list, 1); - #endif - if (!module) { - if (!PyErr_ExceptionMatches(PyExc_ImportError)) - goto bad; - PyErr_Clear(); - } - } - level = 0; - } - #endif - if (!module) { - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_level = PyInt_FromLong(level); - if (!py_level) - goto bad; - module = PyObject_CallFunctionObjArgs(py_import, - name, global_dict, empty_dict, list, py_level, NULL); - Py_DECREF(py_level); - #else - module = PyImport_ImportModuleLevelObject( - name, global_dict, empty_dict, list, level); - #endif - } - } -bad: - #if PY_VERSION_HEX < 0x03030000 - Py_XDECREF(py_import); - #endif - Py_XDECREF(empty_list); - Py_XDECREF(empty_dict); - return module; -} - -/* ImportFrom */ - static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { - PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); - if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { - PyErr_Format(PyExc_ImportError, - #if PY_MAJOR_VERSION < 3 - "cannot import name %.230s", PyString_AS_STRING(name)); - #else - "cannot import name %S", name); - #endif - } - return value; -} - /* ExtTypeTest */ - static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; @@ -17288,25 +17294,25 @@ static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { } /* RaiseTooManyValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { + static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } /* RaiseNeedMoreValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { + static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } /* RaiseNoneIterError */ - static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { + static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } /* PyErrFetchRestore */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; tmp_type = tstate->curexc_type; @@ -17330,7 +17336,7 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject #endif /* ArgTypeTest */ - static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { + static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { PyErr_Format(PyExc_TypeError, "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", name, type->tp_name, Py_TYPE(obj)->tp_name); @@ -17357,7 +17363,7 @@ static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, in } /* PyIntBinop */ - #if !CYTHON_COMPILING_IN_PYPY + #if !CYTHON_COMPILING_IN_PYPY static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { #if PY_MAJOR_VERSION < 3 if (likely(PyInt_CheckExact(op1))) { @@ -17473,7 +17479,7 @@ static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED #endif /* PyIntBinop */ - #if !CYTHON_COMPILING_IN_PYPY + #if !CYTHON_COMPILING_IN_PYPY static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { #if PY_MAJOR_VERSION < 3 if (likely(PyInt_CheckExact(op1))) { @@ -17589,12 +17595,12 @@ static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, CYTHON_U #endif /* None */ - static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) { + static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) { PyErr_Format(PyExc_UnboundLocalError, "local variable '%s' referenced before assignment", varname); } /* SaveResetException */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { *type = tstate->exc_type; *value = tstate->exc_value; @@ -17618,7 +17624,7 @@ static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject #endif /* GetException */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { #else static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { @@ -17679,7 +17685,7 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) } /* RaiseException */ - #if PY_MAJOR_VERSION < 3 + #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { __Pyx_PyThreadState_declare @@ -17842,7 +17848,7 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject #endif /* WriteUnraisableException */ - static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, + static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename, int full_traceback, CYTHON_UNUSED int nogil) { PyObject *old_exc, *old_val, *old_tb; @@ -17884,7 +17890,7 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject } /* PyErrExceptionMatches */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) { PyObject *exc_type = tstate->curexc_type; if (exc_type == err) return 1; @@ -17893,42 +17899,8 @@ static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tsta } #endif -/* CLineInTraceback */ - static int __Pyx_CLineForTraceback(int c_line) { -#ifdef CYTHON_CLINE_IN_TRACEBACK - return ((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0; -#else - PyObject **cython_runtime_dict; - PyObject *use_cline; - cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); - if (unlikely(!cython_runtime_dict)) { - PyObject *ptype, *pvalue, *ptraceback; - PyObject *use_cline_obj; - PyErr_Fetch(&ptype, &pvalue, &ptraceback); - use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); - if (use_cline_obj) { - use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; - Py_DECREF(use_cline_obj); - } else { - use_cline = NULL; - } - PyErr_Restore(ptype, pvalue, ptraceback); - } else { - use_cline = PyDict_GetItem(*_PyObject_GetDictPtr(__pyx_cython_runtime), __pyx_n_s_cline_in_traceback); - } - if (!use_cline) { - c_line = 0; - PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); - } - else if (PyObject_Not(use_cline) != 0) { - c_line = 0; - } - return c_line; -#endif -} - /* CodeObjectCache */ - static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; @@ -18008,7 +17980,7 @@ static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { } /* AddTraceback */ - #include "compile.h" + #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( @@ -18067,15 +18039,12 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyFrameObject *py_frame = 0; - if (c_line) { - c_line = __Pyx_CLineForTraceback(c_line); - } - py_code = __pyx_find_code_object(c_line ? -c_line : py_line); + py_code = __pyx_find_code_object(c_line ? c_line : py_line); if (!py_code) { py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) goto bad; - __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); + __pyx_insert_code_object(c_line ? c_line : py_line, py_code); } py_frame = PyFrame_New( PyThreadState_GET(), /*PyThreadState *tstate,*/ @@ -18112,8 +18081,8 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif - /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + /* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -18144,7 +18113,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPyVerify */ - #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) @@ -18166,7 +18135,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -18197,7 +18166,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -18228,7 +18197,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); @@ -18248,7 +18217,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -18383,7 +18352,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); @@ -18403,7 +18372,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -18538,7 +18507,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -18569,7 +18538,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -18758,7 +18727,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -18947,7 +18916,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CheckBinaryVersion */ - static int __Pyx_check_binary_version(void) { + static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); @@ -18963,7 +18932,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* ModuleImport */ - #ifndef __PYX_HAVE_RT_ImportModule + #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; @@ -18981,7 +18950,7 @@ static PyObject *__Pyx_ImportModule(const char *name) { #endif /* TypeImport */ - #ifndef __PYX_HAVE_RT_ImportType + #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) @@ -19046,7 +19015,7 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class #endif /* FunctionImport */ - #ifndef __PYX_HAVE_RT_ImportFunction + #ifndef __PYX_HAVE_RT_ImportFunction #define __PYX_HAVE_RT_ImportFunction static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (**f)(void), const char *sig) { PyObject *d = 0; @@ -19100,7 +19069,7 @@ static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (** #endif /* InitStrings */ - static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { @@ -19125,8 +19094,6 @@ static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (** #endif if (!*t->p) return -1; - if (PyObject_Hash(*t->p) == -1) - PyErr_Clear(); ++t; } return 0; @@ -19135,11 +19102,11 @@ static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (** static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); } -static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { +static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } -static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { +static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if CYTHON_COMPILING_IN_CPYTHON && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) if ( #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII diff --git a/ccd/procedures.pyx b/ccd/procedures.pyx index 7a5b756..7e4611f 100644 --- a/ccd/procedures.pyx +++ b/ccd/procedures.pyx @@ -117,6 +117,9 @@ def permanent_snow_procedure(dates, observations, fitter_fn, quality, 1-d ndarray: processing mask indicating which values were used for model fitting """ + from sklearn.linear_model import Lasso + lasso = Lasso(max_iter=proc_params['LASSO_MAX_ITER']) + # TODO do this better meow_size = proc_params['MEOW_SIZE'] curve_qa = proc_params['CURVE_QA']['PERSIST_SNOW'] @@ -133,7 +136,7 @@ def permanent_snow_procedure(dates, observations, fitter_fn, quality, if np_sum(processing_mask) < meow_size: return [], processing_mask - models = [fitter_fn(period, spectrum, fit_max_iter, avg_days_yr, num_coef) + models = [fitter_fn(period, spectrum, fit_max_iter, avg_days_yr, num_coef, lasso) for spectrum in spectral_obs] magnitudes = np_zeros(shape=(observations.shape[0],)) @@ -175,6 +178,10 @@ def insufficient_clear_procedure(dates, observations, fitter_fn, quality, 1-d ndarray: processing mask indicating which values were used for model fitting """ + + from sklearn.linear_model import Lasso + lasso = Lasso(max_iter=proc_params['LASSO_MAX_ITER']) + # TODO do this better meow_size = proc_params['MEOW_SIZE'] curve_qa = proc_params['CURVE_QA']['INSUF_CLEAR'] @@ -191,7 +198,7 @@ def insufficient_clear_procedure(dates, observations, fitter_fn, quality, if np_sum(processing_mask) < meow_size: return [], processing_mask - models = [fitter_fn(period, spectrum, fit_max_iter, avg_days_yr, num_coef) + models = [fitter_fn(period, spectrum, fit_max_iter, avg_days_yr, num_coef, lasso) for spectrum in spectral_obs] magnitudes = np_zeros(shape=(observations.shape[0],)) diff --git a/ccd/qa.py b/ccd/qa.py index cbef30a..8270e1e 100644 --- a/ccd/qa.py +++ b/ccd/qa.py @@ -284,10 +284,10 @@ def snow_procedure_filter(observations, quality, dates, proc_params): Returns: 1-d boolean ndarray """ - thermal_idx = proc_params.THERMAL_IDX - clear = proc_params.QA_CLEAR - water = proc_params.QA_WATER - snow = proc_params.QA_SNOW + thermal_idx = proc_params['THERMAL_IDX'] + clear = proc_params['QA_CLEAR'] + water = proc_params['QA_WATER'] + snow = proc_params['QA_SNOW'] mask = ((mask_value(quality, water) | mask_value(quality, clear)) & filter_thermal_celsius(observations[thermal_idx]) & @@ -316,8 +316,8 @@ def insufficient_clear_filter(observations, quality, dates, proc_params): Returns: 1-d boolean ndarray """ - green_idx = proc_params.GREEN_IDX - filter_range = proc_params.MEDIAN_GREEN_FILTER + green_idx = proc_params['GREEN_IDX'] + filter_range = proc_params['MEDIAN_GREEN_FILTER'] standard_mask = standard_procedure_filter(observations, quality, dates, proc_params) green_mask = filter_median_green(observations[:, standard_mask][green_idx], filter_range) diff --git a/setup.py b/setup.py index 52c7041..df4d528 100644 --- a/setup.py +++ b/setup.py @@ -29,7 +29,8 @@ extensions = [Extension('ccd.models.lasso', ['ccd/models/lasso'+EXT_TYPE], include_dirs=[np_incl]), Extension('ccd.models.robust_fit', ['ccd/models/robust_fit'+EXT_TYPE], include_dirs=[np_incl]), Extension('ccd.models.tmask', ['ccd/models/tmask'+EXT_TYPE], include_dirs=[np_incl]), - Extension('ccd.procedures', ['ccd/procedures'+EXT_TYPE], include_dirs=[np_incl])] + Extension('ccd.procedures', ['ccd/procedures'+EXT_TYPE], include_dirs=[np_incl]), + Extension('test.test_models', ['test/test_models' + EXT_TYPE], include_dirs=[np_incl])] if USE_CYTHON: from Cython.Build import cythonize diff --git a/test/shared.py b/test/shared.py index d142298..d5da19c 100644 --- a/test/shared.py +++ b/test/shared.py @@ -67,8 +67,8 @@ def read_data(path): Returns: A 2D numpy array. """ - return np.genfromtxt(path, delimiter=',', dtype=np.int).T - + #return np.genfromtxt(path, delimiter=',', dtype=np.int).T + return np.genfromtxt(path, delimiter=',', dtype=np.float).T def gen_acquisition_dates(interval): """Generate acquisition dates for an ISO8601 interval. diff --git a/test/test_ccd_detect.py b/test/test_ccd_detect.py index cd0f70c..fc5988c 100644 --- a/test/test_ccd_detect.py +++ b/test/test_ccd_detect.py @@ -32,8 +32,15 @@ def test_sample_data_sets(): for sample in samples: data = read_data(sample) - results = ccd.detect(data[0], data[1], data[2], data[3], data[4], - data[5], data[6], data[7], data[8], + results = ccd.detect(np.asarray(data[0], dtype=np.long), + np.asarray(data[1], dtype=np.float64), + np.asarray(data[2], dtype=np.float64), + np.asarray(data[3], dtype=np.float64), + np.asarray(data[4], dtype=np.float64), + np.asarray(data[5], dtype=np.float64), + np.asarray(data[6], dtype=np.float64), + np.asarray(data[7], dtype=np.float64), + np.asarray(data[8], dtype=np.long), params=params) diff --git a/test/test_models.c b/test/test_models.c new file mode 100644 index 0000000..da6343c --- /dev/null +++ b/test/test_models.c @@ -0,0 +1,7452 @@ +/* Generated by Cython 0.25.2 */ + +/* BEGIN: Cython Metadata +{ + "distutils": { + "depends": [ + "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h", + "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h" + ], + "include_dirs": [ + "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include" + ] + }, + "module_name": "test.test_models" +} +END: Cython Metadata */ + +#define PY_SSIZE_T_CLEAN +#include "Python.h" +#ifndef Py_PYTHON_H + #error Python headers needed to compile C extensions, please install development version of Python. +#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) + #error Cython requires Python 2.6+ or Python 3.2+. +#else +#define CYTHON_ABI "0_25_2" +#include +#ifndef offsetof + #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) +#endif +#if !defined(WIN32) && !defined(MS_WINDOWS) + #ifndef __stdcall + #define __stdcall + #endif + #ifndef __cdecl + #define __cdecl + #endif + #ifndef __fastcall + #define __fastcall + #endif +#endif +#ifndef DL_IMPORT + #define DL_IMPORT(t) t +#endif +#ifndef DL_EXPORT + #define DL_EXPORT(t) t +#endif +#ifndef HAVE_LONG_LONG + #if PY_VERSION_HEX >= 0x03030000 || (PY_MAJOR_VERSION == 2 && PY_VERSION_HEX >= 0x02070000) + #define HAVE_LONG_LONG + #endif +#endif +#ifndef PY_LONG_LONG + #define PY_LONG_LONG LONG_LONG +#endif +#ifndef Py_HUGE_VAL + #define Py_HUGE_VAL HUGE_VAL +#endif +#ifdef PYPY_VERSION + #define CYTHON_COMPILING_IN_PYPY 1 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #undef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 0 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #undef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #undef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 1 + #undef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 0 + #undef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 0 + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 +#elif defined(PYSTON_VERSION) + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 1 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 +#else + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 1 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #if PY_MAJOR_VERSION < 3 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #elif !defined(CYTHON_USE_ASYNC_SLOTS) + #define CYTHON_USE_ASYNC_SLOTS 1 + #endif + #if PY_VERSION_HEX < 0x02070000 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #elif !defined(CYTHON_USE_PYLONG_INTERNALS) + #define CYTHON_USE_PYLONG_INTERNALS 1 + #endif + #ifndef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 1 + #endif + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #if PY_VERSION_HEX < 0x030300F0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #elif !defined(CYTHON_USE_UNICODE_WRITER) + #define CYTHON_USE_UNICODE_WRITER 1 + #endif + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #ifndef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 1 + #endif + #ifndef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 1 + #endif +#endif +#if !defined(CYTHON_FAST_PYCCALL) +#define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1) +#endif +#if CYTHON_USE_PYLONG_INTERNALS + #include "longintrepr.h" + #undef SHIFT + #undef BASE + #undef MASK +#endif +#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag) + #define Py_OptimizeFlag 0 +#endif +#define __PYX_BUILD_PY_SSIZE_T "n" +#define CYTHON_FORMAT_SSIZE_T "z" +#if PY_MAJOR_VERSION < 3 + #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ + PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) + #define __Pyx_DefaultClassType PyClass_Type +#else + #define __Pyx_BUILTIN_MODULE_NAME "builtins" + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ + PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) + #define __Pyx_DefaultClassType PyType_Type +#endif +#ifndef Py_TPFLAGS_CHECKTYPES + #define Py_TPFLAGS_CHECKTYPES 0 +#endif +#ifndef Py_TPFLAGS_HAVE_INDEX + #define Py_TPFLAGS_HAVE_INDEX 0 +#endif +#ifndef Py_TPFLAGS_HAVE_NEWBUFFER + #define Py_TPFLAGS_HAVE_NEWBUFFER 0 +#endif +#ifndef Py_TPFLAGS_HAVE_FINALIZE + #define Py_TPFLAGS_HAVE_FINALIZE 0 +#endif +#ifndef METH_FASTCALL + #define METH_FASTCALL 0x80 + typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, + Py_ssize_t nargs, PyObject *kwnames); +#else + #define __Pyx_PyCFunctionFast _PyCFunctionFast +#endif +#if CYTHON_FAST_PYCCALL +#define __Pyx_PyFastCFunction_Check(func)\ + ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST))))) +#else +#define __Pyx_PyFastCFunction_Check(func) 0 +#endif +#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) + #define CYTHON_PEP393_ENABLED 1 + #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\ + 0 : _PyUnicode_Ready((PyObject *)(op))) + #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) + #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u) + #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u) + #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) + #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u))) +#else + #define CYTHON_PEP393_ENABLED 0 + #define PyUnicode_1BYTE_KIND 1 + #define PyUnicode_2BYTE_KIND 2 + #define PyUnicode_4BYTE_KIND 4 + #define __Pyx_PyUnicode_READY(op) (0) + #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) + #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111) + #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE)) + #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) + #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u)) +#endif +#if CYTHON_COMPILING_IN_PYPY + #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) + #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) +#else + #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) + #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ + PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains) + #define PyUnicode_Contains(u, s) PySequence_Contains(u, s) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check) + #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format) + #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc) + #define PyObject_Malloc(s) PyMem_Malloc(s) + #define PyObject_Free(p) PyMem_Free(p) + #define PyObject_Realloc(p) PyMem_Realloc(p) +#endif +#if CYTHON_COMPILING_IN_PYSTON + #define __Pyx_PyCode_HasFreeVars(co) PyCode_HasFreeVars(co) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno) +#else + #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno) +#endif +#define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) +#define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) +#else + #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) +#endif +#if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII) + #define PyObject_ASCII(o) PyObject_Repr(o) +#endif +#if PY_MAJOR_VERSION >= 3 + #define PyBaseString_Type PyUnicode_Type + #define PyStringObject PyUnicodeObject + #define PyString_Type PyUnicode_Type + #define PyString_Check PyUnicode_Check + #define PyString_CheckExact PyUnicode_CheckExact +#endif +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) + #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj) +#else + #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj)) + #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) +#endif +#ifndef PySet_CheckExact + #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) +#endif +#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) +#define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception) +#if PY_MAJOR_VERSION >= 3 + #define PyIntObject PyLongObject + #define PyInt_Type PyLong_Type + #define PyInt_Check(op) PyLong_Check(op) + #define PyInt_CheckExact(op) PyLong_CheckExact(op) + #define PyInt_FromString PyLong_FromString + #define PyInt_FromUnicode PyLong_FromUnicode + #define PyInt_FromLong PyLong_FromLong + #define PyInt_FromSize_t PyLong_FromSize_t + #define PyInt_FromSsize_t PyLong_FromSsize_t + #define PyInt_AsLong PyLong_AsLong + #define PyInt_AS_LONG PyLong_AS_LONG + #define PyInt_AsSsize_t PyLong_AsSsize_t + #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask + #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask + #define PyNumber_Int PyNumber_Long +#endif +#if PY_MAJOR_VERSION >= 3 + #define PyBoolObject PyLongObject +#endif +#if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY + #ifndef PyUnicode_InternFromString + #define PyUnicode_InternFromString(s) PyUnicode_FromString(s) + #endif +#endif +#if PY_VERSION_HEX < 0x030200A4 + typedef long Py_hash_t; + #define __Pyx_PyInt_FromHash_t PyInt_FromLong + #define __Pyx_PyInt_AsHash_t PyInt_AsLong +#else + #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t + #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t +#endif +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func)) +#else + #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) +#endif +#if CYTHON_USE_ASYNC_SLOTS + #if PY_VERSION_HEX >= 0x030500B1 + #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods + #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async) + #else + typedef struct { + unaryfunc am_await; + unaryfunc am_aiter; + unaryfunc am_anext; + } __Pyx_PyAsyncMethodsStruct; + #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved)) + #endif +#else + #define __Pyx_PyType_AsAsync(obj) NULL +#endif +#ifndef CYTHON_RESTRICT + #if defined(__GNUC__) + #define CYTHON_RESTRICT __restrict__ + #elif defined(_MSC_VER) && _MSC_VER >= 1400 + #define CYTHON_RESTRICT __restrict + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_RESTRICT restrict + #else + #define CYTHON_RESTRICT + #endif +#endif +#ifndef CYTHON_UNUSED +# if defined(__GNUC__) +# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +#endif +#ifndef CYTHON_MAYBE_UNUSED_VAR +# if defined(__cplusplus) + template void CYTHON_MAYBE_UNUSED_VAR( const T& ) { } +# else +# define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x) +# endif +#endif +#ifndef CYTHON_NCP_UNUSED +# if CYTHON_COMPILING_IN_CPYTHON +# define CYTHON_NCP_UNUSED +# else +# define CYTHON_NCP_UNUSED CYTHON_UNUSED +# endif +#endif +#define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) + +#ifndef CYTHON_INLINE + #if defined(__clang__) + #define CYTHON_INLINE __inline__ __attribute__ ((__unused__)) + #elif defined(__GNUC__) + #define CYTHON_INLINE __inline__ + #elif defined(_MSC_VER) + #define CYTHON_INLINE __inline + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_INLINE inline + #else + #define CYTHON_INLINE + #endif +#endif + +#if defined(WIN32) || defined(MS_WINDOWS) + #define _USE_MATH_DEFINES +#endif +#include +#ifdef NAN +#define __PYX_NAN() ((float) NAN) +#else +static CYTHON_INLINE float __PYX_NAN() { + float value; + memset(&value, 0xFF, sizeof(value)); + return value; +} +#endif +#if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL) +#define __Pyx_truncl trunc +#else +#define __Pyx_truncl truncl +#endif + + +#define __PYX_ERR(f_index, lineno, Ln_error) \ +{ \ + __pyx_filename = __pyx_f[f_index]; __pyx_lineno = lineno; __pyx_clineno = __LINE__; goto Ln_error; \ +} + +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) +#else + #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) +#endif + +#ifndef __PYX_EXTERN_C + #ifdef __cplusplus + #define __PYX_EXTERN_C extern "C" + #else + #define __PYX_EXTERN_C extern + #endif +#endif + +#define __PYX_HAVE__test__test_models +#define __PYX_HAVE_API__test__test_models +#include +#include +#include +#include "numpy/arrayobject.h" +#include "numpy/ufuncobject.h" +#include "pythread.h" +#ifdef _OPENMP +#include +#endif /* _OPENMP */ + +#ifdef PYREX_WITHOUT_ASSERTIONS +#define CYTHON_WITHOUT_ASSERTIONS +#endif + +typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding; + const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; + +#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 +#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0 +#define __PYX_DEFAULT_STRING_ENCODING "" +#define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString +#define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize +#define __Pyx_uchar_cast(c) ((unsigned char)c) +#define __Pyx_long_cast(x) ((long)x) +#define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\ + (sizeof(type) < sizeof(Py_ssize_t)) ||\ + (sizeof(type) > sizeof(Py_ssize_t) &&\ + likely(v < (type)PY_SSIZE_T_MAX ||\ + v == (type)PY_SSIZE_T_MAX) &&\ + (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\ + v == (type)PY_SSIZE_T_MIN))) ||\ + (sizeof(type) == sizeof(Py_ssize_t) &&\ + (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\ + v == (type)PY_SSIZE_T_MAX))) ) +#if defined (__cplusplus) && __cplusplus >= 201103L + #include + #define __Pyx_sst_abs(value) std::abs(value) +#elif SIZEOF_INT >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) abs(value) +#elif SIZEOF_LONG >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) labs(value) +#elif defined (_MSC_VER) && defined (_M_X64) + #define __Pyx_sst_abs(value) _abs64(value) +#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define __Pyx_sst_abs(value) llabs(value) +#elif defined (__GNUC__) + #define __Pyx_sst_abs(value) __builtin_llabs(value) +#else + #define __Pyx_sst_abs(value) ((value<0) ? -value : value) +#endif +static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); +static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); +#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) +#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) +#define __Pyx_PyBytes_FromString PyBytes_FromString +#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize +static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); +#if PY_MAJOR_VERSION < 3 + #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString + #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize +#else + #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString + #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize +#endif +#define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) +#define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) +#define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) +#define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s) +#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s) +#if PY_MAJOR_VERSION < 3 +static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) +{ + const Py_UNICODE *u_end = u; + while (*u_end++) ; + return (size_t)(u_end - u - 1); +} +#else +#define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen +#endif +#define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) +#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode +#define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode +#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj) +#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None) +#define __Pyx_PyBool_FromLong(b) ((b) ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False)) +static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); +static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x); +static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); +static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); +#if CYTHON_ASSUME_SAFE_MACROS +#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) +#else +#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) +#endif +#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) +#if PY_MAJOR_VERSION >= 3 +#define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x)) +#else +#define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x)) +#endif +#define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x)) +#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII +static int __Pyx_sys_getdefaultencoding_not_ascii; +static int __Pyx_init_sys_getdefaultencoding_params(void) { + PyObject* sys; + PyObject* default_encoding = NULL; + PyObject* ascii_chars_u = NULL; + PyObject* ascii_chars_b = NULL; + const char* default_encoding_c; + sys = PyImport_ImportModule("sys"); + if (!sys) goto bad; + default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL); + Py_DECREF(sys); + if (!default_encoding) goto bad; + default_encoding_c = PyBytes_AsString(default_encoding); + if (!default_encoding_c) goto bad; + if (strcmp(default_encoding_c, "ascii") == 0) { + __Pyx_sys_getdefaultencoding_not_ascii = 0; + } else { + char ascii_chars[128]; + int c; + for (c = 0; c < 128; c++) { + ascii_chars[c] = c; + } + __Pyx_sys_getdefaultencoding_not_ascii = 1; + ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); + if (!ascii_chars_u) goto bad; + ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); + if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { + PyErr_Format( + PyExc_ValueError, + "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", + default_encoding_c); + goto bad; + } + Py_DECREF(ascii_chars_u); + Py_DECREF(ascii_chars_b); + } + Py_DECREF(default_encoding); + return 0; +bad: + Py_XDECREF(default_encoding); + Py_XDECREF(ascii_chars_u); + Py_XDECREF(ascii_chars_b); + return -1; +} +#endif +#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 +#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) +#else +#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) +#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT +static char* __PYX_DEFAULT_STRING_ENCODING; +static int __Pyx_init_sys_getdefaultencoding_params(void) { + PyObject* sys; + PyObject* default_encoding = NULL; + char* default_encoding_c; + sys = PyImport_ImportModule("sys"); + if (!sys) goto bad; + default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); + Py_DECREF(sys); + if (!default_encoding) goto bad; + default_encoding_c = PyBytes_AsString(default_encoding); + if (!default_encoding_c) goto bad; + __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c)); + if (!__PYX_DEFAULT_STRING_ENCODING) goto bad; + strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); + Py_DECREF(default_encoding); + return 0; +bad: + Py_XDECREF(default_encoding); + return -1; +} +#endif +#endif + + +/* Test for GCC > 2.95 */ +#if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))) + #define likely(x) __builtin_expect(!!(x), 1) + #define unlikely(x) __builtin_expect(!!(x), 0) +#else /* !__GNUC__ or GCC < 2.95 */ + #define likely(x) (x) + #define unlikely(x) (x) +#endif /* __GNUC__ */ + +static PyObject *__pyx_m; +static PyObject *__pyx_d; +static PyObject *__pyx_b; +static PyObject *__pyx_empty_tuple; +static PyObject *__pyx_empty_bytes; +static PyObject *__pyx_empty_unicode; +static int __pyx_lineno; +static int __pyx_clineno = 0; +static const char * __pyx_cfilenm= __FILE__; +static const char *__pyx_filename; + +/* Header.proto */ +#if !defined(CYTHON_CCOMPLEX) + #if defined(__cplusplus) + #define CYTHON_CCOMPLEX 1 + #elif defined(_Complex_I) + #define CYTHON_CCOMPLEX 1 + #else + #define CYTHON_CCOMPLEX 0 + #endif +#endif +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + #include + #else + #include + #endif +#endif +#if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__) + #undef _Complex_I + #define _Complex_I 1.0fj +#endif + + +static const char *__pyx_f[] = { + "test/test_models.pyx", + "__init__.pxd", + "type.pxd", + "bool.pxd", + "complex.pxd", +}; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":725 + * # in Cython to enable them only on the right systems. + * + * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t + */ +typedef npy_int8 __pyx_t_5numpy_int8_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":726 + * + * ctypedef npy_int8 int8_t + * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< + * ctypedef npy_int32 int32_t + * ctypedef npy_int64 int64_t + */ +typedef npy_int16 __pyx_t_5numpy_int16_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":727 + * ctypedef npy_int8 int8_t + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< + * ctypedef npy_int64 int64_t + * #ctypedef npy_int96 int96_t + */ +typedef npy_int32 __pyx_t_5numpy_int32_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":728 + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t + * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< + * #ctypedef npy_int96 int96_t + * #ctypedef npy_int128 int128_t + */ +typedef npy_int64 __pyx_t_5numpy_int64_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":732 + * #ctypedef npy_int128 int128_t + * + * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< + * ctypedef npy_uint16 uint16_t + * ctypedef npy_uint32 uint32_t + */ +typedef npy_uint8 __pyx_t_5numpy_uint8_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":733 + * + * ctypedef npy_uint8 uint8_t + * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< + * ctypedef npy_uint32 uint32_t + * ctypedef npy_uint64 uint64_t + */ +typedef npy_uint16 __pyx_t_5numpy_uint16_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":734 + * ctypedef npy_uint8 uint8_t + * ctypedef npy_uint16 uint16_t + * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< + * ctypedef npy_uint64 uint64_t + * #ctypedef npy_uint96 uint96_t + */ +typedef npy_uint32 __pyx_t_5numpy_uint32_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":735 + * ctypedef npy_uint16 uint16_t + * ctypedef npy_uint32 uint32_t + * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< + * #ctypedef npy_uint96 uint96_t + * #ctypedef npy_uint128 uint128_t + */ +typedef npy_uint64 __pyx_t_5numpy_uint64_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":739 + * #ctypedef npy_uint128 uint128_t + * + * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< + * ctypedef npy_float64 float64_t + * #ctypedef npy_float80 float80_t + */ +typedef npy_float32 __pyx_t_5numpy_float32_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":740 + * + * ctypedef npy_float32 float32_t + * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< + * #ctypedef npy_float80 float80_t + * #ctypedef npy_float128 float128_t + */ +typedef npy_float64 __pyx_t_5numpy_float64_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":749 + * # The int types are mapped a bit surprising -- + * # numpy.int corresponds to 'l' and numpy.long to 'q' + * ctypedef npy_long int_t # <<<<<<<<<<<<<< + * ctypedef npy_longlong long_t + * ctypedef npy_longlong longlong_t + */ +typedef npy_long __pyx_t_5numpy_int_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":750 + * # numpy.int corresponds to 'l' and numpy.long to 'q' + * ctypedef npy_long int_t + * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< + * ctypedef npy_longlong longlong_t + * + */ +typedef npy_longlong __pyx_t_5numpy_long_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":751 + * ctypedef npy_long int_t + * ctypedef npy_longlong long_t + * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< + * + * ctypedef npy_ulong uint_t + */ +typedef npy_longlong __pyx_t_5numpy_longlong_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":753 + * ctypedef npy_longlong longlong_t + * + * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<< + * ctypedef npy_ulonglong ulong_t + * ctypedef npy_ulonglong ulonglong_t + */ +typedef npy_ulong __pyx_t_5numpy_uint_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":754 + * + * ctypedef npy_ulong uint_t + * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<< + * ctypedef npy_ulonglong ulonglong_t + * + */ +typedef npy_ulonglong __pyx_t_5numpy_ulong_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":755 + * ctypedef npy_ulong uint_t + * ctypedef npy_ulonglong ulong_t + * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<< + * + * ctypedef npy_intp intp_t + */ +typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":757 + * ctypedef npy_ulonglong ulonglong_t + * + * ctypedef npy_intp intp_t # <<<<<<<<<<<<<< + * ctypedef npy_uintp uintp_t + * + */ +typedef npy_intp __pyx_t_5numpy_intp_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":758 + * + * ctypedef npy_intp intp_t + * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<< + * + * ctypedef npy_double float_t + */ +typedef npy_uintp __pyx_t_5numpy_uintp_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":760 + * ctypedef npy_uintp uintp_t + * + * ctypedef npy_double float_t # <<<<<<<<<<<<<< + * ctypedef npy_double double_t + * ctypedef npy_longdouble longdouble_t + */ +typedef npy_double __pyx_t_5numpy_float_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":761 + * + * ctypedef npy_double float_t + * ctypedef npy_double double_t # <<<<<<<<<<<<<< + * ctypedef npy_longdouble longdouble_t + * + */ +typedef npy_double __pyx_t_5numpy_double_t; + +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":762 + * ctypedef npy_double float_t + * ctypedef npy_double double_t + * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<< + * + * ctypedef npy_cfloat cfloat_t + */ +typedef npy_longdouble __pyx_t_5numpy_longdouble_t; + +/* "ccd/models/lasso.pxd":6 + * from cpython cimport bool + * + * ctypedef np.float64_t STYPE_t # <<<<<<<<<<<<<< + * ctypedef float FTYPE_t + * ctypedef int ITYPE_t + */ +typedef __pyx_t_5numpy_float64_t __pyx_t_3ccd_6models_5lasso_STYPE_t; + +/* "ccd/models/lasso.pxd":7 + * + * ctypedef np.float64_t STYPE_t + * ctypedef float FTYPE_t # <<<<<<<<<<<<<< + * ctypedef int ITYPE_t + * ctypedef bool BTYPE_t + */ +typedef float __pyx_t_3ccd_6models_5lasso_FTYPE_t; + +/* "ccd/models/lasso.pxd":8 + * ctypedef np.float64_t STYPE_t + * ctypedef float FTYPE_t + * ctypedef int ITYPE_t # <<<<<<<<<<<<<< + * ctypedef bool BTYPE_t + * ctypedef np.long_t LTYPE_t + */ +typedef int __pyx_t_3ccd_6models_5lasso_ITYPE_t; + +/* "ccd/models/lasso.pxd":10 + * ctypedef int ITYPE_t + * ctypedef bool BTYPE_t + * ctypedef np.long_t LTYPE_t # <<<<<<<<<<<<<< + * + * + */ +typedef __pyx_t_5numpy_long_t __pyx_t_3ccd_6models_5lasso_LTYPE_t; +/* Declarations.proto */ +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + typedef ::std::complex< float > __pyx_t_float_complex; + #else + typedef float _Complex __pyx_t_float_complex; + #endif +#else + typedef struct { float real, imag; } __pyx_t_float_complex; +#endif +static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float); + +/* Declarations.proto */ +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + typedef ::std::complex< double > __pyx_t_double_complex; + #else + typedef double _Complex __pyx_t_double_complex; 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r = NULL; __Pyx_DECREF(tmp);}} while(0) + +/* PyObjectGetAttrStr.proto */ +#if CYTHON_USE_TYPE_SLOTS +static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { + PyTypeObject* tp = Py_TYPE(obj); + if (likely(tp->tp_getattro)) + return tp->tp_getattro(obj, attr_name); +#if PY_MAJOR_VERSION < 3 + if (likely(tp->tp_getattr)) + return tp->tp_getattr(obj, PyString_AS_STRING(attr_name)); +#endif + return PyObject_GetAttr(obj, attr_name); +} +#else +#define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n) +#endif + +/* GetBuiltinName.proto */ +static PyObject *__Pyx_GetBuiltinName(PyObject *name); + +/* GetModuleGlobalName.proto */ +static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name); + +/* PyCFunctionFastCall.proto */ +#if CYTHON_FAST_PYCCALL +static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs); +#else +#define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL) +#endif + +/* PyFunctionFastCall.proto */ +#if CYTHON_FAST_PYCALL +#define __Pyx_PyFunction_FastCall(func, args, nargs)\ + __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL) +#if 1 || PY_VERSION_HEX < 0x030600B1 +static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs); 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(PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\ + __Pyx_GetItemInt_Generic(o, to_py_func(i)))) +#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ + (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, + int wraparound, int boundscheck); +#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ + (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, + int wraparound, int boundscheck); +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, + int is_list, int wraparound, int boundscheck); + +/* ExtTypeTest.proto */ +static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); + +/* PyIntBinop.proto */ +#if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace); +#else +#define __Pyx_PyInt_SubtractObjC(op1, op2, intval, inplace)\ + (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2)) +#endif + +/* PyIntBinop.proto */ +#if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, long intval, int inplace); +#else +#define __Pyx_PyInt_EqObjC(op1, op2, intval, inplace)\ + PyObject_RichCompare(op1, op2, Py_EQ) + #endif + +/* PyThreadStateGet.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate; +#define __Pyx_PyThreadState_assign __pyx_tstate = PyThreadState_GET(); +#else +#define __Pyx_PyThreadState_declare +#define __Pyx_PyThreadState_assign +#endif + +/* PyErrFetchRestore.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else +#define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) +#endif + +/* RaiseException.proto */ +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); + +/* DictGetItem.proto */ +#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY +static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { + PyObject *value; + value = PyDict_GetItemWithError(d, key); + if (unlikely(!value)) { + if (!PyErr_Occurred()) { + PyObject* args = PyTuple_Pack(1, key); + if (likely(args)) + PyErr_SetObject(PyExc_KeyError, args); + Py_XDECREF(args); + } + return NULL; + } + Py_INCREF(value); + return value; +} +#else + #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) +#endif + +/* RaiseTooManyValuesToUnpack.proto */ +static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); + +/* RaiseNeedMoreValuesToUnpack.proto */ +static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); + +/* RaiseNoneIterError.proto */ +static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); + +/* SaveResetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +#else +#define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb) +#define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb) +#endif + +/* PyErrExceptionMatches.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err) +static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err); +#else +#define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err) +#endif + +/* GetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb) +static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else +static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); +#endif + +/* Import.proto */ +static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); + +/* ImportFrom.proto */ +static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); + +/* CodeObjectCache.proto */ +typedef struct { + PyCodeObject* code_object; + int code_line; +} __Pyx_CodeObjectCacheEntry; +struct __Pyx_CodeObjectCache { + int count; + int max_count; + __Pyx_CodeObjectCacheEntry* entries; +}; +static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL}; +static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); +static PyCodeObject *__pyx_find_code_object(int code_line); +static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); + +/* AddTraceback.proto */ +static void __Pyx_AddTraceback(const char *funcname, int c_line, + int py_line, const char *filename); + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value); + +/* RealImag.proto */ +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + #define __Pyx_CREAL(z) ((z).real()) + #define __Pyx_CIMAG(z) ((z).imag()) + #else + #define __Pyx_CREAL(z) (__real__(z)) + #define __Pyx_CIMAG(z) (__imag__(z)) + #endif +#else + #define __Pyx_CREAL(z) ((z).real) + #define __Pyx_CIMAG(z) ((z).imag) +#endif +#if defined(__cplusplus) && CYTHON_CCOMPLEX\ + && (defined(_WIN32) || defined(__clang__) || (defined(__GNUC__) && (__GNUC__ >= 5 || __GNUC__ == 4 && __GNUC_MINOR__ >= 4 )) || __cplusplus >= 201103) + #define __Pyx_SET_CREAL(z,x) ((z).real(x)) + #define __Pyx_SET_CIMAG(z,y) ((z).imag(y)) +#else + #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x) + #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y) +#endif + +/* Arithmetic.proto */ +#if CYTHON_CCOMPLEX + #define __Pyx_c_eq_float(a, b) ((a)==(b)) + #define __Pyx_c_sum_float(a, b) ((a)+(b)) + #define __Pyx_c_diff_float(a, b) ((a)-(b)) + #define __Pyx_c_prod_float(a, b) ((a)*(b)) + #define __Pyx_c_quot_float(a, b) ((a)/(b)) + #define __Pyx_c_neg_float(a) (-(a)) + #ifdef __cplusplus + #define __Pyx_c_is_zero_float(z) ((z)==(float)0) + #define __Pyx_c_conj_float(z) (::std::conj(z)) + #if 1 + #define __Pyx_c_abs_float(z) (::std::abs(z)) + #define __Pyx_c_pow_float(a, b) (::std::pow(a, b)) + #endif + #else + #define __Pyx_c_is_zero_float(z) ((z)==0) + #define __Pyx_c_conj_float(z) (conjf(z)) + #if 1 + #define __Pyx_c_abs_float(z) (cabsf(z)) + #define __Pyx_c_pow_float(a, b) (cpowf(a, b)) + #endif + #endif +#else + static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex, __pyx_t_float_complex); 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+ __Pyx_XDECREF(__pyx_t_3); + if (__pyx_m) { + if (__pyx_d) { + __Pyx_AddTraceback("init test.test_models", __pyx_clineno, __pyx_lineno, __pyx_filename); + } + Py_DECREF(__pyx_m); __pyx_m = 0; + } else if (!PyErr_Occurred()) { + PyErr_SetString(PyExc_ImportError, "init test.test_models"); + } + __pyx_L0:; + __Pyx_RefNannyFinishContext(); + #if PY_MAJOR_VERSION < 3 + return; + #else + return __pyx_m; + #endif +} + +/* --- Runtime support code --- */ +/* Refnanny */ +#if CYTHON_REFNANNY +static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) { + PyObject *m = NULL, *p = NULL; + void *r = NULL; + m = PyImport_ImportModule((char *)modname); + if (!m) goto end; + p = PyObject_GetAttrString(m, (char *)"RefNannyAPI"); + if (!p) goto end; + r = PyLong_AsVoidPtr(p); +end: + Py_XDECREF(p); + Py_XDECREF(m); + return (__Pyx_RefNannyAPIStruct *)r; +} +#endif + +/* GetBuiltinName */ +static PyObject *__Pyx_GetBuiltinName(PyObject *name) { + PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name); 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+ assert(METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST))); + assert(nargs >= 0); + assert(nargs == 0 || args != NULL); + /* _PyCFunction_FastCallDict() must not be called with an exception set, + because it may clear it (directly or indirectly) and so the + caller loses its exception */ + assert(!PyErr_Occurred()); + return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL); +} +#endif // CYTHON_FAST_PYCCALL + +/* PyFunctionFastCall */ + #if CYTHON_FAST_PYCALL +#include "frameobject.h" +static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na, + PyObject *globals) { + PyFrameObject *f; + PyThreadState *tstate = PyThreadState_GET(); + PyObject **fastlocals; + Py_ssize_t i; + PyObject *result; + assert(globals != NULL); + /* XXX Perhaps we should create a specialized + PyFrame_New() that doesn't take locals, but does + take builtins without sanity checking them. + */ + assert(tstate != NULL); + f = PyFrame_New(tstate, co, globals, NULL); 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PyDict_Size(kwargs) : 0; + if (Py_EnterRecursiveCall((char*)" while calling a Python object")) { + return NULL; + } + if ( +#if PY_MAJOR_VERSION >= 3 + co->co_kwonlyargcount == 0 && +#endif + likely(kwargs == NULL || nk == 0) && + co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) { + if (argdefs == NULL && co->co_argcount == nargs) { + result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals); + goto done; + } + else if (nargs == 0 && argdefs != NULL + && co->co_argcount == Py_SIZE(argdefs)) { + /* function called with no arguments, but all parameters have + a default value: use default values as arguments .*/ + args = &PyTuple_GET_ITEM(argdefs, 0); + result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals); + goto done; + } + } + if (kwargs != NULL) { + Py_ssize_t pos, i; + kwtuple = PyTuple_New(2 * nk); + if (kwtuple == NULL) { + result = NULL; + goto done; + } + k = &PyTuple_GET_ITEM(kwtuple, 0); + pos = i = 0; + while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) { + Py_INCREF(k[i]); + Py_INCREF(k[i+1]); + i += 2; + } + nk = i / 2; + } + else { + kwtuple = NULL; + k = NULL; + } + closure = PyFunction_GET_CLOSURE(func); +#if PY_MAJOR_VERSION >= 3 + kwdefs = PyFunction_GET_KW_DEFAULTS(func); +#endif + if (argdefs != NULL) { + d = &PyTuple_GET_ITEM(argdefs, 0); + nd = Py_SIZE(argdefs); + } + else { + d = NULL; + nd = 0; + } +#if PY_MAJOR_VERSION >= 3 + result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL, + args, nargs, + k, (int)nk, + d, (int)nd, kwdefs, closure); +#else + result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL, + args, nargs, + k, (int)nk, + d, (int)nd, closure); +#endif + Py_XDECREF(kwtuple); +done: + Py_LeaveRecursiveCall(); + return result; +} +#endif // CPython < 3.6 +#endif // CYTHON_FAST_PYCALL + +/* PyObjectCall */ + #if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { + PyObject *result; + ternaryfunc call = func->ob_type->tp_call; + if (unlikely(!call)) + return PyObject_Call(func, arg, kw); + if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) + return NULL; + result = (*call)(func, arg, kw); + Py_LeaveRecursiveCall(); + if (unlikely(!result) && unlikely(!PyErr_Occurred())) { + PyErr_SetString( + PyExc_SystemError, + "NULL result without error in PyObject_Call"); + } + return result; +} +#endif + +/* PyObjectCallMethO */ + #if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { + PyObject *self, *result; + PyCFunction cfunc; + cfunc = PyCFunction_GET_FUNCTION(func); + self = PyCFunction_GET_SELF(func); + if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) + return NULL; + result = cfunc(self, arg); + Py_LeaveRecursiveCall(); + if (unlikely(!result) && unlikely(!PyErr_Occurred())) { + PyErr_SetString( + PyExc_SystemError, + "NULL result without error in PyObject_Call"); + } + return result; +} +#endif + +/* PyObjectCallOneArg */ + #if CYTHON_COMPILING_IN_CPYTHON +static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) { + PyObject *result; + PyObject *args = PyTuple_New(1); + if (unlikely(!args)) return NULL; + Py_INCREF(arg); + PyTuple_SET_ITEM(args, 0, arg); + result = __Pyx_PyObject_Call(func, args, NULL); + Py_DECREF(args); + return result; +} +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { +#if CYTHON_FAST_PYCALL + if (PyFunction_Check(func)) { + return __Pyx_PyFunction_FastCall(func, &arg, 1); + } +#endif +#ifdef __Pyx_CyFunction_USED + if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { +#else + if (likely(PyCFunction_Check(func))) { +#endif + if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { + return __Pyx_PyObject_CallMethO(func, arg); +#if CYTHON_FAST_PYCCALL + } else if (PyCFunction_GET_FLAGS(func) & METH_FASTCALL) { + return __Pyx_PyCFunction_FastCall(func, &arg, 1); +#endif + } + } + return __Pyx__PyObject_CallOneArg(func, arg); +} +#else +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { + PyObject *result; + PyObject *args = PyTuple_Pack(1, arg); + if (unlikely(!args)) return NULL; + result = __Pyx_PyObject_Call(func, args, NULL); + Py_DECREF(args); + return result; +} +#endif + +/* GetItemInt */ + static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { + PyObject *r; + if (!j) return NULL; + r = PyObject_GetItem(o, j); + Py_DECREF(j); + return r; +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + if (wraparound & unlikely(i < 0)) i += PyList_GET_SIZE(o); + if ((!boundscheck) || likely((0 <= i) & (i < PyList_GET_SIZE(o)))) { + PyObject *r = PyList_GET_ITEM(o, i); + Py_INCREF(r); + return r; + } + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +#else + return PySequence_GetItem(o, i); +#endif +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + if (wraparound & unlikely(i < 0)) i += PyTuple_GET_SIZE(o); + if ((!boundscheck) || likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, i); + Py_INCREF(r); + return r; + } + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +#else + return PySequence_GetItem(o, i); +#endif +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS + if (is_list || PyList_CheckExact(o)) { + Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); + if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) { + PyObject *r = PyList_GET_ITEM(o, n); + Py_INCREF(r); + return r; + } + } + else if (PyTuple_CheckExact(o)) { + Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); + if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, n); + Py_INCREF(r); + return r; + } + } else { + PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; + if (likely(m && m->sq_item)) { + if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { + Py_ssize_t l = m->sq_length(o); + if (likely(l >= 0)) { + i += l; + } else { + if (!PyErr_ExceptionMatches(PyExc_OverflowError)) + return NULL; + PyErr_Clear(); + } + } + return m->sq_item(o, i); + } + } +#else + if (is_list || PySequence_Check(o)) { + return PySequence_GetItem(o, i); + } +#endif + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +} + +/* ExtTypeTest */ + static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + if (likely(PyObject_TypeCheck(obj, type))) + return 1; + PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", + Py_TYPE(obj)->tp_name, type->tp_name); + return 0; +} + +/* PyIntBinop */ + #if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { + #if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(op1))) { + const long b = intval; + long x; + long a = PyInt_AS_LONG(op1); + x = (long)((unsigned long)a - b); + if (likely((x^a) >= 0 || (x^~b) >= 0)) + return PyInt_FromLong(x); + return PyLong_Type.tp_as_number->nb_subtract(op1, op2); + } + #endif + #if CYTHON_USE_PYLONG_INTERNALS + if (likely(PyLong_CheckExact(op1))) { + const long b = intval; + long a, x; +#ifdef HAVE_LONG_LONG + const PY_LONG_LONG llb = intval; + PY_LONG_LONG lla, llx; +#endif + const digit* digits = ((PyLongObject*)op1)->ob_digit; + const Py_ssize_t size = Py_SIZE(op1); + if (likely(__Pyx_sst_abs(size) <= 1)) { + a = likely(size) ? digits[0] : 0; + if (size == -1) a = -a; + } else { + switch (size) { + case -2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case 2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case -3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case 3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case -4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case 4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + default: return PyLong_Type.tp_as_number->nb_subtract(op1, op2); + } + } + x = a - b; + return PyLong_FromLong(x); +#ifdef HAVE_LONG_LONG + long_long: + llx = lla - llb; + return PyLong_FromLongLong(llx); +#endif + + + } + #endif + if (PyFloat_CheckExact(op1)) { + const long b = intval; + double a = PyFloat_AS_DOUBLE(op1); + double result; + PyFPE_START_PROTECT("subtract", return NULL) + result = ((double)a) - (double)b; + PyFPE_END_PROTECT(result) + return PyFloat_FromDouble(result); + } + return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2); +} +#endif + +/* PyIntBinop */ + #if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { + if (op1 == op2) { + Py_RETURN_TRUE; + } + #if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(op1))) { + const long b = intval; + long a = PyInt_AS_LONG(op1); + if (a == b) { + Py_RETURN_TRUE; + } else { + Py_RETURN_FALSE; + } + } + #endif + #if CYTHON_USE_PYLONG_INTERNALS + if (likely(PyLong_CheckExact(op1))) { + const long b = intval; + long a; + const digit* digits = ((PyLongObject*)op1)->ob_digit; + const Py_ssize_t size = Py_SIZE(op1); + if (likely(__Pyx_sst_abs(size) <= 1)) { + a = likely(size) ? digits[0] : 0; + if (size == -1) a = -a; + } else { + switch (size) { + case -2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + } + case 2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + } + case -3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + } + case 3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + } + case -4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + } + case 4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + } + #if PyLong_SHIFT < 30 && PyLong_SHIFT != 15 + default: return PyLong_Type.tp_richcompare(op1, op2, Py_EQ); + #else + default: Py_RETURN_FALSE; + #endif + } + } + if (a == b) { + Py_RETURN_TRUE; + } else { + Py_RETURN_FALSE; + } + } + #endif + if (PyFloat_CheckExact(op1)) { + const long b = intval; + double a = PyFloat_AS_DOUBLE(op1); + if ((double)a == (double)b) { + Py_RETURN_TRUE; + } else { + Py_RETURN_FALSE; + } + } + return PyObject_RichCompare(op1, op2, Py_EQ); +} +#endif + +/* PyErrFetchRestore */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + tmp_type = tstate->curexc_type; + tmp_value = tstate->curexc_value; + tmp_tb = tstate->curexc_traceback; + tstate->curexc_type = type; + tstate->curexc_value = value; + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +} +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { + *type = tstate->curexc_type; + *value = tstate->curexc_value; + *tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +} +#endif + +/* RaiseException */ + #if PY_MAJOR_VERSION < 3 +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, + CYTHON_UNUSED PyObject *cause) { + __Pyx_PyThreadState_declare + Py_XINCREF(type); + if (!value || value == Py_None) + value = NULL; + else + Py_INCREF(value); + if (!tb || tb == Py_None) + tb = NULL; + else { + Py_INCREF(tb); + if (!PyTraceBack_Check(tb)) { + PyErr_SetString(PyExc_TypeError, + "raise: arg 3 must be a traceback or None"); + goto raise_error; + } + } + if (PyType_Check(type)) { +#if CYTHON_COMPILING_IN_PYPY + if (!value) { + Py_INCREF(Py_None); + value = Py_None; + } +#endif + PyErr_NormalizeException(&type, &value, &tb); + } else { + if (value) { + PyErr_SetString(PyExc_TypeError, + "instance exception may not have a separate value"); + goto raise_error; + } + value = type; + type = (PyObject*) Py_TYPE(type); + Py_INCREF(type); + if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { + PyErr_SetString(PyExc_TypeError, + "raise: exception class must be a subclass of BaseException"); + goto raise_error; + } + } + __Pyx_PyThreadState_assign + __Pyx_ErrRestore(type, value, tb); + return; +raise_error: + Py_XDECREF(value); + Py_XDECREF(type); + Py_XDECREF(tb); + return; +} +#else +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { + PyObject* owned_instance = NULL; + if (tb == Py_None) { + tb = 0; + } else if (tb && !PyTraceBack_Check(tb)) { + PyErr_SetString(PyExc_TypeError, + "raise: arg 3 must be a traceback or None"); + goto bad; + } + if (value == Py_None) + value = 0; + if (PyExceptionInstance_Check(type)) { + if (value) { + PyErr_SetString(PyExc_TypeError, + "instance exception may not have a separate value"); + goto bad; + } + value = type; + type = (PyObject*) Py_TYPE(value); + } else if (PyExceptionClass_Check(type)) { + PyObject *instance_class = NULL; + if (value && PyExceptionInstance_Check(value)) { + instance_class = (PyObject*) Py_TYPE(value); + if (instance_class != type) { + int is_subclass = PyObject_IsSubclass(instance_class, type); + if (!is_subclass) { + instance_class = NULL; + } else if (unlikely(is_subclass == -1)) { + goto bad; + } else { + type = instance_class; + } + } + } + if (!instance_class) { + PyObject *args; + if (!value) + args = PyTuple_New(0); + else if (PyTuple_Check(value)) { + Py_INCREF(value); + args = value; + } else + args = PyTuple_Pack(1, value); + if (!args) + goto bad; + owned_instance = PyObject_Call(type, args, NULL); + Py_DECREF(args); + if (!owned_instance) + goto bad; + value = owned_instance; + if (!PyExceptionInstance_Check(value)) { + PyErr_Format(PyExc_TypeError, + "calling %R should have returned an instance of " + "BaseException, not %R", + type, Py_TYPE(value)); + goto bad; + } + } + } else { + PyErr_SetString(PyExc_TypeError, + "raise: exception class must be a subclass of BaseException"); + goto bad; + } +#if PY_VERSION_HEX >= 0x03030000 + if (cause) { +#else + if (cause && cause != Py_None) { +#endif + PyObject *fixed_cause; + if (cause == Py_None) { + fixed_cause = NULL; + } else if (PyExceptionClass_Check(cause)) { + fixed_cause = PyObject_CallObject(cause, NULL); + if (fixed_cause == NULL) + goto bad; + } else if (PyExceptionInstance_Check(cause)) { + fixed_cause = cause; + Py_INCREF(fixed_cause); + } else { + PyErr_SetString(PyExc_TypeError, + "exception causes must derive from " + "BaseException"); + goto bad; + } + PyException_SetCause(value, fixed_cause); + } + PyErr_SetObject(type, value); + if (tb) { +#if CYTHON_COMPILING_IN_PYPY + PyObject *tmp_type, *tmp_value, *tmp_tb; + PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb); + Py_INCREF(tb); + PyErr_Restore(tmp_type, tmp_value, tb); + Py_XDECREF(tmp_tb); +#else + PyThreadState *tstate = PyThreadState_GET(); + PyObject* tmp_tb = tstate->curexc_traceback; + if (tb != tmp_tb) { + Py_INCREF(tb); + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_tb); + } +#endif + } +bad: + Py_XDECREF(owned_instance); + return; +} +#endif + +/* RaiseTooManyValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { + PyErr_Format(PyExc_ValueError, + "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); +} + +/* RaiseNeedMoreValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { + PyErr_Format(PyExc_ValueError, + "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", + index, (index == 1) ? "" : "s"); +} + +/* RaiseNoneIterError */ + static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { + PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); +} + +/* SaveResetException */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { + *type = tstate->exc_type; + *value = tstate->exc_value; + *tb = tstate->exc_traceback; + Py_XINCREF(*type); + Py_XINCREF(*value); + Py_XINCREF(*tb); +} +static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + tmp_type = tstate->exc_type; + tmp_value = tstate->exc_value; + tmp_tb = tstate->exc_traceback; + tstate->exc_type = type; + tstate->exc_value = value; + tstate->exc_traceback = tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +} +#endif + +/* PyErrExceptionMatches */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) { + PyObject *exc_type = tstate->curexc_type; + if (exc_type == err) return 1; + if (unlikely(!exc_type)) return 0; + return PyErr_GivenExceptionMatches(exc_type, err); +} +#endif + +/* GetException */ + #if CYTHON_FAST_THREAD_STATE +static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { +#else +static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { +#endif + PyObject *local_type, *local_value, *local_tb; +#if CYTHON_FAST_THREAD_STATE + PyObject *tmp_type, *tmp_value, *tmp_tb; + local_type = tstate->curexc_type; + local_value = tstate->curexc_value; + local_tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +#else + PyErr_Fetch(&local_type, &local_value, &local_tb); +#endif + PyErr_NormalizeException(&local_type, &local_value, &local_tb); +#if CYTHON_FAST_THREAD_STATE + if (unlikely(tstate->curexc_type)) +#else + if (unlikely(PyErr_Occurred())) +#endif + goto bad; + #if PY_MAJOR_VERSION >= 3 + if (local_tb) { + if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0)) + goto bad; + } + #endif + Py_XINCREF(local_tb); + Py_XINCREF(local_type); + Py_XINCREF(local_value); + *type = local_type; + *value = local_value; + *tb = local_tb; +#if CYTHON_FAST_THREAD_STATE + tmp_type = tstate->exc_type; + tmp_value = tstate->exc_value; + tmp_tb = tstate->exc_traceback; + tstate->exc_type = local_type; + tstate->exc_value = local_value; + tstate->exc_traceback = local_tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +#else + PyErr_SetExcInfo(local_type, local_value, local_tb); +#endif + return 0; +bad: + *type = 0; + *value = 0; + *tb = 0; + Py_XDECREF(local_type); + Py_XDECREF(local_value); + Py_XDECREF(local_tb); + return -1; +} + +/* Import */ + static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { + PyObject *empty_list = 0; + PyObject *module = 0; + PyObject *global_dict = 0; + PyObject *empty_dict = 0; + PyObject *list; + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_import; + py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); + if (!py_import) + goto bad; + #endif + if (from_list) + list = from_list; + else { + empty_list = PyList_New(0); + if (!empty_list) + goto bad; + list = empty_list; + } + global_dict = PyModule_GetDict(__pyx_m); + if (!global_dict) + goto bad; + empty_dict = PyDict_New(); + if (!empty_dict) + goto bad; + { + #if PY_MAJOR_VERSION >= 3 + if (level == -1) { + if (strchr(__Pyx_MODULE_NAME, '.')) { + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_level = PyInt_FromLong(1); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, 1); + #endif + if (!module) { + if (!PyErr_ExceptionMatches(PyExc_ImportError)) + goto bad; + PyErr_Clear(); + } + } + level = 0; + } + #endif + if (!module) { + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_level = PyInt_FromLong(level); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, level); + #endif + } + } +bad: + #if PY_VERSION_HEX < 0x03030000 + Py_XDECREF(py_import); + #endif + Py_XDECREF(empty_list); + Py_XDECREF(empty_dict); + return module; +} + +/* ImportFrom */ + static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { + PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); + if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { + PyErr_Format(PyExc_ImportError, + #if PY_MAJOR_VERSION < 3 + "cannot import name %.230s", PyString_AS_STRING(name)); + #else + "cannot import name %S", name); + #endif + } + return value; +} + +/* CodeObjectCache */ + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + int start = 0, mid = 0, end = count - 1; + if (end >= 0 && code_line > entries[end].code_line) { + return count; + } + while (start < end) { + mid = start + (end - start) / 2; + if (code_line < entries[mid].code_line) { + end = mid; + } else if (code_line > entries[mid].code_line) { + start = mid + 1; + } else { + return mid; + } + } + if (code_line <= entries[mid].code_line) { + return mid; + } else { + return mid + 1; + } +} +static PyCodeObject *__pyx_find_code_object(int code_line) { + PyCodeObject* code_object; + int pos; + if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { + return NULL; + } + pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); + if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { + return NULL; + } + code_object = __pyx_code_cache.entries[pos].code_object; + Py_INCREF(code_object); + return code_object; +} +static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { + int pos, i; + __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; + if (unlikely(!code_line)) { + return; + } + if (unlikely(!entries)) { + entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); + if (likely(entries)) { + __pyx_code_cache.entries = entries; + __pyx_code_cache.max_count = 64; + __pyx_code_cache.count = 1; + entries[0].code_line = code_line; + entries[0].code_object = code_object; + Py_INCREF(code_object); + } + return; + } + pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); + if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { + PyCodeObject* tmp = entries[pos].code_object; + entries[pos].code_object = code_object; + Py_DECREF(tmp); + return; + } + if (__pyx_code_cache.count == __pyx_code_cache.max_count) { + int new_max = __pyx_code_cache.max_count + 64; + entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( + __pyx_code_cache.entries, (size_t)new_max*sizeof(__Pyx_CodeObjectCacheEntry)); + if (unlikely(!entries)) { + return; + } + __pyx_code_cache.entries = entries; + __pyx_code_cache.max_count = new_max; + } + for (i=__pyx_code_cache.count; i>pos; i--) { + entries[i] = entries[i-1]; + } + entries[pos].code_line = code_line; + entries[pos].code_object = code_object; + __pyx_code_cache.count++; + Py_INCREF(code_object); +} + +/* AddTraceback */ + #include "compile.h" +#include "frameobject.h" +#include "traceback.h" +static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( + const char *funcname, int c_line, + int py_line, const char *filename) { + PyCodeObject *py_code = 0; + PyObject *py_srcfile = 0; + PyObject *py_funcname = 0; + #if PY_MAJOR_VERSION < 3 + py_srcfile = PyString_FromString(filename); + #else + py_srcfile = PyUnicode_FromString(filename); + #endif + if (!py_srcfile) goto bad; + if (c_line) { + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); + #else + py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); + #endif + } + else { + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromString(funcname); + #else + py_funcname = PyUnicode_FromString(funcname); + #endif + } + if (!py_funcname) goto bad; + py_code = __Pyx_PyCode_New( + 0, + 0, + 0, + 0, + 0, + __pyx_empty_bytes, /*PyObject *code,*/ + __pyx_empty_tuple, /*PyObject *consts,*/ + __pyx_empty_tuple, /*PyObject *names,*/ + __pyx_empty_tuple, /*PyObject *varnames,*/ + __pyx_empty_tuple, /*PyObject *freevars,*/ + __pyx_empty_tuple, /*PyObject *cellvars,*/ + py_srcfile, /*PyObject *filename,*/ + py_funcname, /*PyObject *name,*/ + py_line, + __pyx_empty_bytes /*PyObject *lnotab*/ + ); + Py_DECREF(py_srcfile); + Py_DECREF(py_funcname); + return py_code; +bad: + Py_XDECREF(py_srcfile); + Py_XDECREF(py_funcname); + return NULL; +} +static void __Pyx_AddTraceback(const char *funcname, int c_line, + int py_line, const char *filename) { + PyCodeObject *py_code = 0; + PyFrameObject *py_frame = 0; + py_code = __pyx_find_code_object(c_line ? c_line : py_line); + if (!py_code) { + py_code = __Pyx_CreateCodeObjectForTraceback( + funcname, c_line, py_line, filename); + if (!py_code) goto bad; + __pyx_insert_code_object(c_line ? c_line : py_line, py_code); + } + py_frame = PyFrame_New( + PyThreadState_GET(), /*PyThreadState *tstate,*/ + py_code, /*PyCodeObject *code,*/ + __pyx_d, /*PyObject *globals,*/ + 0 /*PyObject *locals*/ + ); + if (!py_frame) goto bad; + __Pyx_PyFrame_SetLineNumber(py_frame, py_line); + PyTraceBack_Here(py_frame); +bad: + Py_XDECREF(py_code); + Py_XDECREF(py_frame); +} + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + const long neg_one = (long) -1, const_zero = (long) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(long) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(long) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(long) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(long), + little, !is_unsigned); + } +} + +/* CIntFromPyVerify */ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) +#define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ + __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) +#define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\ + {\ + func_type value = func_value;\ + if (sizeof(target_type) < sizeof(func_type)) {\ + if (unlikely(value != (func_type) (target_type) value)) {\ + func_type zero = 0;\ + if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\ + return (target_type) -1;\ + if (is_unsigned && unlikely(value < zero))\ + goto raise_neg_overflow;\ + else\ + goto raise_overflow;\ + }\ + }\ + return (target_type) value;\ + } + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { + const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(Py_intptr_t) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(Py_intptr_t) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(Py_intptr_t) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(Py_intptr_t) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(Py_intptr_t), + little, !is_unsigned); + } +} + +/* Declarations */ + #if CYTHON_CCOMPLEX + #ifdef __cplusplus + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + return ::std::complex< float >(x, y); + } + #else + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + return x + y*(__pyx_t_float_complex)_Complex_I; + } + #endif +#else + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + __pyx_t_float_complex z; + z.real = x; + z.imag = y; + return z; + } +#endif + +/* Arithmetic */ + #if CYTHON_CCOMPLEX +#else + static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + return (a.real == b.real) && (a.imag == b.imag); + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real + b.real; + z.imag = a.imag + b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real - b.real; + z.imag = a.imag - b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real * b.real - a.imag * b.imag; + z.imag = a.real * b.imag + a.imag * b.real; + return z; + } + #if 1 + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + if (b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real); + } else if (fabsf(b.real) >= fabsf(b.imag)) { + if (b.real == 0 && b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.imag); + } else { + float r = b.imag / b.real; + float s = 1.0 / (b.real + b.imag * r); + return __pyx_t_float_complex_from_parts( + (a.real + a.imag * r) * s, (a.imag - a.real * r) * s); + } + } else { + float r = b.real / b.imag; + float s = 1.0 / (b.imag + b.real * r); + return __pyx_t_float_complex_from_parts( + (a.real * r + a.imag) * s, (a.imag * r - a.real) * s); + } + } + #else + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + if (b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real); + } else { + float denom = b.real * b.real + b.imag * b.imag; + return __pyx_t_float_complex_from_parts( + (a.real * b.real + a.imag * b.imag) / denom, + (a.imag * b.real - a.real * b.imag) / denom); + } + } + #endif + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex a) { + __pyx_t_float_complex z; + z.real = -a.real; + z.imag = -a.imag; + return z; + } + static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex a) { + return (a.real == 0) && (a.imag == 0); + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex a) { + __pyx_t_float_complex z; + z.real = a.real; + z.imag = -a.imag; + return z; + } + #if 1 + static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex z) { + #if !defined(HAVE_HYPOT) || defined(_MSC_VER) + return sqrtf(z.real*z.real + z.imag*z.imag); + #else + return hypotf(z.real, z.imag); + #endif + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + float r, lnr, theta, z_r, z_theta; + if (b.imag == 0 && b.real == (int)b.real) { + if (b.real < 0) { + float denom = a.real * a.real + a.imag * a.imag; + a.real = a.real / denom; + a.imag = -a.imag / denom; + b.real = -b.real; + } + switch ((int)b.real) { + case 0: + z.real = 1; + z.imag = 0; + return z; + case 1: + return a; + case 2: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(a, a); + case 3: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(z, a); + case 4: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(z, z); + } + } + if (a.imag == 0) { + if (a.real == 0) { + return a; + } else if (b.imag == 0) { + z.real = powf(a.real, b.real); + z.imag = 0; + return z; + } else if (a.real > 0) { + r = a.real; + theta = 0; + } else { + r = -a.real; + theta = atan2f(0, -1); + } + } else { + r = __Pyx_c_abs_float(a); + theta = atan2f(a.imag, a.real); + } + lnr = logf(r); + z_r = expf(lnr * b.real - theta * b.imag); + z_theta = theta * b.real + lnr * b.imag; + z.real = z_r * cosf(z_theta); + z.imag = z_r * sinf(z_theta); + return z; + } + #endif +#endif + +/* Declarations */ + #if CYTHON_CCOMPLEX + #ifdef __cplusplus + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + return ::std::complex< double >(x, y); + } + #else + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + return x + y*(__pyx_t_double_complex)_Complex_I; + } + #endif +#else + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + __pyx_t_double_complex z; + z.real = x; + z.imag = y; + return z; + } +#endif + +/* Arithmetic */ + #if CYTHON_CCOMPLEX +#else + static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + return (a.real == b.real) && (a.imag == b.imag); + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real + b.real; + z.imag = a.imag + b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real - b.real; + z.imag = a.imag - b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real * b.real - a.imag * b.imag; + z.imag = a.real * b.imag + a.imag * b.real; + return z; + } + #if 1 + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + if (b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real); + } else if (fabs(b.real) >= fabs(b.imag)) { + if (b.real == 0 && b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.imag); + } else { + double r = b.imag / b.real; + double s = 1.0 / (b.real + b.imag * r); + return __pyx_t_double_complex_from_parts( + (a.real + a.imag * r) * s, (a.imag - a.real * r) * s); + } + } else { + double r = b.real / b.imag; + double s = 1.0 / (b.imag + b.real * r); + return __pyx_t_double_complex_from_parts( + (a.real * r + a.imag) * s, (a.imag * r - a.real) * s); + } + } + #else + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + if (b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real); + } else { + double denom = b.real * b.real + b.imag * b.imag; + return __pyx_t_double_complex_from_parts( + (a.real * b.real + a.imag * b.imag) / denom, + (a.imag * b.real - a.real * b.imag) / denom); + } + } + #endif + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex a) { + __pyx_t_double_complex z; + z.real = -a.real; + z.imag = -a.imag; + return z; + } + static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex a) { + return (a.real == 0) && (a.imag == 0); + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex a) { + __pyx_t_double_complex z; + z.real = a.real; + z.imag = -a.imag; + return z; + } + #if 1 + static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex z) { + #if !defined(HAVE_HYPOT) || defined(_MSC_VER) + return sqrt(z.real*z.real + z.imag*z.imag); + #else + return hypot(z.real, z.imag); + #endif + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + double r, lnr, theta, z_r, z_theta; + if (b.imag == 0 && b.real == (int)b.real) { + if (b.real < 0) { + double denom = a.real * a.real + a.imag * a.imag; + a.real = a.real / denom; + a.imag = -a.imag / denom; + b.real = -b.real; + } + switch ((int)b.real) { + case 0: + z.real = 1; + z.imag = 0; + return z; + case 1: + return a; + case 2: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(a, a); + case 3: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(z, a); + case 4: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(z, z); + } + } + if (a.imag == 0) { + if (a.real == 0) { + return a; + } else if (b.imag == 0) { + z.real = pow(a.real, b.real); + z.imag = 0; + return z; + } else if (a.real > 0) { + r = a.real; + theta = 0; + } else { + r = -a.real; + theta = atan2(0, -1); + } + } else { + r = __Pyx_c_abs_double(a); + theta = atan2(a.imag, a.real); + } + lnr = log(r); + z_r = exp(lnr * b.real - theta * b.imag); + z_theta = theta * b.real + lnr * b.imag; + z.real = z_r * cos(z_theta); + z.imag = z_r * sin(z_theta); + return z; + } + #endif +#endif + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + const int neg_one = (int) -1, const_zero = (int) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(int) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(int) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(int) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(int), + little, !is_unsigned); + } +} + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(enum NPY_TYPES) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(enum NPY_TYPES) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(enum NPY_TYPES) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(enum NPY_TYPES), + little, !is_unsigned); + } +} + +/* CIntFromPy */ + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + const int neg_one = (int) -1, const_zero = (int) 0; + const int is_unsigned = neg_one > const_zero; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_Check(x))) { + if (sizeof(int) < sizeof(long)) { + __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x)) + } else { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + goto raise_neg_overflow; + } + return (int) val; + } + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (int) 0; + case 1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0]) + case 2: + if (8 * sizeof(int) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) { + return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + case 3: + if (8 * sizeof(int) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) { + return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + case 4: + if (8 * sizeof(int) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) { + return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + } +#endif +#if CYTHON_COMPILING_IN_CPYTHON + if (unlikely(Py_SIZE(x) < 0)) { + goto raise_neg_overflow; + } +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (int) -1; + if (unlikely(result == 1)) + goto raise_neg_overflow; + } +#endif + if (sizeof(int) <= sizeof(unsigned long)) { + __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) +#endif + } + } else { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (int) 0; + case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0])) + case 1: __PYX_VERIFY_RETURN_INT(int, digit, +digits[0]) + case -2: + if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 2: + if (8 * sizeof(int) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case -3: + if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 3: + if (8 * sizeof(int) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case -4: + if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 4: + if (8 * sizeof(int) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { + return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + } +#endif + if (sizeof(int) <= sizeof(long)) { + __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x)) +#endif + } + } + { +#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) + PyErr_SetString(PyExc_RuntimeError, + "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); +#else + int val; + PyObject *v = __Pyx_PyNumber_IntOrLong(x); + #if PY_MAJOR_VERSION < 3 + if (likely(v) && !PyLong_Check(v)) { + PyObject *tmp = v; + v = PyNumber_Long(tmp); + Py_DECREF(tmp); + } + #endif + if (likely(v)) { + int one = 1; int is_little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&val; + int ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); + Py_DECREF(v); + if (likely(!ret)) + return val; + } +#endif + return (int) -1; + } + } else { + int val; + PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); + if (!tmp) return (int) -1; + val = __Pyx_PyInt_As_int(tmp); + Py_DECREF(tmp); + return val; + } +raise_overflow: + PyErr_SetString(PyExc_OverflowError, + "value too large to convert to int"); + return (int) -1; +raise_neg_overflow: + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to int"); + return (int) -1; +} + +/* CIntFromPy */ + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + const long neg_one = (long) -1, const_zero = (long) 0; + const int is_unsigned = neg_one > const_zero; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_Check(x))) { + if (sizeof(long) < sizeof(long)) { + __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x)) + } else { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + goto raise_neg_overflow; + } + return (long) val; + } + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (long) 0; + case 1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0]) + case 2: + if (8 * sizeof(long) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) { + return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + case 3: + if (8 * sizeof(long) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) { + return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + case 4: + if (8 * sizeof(long) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) { + return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + } +#endif +#if CYTHON_COMPILING_IN_CPYTHON + if (unlikely(Py_SIZE(x) < 0)) { + goto raise_neg_overflow; + } +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (long) -1; + if (unlikely(result == 1)) + goto raise_neg_overflow; + } +#endif + if (sizeof(long) <= sizeof(unsigned long)) { + __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) +#endif + } + } else { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (long) 0; + case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0])) + case 1: __PYX_VERIFY_RETURN_INT(long, digit, +digits[0]) + case -2: + if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 2: + if (8 * sizeof(long) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case -3: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 3: + if (8 * sizeof(long) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case -4: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 4: + if (8 * sizeof(long) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + } +#endif + if (sizeof(long) <= sizeof(long)) { + __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x)) +#endif + } + } + { +#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) + PyErr_SetString(PyExc_RuntimeError, + "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); +#else + long val; + PyObject *v = __Pyx_PyNumber_IntOrLong(x); + #if PY_MAJOR_VERSION < 3 + if (likely(v) && !PyLong_Check(v)) { + PyObject *tmp = v; + v = PyNumber_Long(tmp); + Py_DECREF(tmp); + } + #endif + if (likely(v)) { + int one = 1; int is_little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&val; + int ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); + Py_DECREF(v); + if (likely(!ret)) + return val; + } +#endif + return (long) -1; + } + } else { + long val; + PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); + if (!tmp) return (long) -1; + val = __Pyx_PyInt_As_long(tmp); + Py_DECREF(tmp); + return val; + } +raise_overflow: + PyErr_SetString(PyExc_OverflowError, + "value too large to convert to long"); + return (long) -1; +raise_neg_overflow: + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to long"); + return (long) -1; +} + +/* CheckBinaryVersion */ + static int __Pyx_check_binary_version(void) { + char ctversion[4], rtversion[4]; + PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); + PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); + if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) { + char message[200]; + PyOS_snprintf(message, sizeof(message), + "compiletime version %s of module '%.100s' " + "does not match runtime version %s", + ctversion, __Pyx_MODULE_NAME, rtversion); + return PyErr_WarnEx(NULL, message, 1); + } + return 0; +} + +/* ModuleImport */ + #ifndef __PYX_HAVE_RT_ImportModule +#define __PYX_HAVE_RT_ImportModule +static PyObject *__Pyx_ImportModule(const char *name) { + PyObject *py_name = 0; + PyObject *py_module = 0; + py_name = __Pyx_PyIdentifier_FromString(name); + if (!py_name) + goto bad; + py_module = PyImport_Import(py_name); + Py_DECREF(py_name); + return py_module; +bad: + Py_XDECREF(py_name); + return 0; +} +#endif + +/* TypeImport */ + #ifndef __PYX_HAVE_RT_ImportType +#define __PYX_HAVE_RT_ImportType +static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, + size_t size, int strict) +{ + PyObject *py_module = 0; + PyObject *result = 0; + PyObject *py_name = 0; + char warning[200]; + Py_ssize_t basicsize; +#ifdef Py_LIMITED_API + PyObject *py_basicsize; +#endif + py_module = __Pyx_ImportModule(module_name); + if (!py_module) + goto bad; + py_name = __Pyx_PyIdentifier_FromString(class_name); + if (!py_name) + goto bad; + result = PyObject_GetAttr(py_module, py_name); + Py_DECREF(py_name); + py_name = 0; + Py_DECREF(py_module); + py_module = 0; + if (!result) + goto bad; + if (!PyType_Check(result)) { + PyErr_Format(PyExc_TypeError, + "%.200s.%.200s is not a type object", + module_name, class_name); + goto bad; + } +#ifndef Py_LIMITED_API + basicsize = ((PyTypeObject *)result)->tp_basicsize; +#else + py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); + if (!py_basicsize) + goto bad; + basicsize = PyLong_AsSsize_t(py_basicsize); + Py_DECREF(py_basicsize); + py_basicsize = 0; + if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) + goto bad; +#endif + if (!strict && (size_t)basicsize > size) { + PyOS_snprintf(warning, sizeof(warning), + "%s.%s size changed, may indicate binary incompatibility. Expected %zd, got %zd", + module_name, class_name, basicsize, size); + if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; + } + else if ((size_t)basicsize != size) { + PyErr_Format(PyExc_ValueError, + "%.200s.%.200s has the wrong size, try recompiling. Expected %zd, got %zd", + module_name, class_name, basicsize, size); + goto bad; + } + return (PyTypeObject *)result; +bad: + Py_XDECREF(py_module); + Py_XDECREF(result); + return NULL; +} +#endif + +/* FunctionImport */ + #ifndef __PYX_HAVE_RT_ImportFunction +#define __PYX_HAVE_RT_ImportFunction +static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (**f)(void), const char *sig) { + PyObject *d = 0; + PyObject *cobj = 0; + union { + void (*fp)(void); + void *p; + } tmp; + d = PyObject_GetAttrString(module, (char *)"__pyx_capi__"); + if (!d) + goto bad; + cobj = PyDict_GetItemString(d, funcname); + if (!cobj) { + PyErr_Format(PyExc_ImportError, + "%.200s does not export expected C function %.200s", + PyModule_GetName(module), funcname); + goto bad; + } +#if PY_VERSION_HEX >= 0x02070000 + if (!PyCapsule_IsValid(cobj, sig)) { + PyErr_Format(PyExc_TypeError, + "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)", + PyModule_GetName(module), funcname, sig, PyCapsule_GetName(cobj)); + goto bad; + } + tmp.p = PyCapsule_GetPointer(cobj, sig); +#else + {const char *desc, *s1, *s2; + desc = (const char *)PyCObject_GetDesc(cobj); + if (!desc) + goto bad; + s1 = desc; s2 = sig; + while (*s1 != '\0' && *s1 == *s2) { s1++; s2++; } + if (*s1 != *s2) { + PyErr_Format(PyExc_TypeError, + "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)", + PyModule_GetName(module), funcname, sig, desc); + goto bad; + } + tmp.p = PyCObject_AsVoidPtr(cobj);} +#endif + *f = tmp.fp; + if (!(*f)) + goto bad; + Py_DECREF(d); + return 0; +bad: + Py_XDECREF(d); + return -1; +} +#endif + +/* InitStrings */ + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + while (t->p) { + #if PY_MAJOR_VERSION < 3 + if (t->is_unicode) { + *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); + } else if (t->intern) { + *t->p = PyString_InternFromString(t->s); + } else { + *t->p = PyString_FromStringAndSize(t->s, t->n - 1); + } + #else + if (t->is_unicode | t->is_str) { + if (t->intern) { + *t->p = PyUnicode_InternFromString(t->s); + } else if (t->encoding) { + *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); + } else { + *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); + } + } else { + *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); + } + #endif + if (!*t->p) + return -1; + ++t; + } + return 0; +} + +static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { + return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); +} +static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { + Py_ssize_t ignore; + return __Pyx_PyObject_AsStringAndSize(o, &ignore); +} +static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { +#if CYTHON_COMPILING_IN_CPYTHON && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) + if ( +#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + __Pyx_sys_getdefaultencoding_not_ascii && +#endif + PyUnicode_Check(o)) { +#if PY_VERSION_HEX < 0x03030000 + char* defenc_c; + PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); + if (!defenc) return NULL; + defenc_c = PyBytes_AS_STRING(defenc); +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + { + char* end = defenc_c + PyBytes_GET_SIZE(defenc); + char* c; + for (c = defenc_c; c < end; c++) { + if ((unsigned char) (*c) >= 128) { + PyUnicode_AsASCIIString(o); + return NULL; + } + } + } +#endif + *length = PyBytes_GET_SIZE(defenc); + return defenc_c; +#else + if (__Pyx_PyUnicode_READY(o) == -1) return NULL; +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + if (PyUnicode_IS_ASCII(o)) { + *length = PyUnicode_GET_LENGTH(o); + return PyUnicode_AsUTF8(o); + } else { + PyUnicode_AsASCIIString(o); + return NULL; + } +#else + return PyUnicode_AsUTF8AndSize(o, length); +#endif +#endif + } else +#endif +#if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE)) + if (PyByteArray_Check(o)) { + *length = PyByteArray_GET_SIZE(o); + return PyByteArray_AS_STRING(o); + } else +#endif + { + char* result; + int r = PyBytes_AsStringAndSize(o, &result, length); + if (unlikely(r < 0)) { + return NULL; + } else { + return result; + } + } +} +static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { + int is_true = x == Py_True; + if (is_true | (x == Py_False) | (x == Py_None)) return is_true; + else return PyObject_IsTrue(x); +} +static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) { +#if CYTHON_USE_TYPE_SLOTS + PyNumberMethods *m; +#endif + const char *name = NULL; + PyObject *res = NULL; +#if PY_MAJOR_VERSION < 3 + if (PyInt_Check(x) || PyLong_Check(x)) +#else + if (PyLong_Check(x)) +#endif + return __Pyx_NewRef(x); +#if CYTHON_USE_TYPE_SLOTS + m = Py_TYPE(x)->tp_as_number; + #if PY_MAJOR_VERSION < 3 + if (m && m->nb_int) { + name = "int"; + res = PyNumber_Int(x); + } + else if (m && m->nb_long) { + name = "long"; + res = PyNumber_Long(x); + } + #else + if (m && m->nb_int) { + name = "int"; + res = PyNumber_Long(x); + } + #endif +#else + res = PyNumber_Int(x); +#endif + if (res) { +#if PY_MAJOR_VERSION < 3 + if (!PyInt_Check(res) && !PyLong_Check(res)) { +#else + if (!PyLong_Check(res)) { +#endif + PyErr_Format(PyExc_TypeError, + "__%.4s__ returned non-%.4s (type %.200s)", + name, name, Py_TYPE(res)->tp_name); + Py_DECREF(res); + return NULL; + } + } + else if (!PyErr_Occurred()) { + PyErr_SetString(PyExc_TypeError, + "an integer is required"); + } + return res; +} +static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { + Py_ssize_t ival; + PyObject *x; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(b))) { + if (sizeof(Py_ssize_t) >= sizeof(long)) + return PyInt_AS_LONG(b); + else + return PyInt_AsSsize_t(x); + } +#endif + if (likely(PyLong_CheckExact(b))) { + #if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)b)->ob_digit; + const Py_ssize_t size = Py_SIZE(b); + if (likely(__Pyx_sst_abs(size) <= 1)) { + ival = likely(size) ? digits[0] : 0; + if (size == -1) ival = -ival; + return ival; + } else { + switch (size) { + case 2: + if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { + return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -2: + if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case 3: + if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { + return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -3: + if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case 4: + if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { + return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -4: + if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + } + } + #endif + return PyLong_AsSsize_t(b); + } + x = PyNumber_Index(b); + if (!x) return -1; + ival = PyInt_AsSsize_t(x); + Py_DECREF(x); + return ival; +} +static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { + return PyInt_FromSize_t(ival); +} + + +#endif /* Py_PYTHON_H */ diff --git a/test/test_models.py b/test/test_models.pyx similarity index 72% rename from test/test_models.py rename to test/test_models.pyx index 1ae9c23..8e83a33 100644 --- a/test/test_models.py +++ b/test/test_models.pyx @@ -3,29 +3,31 @@ """ import numpy as np +cimport numpy as np from test.shared import read_data from ccd import models - +from ccd.models.lasso cimport coefficient_matrix def test_lasso_coefficient_matrix(): sample = 'test/resources/sample_WA_grid08_row999_col1_normal.csv' avg_days_yr = 365.25 num_coefficients = (4, 6, 8) - dates = read_data(sample)[0] + #dates = read_data(sample)[0] + dates = np.asarray(read_data(sample)[0], dtype=np.long) for coefs in num_coefficients: - matrix = models.lasso.coefficient_matrix(dates, avg_days_yr, coefs) + matrix = coefficient_matrix(dates, avg_days_yr, coefs) col_idx = coefs - 1 used_cols = matrix[:, :col_idx] unused_cols = matrix[:, col_idx:] - print(matrix.shape) - print(used_cols.shape) - print(unused_cols.shape) - print(len(dates)) + #print(matrix.shape) + #print(used_cols.shape) + #print(unused_cols.shape) + #print(len(dates)) # Ensure that we are covering the entire matrix array. assert used_cols.shape[1] + unused_cols.shape[1] == matrix.shape[1] diff --git a/test/test_models_wrapper.py b/test/test_models_wrapper.py new file mode 100644 index 0000000..1a697f6 --- /dev/null +++ b/test/test_models_wrapper.py @@ -0,0 +1,3 @@ +from test.test_models import test_lasso_coefficient_matrix + +test_lasso_coefficient_matrix() diff --git a/test/test_qa.py b/test/test_qa.py index 188d827..3b46271 100644 --- a/test/test_qa.py +++ b/test/test_qa.py @@ -11,16 +11,16 @@ clear_thresh = 0.25 snow_thresh = 0.75 - -def test_checkbit(): - packint = 1 - offset = 0 - - assert checkbit(packint, offset) - - offset = 1 - - assert not checkbit(packint, offset) +# TODO test for unpackqa, where checkbit resides +#def test_checkbit(): +# packint = 1 +# offset = 0 +# +# assert checkbit(packint, offset) +# +# offset = 1 +# +# assert not checkbit(packint, offset) # def test_qabitval(): From 3d709dbb8f37754278081de19e69c797921043e4 Mon Sep 17 00:00:00 2001 From: clay austin Date: Thu, 24 Aug 2017 10:44:50 -0500 Subject: [PATCH 34/45] fix lasso coefficient test --- test/test_models.c | 1730 ++++++++--------------------------- test/test_models.pyx | 32 +- test/test_models_wrapper.py | 39 +- 3 files changed, 413 insertions(+), 1388 deletions(-) diff --git a/test/test_models.c b/test/test_models.c index da6343c..f36ef1f 100644 --- a/test/test_models.c +++ b/test/test_models.c @@ -1034,6 +1034,21 @@ typedef PyBoolObject *__pyx_t_3ccd_6models_5lasso_BTYPE_t; #define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0) #define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0) +/* RaiseArgTupleInvalid.proto */ +static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, + Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); + +/* RaiseDoubleKeywords.proto */ +static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); + +/* ParseKeywords.proto */ +static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ + PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\ + const char* function_name); + +/* ExtTypeTest.proto */ +static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); + /* PyObjectGetAttrStr.proto */ #if CYTHON_USE_TYPE_SLOTS static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { @@ -1053,27 +1068,6 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject /* GetBuiltinName.proto */ static PyObject *__Pyx_GetBuiltinName(PyObject *name); -/* GetModuleGlobalName.proto */ -static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name); - -/* PyCFunctionFastCall.proto */ -#if CYTHON_FAST_PYCCALL -static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs); -#else -#define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL) -#endif - -/* PyFunctionFastCall.proto */ -#if CYTHON_FAST_PYCALL -#define __Pyx_PyFunction_FastCall(func, args, nargs)\ - __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL) -#if 1 || PY_VERSION_HEX < 0x030600B1 -static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs); -#else -#define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs) -#endif -#endif - /* PyObjectCall.proto */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw); @@ -1081,55 +1075,6 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) #endif -/* PyObjectCallMethO.proto */ -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); -#endif - -/* PyObjectCallOneArg.proto */ -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); - -/* GetItemInt.proto */ -#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ - __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\ - (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\ - __Pyx_GetItemInt_Generic(o, to_py_func(i)))) -#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ - __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ - (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck); -#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ - __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ - (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck); -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, - int is_list, int wraparound, int boundscheck); - -/* ExtTypeTest.proto */ -static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); - -/* PyIntBinop.proto */ -#if !CYTHON_COMPILING_IN_PYPY -static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace); -#else -#define __Pyx_PyInt_SubtractObjC(op1, op2, intval, inplace)\ - (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2)) -#endif - -/* PyIntBinop.proto */ -#if !CYTHON_COMPILING_IN_PYPY -static PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, long intval, int inplace); -#else -#define __Pyx_PyInt_EqObjC(op1, op2, intval, inplace)\ - PyObject_RichCompare(op1, op2, Py_EQ) - #endif - /* PyThreadStateGet.proto */ #if CYTHON_FAST_THREAD_STATE #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate; @@ -1239,12 +1184,6 @@ static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename); -/* CIntToPy.proto */ -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); - -/* CIntToPy.proto */ -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value); - /* RealImag.proto */ #if CYTHON_CCOMPLEX #ifdef __cplusplus @@ -1352,6 +1291,9 @@ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES v /* CIntFromPy.proto */ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); + /* CIntFromPy.proto */ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); @@ -1488,40 +1430,27 @@ static PyObject *__pyx_builtin_range; static PyObject *__pyx_builtin_RuntimeError; static PyObject *__pyx_builtin_ImportError; static const char __pyx_k_np[] = "np"; +static const char __pyx_k_ady[] = "ady"; static const char __pyx_k_ccd[] = "ccd"; -static const char __pyx_k_long[] = "long"; static const char __pyx_k_main[] = "__main__"; -static const char __pyx_k_size[] = "size"; static const char __pyx_k_test[] = "__test__"; static const char __pyx_k_coefs[] = "coefs"; static const char __pyx_k_dates[] = "dates"; -static const char __pyx_k_dtype[] = "dtype"; static const char __pyx_k_numpy[] = "numpy"; static const char __pyx_k_range[] = "range"; -static const char __pyx_k_shape[] = "shape"; -static const char __pyx_k_where[] = "where"; static const char __pyx_k_import[] = "__import__"; -static const char __pyx_k_matrix[] = "matrix"; static const char __pyx_k_models[] = "models"; -static const char __pyx_k_sample[] = "sample"; -static const char __pyx_k_asarray[] = "asarray"; -static const char __pyx_k_col_idx[] = "col_idx"; static const char __pyx_k_read_data[] = "read_data"; -static const char __pyx_k_used_cols[] = "used_cols"; static const char __pyx_k_ValueError[] = "ValueError"; static const char __pyx_k_ImportError[] = "ImportError"; -static const char __pyx_k_avg_days_yr[] = "avg_days_yr"; static const char __pyx_k_test_shared[] = "test.shared"; -static const char __pyx_k_unused_cols[] = "unused_cols"; static const char __pyx_k_RuntimeError[] = "RuntimeError"; -static const char __pyx_k_num_coefficients[] = "num_coefficients"; static const char __pyx_k_test_test_models[] = "test.test_models"; +static const char __pyx_k_coefficient_matrix_wrap[] = "coefficient_matrix_wrap"; static const char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; -static const char __pyx_k_test_lasso_coefficient_matrix[] = "test_lasso_coefficient_matrix"; -static const char __pyx_k_Tests_for_any_methods_that_resi[] = "\nTests for any methods that reside in the ccd.models sub-module.\n"; +static const char __pyx_k_Cythonized_module_for_pulling_i[] = "\nCythonized module for pulling in any cdef'd functions\n"; static const char __pyx_k_home_caustin_workspace_lcmap_py[] = "/home/caustin/workspace/lcmap-pyccd/test/test_models.pyx"; static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import"; -static const char __pyx_k_test_resources_sample_WA_grid08[] = "test/resources/sample_WA_grid08_row999_col1_normal.csv"; static const char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; static const char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd"; static const char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported"; @@ -1534,51 +1463,33 @@ static PyObject *__pyx_n_s_ImportError; static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor; static PyObject *__pyx_n_s_RuntimeError; static PyObject *__pyx_n_s_ValueError; -static PyObject *__pyx_n_s_asarray; -static PyObject *__pyx_n_s_avg_days_yr; +static PyObject *__pyx_n_s_ady; static PyObject *__pyx_n_s_ccd; +static PyObject *__pyx_n_s_coefficient_matrix_wrap; static PyObject *__pyx_n_s_coefs; -static PyObject *__pyx_n_s_col_idx; static PyObject *__pyx_n_s_dates; -static PyObject *__pyx_n_s_dtype; static PyObject *__pyx_kp_s_home_caustin_workspace_lcmap_py; static PyObject *__pyx_n_s_import; -static PyObject *__pyx_n_s_long; static PyObject *__pyx_n_s_main; -static PyObject *__pyx_n_s_matrix; static PyObject *__pyx_n_s_models; static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou; static PyObject *__pyx_n_s_np; -static PyObject *__pyx_n_s_num_coefficients; static PyObject *__pyx_n_s_numpy; static PyObject *__pyx_kp_s_numpy_core_multiarray_failed_to; static PyObject *__pyx_kp_s_numpy_core_umath_failed_to_impor; static PyObject *__pyx_n_s_range; static PyObject *__pyx_n_s_read_data; -static PyObject *__pyx_n_s_sample; -static PyObject *__pyx_n_s_shape; -static PyObject *__pyx_n_s_size; static PyObject *__pyx_n_s_test; -static PyObject *__pyx_n_s_test_lasso_coefficient_matrix; -static PyObject *__pyx_kp_s_test_resources_sample_WA_grid08; static PyObject *__pyx_n_s_test_shared; static PyObject *__pyx_n_s_test_test_models; static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd; -static PyObject *__pyx_n_s_unused_cols; -static PyObject *__pyx_n_s_used_cols; -static PyObject *__pyx_n_s_where; -static PyObject *__pyx_pf_4test_11test_models_test_lasso_coefficient_matrix(CYTHON_UNUSED PyObject *__pyx_self); /* proto */ +static PyObject *__pyx_pf_4test_11test_models_coefficient_matrix_wrap(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_dates, PyObject *__pyx_v_ady, PyObject *__pyx_v_coefs); /* proto */ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ -static PyObject *__pyx_int_0; -static PyObject *__pyx_int_1; -static PyObject *__pyx_int_4; -static PyObject *__pyx_int_6; -static PyObject *__pyx_int_8; static PyObject *__pyx_tuple_; -static PyObject *__pyx_slice__2; -static PyObject *__pyx_slice__3; +static PyObject *__pyx_tuple__2; +static PyObject *__pyx_tuple__3; static PyObject *__pyx_tuple__4; static PyObject *__pyx_tuple__5; static PyObject *__pyx_tuple__6; @@ -1586,570 +1497,119 @@ static PyObject *__pyx_tuple__7; static PyObject *__pyx_tuple__8; static PyObject *__pyx_tuple__9; static PyObject *__pyx_tuple__10; -static PyObject *__pyx_tuple__11; -static PyObject *__pyx_tuple__12; -static PyObject *__pyx_tuple__13; -static PyObject *__pyx_codeobj__14; +static PyObject *__pyx_codeobj__11; -/* "test/test_models.pyx":13 - * from ccd.models.lasso cimport coefficient_matrix +/* "test/test_models.pyx":14 + * * - * def test_lasso_coefficient_matrix(): # <<<<<<<<<<<<<< - * sample = 'test/resources/sample_WA_grid08_row999_col1_normal.csv' - * avg_days_yr = 365.25 + * def coefficient_matrix_wrap(dates, ady, coefs): # <<<<<<<<<<<<<< + * return coefficient_matrix(dates, ady, coefs) */ /* Python wrapper */ -static PyObject *__pyx_pw_4test_11test_models_1test_lasso_coefficient_matrix(PyObject *__pyx_self, CYTHON_UNUSED PyObject *unused); /*proto*/ -static PyMethodDef __pyx_mdef_4test_11test_models_1test_lasso_coefficient_matrix = {"test_lasso_coefficient_matrix", (PyCFunction)__pyx_pw_4test_11test_models_1test_lasso_coefficient_matrix, METH_NOARGS, 0}; -static PyObject *__pyx_pw_4test_11test_models_1test_lasso_coefficient_matrix(PyObject *__pyx_self, CYTHON_UNUSED PyObject *unused) { +static PyObject *__pyx_pw_4test_11test_models_1coefficient_matrix_wrap(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ +static PyMethodDef __pyx_mdef_4test_11test_models_1coefficient_matrix_wrap = {"coefficient_matrix_wrap", (PyCFunction)__pyx_pw_4test_11test_models_1coefficient_matrix_wrap, METH_VARARGS|METH_KEYWORDS, 0}; +static PyObject *__pyx_pw_4test_11test_models_1coefficient_matrix_wrap(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { + PyObject *__pyx_v_dates = 0; + PyObject *__pyx_v_ady = 0; + PyObject *__pyx_v_coefs = 0; PyObject *__pyx_r = 0; __Pyx_RefNannyDeclarations - __Pyx_RefNannySetupContext("test_lasso_coefficient_matrix (wrapper)", 0); 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return 0; __pyx_L1_error:; @@ -4898,11 +4311,6 @@ static int __Pyx_InitCachedConstants(void) { static int __Pyx_InitGlobals(void) { if (__Pyx_InitStrings(__pyx_string_tab) < 0) __PYX_ERR(0, 1, __pyx_L1_error); - __pyx_int_0 = PyInt_FromLong(0); if (unlikely(!__pyx_int_0)) __PYX_ERR(0, 1, __pyx_L1_error) - __pyx_int_1 = PyInt_FromLong(1); if (unlikely(!__pyx_int_1)) __PYX_ERR(0, 1, __pyx_L1_error) - __pyx_int_4 = PyInt_FromLong(4); if (unlikely(!__pyx_int_4)) __PYX_ERR(0, 1, __pyx_L1_error) - __pyx_int_6 = PyInt_FromLong(6); if (unlikely(!__pyx_int_6)) __PYX_ERR(0, 1, __pyx_L1_error) - __pyx_int_8 = PyInt_FromLong(8); if (unlikely(!__pyx_int_8)) __PYX_ERR(0, 1, __pyx_L1_error) return 0; __pyx_L1_error:; return -1; @@ -4958,7 +4366,7 @@ PyMODINIT_FUNC PyInit_test_models(void) #endif /*--- Module creation code ---*/ #if PY_MAJOR_VERSION < 3 - __pyx_m = Py_InitModule4("test_models", __pyx_methods, __pyx_k_Tests_for_any_methods_that_resi, 0, PYTHON_API_VERSION); Py_XINCREF(__pyx_m); + __pyx_m = Py_InitModule4("test_models", __pyx_methods, __pyx_k_Cythonized_module_for_pulling_i, 0, PYTHON_API_VERSION); Py_XINCREF(__pyx_m); #else __pyx_m = PyModule_Create(&__pyx_moduledef); #endif @@ -5073,21 +4481,20 @@ PyMODINIT_FUNC PyInit_test_models(void) __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; - /* "test/test_models.pyx":13 - * from ccd.models.lasso cimport coefficient_matrix + /* "test/test_models.pyx":14 * - * def test_lasso_coefficient_matrix(): # <<<<<<<<<<<<<< - * sample = 'test/resources/sample_WA_grid08_row999_col1_normal.csv' - * avg_days_yr = 365.25 + * + * def coefficient_matrix_wrap(dates, ady, coefs): # <<<<<<<<<<<<<< + * return coefficient_matrix(dates, ady, coefs) */ - __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_4test_11test_models_1test_lasso_coefficient_matrix, NULL, __pyx_n_s_test_test_models); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 13, __pyx_L1_error) + __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_4test_11test_models_1coefficient_matrix_wrap, NULL, __pyx_n_s_test_test_models); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 14, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_2); - if (PyDict_SetItem(__pyx_d, __pyx_n_s_test_lasso_coefficient_matrix, __pyx_t_2) < 0) __PYX_ERR(0, 13, __pyx_L1_error) + if (PyDict_SetItem(__pyx_d, __pyx_n_s_coefficient_matrix_wrap, __pyx_t_2) < 0) __PYX_ERR(0, 14, __pyx_L1_error) __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; /* "test/test_models.pyx":1 * """ # <<<<<<<<<<<<<< - * Tests for any methods that reside in the ccd.models sub-module. + * Cythonized module for pulling in any cdef'd functions * """ */ __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1, __pyx_L1_error) @@ -5145,178 +4552,177 @@ static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) { } #endif -/* GetBuiltinName */ -static PyObject *__Pyx_GetBuiltinName(PyObject *name) { - PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name); - if (unlikely(!result)) { - PyErr_Format(PyExc_NameError, -#if PY_MAJOR_VERSION >= 3 - "name '%U' is not defined", name); -#else - "name '%.200s' is not defined", PyString_AS_STRING(name)); -#endif - } - return result; -} - -/* GetModuleGlobalName */ -static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { - PyObject *result; -#if !CYTHON_AVOID_BORROWED_REFS - result = PyDict_GetItem(__pyx_d, name); - if (likely(result)) { - Py_INCREF(result); +/* RaiseArgTupleInvalid */ +static void __Pyx_RaiseArgtupleInvalid( + const char* func_name, + int exact, + Py_ssize_t num_min, + Py_ssize_t num_max, + Py_ssize_t num_found) +{ + Py_ssize_t num_expected; + const char *more_or_less; + if (num_found < num_min) { + num_expected = num_min; + more_or_less = "at least"; } else { -#else - result = PyObject_GetItem(__pyx_d, name); - if (!result) { - PyErr_Clear(); -#endif - result = __Pyx_GetBuiltinName(name); + num_expected = num_max; + more_or_less = "at most"; } - return result; + if (exact) { + more_or_less = "exactly"; + } + PyErr_Format(PyExc_TypeError, + "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", + func_name, more_or_less, num_expected, + (num_expected == 1) ? "" : "s", num_found); } -/* PyCFunctionFastCall */ - #if CYTHON_FAST_PYCCALL -static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, PyObject **args, Py_ssize_t nargs) { - PyCFunctionObject *func = (PyCFunctionObject*)func_obj; - PyCFunction meth = PyCFunction_GET_FUNCTION(func); - PyObject *self = PyCFunction_GET_SELF(func); - assert(PyCFunction_Check(func)); - assert(METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST))); - assert(nargs >= 0); - assert(nargs == 0 || args != NULL); - /* _PyCFunction_FastCallDict() must not be called with an exception set, - because it may clear it (directly or indirectly) and so the - caller loses its exception */ - assert(!PyErr_Occurred()); - return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL); +/* RaiseDoubleKeywords */ +static void __Pyx_RaiseDoubleKeywordsError( + const char* func_name, + PyObject* kw_name) +{ + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION >= 3 + "%s() got multiple values for keyword argument '%U'", func_name, kw_name); + #else + "%s() got multiple values for keyword argument '%s'", func_name, + PyString_AsString(kw_name)); + #endif } -#endif // CYTHON_FAST_PYCCALL -/* PyFunctionFastCall */ - #if CYTHON_FAST_PYCALL -#include "frameobject.h" -static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na, - PyObject *globals) { - PyFrameObject *f; - PyThreadState *tstate = PyThreadState_GET(); - PyObject **fastlocals; - Py_ssize_t i; - PyObject *result; - assert(globals != NULL); - /* XXX Perhaps we should create a specialized - PyFrame_New() that doesn't take locals, but does - take builtins without sanity checking them. - */ - assert(tstate != NULL); - f = PyFrame_New(tstate, co, globals, NULL); - if (f == NULL) { - return NULL; - } - fastlocals = f->f_localsplus; - for (i = 0; i < na; i++) { - Py_INCREF(*args); - fastlocals[i] = *args++; - } - result = PyEval_EvalFrameEx(f,0); - ++tstate->recursion_depth; - Py_DECREF(f); - --tstate->recursion_depth; - return result; -} -#if 1 || PY_VERSION_HEX < 0x030600B1 -static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs) { - PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func); - PyObject *globals = PyFunction_GET_GLOBALS(func); - PyObject *argdefs = PyFunction_GET_DEFAULTS(func); - PyObject *closure; -#if PY_MAJOR_VERSION >= 3 - PyObject *kwdefs; -#endif - PyObject *kwtuple, **k; - PyObject **d; - Py_ssize_t nd; - Py_ssize_t nk; - PyObject *result; - assert(kwargs == NULL || PyDict_Check(kwargs)); - nk = kwargs ? PyDict_Size(kwargs) : 0; - if (Py_EnterRecursiveCall((char*)" while calling a Python object")) { - return NULL; - } - if ( -#if PY_MAJOR_VERSION >= 3 - co->co_kwonlyargcount == 0 && -#endif - likely(kwargs == NULL || nk == 0) && - co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) { - if (argdefs == NULL && co->co_argcount == nargs) { - result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals); - goto done; - } - else if (nargs == 0 && argdefs != NULL - && co->co_argcount == Py_SIZE(argdefs)) { - /* function called with no arguments, but all parameters have - a default value: use default values as arguments .*/ - args = &PyTuple_GET_ITEM(argdefs, 0); - result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals); - goto done; - } - } - if (kwargs != NULL) { - Py_ssize_t pos, i; - kwtuple = PyTuple_New(2 * nk); - if (kwtuple == NULL) { - result = NULL; - goto done; +/* ParseKeywords */ +static int __Pyx_ParseOptionalKeywords( + PyObject *kwds, + PyObject **argnames[], + PyObject *kwds2, + PyObject *values[], + Py_ssize_t num_pos_args, + const char* function_name) +{ + PyObject *key = 0, *value = 0; + Py_ssize_t pos = 0; + PyObject*** name; + PyObject*** first_kw_arg = argnames + num_pos_args; + while (PyDict_Next(kwds, &pos, &key, &value)) { + name = first_kw_arg; + while (*name && (**name != key)) name++; + if (*name) { + values[name-argnames] = value; + continue; } - k = &PyTuple_GET_ITEM(kwtuple, 0); - pos = i = 0; - while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) { - Py_INCREF(k[i]); - Py_INCREF(k[i+1]); - i += 2; + name = first_kw_arg; + #if PY_MAJOR_VERSION < 3 + if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) { + while (*name) { + if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) + && _PyString_Eq(**name, key)) { + values[name-argnames] = value; + break; + } + name++; + } + if (*name) continue; + else { + PyObject*** argname = argnames; + while (argname != first_kw_arg) { + if ((**argname == key) || ( + (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) + && _PyString_Eq(**argname, key))) { + goto arg_passed_twice; + } + argname++; + } + } + } else + #endif + if (likely(PyUnicode_Check(key))) { + while (*name) { + int cmp = (**name == key) ? 0 : + #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 + (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : + #endif + PyUnicode_Compare(**name, key); + if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; + if (cmp == 0) { + values[name-argnames] = value; + break; + } + name++; + } + if (*name) continue; + else { + PyObject*** argname = argnames; + while (argname != first_kw_arg) { + int cmp = (**argname == key) ? 0 : + #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 + (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : + #endif + PyUnicode_Compare(**argname, key); + if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; + if (cmp == 0) goto arg_passed_twice; + argname++; + } + } + } else + goto invalid_keyword_type; + if (kwds2) { + if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; + } else { + goto invalid_keyword; } - nk = i / 2; - } - else { - kwtuple = NULL; - k = NULL; - } - closure = PyFunction_GET_CLOSURE(func); -#if PY_MAJOR_VERSION >= 3 - kwdefs = PyFunction_GET_KW_DEFAULTS(func); -#endif - if (argdefs != NULL) { - d = &PyTuple_GET_ITEM(argdefs, 0); - nd = Py_SIZE(argdefs); } - else { - d = NULL; - nd = 0; + return 0; +arg_passed_twice: + __Pyx_RaiseDoubleKeywordsError(function_name, key); + goto bad; +invalid_keyword_type: + PyErr_Format(PyExc_TypeError, + "%.200s() keywords must be strings", function_name); + goto bad; +invalid_keyword: + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION < 3 + "%.200s() got an unexpected keyword argument '%.200s'", + function_name, PyString_AsString(key)); + #else + "%s() got an unexpected keyword argument '%U'", + function_name, key); + #endif +bad: + return -1; +} + +/* ExtTypeTest */ +static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; } + if (likely(PyObject_TypeCheck(obj, type))) + return 1; + PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", + Py_TYPE(obj)->tp_name, type->tp_name); + return 0; +} + +/* GetBuiltinName */ +static PyObject *__Pyx_GetBuiltinName(PyObject *name) { + PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name); + if (unlikely(!result)) { + PyErr_Format(PyExc_NameError, #if PY_MAJOR_VERSION >= 3 - result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL, - args, nargs, - k, (int)nk, - d, (int)nd, kwdefs, closure); + "name '%U' is not defined", name); #else - result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL, - args, nargs, - k, (int)nk, - d, (int)nd, closure); + "name '%.200s' is not defined", PyString_AS_STRING(name)); #endif - Py_XDECREF(kwtuple); -done: - Py_LeaveRecursiveCall(); + } return result; } -#endif // CPython < 3.6 -#endif // CYTHON_FAST_PYCALL /* PyObjectCall */ - #if CYTHON_COMPILING_IN_CPYTHON +#if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { PyObject *result; ternaryfunc call = func->ob_type->tp_call; @@ -5335,367 +4741,8 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg } #endif -/* PyObjectCallMethO */ - #if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { - PyObject *self, *result; - PyCFunction cfunc; - cfunc = PyCFunction_GET_FUNCTION(func); - self = PyCFunction_GET_SELF(func); - if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) - return NULL; - result = cfunc(self, arg); - Py_LeaveRecursiveCall(); - if (unlikely(!result) && unlikely(!PyErr_Occurred())) { - PyErr_SetString( - PyExc_SystemError, - "NULL result without error in PyObject_Call"); - } - return result; -} -#endif - -/* PyObjectCallOneArg */ - #if CYTHON_COMPILING_IN_CPYTHON -static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) { - PyObject *result; - PyObject *args = PyTuple_New(1); - if (unlikely(!args)) return NULL; - Py_INCREF(arg); - PyTuple_SET_ITEM(args, 0, arg); - result = __Pyx_PyObject_Call(func, args, NULL); - Py_DECREF(args); - return result; -} -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { -#if CYTHON_FAST_PYCALL - if (PyFunction_Check(func)) { - return __Pyx_PyFunction_FastCall(func, &arg, 1); - } -#endif -#ifdef __Pyx_CyFunction_USED - if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { -#else - if (likely(PyCFunction_Check(func))) { -#endif - if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { - return __Pyx_PyObject_CallMethO(func, arg); -#if CYTHON_FAST_PYCCALL - } else if (PyCFunction_GET_FLAGS(func) & METH_FASTCALL) { - return __Pyx_PyCFunction_FastCall(func, &arg, 1); -#endif - } - } - return __Pyx__PyObject_CallOneArg(func, arg); -} -#else -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { - PyObject *result; - PyObject *args = PyTuple_Pack(1, arg); - if (unlikely(!args)) return NULL; - result = __Pyx_PyObject_Call(func, args, NULL); - Py_DECREF(args); - return result; -} -#endif - -/* GetItemInt */ - static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { - PyObject *r; - if (!j) return NULL; - r = PyObject_GetItem(o, j); - Py_DECREF(j); - return r; -} -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, - CYTHON_NCP_UNUSED int wraparound, - CYTHON_NCP_UNUSED int boundscheck) { -#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS - if (wraparound & unlikely(i < 0)) i += PyList_GET_SIZE(o); - if ((!boundscheck) || likely((0 <= i) & (i < PyList_GET_SIZE(o)))) { - PyObject *r = PyList_GET_ITEM(o, i); - Py_INCREF(r); - return r; - } - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); -#else - return PySequence_GetItem(o, i); -#endif -} -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, - CYTHON_NCP_UNUSED int wraparound, - CYTHON_NCP_UNUSED int boundscheck) { -#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS - if (wraparound & unlikely(i < 0)) i += PyTuple_GET_SIZE(o); - if ((!boundscheck) || likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) { - PyObject *r = PyTuple_GET_ITEM(o, i); - Py_INCREF(r); - return r; - } - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); -#else - return PySequence_GetItem(o, i); -#endif -} -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, - CYTHON_NCP_UNUSED int wraparound, - CYTHON_NCP_UNUSED int boundscheck) { -#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS - if (is_list || PyList_CheckExact(o)) { - Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); - if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) { - PyObject *r = PyList_GET_ITEM(o, n); - Py_INCREF(r); - return r; - } - } - else if (PyTuple_CheckExact(o)) { - Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); - if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) { - PyObject *r = PyTuple_GET_ITEM(o, n); - Py_INCREF(r); - return r; - } - } else { - PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; - if (likely(m && m->sq_item)) { - if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { - Py_ssize_t l = m->sq_length(o); - if (likely(l >= 0)) { - i += l; - } else { - if (!PyErr_ExceptionMatches(PyExc_OverflowError)) - return NULL; - PyErr_Clear(); - } - } - return m->sq_item(o, i); - } - } -#else - if (is_list || PySequence_Check(o)) { - return PySequence_GetItem(o, i); - } -#endif - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); -} - -/* ExtTypeTest */ - static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { - if (unlikely(!type)) { - PyErr_SetString(PyExc_SystemError, "Missing type object"); - return 0; - } - if (likely(PyObject_TypeCheck(obj, type))) - return 1; - PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", - Py_TYPE(obj)->tp_name, type->tp_name); - return 0; -} - -/* PyIntBinop */ - #if !CYTHON_COMPILING_IN_PYPY -static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { - #if PY_MAJOR_VERSION < 3 - if (likely(PyInt_CheckExact(op1))) { - const long b = intval; - long x; - long a = PyInt_AS_LONG(op1); - x = (long)((unsigned long)a - b); - if (likely((x^a) >= 0 || (x^~b) >= 0)) - return PyInt_FromLong(x); - return PyLong_Type.tp_as_number->nb_subtract(op1, op2); - } - #endif - #if CYTHON_USE_PYLONG_INTERNALS - if (likely(PyLong_CheckExact(op1))) { - const long b = intval; - long a, x; -#ifdef HAVE_LONG_LONG - const PY_LONG_LONG llb = intval; - PY_LONG_LONG lla, llx; -#endif - const digit* digits = ((PyLongObject*)op1)->ob_digit; - const Py_ssize_t size = Py_SIZE(op1); - if (likely(__Pyx_sst_abs(size) <= 1)) { - a = likely(size) ? digits[0] : 0; - if (size == -1) a = -a; - } else { - switch (size) { - case -2: - if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { - a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); - break; -#ifdef HAVE_LONG_LONG - } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { - lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); - goto long_long; -#endif - } - case 2: - if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { - a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); - break; -#ifdef HAVE_LONG_LONG - } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { - lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); - goto long_long; -#endif - } - case -3: - if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { - a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); - break; -#ifdef HAVE_LONG_LONG - } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { - lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); - goto long_long; -#endif - } - case 3: - if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { - a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); - break; -#ifdef HAVE_LONG_LONG - } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { - lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); - goto long_long; -#endif - } - case -4: - if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { - a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); - break; -#ifdef HAVE_LONG_LONG - } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { - lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); - goto long_long; -#endif - } - case 4: - if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { - a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); - break; -#ifdef HAVE_LONG_LONG - } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { - lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); - goto long_long; -#endif - } - default: return PyLong_Type.tp_as_number->nb_subtract(op1, op2); - } - } - x = a - b; - return PyLong_FromLong(x); -#ifdef HAVE_LONG_LONG - long_long: - llx = lla - llb; - return PyLong_FromLongLong(llx); -#endif - - - } - #endif - if (PyFloat_CheckExact(op1)) { - const long b = intval; - double a = PyFloat_AS_DOUBLE(op1); - double result; - PyFPE_START_PROTECT("subtract", return NULL) - result = ((double)a) - (double)b; - PyFPE_END_PROTECT(result) - return PyFloat_FromDouble(result); - } - return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2); -} -#endif - -/* PyIntBinop */ - #if !CYTHON_COMPILING_IN_PYPY -static PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { - if (op1 == op2) { - Py_RETURN_TRUE; - } - #if PY_MAJOR_VERSION < 3 - if (likely(PyInt_CheckExact(op1))) { - const long b = intval; - long a = PyInt_AS_LONG(op1); - if (a == b) { - Py_RETURN_TRUE; - } else { - Py_RETURN_FALSE; - } - } - #endif - #if CYTHON_USE_PYLONG_INTERNALS - if (likely(PyLong_CheckExact(op1))) { - const long b = intval; - long a; - const digit* digits = ((PyLongObject*)op1)->ob_digit; - const Py_ssize_t size = Py_SIZE(op1); - if (likely(__Pyx_sst_abs(size) <= 1)) { - a = likely(size) ? digits[0] : 0; - if (size == -1) a = -a; - } else { - switch (size) { - case -2: - if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { - a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); - break; - } - case 2: - if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { - a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); - break; - } - case -3: - if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { - a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); - break; - } - case 3: - if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { - a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); - break; - } - case -4: - if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { - a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); - break; - } - case 4: - if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { - a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); - break; - } - #if PyLong_SHIFT < 30 && PyLong_SHIFT != 15 - default: return PyLong_Type.tp_richcompare(op1, op2, Py_EQ); - #else - default: Py_RETURN_FALSE; - #endif - } - } - if (a == b) { - Py_RETURN_TRUE; - } else { - Py_RETURN_FALSE; - } - } - #endif - if (PyFloat_CheckExact(op1)) { - const long b = intval; - double a = PyFloat_AS_DOUBLE(op1); - if ((double)a == (double)b) { - Py_RETURN_TRUE; - } else { - Py_RETURN_FALSE; - } - } - return PyObject_RichCompare(op1, op2, Py_EQ); -} -#endif - /* PyErrFetchRestore */ - #if CYTHON_FAST_THREAD_STATE +#if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; tmp_type = tstate->curexc_type; @@ -5719,7 +4766,7 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject #endif /* RaiseException */ - #if PY_MAJOR_VERSION < 3 +#if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { __Pyx_PyThreadState_declare @@ -5882,25 +4929,25 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject #endif /* RaiseTooManyValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { + static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } /* RaiseNeedMoreValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { + static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } /* RaiseNoneIterError */ - static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { + static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } /* SaveResetException */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { *type = tstate->exc_type; *value = tstate->exc_value; @@ -5924,7 +4971,7 @@ static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject #endif /* PyErrExceptionMatches */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) { PyObject *exc_type = tstate->curexc_type; if (exc_type == err) return 1; @@ -5934,7 +4981,7 @@ static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tsta #endif /* GetException */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { #else static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { @@ -5995,7 +5042,7 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) } /* Import */ - static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { + static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { PyObject *empty_list = 0; PyObject *module = 0; PyObject *global_dict = 0; @@ -6069,7 +5116,7 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) } /* ImportFrom */ - static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { + static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { PyErr_Format(PyExc_ImportError, @@ -6083,7 +5130,7 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) } /* CodeObjectCache */ - static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; @@ -6163,7 +5210,7 @@ static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { } /* AddTraceback */ - #include "compile.h" + #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( @@ -6243,39 +5290,8 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, Py_XDECREF(py_frame); } -/* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { - const long neg_one = (long) -1, const_zero = (long) 0; - const int is_unsigned = neg_one > const_zero; - if (is_unsigned) { - if (sizeof(long) < sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(long) <= sizeof(unsigned long)) { - return PyLong_FromUnsignedLong((unsigned long) value); -#ifdef HAVE_LONG_LONG - } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { - return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); -#endif - } - } else { - if (sizeof(long) <= sizeof(long)) { - return PyInt_FromLong((long) value); -#ifdef HAVE_LONG_LONG - } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { - return PyLong_FromLongLong((PY_LONG_LONG) value); -#endif - } - } - { - int one = 1; int little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(long), - little, !is_unsigned); - } -} - /* CIntFromPyVerify */ - #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) @@ -6296,39 +5312,8 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, return (target_type) value;\ } -/* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { - const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0; - const int is_unsigned = neg_one > const_zero; - if (is_unsigned) { - if (sizeof(Py_intptr_t) < sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) { - return PyLong_FromUnsignedLong((unsigned long) value); -#ifdef HAVE_LONG_LONG - } else if (sizeof(Py_intptr_t) <= sizeof(unsigned PY_LONG_LONG)) { - return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); -#endif - } - } else { - if (sizeof(Py_intptr_t) <= sizeof(long)) { - return PyInt_FromLong((long) value); -#ifdef HAVE_LONG_LONG - } else if (sizeof(Py_intptr_t) <= sizeof(PY_LONG_LONG)) { - return PyLong_FromLongLong((PY_LONG_LONG) value); -#endif - } - } - { - int one = 1; int little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(Py_intptr_t), - little, !is_unsigned); - } -} - /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); @@ -6348,7 +5333,7 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -6483,7 +5468,7 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, #endif /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); @@ -6503,7 +5488,7 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -6638,7 +5623,7 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, #endif /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -6669,7 +5654,7 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -6700,7 +5685,7 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, } /* CIntFromPy */ - static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -6888,8 +5873,39 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, return (int) -1; } +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + const long neg_one = (long) -1, const_zero = (long) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(long) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(long) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(long) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(long), + little, !is_unsigned); + } +} + /* CIntFromPy */ - static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -7078,7 +6094,7 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, } /* CheckBinaryVersion */ - static int __Pyx_check_binary_version(void) { + static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); @@ -7094,7 +6110,7 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, } /* ModuleImport */ - #ifndef __PYX_HAVE_RT_ImportModule + #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; @@ -7112,7 +6128,7 @@ static PyObject *__Pyx_ImportModule(const char *name) { #endif /* TypeImport */ - #ifndef __PYX_HAVE_RT_ImportType + #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) @@ -7177,7 +6193,7 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class #endif /* FunctionImport */ - #ifndef __PYX_HAVE_RT_ImportFunction + #ifndef __PYX_HAVE_RT_ImportFunction #define __PYX_HAVE_RT_ImportFunction static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (**f)(void), const char *sig) { PyObject *d = 0; @@ -7231,7 +6247,7 @@ static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (** #endif /* InitStrings */ - static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { diff --git a/test/test_models.pyx b/test/test_models.pyx index 8e83a33..79792d9 100644 --- a/test/test_models.pyx +++ b/test/test_models.pyx @@ -1,5 +1,5 @@ """ -Tests for any methods that reside in the ccd.models sub-module. +Cythonized module for pulling in any cdef'd functions """ import numpy as np @@ -10,32 +10,6 @@ from test.shared import read_data from ccd import models from ccd.models.lasso cimport coefficient_matrix -def test_lasso_coefficient_matrix(): - sample = 'test/resources/sample_WA_grid08_row999_col1_normal.csv' - avg_days_yr = 365.25 - num_coefficients = (4, 6, 8) - #dates = read_data(sample)[0] - dates = np.asarray(read_data(sample)[0], dtype=np.long) - - for coefs in num_coefficients: - matrix = coefficient_matrix(dates, avg_days_yr, coefs) - col_idx = coefs - 1 - - used_cols = matrix[:, :col_idx] - unused_cols = matrix[:, col_idx:] - #print(matrix.shape) - #print(used_cols.shape) - #print(unused_cols.shape) - #print(len(dates)) - - # Ensure that we are covering the entire matrix array. - assert used_cols.shape[1] + unused_cols.shape[1] == matrix.shape[1] - - # Check to make sure we have our matrix columns filled out to a point. - assert np.where(used_cols == 0)[0].size == 0 - - # And make sure the rest is zero'd out. - if unused_cols.shape[1] > 0: - assert (np.where(unused_cols == 0)[0].size / unused_cols.shape[1])\ - == len(dates) +def coefficient_matrix_wrap(dates, ady, coefs): + return coefficient_matrix(dates, ady, coefs) \ No newline at end of file diff --git a/test/test_models_wrapper.py b/test/test_models_wrapper.py index 1a697f6..0f98c72 100644 --- a/test/test_models_wrapper.py +++ b/test/test_models_wrapper.py @@ -1,3 +1,38 @@ -from test.test_models import test_lasso_coefficient_matrix +""" +tests for functions in the models module +""" +# test_models is a cythonized wrapper module for accessing cdef'd functions in +# pure python modules. such as here for pytest +from test import test_models +from test.shared import read_data +import numpy as np -test_lasso_coefficient_matrix() + +def test_lasso_coefficient_matrix(): + sample = 'test/resources/sample_WA_grid08_row999_col1_normal.csv' + avg_days_yr = 365.25 + num_coefficients = (4, 6, 8) + + dates = np.asarray(read_data(sample)[0], dtype=np.long) + + for coefs in num_coefficients: + matrix = test_models.coefficient_matrix_wrap(dates, avg_days_yr, coefs) + col_idx = coefs - 1 + + used_cols = matrix[:, :col_idx] + unused_cols = matrix[:, col_idx:] + print(matrix.shape) + print(used_cols.shape) + print(unused_cols.shape) + print(len(dates)) + + # Ensure that we are covering the entire matrix array. + assert used_cols.shape[1] + unused_cols.shape[1] == matrix.shape[1] + + # Check to make sure we have our matrix columns filled out to a point. + assert np.where(used_cols == 0)[0].size == 0 + + # And make sure the rest is zero'd out. + if unused_cols.shape[1] > 0: + assert (np.where(unused_cols == 0)[0].size / unused_cols.shape[1])\ + == len(dates) From af672437170cd56ee7f32191d013285f28706239 Mon Sep 17 00:00:00 2001 From: clay austin Date: Thu, 24 Aug 2017 12:45:32 -0500 Subject: [PATCH 35/45] fix travis distribution tag --- .travis.yml | 2 +- setup.cfg | 3 +++ 2 files changed, 4 insertions(+), 1 deletion(-) diff --git a/.travis.yml b/.travis.yml index 2cf8117..9352cf8 100644 --- a/.travis.yml +++ b/.travis.yml @@ -22,7 +22,7 @@ deploy: user: klsmith-usgs password: secure: 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 + distributions: sdist bdist_wheel on: - distributions: sdist bdist_wheel repo: USGS-EROS/lcmap-pyccd branch: master diff --git a/setup.cfg b/setup.cfg index 6876d0d..99ce440 100644 --- a/setup.cfg +++ b/setup.cfg @@ -3,3 +3,6 @@ test=pytest [metadata] description-file = README.md + +[bdist_wheel] +python-tag = py3 \ No newline at end of file From a6c6d872da9c6d979ce6216aceb06f5f313e9aa8 Mon Sep 17 00:00:00 2001 From: clay austin Date: Thu, 24 Aug 2017 14:59:17 -0500 Subject: [PATCH 36/45] add MANIFEST.in to package up pyx and pxd files, in event cython available --- MANIFEST.in | 7 +++++++ 1 file changed, 7 insertions(+) create mode 100644 MANIFEST.in diff --git a/MANIFEST.in b/MANIFEST.in new file mode 100644 index 0000000..8522b11 --- /dev/null +++ b/MANIFEST.in @@ -0,0 +1,7 @@ +include ccd/models/lasso.pyx +include ccd/models/lasso.pxd +include ccd/models/robust_fit.pyx +include ccd/models/tmask.pyx +include ccd/models/tmask.pxd +include ccd/procedures.pyx +include test/test_models.pyx \ No newline at end of file From c5e3bbfe73e08b0e9c51ffa04d4da42b26b740ec Mon Sep 17 00:00:00 2001 From: klsmith-usgs Date: Mon, 28 Aug 2017 09:56:19 -0500 Subject: [PATCH 37/45] fix up the stability check some --- ccd/change.py | 33 +- notebooks/Dev.ipynb | 843 +----------------------------------- notebooks/ccd_example.ipynb | 99 +++-- 3 files changed, 110 insertions(+), 865 deletions(-) diff --git a/ccd/change.py b/ccd/change.py index 4908e96..adc7f50 100644 --- a/ccd/change.py +++ b/ccd/change.py @@ -15,7 +15,14 @@ def stable(models, dates, variogram, t_cg): - """Determine if we have a stable model to start building with + """ + Determine if we have a stable model to start building a time segment. + + The basis of this is to ensure that the delta between the start and end of + the model are not too offset from each other. + + Models and variogram must of be of the same shape and the representative + bands must be in the same order. Args: models: list of current representative/fitted models @@ -28,21 +35,27 @@ def stable(models, dates, variogram, t_cg): Boolean on whether stable or not """ # This could be written differently, or more performant using numpy in the - # future + # future. check_vals = [] - for idx, vario in enumerate(variogram): - rmse_norm = max(vario, models[idx].rmse) - slope = models[idx].fitted_model.coef_[0] * (dates[-1] - dates[0]) + for model, vario in zip(models, variogram): + # Our normalization factor. + rmse_norm = max(vario, model.rmse) + + # Look at the difference between the predicted values for the beginning + # and end. + slope_diff = model.fitted_model.coef_[0] * (dates[-1] - dates[0]) - check_val = (abs(slope) + abs(models[idx].residual[0]) + - abs(models[idx].residual[-1])) / rmse_norm + # Look at the start and end residuals, while also looking at the + # predicted delta. + check_val = (abs(slope_diff) + abs(model.residual[0]) + + abs(model.residual[-1])) / rmse_norm check_vals.append(check_val) - euc_norm = sum_of_squares(np.array(check_vals)) - log.debug('Stability norm: %s, Check against: %s', euc_norm, t_cg) + check = sum_of_squares(np.array(check_vals)) + log.debug('Stability check: %s against: %s', check, t_cg) - return euc_norm < t_cg + return check < t_cg def change_magnitude(residuals, variogram, comparison_rmse): diff --git a/notebooks/Dev.ipynb b/notebooks/Dev.ipynb index b3ec3aa..c25ca94 100644 --- a/notebooks/Dev.ipynb +++ b/notebooks/Dev.ipynb @@ -24,12 +24,13 @@ }, "outputs": [], "source": [ - "import logging\n", + "# import logging\n", "\n", - "__format = '%(asctime)s %(module)-10s::%(funcName)-20s - [%(lineno)-3d]%(message)s'\n", - "logging.basicConfig(level=logging.DEBUG,\n", - " format=__format,\n", - " datefmt='%Y-%m-%d %H:%M:%S')" + "# __format = '%(asctime)s %(module)-10s::%(funcName)-20s - [%(lineno)-3d]%(message)s'\n", + "# logging.basicConfig(level=logging.DEBUG,\n", + "# format=__format,\n", + "# datefmt='%Y-%m-%d %H:%M:%S')\n", + "import time" ] }, { @@ -46,829 +47,16 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": 9, "metadata": { "collapsed": false }, "outputs": [ { - "name": "stderr", + "name": "stdout", "output_type": "stream", "text": [ - "2017-04-26 11:18:18 procedures::fit_procedure - [69 ]Procedure selected: standard_procedure\n", - "2017-04-26 11:18:18 procedures::standard_procedure - [232]Build change models - dates: 443, obs: (7, 443), meow_size: 12, peek_size: 6\n", - "2017-04-26 11:18:18 procedures::standard_procedure - [257]Processing mask initial count: 295\n", - "2017-04-26 11:18:18 procedures::standard_procedure - [277]Variogram values: [ 166.5 194. 244.5 342. 288. 236. 795. ]\n", - "2017-04-26 11:18:18 procedures::standard_procedure - [282]Initialize for change model #: 1\n", - "2017-04-26 11:18:18 procedures::initialize - [380]Initial slice(0, 12, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(0, 12, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 3\n", - "2017-04-26 11:18:18 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(0, 13, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 6\n", - "2017-04-26 11:18:18 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(0, 14, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 6\n", - "2017-04-26 11:18:18 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(0, 15, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 6\n", - "2017-04-26 11:18:18 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(0, 16, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 6\n", - "2017-04-26 11:18:18 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(0, 17, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 9\n", - "2017-04-26 11:18:18 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(0, 18, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 10\n", - "2017-04-26 11:18:18 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(0, 19, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 10\n", - "2017-04-26 11:18:18 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(0, 20, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 12\n", - "2017-04-26 11:18:18 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(0, 21, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 12\n", - "2017-04-26 11:18:18 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(0, 22, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 13\n", - "2017-04-26 11:18:18 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(0, 23, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 13\n", - "2017-04-26 11:18:18 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(0, 24, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 11\n", - "2017-04-26 11:18:18 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:18 change ::stable - [45 ]Stability norm: 15.6713520606, Check against: 15.086272469388987\n", - "2017-04-26 11:18:18 procedures::initialize - [454]Unstable model, shift window to: slice(1, 14, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(1, 14, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:18 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:18 change ::stable - [45 ]Stability norm: 38.4516263842, Check against: 15.086272469388987\n", - "2017-04-26 11:18:18 procedures::initialize - [454]Unstable model, shift window to: slice(2, 14, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(2, 14, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 2\n", - "2017-04-26 11:18:18 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(2, 15, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 2\n", - "2017-04-26 11:18:18 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(2, 16, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 3\n", - "2017-04-26 11:18:18 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(2, 17, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 3\n", - "2017-04-26 11:18:18 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:18 change ::stable - [45 ]Stability norm: 11.02388249, Check against: 15.086272469388987\n", - "2017-04-26 11:18:18 procedures::initialize - [459]Stable start found: slice(2, 14, None)\n", - "2017-04-26 11:18:18 procedures::lookback - [660]Previous break: 0 model window: slice(2, 14, None)\n", - "2017-04-26 11:18:18 procedures::lookback - [680]Considering index: 1 using peek window: slice(1, None, -1)\n", - "2017-04-26 11:18:18 procedures::lookback - [691]RMSE values for comparison: [155.89328630465241, 212.2663416593137, 162.23198769725823, 572.96424740065072, 441.20232317818807]\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 7.63524426 10.36418348]\n", - "2017-04-26 11:18:18 procedures::lookback - [714]Including index: 1\n", - "2017-04-26 11:18:18 procedures::lookback - [680]Considering index: 0 using peek window: slice(0, None, -1)\n", - "2017-04-26 11:18:18 procedures::lookback - [691]RMSE values for comparison: [155.89328630465241, 212.2663416593137, 162.23198769725823, 572.96424740065072, 441.20232317818807]\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 10.36418348]\n", - "2017-04-26 11:18:18 procedures::lookback - [714]Including index: 0\n", - "2017-04-26 11:18:18 procedures::standard_procedure - [318]Extend change model\n", - "2017-04-26 11:18:18 procedures::lookforward - [503]lookforward initial model window: slice(0, 14, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(14, 20, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.01805228 1.43477468 3.22008332 31.76932565 37.0512988\n", - " 32.95552316]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(15, 21, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.87964673 3.5629607 32.90772591 37.64359803 34.19776917\n", - " 7.25565514]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(16, 22, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 5.6753873 37.35350222 45.27449933 35.04986942 7.06390416\n", - " 1.72471437]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(17, 23, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 21.14709505 23.02187717 31.57754913 7.19927185 1.79466122\n", - " 8.28591428]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(18, 24, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 104.95569382 230.09745417 35.20139291 1.69756357 20.61531645\n", - " 25.72252528]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 18\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(18, 24, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 230.09745417 35.20139291 1.69756357 20.61531645 25.72252528\n", - " 28.11840054]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 18\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(18, 24, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 35.20139291 1.69756357 20.61531645 25.72252528 28.11840054\n", - " 40.6541024 ]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(19, 25, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.81948503 28.33320424 34.42556803 36.11331538 47.16544724\n", - " 12.92747012]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(20, 26, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 29.44794652 36.0731875 37.94361672 48.21241183 12.97615887\n", - " 6.48602983]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(21, 27, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 36.77077622 38.76390222 48.78006121 12.28399404 4.65605052\n", - " 286.75444614]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 21\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(21, 27, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 38.76390222 48.78006121 12.28399404 4.65605052 286.75444614\n", - " 235.22513565]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 21\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(21, 27, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 48.78006121 12.28399404 4.65605052 286.75444614 235.22513565\n", - " 68.98470392]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 21\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(21, 27, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 12.28399404 4.65605052 286.75444614 235.22513565 68.98470392\n", - " 0.81108973]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(22, 28, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 3.37667314 257.08999304 220.43956225 68.8438475 2.11485092\n", - " 40.79123646]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(23, 29, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 242.39946167 208.60901756 64.56914924 2.1552056 33.17595027\n", - " 6.83217254]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 23\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(23, 29, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 208.60901756 64.56914924 2.1552056 33.17595027 6.83217254\n", - " 230.09681632]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 23\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(23, 29, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 64.56914924 2.1552056 33.17595027 6.83217254 230.09681632\n", - " 160.18230065]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 23\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(23, 29, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 2.1552056 33.17595027 6.83217254 230.09681632 160.18230065\n", - " 393.34919961]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(24, 30, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 25.59596667 6.16744565 185.185496 133.10918649 324.23939691\n", - " 149.68460059]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(25, 31, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 6.16744565 185.185496 133.10918649 324.23939691 149.68460059\n", - " 7.37070042]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(26, 32, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 185.185496 133.10918649 324.23939691 149.68460059 7.37070042\n", - " 36.44358024]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 26\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(26, 32, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 133.10918649 324.23939691 149.68460059 7.37070042 36.44358024\n", - " 21.01138639]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 26\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(26, 32, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 324.23939691 149.68460059 7.37070042 36.44358024 21.01138639\n", - " 9.60679516]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 26\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(26, 32, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 149.68460059 7.37070042 36.44358024 21.01138639 9.60679516\n", - " 43.80356945]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 26\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(26, 32, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 7.37070042 36.44358024 21.01138639 9.60679516 43.80356945\n", - " 282.68074418]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(27, 33, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 36.44358024 21.01138639 9.60679516 43.80356945 282.68074418\n", - " 156.57174308]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 27\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(27, 33, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 21.01138639 9.60679516 43.80356945 282.68074418 156.57174308\n", - " 74.73027312]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(28, 34, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [562]Retrain models, model_span: 2608 fit_span: 1920\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.72611822 5.89308242 100.65602309 57.9136335 22.68452395\n", - " 6.7578549 ]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(29, 35, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 6.04463466 102.79639159 59.22219001 23.10874391 6.83523937\n", - " 0.36144477]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(30, 36, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 102.79639159 59.22219001 23.10874391 6.83523937 0.36144477\n", - " 0.65410274]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 30\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(30, 36, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 59.22219001 23.10874391 6.83523937 0.36144477 0.65410274\n", - " 4.81211106]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 30\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(30, 36, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 23.10874391 6.83523937 0.36144477 0.65410274 4.81211106\n", - " 1.94875444]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(31, 37, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 6.7578549 0.35185572 0.63932415 4.59920945 1.94145115 3.58795256]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(32, 38, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.35185572 0.63932415 4.59920945 1.94145115 3.58795256\n", - " 13.26474899]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(33, 39, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.63932415 4.59920945 1.94145115 3.58795256 13.26474899\n", - " 16.80009475]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(34, 40, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 4.81211106 1.94875444 3.5835365 13.270834 16.64441198\n", - " 37.65636037]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(35, 41, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.94145115 3.58795256 13.26474899 16.80009475 36.42949535\n", - " 15.24469086]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(36, 42, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 3.58795256 13.26474899 16.80009475 36.42949535 15.24469086\n", - " 1.81869981]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(37, 43, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 13.26474899 16.80009475 36.42949535 15.24469086 1.81869981\n", - " 42.30821133]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(38, 44, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 16.80009475 36.42949535 15.24469086 1.81869981 42.30821133\n", - " 60.85664281]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(39, 45, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 39.20193278 15.25046179 2.02044434 45.47702021 63.71519548\n", - " 44.4177054 ]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 39\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(39, 45, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 15.15405723 1.91653757 43.63306283 61.6647668 42.97295793\n", - " 87.62530472]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(40, 46, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [562]Retrain models, model_span: 3568 fit_span: 2608\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 12.23827343 66.82871133 89.29592931 59.03325885 106.09376959\n", - " 81.20590896]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(41, 47, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 66.82871133 89.29592931 59.03325885 106.09376959 81.20590896\n", - " 57.08829037]\n", - "2017-04-26 11:18:18 procedures::lookforward - [593]Change detected at: 41\n", - "2017-04-26 11:18:18 procedures::standard_procedure - [325]Accumulate results, 1 so far\n", - "2017-04-26 11:18:18 procedures::standard_procedure - [282]Initialize for change model #: 2\n", - "2017-04-26 11:18:18 procedures::initialize - [380]Initial slice(41, 53, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [393]Checking window: slice(41, 53, None)\n", - "2017-04-26 11:18:18 procedures::initialize - [404]Number of Tmask outliers found: 0\n", - "2017-04-26 11:18:18 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:18 change ::stable - [45 ]Stability norm: 5.28162920484, Check against: 15.086272469388987\n", - "2017-04-26 11:18:18 procedures::initialize - [459]Stable start found: slice(41, 53, None)\n", - "2017-04-26 11:18:18 procedures::standard_procedure - [318]Extend change model\n", - "2017-04-26 11:18:18 procedures::lookforward - [503]lookforward initial model window: slice(41, 53, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(53, 59, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 2.08417506 0.46922468 1.32385729 3.54661649 1.22306164 0.54624014]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(54, 60, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.49084938 0.53150537 2.63114827 0.52197035 0.83128473\n", - " 116.71787738]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(55, 61, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.59968287 2.97719287 0.63760698 0.61839327 116.34818754\n", - " 0.35684012]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(56, 62, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 2.11224106 0.37569735 0.76828493 113.42930149 0.194137\n", - " 0.33613264]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(57, 63, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.32800867 1.30457008 111.04842045 0.20883008 0.42596095\n", - " 0.6897422 ]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(58, 64, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.20998114 111.46839032 0.1786555 0.37552821 0.60120161\n", - " 1.85148255]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(59, 65, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 116.20886244 0.49434776 0.51586679 1.4752448 2.68266062\n", - " 4.8919905 ]\n", - "2017-04-26 11:18:18 procedures::lookforward - [599]Outlier detected at: 59\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(59, 65, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.49434776 0.51586679 1.4752448 2.68266062 4.8919905 2.75021856]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(60, 66, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.48818886 1.46741898 2.6557315 4.7233034 2.74667497 1.54577157]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(61, 67, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.46127827 2.61711153 4.37447764 2.59831404 1.46689253 1.66649715]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(62, 68, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 2.73514947 3.34418511 1.79112083 1.52367172 1.47934323 0.76255801]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(63, 69, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 3.47144639 1.5554186 0.50632451 1.46357665 0.74777343 0.78873502]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(64, 70, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.97299646 0.83932035 1.44317048 0.90586288 1.10733262\n", - " 16.74850197]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(65, 71, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.83932035 1.44317048 0.90586288 1.10733262 16.74850197\n", - " 0.67311076]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(66, 72, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.44317048 0.90586288 1.10733262 16.74850197 0.67311076\n", - " 0.90740219]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(67, 73, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.90586288 1.10733262 16.74850197 0.67311076 0.90740219\n", - " 0.52612839]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(68, 74, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.10733262 16.74850197 0.67311076 0.90740219 0.52612839\n", - " 1.33888366]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(69, 75, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 16.74850197 0.67311076 0.90740219 0.52612839 1.33888366\n", - " 2.2242779 ]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(70, 76, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.67311076 0.90740219 0.52612839 1.33888366 2.2242779 0.42553358]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(71, 77, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.90740219 0.52612839 1.33888366 2.2242779 0.42553358 0.74500453]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(72, 78, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.52612839 1.33888366 2.2242779 0.42553358 0.74500453 1.33927292]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(73, 79, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.33888366 2.2242779 0.42553358 0.74500453 1.33927292 1.94554131]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(74, 80, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 2.2242779 0.42553358 0.74500453 1.33927292 1.94554131 0.715064 ]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(75, 81, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.42553358 0.74500453 1.33927292 1.94554131 0.715064 0.55361672]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(76, 82, None)\n", - "2017-04-26 11:18:18 procedures::lookforward - [562]Retrain models, model_span: 2160 fit_span: 1552\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.34240976 0.41939513 0.4402188 0.1992398 0.13409743 0.05695346]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(77, 83, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.41939513 0.4402188 0.1992398 0.13409743 0.05695346 0.16461895]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(78, 84, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.4402188 0.1992398 0.13409743 0.05695346 0.16461895 0.40581684]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(79, 85, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.1992398 0.13409743 0.05695346 0.16461895 0.40581684 6.23737619]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(80, 86, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.13409743 0.05695346 0.16461895 0.40581684 6.23737619 0.7082796 ]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(81, 87, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.05695346 0.16461895 0.40581684 6.23737619 0.7082796 0.14020476]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(82, 88, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.16461895 0.40581684 6.23737619 0.7082796 0.14020476 0.35488338]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(83, 89, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.40581684 6.23737619 0.7082796 0.14020476 0.35488338 0.17061145]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(84, 90, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 6.23737619 0.7082796 0.14020476 0.35488338 0.17061145 3.70727624]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(85, 91, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.7082796 0.14020476 0.35488338 0.17061145 3.70727624 0.99223306]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(86, 92, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.14020476 0.35488338 0.17061145 3.70727624 0.99223306 0.15755051]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(87, 93, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.35488338 0.17061145 3.70727624 0.99223306 0.15755051 0.52208973]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(88, 94, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.17061145 3.70727624 0.99223306 0.15755051 0.52208973 0.56635892]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(89, 95, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 3.70727624 0.99223306 0.15755051 0.52208973 0.56635892 0.41204096]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(90, 96, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.99223306 0.15755051 0.52208973 0.56635892 0.41204096 2.41097441]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(91, 97, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.15755051 0.52208973 0.56635892 0.41204096 2.41097441 0.48405451]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(92, 98, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.52208973 0.56635892 0.41204096 2.41097441 0.48405451 0.51733991]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(93, 99, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.56635892 0.41204096 2.41097441 0.48405451 0.51733991 1.66541759]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(94, 100, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.41204096 2.41097441 0.48405451 0.51733991 1.66541759 1.11750236]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(95, 101, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 2.41097441 0.48405451 0.51733991 1.66541759 1.11750236 0.58039616]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(96, 102, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.48405451 0.51733991 1.66541759 1.11750236 0.58039616 7.81138985]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(97, 103, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.51733991 1.66541759 1.11750236 0.58039616 7.81138985 0.44242968]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(98, 104, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.66541759 1.11750236 0.58039616 7.81138985 0.44242968 0.31495482]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(99, 105, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.11750236 0.58039616 7.81138985 0.44242968 0.31495482\n", - " 145.52585592]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(100, 106, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.58039616 7.81138985 0.44242968 0.31495482 145.52585592\n", - " 2.77892201]\n", - "2017-04-26 11:18:18 procedures::lookforward - [534]Detecting change for slice(101, 107, None)\n", - "2017-04-26 11:18:18 change ::change_magnitude - [71 ]Magnitudes of change: [ 7.81138985e+00 4.42429681e-01 3.14954817e-01 1.45525856e+02\n", - " 2.77892201e+00 5.31691299e-02]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(102, 108, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 4.42429681e-01 3.14954817e-01 1.45525856e+02 2.77892201e+00\n", - " 5.31691299e-02 3.78435983e-01]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(103, 109, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 3.14954817e-01 1.45525856e+02 2.77892201e+00 5.31691299e-02\n", - " 3.78435983e-01 3.21798228e+00]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(104, 110, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.45525856e+02 2.77892201e+00 5.31691299e-02 3.78435983e-01\n", - " 3.21798228e+00 1.73935030e+02]\n", - "2017-04-26 11:18:19 procedures::lookforward - [599]Outlier detected at: 104\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(104, 110, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 2.77892201e+00 5.31691299e-02 3.78435983e-01 3.21798228e+00\n", - " 1.73935030e+02 1.73681533e+02]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(105, 111, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [562]Retrain models, model_span: 2912 fit_span: 2160\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.60851740e-01 1.33119946e-01 1.81223185e+00 1.61261477e+02\n", - " 1.59750655e+02 2.57997791e+01]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(106, 112, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.33119946e-01 1.81223185e+00 1.61261477e+02 1.59750655e+02\n", - " 2.57997791e+01 2.09106357e-01]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(107, 113, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.81223185 161.26147741 159.75065532 25.79977908 0.20910636\n", - " 1.63933359]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(108, 114, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 161.26147741 159.75065532 25.79977908 0.20910636 1.63933359\n", - " 1.09268457]\n", - "2017-04-26 11:18:19 procedures::lookforward - [599]Outlier detected at: 108\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(108, 114, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 159.75065532 25.79977908 0.20910636 1.63933359 1.09268457\n", - " 0.56847092]\n", - "2017-04-26 11:18:19 procedures::lookforward - [599]Outlier detected at: 108\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(108, 114, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 25.79977908 0.20910636 1.63933359 1.09268457 0.56847092\n", - " 6.01698273]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(109, 115, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.20910636 1.63933359 1.09268457 0.56847092 6.01698273 9.01470639]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(110, 116, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.63933359 1.09268457 0.56847092 6.01698273 9.01470639\n", - " 27.78953582]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(111, 117, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.09268457 0.56847092 6.01698273 9.01470639 27.78953582\n", - " 70.88627663]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(112, 118, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 0.56847092 6.01698273 9.01470639 27.78953582 70.88627663\n", - " 256.91715511]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(113, 119, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 6.01698273 9.01470639 27.78953582 70.88627663 256.91715511\n", - " 244.03027022]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(114, 120, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 9.01470639 27.78953582 70.88627663 256.91715511 244.03027022\n", - " 112.42755957]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(115, 121, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 27.78953582 70.88627663 256.91715511 244.03027022 112.42755957\n", - " 165.73474814]\n", - "2017-04-26 11:18:19 procedures::lookforward - [593]Change detected at: 115\n", - "2017-04-26 11:18:19 procedures::standard_procedure - [325]Accumulate results, 2 so far\n", - "2017-04-26 11:18:19 procedures::standard_procedure - [282]Initialize for change model #: 3\n", - "2017-04-26 11:18:19 procedures::initialize - [380]Initial slice(115, 127, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(115, 130, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 0\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 114.900943229, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(116, 131, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(116, 131, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 0\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 208.735959318, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(117, 132, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(117, 132, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 281.877868669, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(118, 132, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(118, 132, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 2\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(118, 133, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 76.3301336445, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(119, 133, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(119, 133, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 0\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 16.3745254647, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(120, 134, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(120, 134, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 28.6276079406, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(121, 134, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(121, 134, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 0\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 31.2131567362, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(122, 135, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(122, 135, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 0\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 65.7921199571, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(123, 136, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(123, 136, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 0\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 33.8263838242, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(124, 137, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(124, 137, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 0\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 26.6647682826, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(125, 138, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(125, 138, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 0\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 28.9454862642, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(126, 139, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(126, 139, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 0\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 38.766545782, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(127, 140, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(127, 140, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 0\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 27.9295271968, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(128, 141, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(128, 141, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(128, 142, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(128, 143, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(128, 144, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(128, 145, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(128, 146, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(128, 147, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 199.152683351, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(129, 147, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(129, 147, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 197.379566619, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(130, 147, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(130, 147, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 2\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(130, 148, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 233.712364841, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(131, 148, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(131, 148, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 118.116576428, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(132, 148, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(132, 148, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(132, 149, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 0\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 72.0506949332, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(133, 150, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(133, 150, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 0\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 59.0504413515, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(134, 151, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(134, 151, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 42.8002426052, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(135, 151, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(135, 151, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 41.652269461, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(136, 151, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(136, 151, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 29.3940771159, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(137, 151, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(137, 151, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(137, 152, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 3\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 47.9908467403, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(138, 150, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(138, 150, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(138, 151, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 7\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(138, 152, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 7\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(138, 153, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 6\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(138, 154, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 6\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(138, 155, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 8\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(138, 156, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 11\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(138, 157, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 10\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(138, 158, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 12\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(138, 159, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 13\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(138, 160, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 12\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(138, 161, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 13\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(138, 162, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 13\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(138, 163, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 13\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 74.4797059912, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(139, 151, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(139, 151, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 0\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 39.5389798948, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [454]Unstable model, shift window to: slice(140, 152, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(140, 152, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(140, 153, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 11.21664605, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [459]Stable start found: slice(140, 152, None)\n", - "2017-04-26 11:18:19 procedures::lookback - [660]Previous break: 115 model window: slice(140, 152, None)\n", - "2017-04-26 11:18:19 procedures::lookback - [680]Considering index: 139 using peek window: slice(139, 134, -1)\n", - "2017-04-26 11:18:19 procedures::lookback - [691]RMSE values for comparison: [62.660525793721781, 80.674619118320393, 294.61316997542701, 260.41155732544894, 174.68256166437121]\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.06112011 12.36486004 17.82149303 25.08221955 38.84464398]\n", - "2017-04-26 11:18:19 procedures::lookback - [714]Including index: 139\n", - "2017-04-26 11:18:19 procedures::lookback - [680]Considering index: 138 using peek window: slice(138, 133, -1)\n", - "2017-04-26 11:18:19 procedures::lookback - [691]RMSE values for comparison: [62.660525793721781, 80.674619118320393, 294.61316997542701, 260.41155732544894, 174.68256166437121]\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 12.36486004 17.82149303 25.08221955 38.84464398 30.63221217]\n", - "2017-04-26 11:18:19 procedures::lookback - [714]Including index: 138\n", - "2017-04-26 11:18:19 procedures::lookback - [680]Considering index: 137 using peek window: slice(137, 132, -1)\n", - "2017-04-26 11:18:19 procedures::lookback - [691]RMSE values for comparison: [62.660525793721781, 80.674619118320393, 294.61316997542701, 260.41155732544894, 174.68256166437121]\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 17.82149303 25.08221955 38.84464398 30.63221217 21.57612686]\n", - "2017-04-26 11:18:19 procedures::lookback - [698]Change detected for index: 137\n", - "2017-04-26 11:18:19 procedures::standard_procedure - [318]Extend change model\n", - "2017-04-26 11:18:19 procedures::lookforward - [503]lookforward initial model window: slice(138, 152, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(152, 158, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 2.68622977 4.84246453 23.16799593 78.43121497 13.89405568\n", - " 58.81633548]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(153, 159, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 2.88275826 16.71390269 64.20941745 7.87756834 45.57656551\n", - " 27.23101943]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(154, 160, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 12.01644239 49.91736341 3.46586512 29.70348349 31.31631748\n", - " 4.43229555]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(155, 161, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 22.53242975 3.75195468 33.31837586 43.011789 4.69804607\n", - " 11.26028868]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(156, 162, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 98.17831394 147.31957416 10.93562048 3.65982634 14.28276865\n", - " 26.06106904]\n", - "2017-04-26 11:18:19 procedures::lookforward - [599]Outlier detected at: 156\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(156, 162, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 147.31957416 10.93562048 3.65982634 14.28276865 26.06106904\n", - " 22.48970409]\n", - "2017-04-26 11:18:19 procedures::lookforward - [599]Outlier detected at: 156\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(156, 162, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 10.93562048 3.65982634 14.28276865 26.06106904 22.48970409\n", - " 36.75949995]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(157, 163, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 8.20336524 45.81372008 53.53157646 49.69685047 72.71404199\n", - " 60.92581546]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(158, 164, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 41.80494685 49.26621166 44.79989678 65.68218819 53.81891871\n", - " 85.52108715]\n", - "2017-04-26 11:18:19 procedures::lookforward - [593]Change detected at: 158\n", - "2017-04-26 11:18:19 procedures::standard_procedure - [325]Accumulate results, 3 so far\n", - "2017-04-26 11:18:19 procedures::standard_procedure - [282]Initialize for change model #: 4\n", - "2017-04-26 11:18:19 procedures::initialize - [380]Initial slice(158, 170, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(158, 178, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [423]Insufficient time or observations after Tmask, extending model window\n", - "2017-04-26 11:18:19 procedures::initialize - [393]Checking window: slice(158, 179, None)\n", - "2017-04-26 11:18:19 procedures::initialize - [404]Number of Tmask outliers found: 1\n", - "2017-04-26 11:18:19 procedures::initialize - [442]Generating models to check for stability\n", - "2017-04-26 11:18:19 change ::stable - [45 ]Stability norm: 11.4715441057, Check against: 15.086272469388987\n", - "2017-04-26 11:18:19 procedures::initialize - [459]Stable start found: slice(158, 178, None)\n", - "2017-04-26 11:18:19 procedures::standard_procedure - [318]Extend change model\n", - "2017-04-26 11:18:19 procedures::lookforward - [503]lookforward initial model window: slice(158, 178, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(178, 184, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 2.03282148 2.66603477 6.74052252 11.81869303 8.51087822\n", - " 85.89445059]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(179, 185, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.63534541 4.34348521 8.80318169 6.26749924 79.13742503\n", - " 61.28117292]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(180, 186, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 3.47837122 7.50413044 5.38613781 75.6321146 57.99427255\n", - " 29.3988275 ]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(181, 187, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [543]Retrain models, less than 24 samples\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 6.20029936 4.33942541 74.07559486 56.61297508 28.41516886\n", - " 22.01474522]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(182, 188, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 4.33942541 74.07559486 56.61297508 28.41516886 22.01474522\n", - " 10.66699821]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(183, 189, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 74.07559486 56.61297508 28.41516886 22.01474522 10.66699821\n", - " 17.32771344]\n", - "2017-04-26 11:18:19 procedures::lookforward - [599]Outlier detected at: 183\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(183, 189, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 56.61297508 28.41516886 22.01474522 10.66699821 17.32771344\n", - " 9.91654999]\n", - "2017-04-26 11:18:19 procedures::lookforward - [599]Outlier detected at: 183\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(183, 189, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 28.41516886 22.01474522 10.66699821 17.32771344 9.91654999\n", - " 6.18387223]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(184, 190, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [562]Retrain models, model_span: 640 fit_span: 416\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 9.23864212 3.90512458 8.35894727 4.78199022 2.47568647 1.92780105]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(185, 191, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 3.90512458 8.35894727 4.78199022 2.47568647 1.92780105 2.80844848]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(186, 192, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 8.35894727 4.78199022 2.47568647 1.92780105 2.80844848 9.1764796 ]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(187, 193, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 4.78199022 2.47568647 1.92780105 2.80844848 9.1764796\n", - " 12.01941344]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(188, 194, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 2.47568647 1.92780105 2.80844848 9.1764796 12.01941344\n", - " 5.33423983]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(189, 195, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 1.92780105 2.80844848 9.1764796 12.01941344 5.33423983\n", - " 7.32456082]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(190, 196, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 2.80844848 9.1764796 12.01941344 5.33423983 7.32456082\n", - " 50.41760397]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(191, 197, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 9.1764796 12.01941344 5.33423983 7.32456082 50.41760397\n", - " 6.49321586]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(192, 198, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 12.01941344 5.33423983 7.32456082 50.41760397 6.49321586\n", - " 3.36568552]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(193, 199, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 5.33423983 7.32456082 50.41760397 6.49321586 3.36568552\n", - " 22.65167954]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(194, 200, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 7.32456082 50.41760397 6.49321586 3.36568552 22.65167954\n", - " 46.66167461]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(195, 201, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 50.41760397 6.49321586 3.36568552 22.65167954 46.66167461\n", - " 17.47038211]\n", - "2017-04-26 11:18:19 procedures::lookforward - [599]Outlier detected at: 195\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(195, 201, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 6.49321586 3.36568552 22.65167954 46.66167461 17.47038211\n", - " 35.56938508]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(196, 202, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 3.36568552 22.65167954 46.66167461 17.47038211 35.56938508\n", - " 17.7775527 ]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(197, 203, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 22.65167954 46.66167461 17.47038211 35.56938508 17.7775527\n", - " 7.00207128]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(198, 204, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 46.66167461 17.47038211 35.56938508 17.7775527 7.00207128\n", - " 3.53041965]\n", - "2017-04-26 11:18:19 procedures::lookforward - [599]Outlier detected at: 198\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(198, 204, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 17.47038211 35.56938508 17.7775527 7.00207128 3.53041965\n", - " 16.72488327]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(199, 205, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 35.56938508 17.7775527 7.00207128 3.53041965 16.72488327\n", - " 12.50002807]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(200, 206, None)\n", - "2017-04-26 11:18:19 procedures::lookforward - [562]Retrain models, model_span: 984 fit_span: 640\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 3.11885503 5.78339091 12.57224538 16.24634351 27.82153468\n", - " 33.33569226]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(201, 207, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 5.73538371 12.680835 16.13956581 27.82503075 33.41189281\n", - " 27.75030157]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(202, 208, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 12.71810784 16.29741788 28.0539272 33.66779056 27.95593671\n", - " 22.68069421]\n", - "2017-04-26 11:18:19 procedures::lookforward - [534]Detecting change for slice(203, 209, None)\n", - "2017-04-26 11:18:19 change ::change_magnitude - [71 ]Magnitudes of change: [ 15.93928594 27.60930595 33.20482524 27.57332468 22.41109365\n", - " 38.92233261]\n", - "2017-04-26 11:18:19 procedures::lookforward - [593]Change detected at: 203\n", - "2017-04-26 11:18:19 procedures::standard_procedure - [325]Accumulate results, 4 so far\n", - "2017-04-26 11:18:19 procedures::catch - [745]Catching observations: slice(203, 226, None)\n", - "2017-04-26 11:18:19 procedures::standard_procedure - [341]change detection complete\n", - "2017-04-26 11:18:19 __init__ ::detect - [153]Total time for algorithm: 1.4010000228881836\n" + "1.2226929664611816\n" ] } ], @@ -883,8 +71,19 @@ "\n", "data = read_data('../test/resources/test_3657_3610_observations.csv')\n", "dates, blues, greens, reds, nirs, swir1s, swir2s, thermals, qas = data\n", - "results = ccd.detect(dates, blues, greens, reds, nirs, swir1s, swir2s, thermals, qas, params=params)" + "t = time.time()\n", + "results = ccd.detect(dates, blues, greens, reds, nirs, swir1s, swir2s, thermals, qas, params=params)\n", + "print(time.time() - t)" ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [] } ], "metadata": { diff --git a/notebooks/ccd_example.ipynb b/notebooks/ccd_example.ipynb index c1048a5..22993ba 100644 --- a/notebooks/ccd_example.ipynb +++ b/notebooks/ccd_example.ipynb @@ -87,52 +87,78 @@ "End Date: 2014-11-02 00:00:00\n", "\n", "Result: 0\n", - "Start Date: 1984-06-24 00:00:00\n", - "End Date: 1994-04-17 00:00:00\n", - "Break Date: 1994-06-04 00:00:00\n", + "Start Date: 1984-05-23 00:00:00\n", + "End Date: 1993-06-01 00:00:00\n", + "Break Date: 1993-06-17 00:00:00\n", "QA: 8\n", - "Norm: 3384.4553657359907\n", - "\n", + "Norm: 2600.4931939326316\n", "Change prob: 1\n", + "Blue: [ 4.58314743e-02 3.33345234e+02 6.21344097e+01 5.41421085e+01\n", + " 3.10319812e+01 2.50845892e+01 4.91272964e+00]\n", + "Green: [ 4.87907159e-02 3.26802375e+02 3.67446381e+01 4.78360842e+01\n", + " 1.10423621e+01 2.06916027e+01 -9.02650313e+00]\n", + "Red: [ 8.41903913e-02 5.46777638e+02 -8.72414168e+00 3.74124079e+01\n", + " -6.03337432e+01 4.81676540e+00 -5.16853149e+01]\n", + "NIR: [ -6.44149821e-02 -2.93256284e+02 -1.79480553e+02 1.73335148e+02\n", + " 4.94866551e+01 -4.43830337e+01 1.40287464e+02]\n", + "SWIR1: [ 7.82904523e-02 1.80730585e+02 -2.06790010e+02 -2.21747517e+02\n", + " -1.60016098e+02 -6.66320146e+00 -1.83629053e+02]\n", + "SWIR2: [ 8.55359710e-02 2.27229388e+02 -1.45321621e+01 -2.42494899e+02\n", + " -1.56464516e+02 1.17483079e+01 -1.80476099e+02]\n", + "Thermal: [ 2.22981327e-01 -1.38370151e+03 4.62444374e+00 1.83116278e+02\n", + " -4.12491881e+02 7.52942534e+01 -1.89032643e+02]\n", + "\n", "Result: 1\n", - "Start Date: 1994-06-04 00:00:00\n", + "Start Date: 1994-04-01 00:00:00\n", "End Date: 2003-07-15 00:00:00\n", "Break Date: 2003-07-23 00:00:00\n", "QA: 8\n", - "Norm: 3367.177618583219\n", - "\n", + "Norm: 3447.9261995039014\n", "Change prob: 1\n", - "Result: 2\n", - "Start Date: 2005-08-29 00:00:00\n", - "End Date: 2009-07-23 00:00:00\n", - "Break Date: 2009-08-16 00:00:00\n", - "QA: 6\n", - "Norm: 1811.5624177853238\n", + "Blue: [ 1.81317049e-02 1.45808897e+02 1.16809239e+02 1.07479901e+01\n", + " 8.11010424e+01 -0.00000000e+00 -2.13594314e+01]\n", + "Green: [ -4.01451123e-04 9.76913310e+01 1.32606542e+02 0.00000000e+00\n", + " 7.21689874e+01 -4.19581416e+00 -1.58958750e+01]\n", + "Red: [ -1.88064244e-02 1.84577645e+02 1.68817464e+02 0.00000000e+00\n", + " 9.38281840e+01 -6.69276126e+00 -1.67964004e+01]\n", + "NIR: [ -5.24251710e-02 0.00000000e+00 1.13308333e+02 4.72702816e+01\n", + " 3.28348455e+01 -5.65996330e+00 -6.01221244e+01]\n", + "SWIR1: [ 4.33263372e-03 -6.93920635e+01 5.54438167e+01 -9.39780709e+01\n", + " -4.56121038e+01 7.42090228e+00 -5.97106712e+01]\n", + "SWIR2: [ 4.52284529e-03 -4.59529046e+01 7.42262607e+01 -6.94913518e+01\n", + " -3.21255305e+01 1.15833174e+01 -5.14614806e+01]\n", + "Thermal: [ 2.53268760e-02 -1.14912888e+03 6.14671293e+01 1.34302091e+01\n", + " 6.58151981e+01 2.79800989e+01 1.00416097e+02]\n", "\n", - "Change prob: 1\n", - "Result: 3\n", - "Start Date: 2009-08-16 00:00:00\n", - "End Date: 2012-08-16 00:00:00\n", - "Break Date: 2013-05-23 00:00:00\n", + "Result: 2\n", + "Start Date: 2007-08-11 00:00:00\n", + "End Date: 2014-07-13 00:00:00\n", + "Break Date: 2014-07-13 00:00:00\n", "QA: 8\n", - "Norm: 1768.9116667040014\n", - "\n", - "Change prob: 1\n", - "Result: 4\n", - "Start Date: 2013-05-23 00:00:00\n", - "End Date: 2014-10-09 00:00:00\n", - "Break Date: 2014-10-09 00:00:00\n", - "QA: 24\n", - "Norm: 0.0\n", - "\n", - "Change prob: 0\n" + "Norm: 631.51601478257\n", + "Change prob: 0\n", + "Blue: [ -1.31283949e-01 6.94932304e+02 1.12564290e+02 2.75961249e+02\n", + " 9.51823310e+01 4.27886979e+01 4.14697337e+01]\n", + "Green: [ -1.66400853e-01 7.27305572e+02 1.25489335e+02 2.99994319e+02\n", + " 1.50886855e+02 4.30656403e+01 6.62542849e+01]\n", + "Red: [ -2.22906662e-01 9.04169683e+02 1.76233408e+02 2.66500997e+02\n", + " 1.56785511e+02 9.41033573e+00 9.85723260e+01]\n", + "NIR: [ -0.9119238 649.08216976 -54.98958474 600.80109924 554.8984993\n", + " 135.88317692 89.24539346]\n", + "SWIR1: [ -0.83710533 771.75928517 141.7457266 135.12311187 299.06387831\n", + " -4.86435929 127.12002793]\n", + "SWIR2: [ -5.14687641e-01 5.23030024e+02 1.77487352e+02 5.09588418e+01\n", + " 1.89698646e+02 -2.33575099e+01 1.15561516e+02]\n", + "Thermal: [ -2.52973256e-01 -1.59827841e+03 3.08204985e-02 -1.53859996e+02\n", + " 2.76755712e+01 2.61110777e+00 5.97096103e+01]\n", + "\n" ] }, { "data": { - "image/png": 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/9MWsObd1/zsjSFX+EVIO/Tfs6oFo7PdbaE++hBSHFbUj/tal7wv0uMZCme0K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y6++OLytPb29tTW1vYYN2rUqPK8JOno6DhoTPft7jGHWk5tbW26urqyZ8+evt0QAAAAAKBPHNWp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\n9XnllVdyz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dWzZsSG9QMciWYyIRJRcTkxQy2AXbgQMHIAgCKioq+r0H8GKOiIiIaKQaCYlJJjyIiEgr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"text/plain": [ - "" + "" ] }, "metadata": {}, @@ -155,12 +181,19 @@ " print('End Date: {}'.format(datetime.fromordinal(result.end_day)))\n", " print('Break Date: {}'.format(datetime.fromordinal(result.break_day)))\n", " print('QA: {}'.format(result.curve_qa))\n", - " print('Norm: {}\\n'.format(np.linalg.norm([result.green.magnitude,\n", + " print('Norm: {}'.format(np.linalg.norm([result.green.magnitude,\n", " result.red.magnitude,\n", " result.nir.magnitude,\n", " result.swir1.magnitude,\n", " result.swir2.magnitude])))\n", " print('Change prob: {}'.format(result.change_probability))\n", + " print('Blue: {}'.format(result.blue.coefficients))\n", + " print('Green: {}'.format(result.green.coefficients))\n", + " print('Red: {}'.format(result.red.coefficients))\n", + " print('NIR: {}'.format(result.nir.coefficients))\n", + " print('SWIR1: {}'.format(result.swir1.coefficients))\n", + " print('SWIR2: {}'.format(result.swir2.coefficients))\n", + " print('Thermal: {}\\n'.format(result.thermal.coefficients))\n", " \n", " days = np.arange(result.start_day, result.end_day + 1)\n", " prediction_dates.append(days)\n", From 5ac586a8683edda021f63bad8c1971b94c10fea5 Mon Sep 17 00:00:00 2001 From: klsmith-usgs Date: Mon, 28 Aug 2017 10:30:34 -0500 Subject: [PATCH 38/45] Fix what bands get used for Tmask. There was a mismatch before related to the variogram. --- ccd/models/tmask.py | 3 ++- ccd/parameters.yaml | 9 +++++---- ccd/procedures.py | 2 +- 3 files changed, 8 insertions(+), 6 deletions(-) diff --git a/ccd/models/tmask.py b/ccd/models/tmask.py index a359d8f..bc7fc88 100644 --- a/ccd/models/tmask.py +++ b/ccd/models/tmask.py @@ -37,7 +37,7 @@ def tmask(dates, observations, variogram, bands, t_const, avg_days_yr): observations: spectral values, assumed to be shaped as (n-bands, n-moments) bands: list of band indices used for outlier detection, by default - bands 2 and 5. + it's the green and SWIR1 bands. t_const: constant used to scale a variogram value for thresholding on whether a value is an outlier or not @@ -46,6 +46,7 @@ def tmask(dates, observations, variogram, bands, t_const, avg_days_yr): # variogram = calculate_variogram(observations) # Time and expected values using a four-part matrix of coefficients. # regression = lm.LinearRegression() + # TODO this needs to be configurable. regression = robust_fit.RLM(maxiter=5) tmask_matrix = tmask_coefficient_matrix(dates, avg_days_yr) diff --git a/ccd/parameters.yaml b/ccd/parameters.yaml index d121920..15a15ca 100644 --- a/ccd/parameters.yaml +++ b/ccd/parameters.yaml @@ -28,7 +28,7 @@ SWIR2_IDX: 5 THERMAL_IDX: 6 QA_IDX: 7 -# Spectral bands that are utilized for detecting change +# Spectral bands that are utilized for detecting change. 0 based array notation. DETECTION_BANDS: - 1 - 2 @@ -36,10 +36,11 @@ DETECTION_BANDS: - 4 - 5 -# Spectral bands that are utilized for Tmask filtering +# Spectral bands that are utilized for Tmask filtering. 0 based array notation. +# This is in relation to the DETECTION_BANDS selected. TMASK_BANDS: - - 1 - - 4 + - 0 + - 3 ############################ # Representative values in the QA band diff --git a/ccd/procedures.py b/ccd/procedures.py index 2520326..ac5590b 100644 --- a/ccd/procedures.py +++ b/ccd/procedures.py @@ -396,7 +396,7 @@ def initialize(dates, observations, fitter_fn, model_window, processing_mask, # Count outliers in the window, if there are too many outliers then # try again. tmask_outliers = tmask.tmask(period[model_window], - spectral_obs[:, model_window], + spectral_obs[detection_bands][:, model_window], variogram, tmask_bands, tmask_scale, avg_days_yr) From c7579af6bb50ea79b78dce6b83721012200901a4 Mon Sep 17 00:00:00 2001 From: clay austin Date: Mon, 28 Aug 2017 12:44:13 -0500 Subject: [PATCH 39/45] small organizational and cleanup changes --- ccd/models/lasso.pyx | 4 - ccd/procedures.c | 4093 +++++++++++++++++++++++------------------- ccd/procedures.pyx | 8 +- setup.py | 10 +- 4 files changed, 2257 insertions(+), 1858 deletions(-) diff --git a/ccd/models/lasso.pyx b/ccd/models/lasso.pyx index d268749..73779bd 100644 --- a/ccd/models/lasso.pyx +++ b/ccd/models/lasso.pyx @@ -67,12 +67,8 @@ cpdef fitted_model(np.ndarray[LTYPE_t, ndim=1] dates, Example: fitted_model(dates, obs).predict(...) """ - #print("*** spectra_obs: {} {}".format(spectra_obs.ndim, spectra_obs.dtype)) coef_matrix = coefficient_matrix(dates, avg_days_yr, num_coefficients) model = lm.fit(coef_matrix, spectra_obs) - #model = ElasticNet().fit(coef_matrix, spectra_obs) - #lasso = linear_model.Lasso(max_iter=max_iter) - #model = lasso.fit(coef_matrix, spectra_obs) predictions = model.predict(coef_matrix) rmse, residuals = calc_rmse(spectra_obs, predictions) diff --git a/ccd/procedures.c b/ccd/procedures.c index 17e3787..f797f87 100644 --- a/ccd/procedures.c +++ b/ccd/procedures.c @@ -1,4 +1,4 @@ -/* Generated by Cython 0.25.2 */ +/* Generated by Cython 0.26 */ /* BEGIN: Cython Metadata { @@ -9,6 +9,10 @@ ], "include_dirs": [ "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include" + ], + "name": "ccd.procedures", + "sources": [ + "ccd/procedures.pyx" ] }, "module_name": "ccd.procedures" @@ -22,7 +26,7 @@ END: Cython Metadata */ #elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) #error Cython requires Python 2.6+ or Python 3.2+. #else -#define CYTHON_ABI "0_25_2" +#define CYTHON_ABI "0_26" #include #ifndef offsetof #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) @@ -44,6 +48,7 @@ END: Cython Metadata */ #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif +#define __PYX_COMMA , #ifndef HAVE_LONG_LONG #if PY_VERSION_HEX >= 0x03030000 || (PY_MAJOR_VERSION == 2 && PY_VERSION_HEX >= 0x02070000) #define HAVE_LONG_LONG @@ -196,16 +201,20 @@ END: Cython Metadata */ #ifndef Py_TPFLAGS_HAVE_FINALIZE #define Py_TPFLAGS_HAVE_FINALIZE 0 #endif -#ifndef METH_FASTCALL - #define METH_FASTCALL 0x80 - typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, - Py_ssize_t nargs, PyObject *kwnames); +#if PY_VERSION_HEX < 0x030700A0 || !defined(METH_FASTCALL) + #ifndef METH_FASTCALL + #define METH_FASTCALL 0x80 + #endif + typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, Py_ssize_t nargs); + typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject **args, + Py_ssize_t nargs, PyObject *kwnames); #else #define __Pyx_PyCFunctionFast _PyCFunctionFast + #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords #endif #if CYTHON_FAST_PYCCALL #define __Pyx_PyFastCFunction_Check(func)\ - ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST))))) + ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))))) #else #define __Pyx_PyFastCFunction_Check(func) 0 #endif @@ -332,6 +341,12 @@ END: Cython Metadata */ #else #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) #endif +#ifndef __has_attribute + #define __has_attribute(x) 0 +#endif +#ifndef __has_cpp_attribute + #define __has_cpp_attribute(x) 0 +#endif #if CYTHON_USE_ASYNC_SLOTS #if PY_VERSION_HEX >= 0x030500B1 #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods @@ -386,6 +401,35 @@ END: Cython Metadata */ # endif #endif #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) +#ifdef _MSC_VER + #ifndef _MSC_STDINT_H_ + #if _MSC_VER < 1300 + typedef unsigned char uint8_t; + typedef unsigned int uint32_t; + #else + typedef unsigned __int8 uint8_t; + typedef unsigned __int32 uint32_t; + #endif + #endif +#else + #include +#endif +#ifndef CYTHON_FALLTHROUGH + #ifdef __cplusplus + #if __has_cpp_attribute(fallthrough) + #define CYTHON_FALLTHROUGH [[fallthrough]] + #elif __has_cpp_attribute(clang::fallthrough) + #define CYTHON_FALLTHROUGH [[clang::fallthrough]] + #endif + #endif + #ifndef CYTHON_FALLTHROUGH + #if __has_attribute(fallthrough) || (defined(__GNUC__) && defined(__attribute__)) + #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) + #else + #define CYTHON_FALLTHROUGH + #endif + #endif +#endif #ifndef CYTHON_INLINE #if defined(__clang__) @@ -494,8 +538,8 @@ typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* enc #else #define __Pyx_sst_abs(value) ((value<0) ? -value : value) #endif -static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); -static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) #define __Pyx_PyBytes_FromString PyBytes_FromString @@ -508,8 +552,11 @@ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize #endif -#define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) @@ -631,10 +678,12 @@ static int __Pyx_init_sys_getdefaultencoding_params(void) { #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ */ +static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } static PyObject *__pyx_m; static PyObject *__pyx_d; static PyObject *__pyx_b; +static PyObject *__pyx_cython_runtime; static PyObject *__pyx_empty_tuple; static PyObject *__pyx_empty_bytes; static PyObject *__pyx_empty_unicode; @@ -1287,7 +1336,7 @@ static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ #else #define __Pyx_TraceDeclarations #define __Pyx_TraceFrameInit(codeobj) - #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if (1); else goto_error; + #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if ((1)); else goto_error; #define __Pyx_TraceException() #define __Pyx_TraceReturn(result, nogil) #endif @@ -1345,7 +1394,7 @@ static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ } #endif #else - #define __Pyx_TraceLine(lineno, nogil, goto_error) if (1); else goto_error; + #define __Pyx_TraceLine(lineno, nogil, goto_error) if ((1)); else goto_error; #endif /* GetModuleGlobalName.proto */ @@ -1436,7 +1485,7 @@ static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info); static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts); static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, __Pyx_BufFmt_StackElem* stack, - __Pyx_TypeInfo* type); // PROTO + __Pyx_TypeInfo* type); /* DictGetItem.proto */ #if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY @@ -1459,15 +1508,21 @@ static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) #endif -/* ExtTypeTest.proto */ -static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); - /* RaiseTooManyValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); /* RaiseNeedMoreValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); +/* IterFinish.proto */ +static CYTHON_INLINE int __Pyx_IterFinish(void); + +/* UnpackItemEndCheck.proto */ +static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); + +/* ExtTypeTest.proto */ +static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); + /* RaiseNoneIterError.proto */ static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); @@ -1570,6 +1625,9 @@ static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tsta #define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err) #endif +/* CLineInTraceback.proto */ +static int __Pyx_CLineForTraceback(int c_line); + /* CodeObjectCache.proto */ typedef struct { PyCodeObject* code_object; @@ -1857,7 +1915,6 @@ static PyArrayObject *(*__pyx_f_3ccd_6models_5tmask_tmask)(PyArrayObject *, PyAr /* Module declarations from 'ccd.procedures' */ static PyObject *__pyx_f_3ccd_10procedures_standard_procedure(PyArrayObject *, PyArrayObject *, PyObject *, PyArrayObject *, PyObject *, int __pyx_skip_dispatch); /*proto*/ -static PyObject *__pyx_f_3ccd_10procedures_initialize(PyArrayObject *, PyArrayObject *, PyObject *, PyObject *, PyArrayObject *, PyArrayObject *, PyObject *, PyObject *); /*proto*/ static PyObject *__pyx_f_3ccd_10procedures_lookforward(PyArrayObject *, PyArrayObject *, PyObject *, PyObject *, PyArrayObject *, PyArrayObject *, PyObject *, PyObject *); /*proto*/ static PyObject *__pyx_f_3ccd_10procedures_lookback(PyArrayObject *, PyArrayObject *, PyObject *, PyObject *, __pyx_t_3ccd_10procedures_ITYPE_t, PyArrayObject *, PyArrayObject *, PyObject *); /*proto*/ static PyObject *__pyx_f_3ccd_10procedures_catch(PyArrayObject *, PyArrayObject *, PyObject *, PyArrayObject *, PyObject *, __pyx_t_3ccd_10procedures_ITYPE_t, PyObject *, PyObject *); /*proto*/ @@ -1931,13 +1988,16 @@ static const char __pyx_k_Initial_s[] = "Initial %s"; static const char __pyx_k_MEOW_SIZE[] = "MEOW_SIZE"; static const char __pyx_k_PEEK_SIZE[] = "PEEK_SIZE"; static const char __pyx_k_break_day[] = "break_day"; +static const char __pyx_k_day_delta[] = "day_delta"; static const char __pyx_k_fitter_fn[] = "fitter_fn"; static const char __pyx_k_getLogger[] = "getLogger"; static const char __pyx_k_meow_size[] = "meow_size"; static const char __pyx_k_start_day[] = "start_day"; +static const char __pyx_k_variogram[] = "variogram"; static const char __pyx_k_ValueError[] = "ValueError"; static const char __pyx_k_ccd_change[] = "ccd.change"; static const char __pyx_k_ccd_models[] = "ccd.models"; +static const char __pyx_k_initialize[] = "initialize"; static const char __pyx_k_magnitudes[] = "magnitudes"; static const char __pyx_k_AVG_DAYS_YR[] = "AVG_DAYS_YR"; static const char __pyx_k_INSUF_CLEAR[] = "INSUF_CLEAR"; @@ -1949,13 +2009,19 @@ static const char __pyx_k_enough_snow[] = "enough_snow"; static const char __pyx_k_enough_time[] = "enough_time"; static const char __pyx_k_proc_params[] = "proc_params"; static const char __pyx_k_snow_thresh[] = "snow_thresh"; +static const char __pyx_k_tmask_bands[] = "tmask_bands"; +static const char __pyx_k_tmask_count[] = "tmask_count"; +static const char __pyx_k_tmask_scale[] = "tmask_scale"; static const char __pyx_k_PERSIST_SNOW[] = "PERSIST_SNOW"; static const char __pyx_k_RuntimeError[] = "RuntimeError"; static const char __pyx_k_clear_thresh[] = "clear_thresh"; static const char __pyx_k_enough_clear[] = "enough_clear"; static const char __pyx_k_fit_max_iter[] = "fit_max_iter"; +static const char __pyx_k_model_window[] = "model_window"; static const char __pyx_k_observations[] = "observations"; static const char __pyx_k_spectral_obs[] = "spectral_obs"; +static const char __pyx_k_tmask_period[] = "tmask_period"; +static const char __pyx_k_change_thresh[] = "change_thresh"; static const char __pyx_k_detect_change[] = "detect_change"; static const char __pyx_k_fit_procedure[] = "fit_procedure"; static const char __pyx_k_fitted_models[] = "fitted_models"; @@ -1968,10 +2034,12 @@ static const char __pyx_k_detect_outlier[] = "detect_outlier"; static const char __pyx_k_enough_samples[] = "enough_samples"; static const char __pyx_k_euclidean_norm[] = "euclidean_norm"; static const char __pyx_k_qa_enough_snow[] = "qa_enough_snow"; +static const char __pyx_k_tmask_outliers[] = "tmask_outliers"; static const char __pyx_k_COEFFICIENT_MAX[] = "COEFFICIENT_MAX"; static const char __pyx_k_COEFFICIENT_MID[] = "COEFFICIENT_MID"; static const char __pyx_k_COEFFICIENT_MIN[] = "COEFFICIENT_MIN"; static const char __pyx_k_DETECTION_BANDS[] = "DETECTION_BANDS"; +static const char __pyx_k_detection_bands[] = "detection_bands"; static const char __pyx_k_processing_mask[] = "processing_mask"; static const char __pyx_k_qa_enough_clear[] = "qa_enough_clear"; static const char __pyx_k_CHANGE_THRESHOLD[] = "CHANGE_THRESHOLD"; @@ -1985,7 +2053,9 @@ static const char __pyx_k_observation_count[] = "observation_count"; static const char __pyx_k_SNOW_PCT_THRESHOLD[] = "SNOW_PCT_THRESHOLD"; static const char __pyx_k_Variogram_values_s[] = "Variogram values: %s"; static const char __pyx_k_adjusted_variogram[] = "adjusted_variogram"; +static const char __pyx_k_ccd_procedures_pyx[] = "ccd/procedures.pyx"; static const char __pyx_k_change_probability[] = "change_probability"; +static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; static const char __pyx_k_standard_procedure[] = "standard_procedure"; static const char __pyx_k_CLEAR_PCT_THRESHOLD[] = "CLEAR_PCT_THRESHOLD"; static const char __pyx_k_Extend_change_model[] = "Extend change model"; @@ -2018,7 +2088,6 @@ static const char __pyx_k_Initialize_for_change_model_s[] = "Initialize for chan static const char __pyx_k_Previous_break_s_model_window_s[] = "Previous break: %s model window: %s"; static const char __pyx_k_Processing_mask_initial_count_s[] = "Processing mask initial count: %s"; static const char __pyx_k_Retrain_models_model_span_s_fit[] = "Retrain models, model_span: %s fit_span: %s"; -static const char __pyx_k_home_caustin_workspace_lcmap_py[] = "/home/caustin/workspace/lcmap-pyccd/ccd/procedures.pyx"; static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import"; static const char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; static const char __pyx_k_Considering_index_s_using_peek_w[] = "Considering index: %s using peek window: %s"; @@ -2107,16 +2176,21 @@ static PyObject *__pyx_n_s_ccd_change; static PyObject *__pyx_n_s_ccd_math_utils; static PyObject *__pyx_n_s_ccd_models; static PyObject *__pyx_n_s_ccd_procedures; +static PyObject *__pyx_kp_s_ccd_procedures_pyx; static PyObject *__pyx_kp_s_change_detection_complete; static PyObject *__pyx_n_s_change_magnitude; static PyObject *__pyx_n_s_change_probability; +static PyObject *__pyx_n_s_change_thresh; static PyObject *__pyx_n_s_clear; static PyObject *__pyx_n_s_clear_thresh; +static PyObject *__pyx_n_s_cline_in_traceback; static PyObject *__pyx_n_s_curve_qa; static PyObject *__pyx_n_s_dates; +static PyObject *__pyx_n_s_day_delta; static PyObject *__pyx_n_s_debug; static PyObject *__pyx_n_s_detect_change; static PyObject *__pyx_n_s_detect_outlier; +static PyObject *__pyx_n_s_detection_bands; static PyObject *__pyx_n_s_determine_num_coefs; static PyObject *__pyx_n_s_end_day; static PyObject *__pyx_n_s_enough_clear; @@ -2133,8 +2207,8 @@ static PyObject *__pyx_n_s_fitter_fn; static PyObject *__pyx_n_s_format; static PyObject *__pyx_n_s_func; static PyObject *__pyx_n_s_getLogger; -static PyObject *__pyx_kp_s_home_caustin_workspace_lcmap_py; static PyObject *__pyx_n_s_import; +static PyObject *__pyx_n_s_initialize; static PyObject *__pyx_n_s_insufficient_clear_filter; static PyObject *__pyx_n_s_insufficient_clear_procedure; static PyObject *__pyx_n_s_kelvin_to_celsius; @@ -2148,6 +2222,7 @@ static PyObject *__pyx_n_s_main; static PyObject *__pyx_n_s_max_iter; static PyObject *__pyx_n_s_median; static PyObject *__pyx_n_s_meow_size; +static PyObject *__pyx_n_s_model_window; static PyObject *__pyx_n_s_models; static PyObject *__pyx_n_s_name; static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; @@ -2193,14 +2268,21 @@ static PyObject *__pyx_n_s_start_day; static PyObject *__pyx_n_s_stop; static PyObject *__pyx_n_s_sum; static PyObject *__pyx_n_s_test; +static PyObject *__pyx_n_s_tmask_bands; +static PyObject *__pyx_n_s_tmask_count; +static PyObject *__pyx_n_s_tmask_outliers; +static PyObject *__pyx_n_s_tmask_period; +static PyObject *__pyx_n_s_tmask_scale; static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd; static PyObject *__pyx_n_s_update_processing_mask; +static PyObject *__pyx_n_s_variogram; static PyObject *__pyx_n_s_water; static PyObject *__pyx_n_s_zeros; static PyObject *__pyx_pf_3ccd_10procedures_fit_procedure(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_quality, PyObject *__pyx_v_proc_params); /* proto */ static PyObject *__pyx_pf_3ccd_10procedures_2permanent_snow_procedure(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_dates, PyObject *__pyx_v_observations, PyObject *__pyx_v_fitter_fn, PyObject *__pyx_v_quality, PyObject *__pyx_v_proc_params); /* proto */ static PyObject *__pyx_pf_3ccd_10procedures_4insufficient_clear_procedure(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_dates, PyObject *__pyx_v_observations, PyObject *__pyx_v_fitter_fn, PyObject *__pyx_v_quality, PyObject *__pyx_v_proc_params); /* proto */ static PyObject *__pyx_pf_3ccd_10procedures_6standard_procedure(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_dates, PyArrayObject *__pyx_v_observations, PyObject *__pyx_v_fitter_fn, PyArrayObject *__pyx_v_quality, PyObject *__pyx_v_proc_params); /* proto */ +static PyObject *__pyx_pf_3ccd_10procedures_8initialize(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_dates, PyObject *__pyx_v_observations, PyObject *__pyx_v_fitter_fn, PyObject *__pyx_v_model_window, PyObject *__pyx_v_processing_mask, PyObject *__pyx_v_variogram, PyObject *__pyx_v_proc_params, PyObject *__pyx_v_lasso); /* proto */ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ static PyObject *__pyx_float_1_33; @@ -2217,21 +2299,20 @@ static PyObject *__pyx_slice__6; static PyObject *__pyx_tuple__7; static PyObject *__pyx_tuple__8; static PyObject *__pyx_tuple__9; -static PyObject *__pyx_slice__10; static PyObject *__pyx_slice__11; -static PyObject *__pyx_slice__14; -static PyObject *__pyx_slice__16; -static PyObject *__pyx_slice__18; +static PyObject *__pyx_slice__12; +static PyObject *__pyx_slice__15; +static PyObject *__pyx_slice__17; static PyObject *__pyx_slice__19; static PyObject *__pyx_slice__20; static PyObject *__pyx_slice__21; static PyObject *__pyx_slice__22; static PyObject *__pyx_slice__23; -static PyObject *__pyx_tuple__12; +static PyObject *__pyx_slice__24; static PyObject *__pyx_tuple__13; -static PyObject *__pyx_tuple__15; -static PyObject *__pyx_tuple__17; -static PyObject *__pyx_tuple__24; +static PyObject *__pyx_tuple__14; +static PyObject *__pyx_tuple__16; +static PyObject *__pyx_tuple__18; static PyObject *__pyx_tuple__25; static PyObject *__pyx_tuple__26; static PyObject *__pyx_tuple__27; @@ -2244,8 +2325,11 @@ static PyObject *__pyx_tuple__33; static PyObject *__pyx_tuple__34; static PyObject *__pyx_tuple__35; static PyObject *__pyx_tuple__36; +static PyObject *__pyx_tuple__37; +static PyObject *__pyx_tuple__38; static PyObject *__pyx_codeobj__2; static PyObject *__pyx_codeobj__4; +static PyObject *__pyx_codeobj__10; /* "ccd/procedures.pyx":61 * @@ -2273,7 +2357,9 @@ static PyObject *__pyx_pw_3ccd_10procedures_1fit_procedure(PyObject *__pyx_self, const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args); switch (pos_args) { case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); + CYTHON_FALLTHROUGH; case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); + CYTHON_FALLTHROUGH; case 0: break; default: goto __pyx_L5_argtuple_error; } @@ -2282,6 +2368,7 @@ static PyObject *__pyx_pw_3ccd_10procedures_1fit_procedure(PyObject *__pyx_self, case 0: if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_quality)) != 0)) kw_args--; else goto __pyx_L5_argtuple_error; + CYTHON_FALLTHROUGH; case 1: if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_proc_params)) != 0)) kw_args--; else { @@ -2747,10 +2834,15 @@ static PyObject *__pyx_pw_3ccd_10procedures_3permanent_snow_procedure(PyObject * const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args); switch (pos_args) { case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4); + CYTHON_FALLTHROUGH; case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); + CYTHON_FALLTHROUGH; case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); + CYTHON_FALLTHROUGH; case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); + CYTHON_FALLTHROUGH; case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); + CYTHON_FALLTHROUGH; case 0: break; default: goto __pyx_L5_argtuple_error; } @@ -2759,21 +2851,25 @@ static PyObject *__pyx_pw_3ccd_10procedures_3permanent_snow_procedure(PyObject * case 0: if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_dates)) != 0)) kw_args--; else goto __pyx_L5_argtuple_error; + CYTHON_FALLTHROUGH; case 1: if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_observations)) != 0)) kw_args--; else { __Pyx_RaiseArgtupleInvalid("permanent_snow_procedure", 1, 5, 5, 1); __PYX_ERR(0, 96, __pyx_L3_error) } + CYTHON_FALLTHROUGH; case 2: if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_fitter_fn)) != 0)) kw_args--; else { __Pyx_RaiseArgtupleInvalid("permanent_snow_procedure", 1, 5, 5, 2); __PYX_ERR(0, 96, __pyx_L3_error) } + CYTHON_FALLTHROUGH; case 3: if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_quality)) != 0)) kw_args--; else { __Pyx_RaiseArgtupleInvalid("permanent_snow_procedure", 1, 5, 5, 3); __PYX_ERR(0, 96, __pyx_L3_error) } + CYTHON_FALLTHROUGH; case 4: if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_proc_params)) != 0)) kw_args--; else { @@ -3530,10 +3626,15 @@ static PyObject *__pyx_pw_3ccd_10procedures_5insufficient_clear_procedure(PyObje const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args); switch (pos_args) { case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4); + CYTHON_FALLTHROUGH; case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); + CYTHON_FALLTHROUGH; case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); + CYTHON_FALLTHROUGH; case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); + CYTHON_FALLTHROUGH; case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); + CYTHON_FALLTHROUGH; case 0: break; default: goto __pyx_L5_argtuple_error; } @@ -3542,21 +3643,25 @@ static PyObject *__pyx_pw_3ccd_10procedures_5insufficient_clear_procedure(PyObje case 0: if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_dates)) != 0)) kw_args--; else goto __pyx_L5_argtuple_error; + CYTHON_FALLTHROUGH; case 1: if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_observations)) != 0)) kw_args--; else { __Pyx_RaiseArgtupleInvalid("insufficient_clear_procedure", 1, 5, 5, 1); __PYX_ERR(0, 157, __pyx_L3_error) } + CYTHON_FALLTHROUGH; case 2: if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_fitter_fn)) != 0)) kw_args--; else { __Pyx_RaiseArgtupleInvalid("insufficient_clear_procedure", 1, 5, 5, 2); __PYX_ERR(0, 157, __pyx_L3_error) } + CYTHON_FALLTHROUGH; case 3: if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_quality)) != 0)) kw_args--; else { __Pyx_RaiseArgtupleInvalid("insufficient_clear_procedure", 1, 5, 5, 3); __PYX_ERR(0, 157, __pyx_L3_error) } + CYTHON_FALLTHROUGH; case 4: if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_proc_params)) != 0)) kw_args--; else { @@ -4284,9 +4389,9 @@ static PyObject *__pyx_pf_3ccd_10procedures_4insufficient_clear_procedure(CYTHON return __pyx_r; } -/* "ccd/procedures.pyx":219 +/* "ccd/procedures.pyx":218 + * * - * #cpdef standard_procedure(dates, observations, fitter_fn, quality, proc_params): * cpdef tuple standard_procedure(np.ndarray[LTYPE_t, ndim=1] dates, # <<<<<<<<<<<<<< * np.ndarray[STYPE_t, ndim=2] observations, * object fitter_fn, @@ -4294,13 +4399,13 @@ static PyObject *__pyx_pf_3ccd_10procedures_4insufficient_clear_procedure(CYTHON static PyObject *__pyx_pw_3ccd_10procedures_7standard_procedure(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ static PyObject *__pyx_f_3ccd_10procedures_standard_procedure(PyArrayObject *__pyx_v_dates, PyArrayObject *__pyx_v_observations, PyObject *__pyx_v_fitter_fn, PyArrayObject *__pyx_v_quality, PyObject *__pyx_v_proc_params, CYTHON_UNUSED int __pyx_skip_dispatch) { + PyObject *__pyx_v_Lasso = NULL; + PyObject *__pyx_v_lasso = NULL; PyObject *__pyx_v_meow_size = NULL; PyObject *__pyx_v_peek_size = NULL; PyObject *__pyx_v_thermal_idx = NULL; PyObject *__pyx_v_curve_qa = NULL; PyObject *__pyx_v_detection_bands = NULL; - PyObject *__pyx_v_Lasso = NULL; - PyObject *__pyx_v_lasso = NULL; PyObject *__pyx_v_processing_mask = NULL; PyObject *__pyx_v_obs_count = NULL; PyObject *__pyx_v_results = NULL; @@ -4331,12 +4436,13 @@ static PyObject *__pyx_f_3ccd_10procedures_standard_procedure(PyArrayObject *__p int __pyx_t_7; PyObject *__pyx_t_8 = NULL; Py_ssize_t __pyx_t_9; - int __pyx_t_10; - __pyx_t_3ccd_10procedures_ITYPE_t __pyx_t_11; - int __pyx_t_12; - PyObject *__pyx_t_13 = NULL; + PyObject *(*__pyx_t_10)(PyObject *); + int __pyx_t_11; + __pyx_t_3ccd_10procedures_ITYPE_t __pyx_t_12; + int __pyx_t_13; + PyObject *__pyx_t_14 = NULL; __Pyx_RefNannySetupContext("standard_procedure", 0); - __Pyx_TraceCall("standard_procedure", __pyx_f[0], 219, 0, __PYX_ERR(0, 219, __pyx_L1_error)); + __Pyx_TraceCall("standard_procedure", __pyx_f[0], 218, 0, __PYX_ERR(0, 218, __pyx_L1_error)); __pyx_pybuffer_dates.pybuffer.buf = NULL; __pyx_pybuffer_dates.refcount = 0; __pyx_pybuffernd_dates.data = NULL; @@ -4351,22 +4457,67 @@ static PyObject *__pyx_f_3ccd_10procedures_standard_procedure(PyArrayObject *__p __pyx_pybuffernd_quality.rcbuffer = &__pyx_pybuffer_quality; { __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_dates.rcbuffer->pybuffer, (PyObject*)__pyx_v_dates, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_LTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 1, 0, __pyx_stack) == -1)) __PYX_ERR(0, 219, __pyx_L1_error) + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_dates.rcbuffer->pybuffer, (PyObject*)__pyx_v_dates, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_LTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 1, 0, __pyx_stack) == -1)) __PYX_ERR(0, 218, __pyx_L1_error) } __pyx_pybuffernd_dates.diminfo[0].strides = __pyx_pybuffernd_dates.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_dates.diminfo[0].shape = __pyx_pybuffernd_dates.rcbuffer->pybuffer.shape[0]; { __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_STYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 219, __pyx_L1_error) + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_STYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 218, __pyx_L1_error) } __pyx_pybuffernd_observations.diminfo[0].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_observations.diminfo[0].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_observations.diminfo[1].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_observations.diminfo[1].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[1]; { __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_quality.rcbuffer->pybuffer, (PyObject*)__pyx_v_quality, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_LTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 1, 0, __pyx_stack) == -1)) __PYX_ERR(0, 219, __pyx_L1_error) + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_quality.rcbuffer->pybuffer, (PyObject*)__pyx_v_quality, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_LTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 1, 0, __pyx_stack) == -1)) __PYX_ERR(0, 218, __pyx_L1_error) } __pyx_pybuffernd_quality.diminfo[0].strides = __pyx_pybuffernd_quality.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_quality.diminfo[0].shape = __pyx_pybuffernd_quality.rcbuffer->pybuffer.shape[0]; - /* "ccd/procedures.pyx":259 + /* "ccd/procedures.pyx":257 + * for model fitting + * """ + * from sklearn.linear_model import Lasso # <<<<<<<<<<<<<< + * lasso = Lasso(max_iter=proc_params['LASSO_MAX_ITER']) + * + */ + __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 257, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + __Pyx_INCREF(__pyx_n_s_Lasso); + __Pyx_GIVEREF(__pyx_n_s_Lasso); + PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_Lasso); + __pyx_t_2 = __Pyx_Import(__pyx_n_s_sklearn_linear_model, __pyx_t_1, -1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 257, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_2); + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_2, __pyx_n_s_Lasso); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 257, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + __Pyx_INCREF(__pyx_t_1); + __pyx_v_Lasso = __pyx_t_1; + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; + + /* "ccd/procedures.pyx":258 * """ + * from sklearn.linear_model import Lasso + * lasso = Lasso(max_iter=proc_params['LASSO_MAX_ITER']) # <<<<<<<<<<<<<< + * + * # TODO do this better + */ + __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 258, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_2); + if (unlikely(__pyx_v_proc_params == Py_None)) { + PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable"); + __PYX_ERR(0, 258, __pyx_L1_error) + } + __pyx_t_1 = __Pyx_PyDict_GetItem(__pyx_v_proc_params, __pyx_n_s_LASSO_MAX_ITER); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 258, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + if (PyDict_SetItem(__pyx_t_2, __pyx_n_s_max_iter, __pyx_t_1) < 0) __PYX_ERR(0, 258, __pyx_L1_error) + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + __pyx_t_1 = __Pyx_PyObject_Call(__pyx_v_Lasso, __pyx_empty_tuple, __pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 258, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; + __pyx_v_lasso = __pyx_t_1; + __pyx_t_1 = 0; + + /* "ccd/procedures.pyx":261 + * * # TODO do this better * meow_size = proc_params['MEOW_SIZE'] # <<<<<<<<<<<<<< * peek_size = proc_params['PEEK_SIZE'] @@ -4374,14 +4525,14 @@ static PyObject *__pyx_f_3ccd_10procedures_standard_procedure(PyArrayObject *__p */ if (unlikely(__pyx_v_proc_params == Py_None)) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable"); - __PYX_ERR(0, 259, __pyx_L1_error) + __PYX_ERR(0, 261, __pyx_L1_error) } - __pyx_t_1 = __Pyx_PyDict_GetItem(__pyx_v_proc_params, __pyx_n_s_MEOW_SIZE); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 259, __pyx_L1_error) + __pyx_t_1 = __Pyx_PyDict_GetItem(__pyx_v_proc_params, __pyx_n_s_MEOW_SIZE); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 261, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); __pyx_v_meow_size = __pyx_t_1; __pyx_t_1 = 0; - /* "ccd/procedures.pyx":260 + /* "ccd/procedures.pyx":262 * # TODO do this better * meow_size = proc_params['MEOW_SIZE'] * peek_size = proc_params['PEEK_SIZE'] # <<<<<<<<<<<<<< @@ -4390,14 +4541,14 @@ static PyObject *__pyx_f_3ccd_10procedures_standard_procedure(PyArrayObject *__p */ if (unlikely(__pyx_v_proc_params == Py_None)) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable"); - __PYX_ERR(0, 260, __pyx_L1_error) + __PYX_ERR(0, 262, __pyx_L1_error) } - __pyx_t_1 = __Pyx_PyDict_GetItem(__pyx_v_proc_params, __pyx_n_s_PEEK_SIZE); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 260, __pyx_L1_error) + __pyx_t_1 = __Pyx_PyDict_GetItem(__pyx_v_proc_params, __pyx_n_s_PEEK_SIZE); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 262, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); __pyx_v_peek_size = __pyx_t_1; __pyx_t_1 = 0; - /* "ccd/procedures.pyx":261 + /* "ccd/procedures.pyx":263 * meow_size = proc_params['MEOW_SIZE'] * peek_size = proc_params['PEEK_SIZE'] * thermal_idx = proc_params['THERMAL_IDX'] # <<<<<<<<<<<<<< @@ -4406,14 +4557,14 @@ static PyObject *__pyx_f_3ccd_10procedures_standard_procedure(PyArrayObject *__p */ if (unlikely(__pyx_v_proc_params == Py_None)) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable"); - __PYX_ERR(0, 261, __pyx_L1_error) + __PYX_ERR(0, 263, __pyx_L1_error) } - __pyx_t_1 = __Pyx_PyDict_GetItem(__pyx_v_proc_params, __pyx_n_s_THERMAL_IDX); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 261, __pyx_L1_error) + __pyx_t_1 = __Pyx_PyDict_GetItem(__pyx_v_proc_params, __pyx_n_s_THERMAL_IDX); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 263, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); __pyx_v_thermal_idx = __pyx_t_1; __pyx_t_1 = 0; - /* "ccd/procedures.pyx":262 + /* "ccd/procedures.pyx":264 * peek_size = proc_params['PEEK_SIZE'] * thermal_idx = proc_params['THERMAL_IDX'] * curve_qa = proc_params['CURVE_QA'] # <<<<<<<<<<<<<< @@ -4422,84 +4573,39 @@ static PyObject *__pyx_f_3ccd_10procedures_standard_procedure(PyArrayObject *__p */ if (unlikely(__pyx_v_proc_params == Py_None)) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable"); 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/* "ccd/procedures.pyx":795 + /* "ccd/procedures.pyx":809 * * * cdef catch(np.ndarray[LTYPE_t, ndim=1] dates, # <<<<<<<<<<<<<< @@ -12493,7 +12768,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P * * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) */ - __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__25, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 218, __pyx_L1_error) + __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__26, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 218, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); __Pyx_Raise(__pyx_t_3, 0, 0, 0); __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; @@ -12549,7 +12824,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P * * info.buf = PyArray_DATA(self) */ - __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__26, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 222, __pyx_L1_error) + __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__27, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 222, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); __Pyx_Raise(__pyx_t_3, 0, 0, 0); __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; @@ -12858,7 +13133,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P * if t == NPY_BYTE: f = "b" * elif t == NPY_UBYTE: f = "B" */ - __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__27, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 259, __pyx_L1_error) + __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__28, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 259, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); __Pyx_Raise(__pyx_t_3, 0, 0, 0); __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; @@ -13290,7 +13565,7 @@ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_s /* function exit code */ goto __pyx_L0; __pyx_L1_error:; - __Pyx_WriteUnraisable("numpy.ndarray.__releasebuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename, 0, 0); + __Pyx_WriteUnraisable("numpy.ndarray.__releasebuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0); __pyx_L0:; __Pyx_TraceReturn(Py_None, 0); __Pyx_RefNannyFinishContext(); @@ -13698,7 +13973,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx * * if ((child.byteorder == c'>' and little_endian) or */ - __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_RuntimeError, __pyx_tuple__28, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 799, __pyx_L1_error) + __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_RuntimeError, __pyx_tuple__29, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 799, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); __Pyx_Raise(__pyx_t_3, 0, 0, 0); __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; @@ -13766,7 +14041,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx * # One could encode it in the format string and have Cython * # complain instead, BUT: < and > in format strings also imply */ - __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__29, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 803, __pyx_L1_error) + __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__30, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 803, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); __Pyx_Raise(__pyx_t_3, 0, 0, 0); __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; @@ -13875,7 +14150,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx * * # Until ticket #99 is fixed, use integers to avoid warnings */ - __pyx_t_4 = __Pyx_PyObject_Call(__pyx_builtin_RuntimeError, __pyx_tuple__30, NULL); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 823, __pyx_L1_error) + __pyx_t_4 = __Pyx_PyObject_Call(__pyx_builtin_RuntimeError, __pyx_tuple__31, NULL); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 823, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_4); __Pyx_Raise(__pyx_t_4, 0, 0, 0); __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; @@ -14401,7 +14676,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a /* function exit code */ goto __pyx_L0; __pyx_L1_error:; - __Pyx_WriteUnraisable("numpy.set_array_base", __pyx_clineno, __pyx_lineno, __pyx_filename, 0, 0); + __Pyx_WriteUnraisable("numpy.set_array_base", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0); __pyx_L0:; __Pyx_TraceReturn(Py_None, 0); __Pyx_RefNannyFinishContext(); @@ -14546,7 +14821,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0; __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0; __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0; - goto __pyx_L10_try_end; + goto __pyx_L8_try_end; __pyx_L3_error:; __Pyx_PyThreadState_assign @@ -14572,7 +14847,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { * * cdef inline int import_umath() except -1: */ - __pyx_t_8 = __Pyx_PyObject_Call(__pyx_builtin_ImportError, __pyx_tuple__31, NULL); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 989, __pyx_L5_except_error) + __pyx_t_8 = __Pyx_PyObject_Call(__pyx_builtin_ImportError, __pyx_tuple__32, NULL); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 989, __pyx_L5_except_error) __Pyx_GOTREF(__pyx_t_8); __Pyx_Raise(__pyx_t_8, 0, 0, 0); __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0; @@ -14594,7 +14869,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) { __Pyx_XGIVEREF(__pyx_t_3); __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3); goto __pyx_L1_error; - __pyx_L10_try_end:; + __pyx_L8_try_end:; } /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":985 @@ -14680,7 +14955,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) { __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0; __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0; __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0; - goto __pyx_L10_try_end; + goto __pyx_L8_try_end; __pyx_L3_error:; __Pyx_PyThreadState_assign @@ -14706,7 +14981,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) { * * cdef inline int import_ufunc() except -1: */ - __pyx_t_8 = __Pyx_PyObject_Call(__pyx_builtin_ImportError, __pyx_tuple__32, NULL); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 995, __pyx_L5_except_error) + __pyx_t_8 = __Pyx_PyObject_Call(__pyx_builtin_ImportError, __pyx_tuple__33, NULL); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 995, __pyx_L5_except_error) __Pyx_GOTREF(__pyx_t_8); __Pyx_Raise(__pyx_t_8, 0, 0, 0); __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0; @@ -14728,7 +15003,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) { __Pyx_XGIVEREF(__pyx_t_3); __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3); goto __pyx_L1_error; - __pyx_L10_try_end:; + __pyx_L8_try_end:; } /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":991 @@ -14814,7 +15089,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) { __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0; __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0; __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0; - goto __pyx_L10_try_end; + goto __pyx_L8_try_end; __pyx_L3_error:; __Pyx_PyThreadState_assign @@ -14837,7 +15112,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) { * except Exception: * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<< */ - __pyx_t_8 = __Pyx_PyObject_Call(__pyx_builtin_ImportError, __pyx_tuple__33, NULL); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1001, __pyx_L5_except_error) + __pyx_t_8 = __Pyx_PyObject_Call(__pyx_builtin_ImportError, __pyx_tuple__34, NULL); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1001, __pyx_L5_except_error) __Pyx_GOTREF(__pyx_t_8); __Pyx_Raise(__pyx_t_8, 0, 0, 0); __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0; @@ -14859,7 +15134,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) { __Pyx_XGIVEREF(__pyx_t_3); __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3); goto __pyx_L1_error; - __pyx_L10_try_end:; + __pyx_L8_try_end:; } /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":997 @@ -14982,16 +15257,21 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_ccd_math_utils, __pyx_k_ccd_math_utils, sizeof(__pyx_k_ccd_math_utils), 0, 0, 1, 1}, {&__pyx_n_s_ccd_models, __pyx_k_ccd_models, sizeof(__pyx_k_ccd_models), 0, 0, 1, 1}, {&__pyx_n_s_ccd_procedures, __pyx_k_ccd_procedures, sizeof(__pyx_k_ccd_procedures), 0, 0, 1, 1}, + {&__pyx_kp_s_ccd_procedures_pyx, __pyx_k_ccd_procedures_pyx, sizeof(__pyx_k_ccd_procedures_pyx), 0, 0, 1, 0}, {&__pyx_kp_s_change_detection_complete, __pyx_k_change_detection_complete, sizeof(__pyx_k_change_detection_complete), 0, 0, 1, 0}, {&__pyx_n_s_change_magnitude, __pyx_k_change_magnitude, sizeof(__pyx_k_change_magnitude), 0, 0, 1, 1}, {&__pyx_n_s_change_probability, __pyx_k_change_probability, sizeof(__pyx_k_change_probability), 0, 0, 1, 1}, + {&__pyx_n_s_change_thresh, __pyx_k_change_thresh, sizeof(__pyx_k_change_thresh), 0, 0, 1, 1}, {&__pyx_n_s_clear, __pyx_k_clear, sizeof(__pyx_k_clear), 0, 0, 1, 1}, {&__pyx_n_s_clear_thresh, __pyx_k_clear_thresh, sizeof(__pyx_k_clear_thresh), 0, 0, 1, 1}, + {&__pyx_n_s_cline_in_traceback, __pyx_k_cline_in_traceback, sizeof(__pyx_k_cline_in_traceback), 0, 0, 1, 1}, {&__pyx_n_s_curve_qa, __pyx_k_curve_qa, sizeof(__pyx_k_curve_qa), 0, 0, 1, 1}, {&__pyx_n_s_dates, __pyx_k_dates, sizeof(__pyx_k_dates), 0, 0, 1, 1}, + {&__pyx_n_s_day_delta, __pyx_k_day_delta, sizeof(__pyx_k_day_delta), 0, 0, 1, 1}, {&__pyx_n_s_debug, __pyx_k_debug, sizeof(__pyx_k_debug), 0, 0, 1, 1}, {&__pyx_n_s_detect_change, __pyx_k_detect_change, sizeof(__pyx_k_detect_change), 0, 0, 1, 1}, {&__pyx_n_s_detect_outlier, __pyx_k_detect_outlier, sizeof(__pyx_k_detect_outlier), 0, 0, 1, 1}, + {&__pyx_n_s_detection_bands, __pyx_k_detection_bands, sizeof(__pyx_k_detection_bands), 0, 0, 1, 1}, {&__pyx_n_s_determine_num_coefs, __pyx_k_determine_num_coefs, sizeof(__pyx_k_determine_num_coefs), 0, 0, 1, 1}, {&__pyx_n_s_end_day, __pyx_k_end_day, sizeof(__pyx_k_end_day), 0, 0, 1, 1}, {&__pyx_n_s_enough_clear, __pyx_k_enough_clear, sizeof(__pyx_k_enough_clear), 0, 0, 1, 1}, @@ -15008,8 +15288,8 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_format, __pyx_k_format, sizeof(__pyx_k_format), 0, 0, 1, 1}, {&__pyx_n_s_func, __pyx_k_func, sizeof(__pyx_k_func), 0, 0, 1, 1}, {&__pyx_n_s_getLogger, __pyx_k_getLogger, sizeof(__pyx_k_getLogger), 0, 0, 1, 1}, - {&__pyx_kp_s_home_caustin_workspace_lcmap_py, __pyx_k_home_caustin_workspace_lcmap_py, sizeof(__pyx_k_home_caustin_workspace_lcmap_py), 0, 0, 1, 0}, {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1}, + {&__pyx_n_s_initialize, __pyx_k_initialize, sizeof(__pyx_k_initialize), 0, 0, 1, 1}, {&__pyx_n_s_insufficient_clear_filter, __pyx_k_insufficient_clear_filter, sizeof(__pyx_k_insufficient_clear_filter), 0, 0, 1, 1}, {&__pyx_n_s_insufficient_clear_procedure, __pyx_k_insufficient_clear_procedure, sizeof(__pyx_k_insufficient_clear_procedure), 0, 0, 1, 1}, {&__pyx_n_s_kelvin_to_celsius, __pyx_k_kelvin_to_celsius, sizeof(__pyx_k_kelvin_to_celsius), 0, 0, 1, 1}, @@ -15023,6 +15303,7 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_max_iter, __pyx_k_max_iter, sizeof(__pyx_k_max_iter), 0, 0, 1, 1}, {&__pyx_n_s_median, __pyx_k_median, sizeof(__pyx_k_median), 0, 0, 1, 1}, {&__pyx_n_s_meow_size, __pyx_k_meow_size, sizeof(__pyx_k_meow_size), 0, 0, 1, 1}, + {&__pyx_n_s_model_window, __pyx_k_model_window, sizeof(__pyx_k_model_window), 0, 0, 1, 1}, {&__pyx_n_s_models, __pyx_k_models, sizeof(__pyx_k_models), 0, 0, 1, 1}, {&__pyx_n_s_name, __pyx_k_name, sizeof(__pyx_k_name), 0, 0, 1, 1}, {&__pyx_kp_u_ndarray_is_not_C_contiguous, __pyx_k_ndarray_is_not_C_contiguous, sizeof(__pyx_k_ndarray_is_not_C_contiguous), 0, 1, 0, 0}, @@ -15068,15 +15349,21 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_stop, __pyx_k_stop, sizeof(__pyx_k_stop), 0, 0, 1, 1}, {&__pyx_n_s_sum, __pyx_k_sum, sizeof(__pyx_k_sum), 0, 0, 1, 1}, {&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1}, + {&__pyx_n_s_tmask_bands, __pyx_k_tmask_bands, sizeof(__pyx_k_tmask_bands), 0, 0, 1, 1}, + {&__pyx_n_s_tmask_count, __pyx_k_tmask_count, sizeof(__pyx_k_tmask_count), 0, 0, 1, 1}, + {&__pyx_n_s_tmask_outliers, __pyx_k_tmask_outliers, sizeof(__pyx_k_tmask_outliers), 0, 0, 1, 1}, + {&__pyx_n_s_tmask_period, __pyx_k_tmask_period, sizeof(__pyx_k_tmask_period), 0, 0, 1, 1}, + {&__pyx_n_s_tmask_scale, __pyx_k_tmask_scale, sizeof(__pyx_k_tmask_scale), 0, 0, 1, 1}, {&__pyx_kp_u_unknown_dtype_code_in_numpy_pxd, __pyx_k_unknown_dtype_code_in_numpy_pxd, sizeof(__pyx_k_unknown_dtype_code_in_numpy_pxd), 0, 1, 0, 0}, {&__pyx_n_s_update_processing_mask, __pyx_k_update_processing_mask, sizeof(__pyx_k_update_processing_mask), 0, 0, 1, 1}, + {&__pyx_n_s_variogram, __pyx_k_variogram, sizeof(__pyx_k_variogram), 0, 0, 1, 1}, {&__pyx_n_s_water, __pyx_k_water, sizeof(__pyx_k_water), 0, 0, 1, 1}, {&__pyx_n_s_zeros, __pyx_k_zeros, sizeof(__pyx_k_zeros), 0, 0, 1, 1}, {0, 0, 0, 0, 0, 0, 0} }; static int __Pyx_InitCachedBuiltins(void) { - 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__pyx_t_4 = 0; + /* "ccd/procedures.pyx":399 + * # dict proc_params, + * # object lasso): + * def initialize(dates, # <<<<<<<<<<<<<< + * observations, + * fitter_fn, + */ + __pyx_t_4 = PyCFunction_NewEx(&__pyx_mdef_3ccd_10procedures_9initialize, NULL, __pyx_n_s_ccd_procedures); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 399, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_4); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_initialize, __pyx_t_4) < 0) __PYX_ERR(0, 399, __pyx_L1_error) + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + /* "ccd/procedures.pyx":1 * # cython: profile=True # <<<<<<<<<<<<<< * """Functions for providing the over-arching methodology. Tying together the @@ -16039,7 +16351,7 @@ PyMODINIT_FUNC PyInit_procedures(void) __Pyx_XDECREF(__pyx_t_6); if (__pyx_m) { if (__pyx_d) { - __Pyx_AddTraceback("init ccd.procedures", __pyx_clineno, __pyx_lineno, __pyx_filename); + __Pyx_AddTraceback("init ccd.procedures", 0, __pyx_lineno, __pyx_filename); } Py_DECREF(__pyx_m); __pyx_m = 0; } else if (!PyErr_Occurred()) { @@ -16456,8 +16768,8 @@ static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_LeaveRecursiveCall(); return result; } -#endif // CPython < 3.6 -#endif // CYTHON_FAST_PYCALL +#endif +#endif /* PyCFunctionFastCall */ #if CYTHON_FAST_PYCCALL @@ -16465,17 +16777,22 @@ static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, P PyCFunctionObject *func = (PyCFunctionObject*)func_obj; PyCFunction meth = PyCFunction_GET_FUNCTION(func); PyObject *self = PyCFunction_GET_SELF(func); + int flags = PyCFunction_GET_FLAGS(func); assert(PyCFunction_Check(func)); - assert(METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST))); + assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))); assert(nargs >= 0); assert(nargs == 0 || args != NULL); /* _PyCFunction_FastCallDict() must not be called with an exception set, because it may clear it (directly or indirectly) and so the caller loses its exception */ assert(!PyErr_Occurred()); - return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL); + if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) { + return (*((__Pyx_PyCFunctionFastWithKeywords)meth)) (self, args, nargs, NULL); + } else { + return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs); + } } -#endif // CYTHON_FAST_PYCCALL +#endif /* PyObjectCall */ #if CYTHON_COMPILING_IN_CPYTHON @@ -16623,11 +16940,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec return __Pyx_PyFunction_FastCall(func, &arg, 1); } #endif -#ifdef __Pyx_CyFunction_USED - if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { -#else if (likely(PyCFunction_Check(func))) { -#endif if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { return __Pyx_PyObject_CallMethO(func, arg); #if CYTHON_FAST_PYCCALL @@ -16650,7 +16963,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec #endif /* GetItemInt */ - static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { + static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { PyObject *r; if (!j) return NULL; r = PyObject_GetItem(o, j); @@ -16661,9 +16974,12 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_ CYTHON_NCP_UNUSED int wraparound, CYTHON_NCP_UNUSED int boundscheck) { #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS - if (wraparound & unlikely(i < 0)) i += PyList_GET_SIZE(o); - if ((!boundscheck) || likely((0 <= i) & (i < PyList_GET_SIZE(o)))) { - PyObject *r = PyList_GET_ITEM(o, i); + Py_ssize_t wrapped_i = i; + if (wraparound & unlikely(i < 0)) { + wrapped_i += PyList_GET_SIZE(o); + } + if ((!boundscheck) || likely((0 <= wrapped_i) & (wrapped_i < PyList_GET_SIZE(o)))) { + PyObject *r = PyList_GET_ITEM(o, wrapped_i); Py_INCREF(r); return r; } @@ -16676,9 +16992,12 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize CYTHON_NCP_UNUSED int wraparound, CYTHON_NCP_UNUSED int boundscheck) { #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS - if (wraparound & unlikely(i < 0)) i += PyTuple_GET_SIZE(o); - if ((!boundscheck) || likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) { - PyObject *r = PyTuple_GET_ITEM(o, i); + Py_ssize_t wrapped_i = i; + if (wraparound & unlikely(i < 0)) { + wrapped_i += PyTuple_GET_SIZE(o); + } + if ((!boundscheck) || likely((0 <= wrapped_i) & (wrapped_i < PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, wrapped_i); Py_INCREF(r); return r; } @@ -16731,7 +17050,7 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, } /* BufferFormatCheck */ - static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { + static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { unsigned int n = 1; return *(unsigned char*)(&n) != 0; } @@ -17280,8 +17599,68 @@ static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { __Pyx_ReleaseBuffer(info); } +/* RaiseTooManyValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { + PyErr_Format(PyExc_ValueError, + "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); +} + +/* RaiseNeedMoreValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { + PyErr_Format(PyExc_ValueError, + "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", + index, (index == 1) ? "" : "s"); +} + +/* IterFinish */ + static CYTHON_INLINE int __Pyx_IterFinish(void) { +#if CYTHON_FAST_THREAD_STATE + PyThreadState *tstate = PyThreadState_GET(); + PyObject* exc_type = tstate->curexc_type; + if (unlikely(exc_type)) { + if (likely(exc_type == PyExc_StopIteration) || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)) { + PyObject *exc_value, *exc_tb; + exc_value = tstate->curexc_value; + exc_tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; + Py_DECREF(exc_type); + Py_XDECREF(exc_value); + Py_XDECREF(exc_tb); + return 0; + } else { + return -1; + } + } + return 0; +#else + if (unlikely(PyErr_Occurred())) { + if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) { + PyErr_Clear(); + return 0; + } else { + return -1; + } + } + return 0; +#endif +} + +/* UnpackItemEndCheck */ + static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { + if (unlikely(retval)) { + Py_DECREF(retval); + __Pyx_RaiseTooManyValuesError(expected); + return -1; + } else { + return __Pyx_IterFinish(); + } + return 0; +} + /* ExtTypeTest */ - static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; @@ -17293,26 +17672,13 @@ static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { return 0; } -/* RaiseTooManyValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { - PyErr_Format(PyExc_ValueError, - "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); -} - -/* RaiseNeedMoreValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { - PyErr_Format(PyExc_ValueError, - "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", - index, (index == 1) ? "" : "s"); -} - /* RaiseNoneIterError */ - static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { + static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } /* PyErrFetchRestore */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; tmp_type = tstate->curexc_type; @@ -17336,7 +17702,7 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject #endif /* ArgTypeTest */ - static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { + static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { PyErr_Format(PyExc_TypeError, "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", name, type->tp_name, Py_TYPE(obj)->tp_name); @@ -17363,7 +17729,7 @@ static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, in } /* PyIntBinop */ - #if !CYTHON_COMPILING_IN_PYPY + #if !CYTHON_COMPILING_IN_PYPY static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { #if PY_MAJOR_VERSION < 3 if (likely(PyInt_CheckExact(op1))) { @@ -17479,7 +17845,7 @@ static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED #endif /* PyIntBinop */ - #if !CYTHON_COMPILING_IN_PYPY + #if !CYTHON_COMPILING_IN_PYPY static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { #if PY_MAJOR_VERSION < 3 if (likely(PyInt_CheckExact(op1))) { @@ -17595,12 +17961,12 @@ static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, CYTHON_U #endif /* None */ - static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) { + static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) { PyErr_Format(PyExc_UnboundLocalError, "local variable '%s' referenced before assignment", varname); } /* SaveResetException */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { *type = tstate->exc_type; *value = tstate->exc_value; @@ -17624,7 +17990,7 @@ static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject #endif /* GetException */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { #else static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { @@ -17685,7 +18051,7 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) } /* RaiseException */ - #if PY_MAJOR_VERSION < 3 + #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { __Pyx_PyThreadState_declare @@ -17848,7 +18214,7 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject #endif /* WriteUnraisableException */ - static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, + static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename, int full_traceback, CYTHON_UNUSED int nogil) { PyObject *old_exc, *old_val, *old_tb; @@ -17890,7 +18256,7 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject } /* PyErrExceptionMatches */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) { PyObject *exc_type = tstate->curexc_type; if (exc_type == err) return 1; @@ -17899,8 +18265,42 @@ static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tsta } #endif +/* CLineInTraceback */ + static int __Pyx_CLineForTraceback(int c_line) { +#ifdef CYTHON_CLINE_IN_TRACEBACK + return ((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0; +#else + PyObject **cython_runtime_dict; + PyObject *use_cline; + cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); + if (unlikely(!cython_runtime_dict)) { + PyObject *ptype, *pvalue, *ptraceback; + PyObject *use_cline_obj; + PyErr_Fetch(&ptype, &pvalue, &ptraceback); + use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); + if (use_cline_obj) { + use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; + Py_DECREF(use_cline_obj); + } else { + use_cline = NULL; + } + PyErr_Restore(ptype, pvalue, ptraceback); + } else { + use_cline = PyDict_GetItem(*_PyObject_GetDictPtr(__pyx_cython_runtime), __pyx_n_s_cline_in_traceback); + } + if (!use_cline) { + c_line = 0; + PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); + } + else if (PyObject_Not(use_cline) != 0) { + c_line = 0; + } + return c_line; +#endif +} + /* CodeObjectCache */ - static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; @@ -17980,7 +18380,7 @@ static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { } /* AddTraceback */ - #include "compile.h" + #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( @@ -18039,12 +18439,15 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyFrameObject *py_frame = 0; - py_code = __pyx_find_code_object(c_line ? c_line : py_line); + if (c_line) { + c_line = __Pyx_CLineForTraceback(c_line); + } + py_code = __pyx_find_code_object(c_line ? -c_line : py_line); if (!py_code) { py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) goto bad; - __pyx_insert_code_object(c_line ? c_line : py_line, py_code); + __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); } py_frame = PyFrame_New( PyThreadState_GET(), /*PyThreadState *tstate,*/ @@ -18081,8 +18484,8 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif - /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + /* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -18113,7 +18516,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPyVerify */ - #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) @@ -18135,7 +18538,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -18166,7 +18569,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -18197,7 +18600,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); @@ -18217,7 +18620,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -18352,7 +18755,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); @@ -18372,7 +18775,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -18507,7 +18910,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -18538,7 +18941,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -18727,7 +19130,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -18916,7 +19319,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CheckBinaryVersion */ - static int __Pyx_check_binary_version(void) { + static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); @@ -18932,7 +19335,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* ModuleImport */ - #ifndef __PYX_HAVE_RT_ImportModule + #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; @@ -18950,7 +19353,7 @@ static PyObject *__Pyx_ImportModule(const char *name) { #endif /* TypeImport */ - #ifndef __PYX_HAVE_RT_ImportType + #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) @@ -19015,7 +19418,7 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class #endif /* FunctionImport */ - #ifndef __PYX_HAVE_RT_ImportFunction + #ifndef __PYX_HAVE_RT_ImportFunction #define __PYX_HAVE_RT_ImportFunction static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (**f)(void), const char *sig) { PyObject *d = 0; @@ -19069,7 +19472,7 @@ static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (** #endif /* InitStrings */ - static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { @@ -19094,6 +19497,8 @@ static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (** #endif if (!*t->p) return -1; + if (PyObject_Hash(*t->p) == -1) + PyErr_Clear(); ++t; } return 0; @@ -19102,11 +19507,11 @@ static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (** static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); } -static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } -static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if CYTHON_COMPILING_IN_CPYTHON && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) if ( #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII diff --git a/ccd/procedures.pyx b/ccd/procedures.pyx index 7e4611f..a17c156 100644 --- a/ccd/procedures.pyx +++ b/ccd/procedures.pyx @@ -215,7 +215,6 @@ def insufficient_clear_procedure(dates, observations, fitter_fn, quality, return (result,), processing_mask -#cpdef standard_procedure(dates, observations, fitter_fn, quality, proc_params): cpdef tuple standard_procedure(np.ndarray[LTYPE_t, ndim=1] dates, np.ndarray[STYPE_t, ndim=2] observations, object fitter_fn, @@ -255,6 +254,9 @@ cpdef tuple standard_procedure(np.ndarray[LTYPE_t, ndim=1] dates, 1-d ndarray: processing mask indicating which values were used for model fitting """ + from sklearn.linear_model import Lasso + lasso = Lasso(max_iter=proc_params['LASSO_MAX_ITER']) + # TODO do this better meow_size = proc_params['MEOW_SIZE'] peek_size = proc_params['PEEK_SIZE'] @@ -262,10 +264,6 @@ cpdef tuple standard_procedure(np.ndarray[LTYPE_t, ndim=1] dates, curve_qa = proc_params['CURVE_QA'] detection_bands = proc_params['DETECTION_BANDS'] - from sklearn.linear_model import Lasso - - lasso = Lasso(max_iter=proc_params['LASSO_MAX_ITER']) - #ldebug('Build change models - dates: %s, obs: %s, ' # 'meow_size: %s, peek_size: %s', # dates.shape[0], observations.shape, meow_size, peek_size) diff --git a/setup.py b/setup.py index df4d528..e659aa6 100644 --- a/setup.py +++ b/setup.py @@ -14,15 +14,15 @@ from distutils.extension import Extension import numpy as np -here = path.abspath(path.dirname(__file__)) +here = path.abspath(path.dirname(__file__)) np_incl = np.get_include() -USE_CYTHON=False -EXT_TYPE=".c" +USE_CYTHON = False +EXT_TYPE = ".c" try: import cython - USE_CYTHON=True - EXT_TYPE=".pyx" + USE_CYTHON = True + EXT_TYPE = ".pyx" except ImportError: print("Cython unavailable") From 929ca2b17c6ca982eb52bc3ffd12ad8ba423021a Mon Sep 17 00:00:00 2001 From: clay austin Date: Mon, 28 Aug 2017 16:28:47 -0500 Subject: [PATCH 40/45] move cython type defs into pxd files, cython to compile .py instead of pyx --- ccd/models/lasso.c | 1848 +++-- ccd/models/lasso.pxd | 17 +- ccd/models/{lasso.pyx => lasso.py} | 17 +- ccd/models/robust_fit.c | 5219 ++++++++++----- ccd/models/robust_fit.pxd | 47 + ccd/models/{robust_fit.pyx => robust_fit.py} | 87 +- ccd/models/tmask.c | 1502 ++--- ccd/models/tmask.pxd | 19 +- ccd/models/{tmask.pyx => tmask.py} | 29 +- ccd/procedures.c | 6309 +++++++++--------- ccd/procedures.pxd | 61 + ccd/{procedures.pyx => procedures.py} | 87 +- setup.py | 5 +- test/{test_models.pyx => test_models.py} | 4 +- 14 files changed, 8545 insertions(+), 6706 deletions(-) rename ccd/models/{lasso.pyx => lasso.py} (75%) create mode 100644 ccd/models/robust_fit.pxd rename ccd/models/{robust_fit.pyx => robust_fit.py} (73%) rename ccd/models/{tmask.pyx => tmask.py} (71%) create mode 100644 ccd/procedures.pxd rename ccd/{procedures.pyx => procedures.py} (94%) rename test/{test_models.pyx => test_models.py} (77%) diff --git a/ccd/models/lasso.c b/ccd/models/lasso.c index 5e0304d..b780c61 100644 --- a/ccd/models/lasso.c +++ b/ccd/models/lasso.c @@ -1,14 +1,14 @@ -/* Generated by Cython 0.25.2 */ +/* Generated by Cython 0.26 */ /* BEGIN: Cython Metadata { "distutils": { - "depends": [ - "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h", - "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h" - ], "include_dirs": [ "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include" + ], + "name": "ccd.models.lasso", + "sources": [ + "ccd/models/lasso.py" ] }, "module_name": "ccd.models.lasso" @@ -22,7 +22,7 @@ END: Cython Metadata */ #elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) #error Cython requires Python 2.6+ or Python 3.2+. #else -#define CYTHON_ABI "0_25_2" +#define CYTHON_ABI "0_26" #include #ifndef offsetof #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) @@ -44,6 +44,7 @@ END: Cython Metadata */ #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif +#define __PYX_COMMA , #ifndef HAVE_LONG_LONG #if PY_VERSION_HEX >= 0x03030000 || (PY_MAJOR_VERSION == 2 && PY_VERSION_HEX >= 0x02070000) #define HAVE_LONG_LONG @@ -196,16 +197,20 @@ END: Cython Metadata */ #ifndef Py_TPFLAGS_HAVE_FINALIZE #define Py_TPFLAGS_HAVE_FINALIZE 0 #endif -#ifndef METH_FASTCALL - #define METH_FASTCALL 0x80 - typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, - Py_ssize_t nargs, PyObject *kwnames); +#if PY_VERSION_HEX < 0x030700A0 || !defined(METH_FASTCALL) + #ifndef METH_FASTCALL + #define METH_FASTCALL 0x80 + #endif + typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, Py_ssize_t nargs); + typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject **args, + Py_ssize_t nargs, PyObject *kwnames); #else #define __Pyx_PyCFunctionFast _PyCFunctionFast + #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords #endif #if CYTHON_FAST_PYCCALL #define __Pyx_PyFastCFunction_Check(func)\ - ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST))))) + ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))))) #else #define __Pyx_PyFastCFunction_Check(func) 0 #endif @@ -332,6 +337,12 @@ END: Cython Metadata */ #else #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) #endif +#ifndef __has_attribute + #define __has_attribute(x) 0 +#endif +#ifndef __has_cpp_attribute + #define __has_cpp_attribute(x) 0 +#endif #if CYTHON_USE_ASYNC_SLOTS #if PY_VERSION_HEX >= 0x030500B1 #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods @@ -386,6 +397,35 @@ END: Cython Metadata */ # endif #endif #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) +#ifdef _MSC_VER + #ifndef _MSC_STDINT_H_ + #if _MSC_VER < 1300 + typedef unsigned char uint8_t; + typedef unsigned int uint32_t; + #else + typedef unsigned __int8 uint8_t; + typedef unsigned __int32 uint32_t; + #endif + #endif +#else + #include +#endif +#ifndef CYTHON_FALLTHROUGH + #ifdef __cplusplus + #if __has_cpp_attribute(fallthrough) + #define CYTHON_FALLTHROUGH [[fallthrough]] + #elif __has_cpp_attribute(clang::fallthrough) + #define CYTHON_FALLTHROUGH [[clang::fallthrough]] + #endif + #endif + #ifndef CYTHON_FALLTHROUGH + #if __has_attribute(fallthrough) || (defined(__GNUC__) && defined(__attribute__)) + #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) + #else + #define CYTHON_FALLTHROUGH + #endif + #endif +#endif #ifndef CYTHON_INLINE #if defined(__clang__) @@ -494,8 +534,8 @@ typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* enc #else #define __Pyx_sst_abs(value) ((value<0) ? -value : value) #endif -static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); -static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) #define __Pyx_PyBytes_FromString PyBytes_FromString @@ -508,8 +548,11 @@ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize #endif -#define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) @@ -631,10 +674,12 @@ static int __Pyx_init_sys_getdefaultencoding_params(void) { #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ */ +static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } static PyObject *__pyx_m; static PyObject *__pyx_d; static PyObject *__pyx_b; +static PyObject *__pyx_cython_runtime; static PyObject *__pyx_empty_tuple; static PyObject *__pyx_empty_bytes; static PyObject *__pyx_empty_unicode; @@ -667,7 +712,7 @@ static const char *__pyx_filename; static const char *__pyx_f[] = { - "ccd/models/lasso.pyx", + "ccd/models/lasso.py", "__init__.pxd", "type.pxd", "bool.pxd", @@ -1070,208 +1115,6 @@ typedef PyBoolObject *__pyx_t_3ccd_6models_5lasso_BTYPE_t; #define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0) #define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0) -/* Profile.proto */ -#ifndef CYTHON_PROFILE -#if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_PYSTON - #define CYTHON_PROFILE 0 -#else - #define CYTHON_PROFILE 1 -#endif -#endif -#ifndef CYTHON_TRACE_NOGIL - #define CYTHON_TRACE_NOGIL 0 -#else - #if CYTHON_TRACE_NOGIL && !defined(CYTHON_TRACE) - #define CYTHON_TRACE 1 - #endif -#endif -#ifndef CYTHON_TRACE - #define CYTHON_TRACE 0 -#endif -#if CYTHON_TRACE - #undef CYTHON_PROFILE_REUSE_FRAME -#endif -#ifndef CYTHON_PROFILE_REUSE_FRAME - #define CYTHON_PROFILE_REUSE_FRAME 0 -#endif -#if CYTHON_PROFILE || CYTHON_TRACE - #include "compile.h" - #include "frameobject.h" - #include "traceback.h" - #if CYTHON_PROFILE_REUSE_FRAME - #define CYTHON_FRAME_MODIFIER static - #define CYTHON_FRAME_DEL(frame) - #else - #define CYTHON_FRAME_MODIFIER - #define CYTHON_FRAME_DEL(frame) Py_CLEAR(frame) - #endif - #define __Pyx_TraceDeclarations\ - static PyCodeObject *__pyx_frame_code = NULL;\ - CYTHON_FRAME_MODIFIER PyFrameObject *__pyx_frame = NULL;\ - int __Pyx_use_tracing = 0; - #define __Pyx_TraceFrameInit(codeobj)\ - if (codeobj) __pyx_frame_code = (PyCodeObject*) codeobj; - #ifdef WITH_THREAD - #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ - if (nogil) {\ - if (CYTHON_TRACE_NOGIL) {\ - PyThreadState *tstate;\ - PyGILState_STATE state = PyGILState_Ensure();\ - tstate = PyThreadState_GET();\ - if (unlikely(tstate->use_tracing) && !tstate->tracing &&\ - (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ - __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, funcname, srcfile, firstlineno);\ - }\ - PyGILState_Release(state);\ - if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ - }\ - } else {\ - PyThreadState* tstate = PyThreadState_GET();\ - if (unlikely(tstate->use_tracing) && !tstate->tracing &&\ - (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ - __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, funcname, srcfile, firstlineno);\ - if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ - }\ - } - #else - #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ - { PyThreadState* tstate = PyThreadState_GET();\ - if (unlikely(tstate->use_tracing) && !tstate->tracing &&\ - (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ - __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, funcname, srcfile, firstlineno);\ - if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ - }\ - } - #endif - #define __Pyx_TraceException()\ - if (likely(!__Pyx_use_tracing)); else {\ - PyThreadState* tstate = PyThreadState_GET();\ - if (tstate->use_tracing &&\ - (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ - tstate->tracing++;\ - tstate->use_tracing = 0;\ - PyObject *exc_info = __Pyx_GetExceptionTuple(tstate);\ - if (exc_info) {\ - if (CYTHON_TRACE && tstate->c_tracefunc)\ - tstate->c_tracefunc(\ - tstate->c_traceobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ - tstate->c_profilefunc(\ - tstate->c_profileobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ - Py_DECREF(exc_info);\ - }\ - tstate->use_tracing = 1;\ - tstate->tracing--;\ - }\ - } - static void __Pyx_call_return_trace_func(PyThreadState *tstate, PyFrameObject *frame, PyObject *result) { - PyObject *type, *value, *traceback; - PyErr_Fetch(&type, &value, &traceback); - tstate->tracing++; - tstate->use_tracing = 0; - if (CYTHON_TRACE && tstate->c_tracefunc) - tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_RETURN, result); - if (tstate->c_profilefunc) - tstate->c_profilefunc(tstate->c_profileobj, frame, PyTrace_RETURN, result); - CYTHON_FRAME_DEL(frame); - tstate->use_tracing = 1; - tstate->tracing--; - PyErr_Restore(type, value, traceback); - } - #ifdef WITH_THREAD - #define __Pyx_TraceReturn(result, nogil)\ - if (likely(!__Pyx_use_tracing)); else {\ - if (nogil) {\ - if (CYTHON_TRACE_NOGIL) {\ - PyThreadState *tstate;\ - PyGILState_STATE state = PyGILState_Ensure();\ - tstate = PyThreadState_GET();\ - if (tstate->use_tracing) {\ - __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ - }\ - PyGILState_Release(state);\ - }\ - } else {\ - PyThreadState* tstate = PyThreadState_GET();\ - if (tstate->use_tracing) {\ - __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ - }\ - }\ - } - #else - #define __Pyx_TraceReturn(result, nogil)\ - if (likely(!__Pyx_use_tracing)); else {\ - PyThreadState* tstate = PyThreadState_GET();\ - if (tstate->use_tracing) {\ - __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ - }\ - } - #endif - static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno); - static int __Pyx_TraceSetupAndCall(PyCodeObject** code, PyFrameObject** frame, const char *funcname, const char *srcfile, int firstlineno); -#else - #define __Pyx_TraceDeclarations - #define __Pyx_TraceFrameInit(codeobj) - #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if (1); else goto_error; - #define __Pyx_TraceException() - #define __Pyx_TraceReturn(result, nogil) -#endif -#if CYTHON_TRACE - static int __Pyx_call_line_trace_func(PyThreadState *tstate, PyFrameObject *frame, int lineno) { - int ret; - PyObject *type, *value, *traceback; - PyErr_Fetch(&type, &value, &traceback); - __Pyx_PyFrame_SetLineNumber(frame, lineno); - tstate->tracing++; - tstate->use_tracing = 0; - ret = tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_LINE, NULL); - tstate->use_tracing = 1; - tstate->tracing--; - if (likely(!ret)) { - PyErr_Restore(type, value, traceback); - } else { - Py_XDECREF(type); - Py_XDECREF(value); - Py_XDECREF(traceback); - } - return ret; - } - #ifdef WITH_THREAD - #define __Pyx_TraceLine(lineno, nogil, goto_error)\ - if (likely(!__Pyx_use_tracing)); else {\ - if (nogil) {\ - if (CYTHON_TRACE_NOGIL) {\ - int ret = 0;\ - PyThreadState *tstate;\ - PyGILState_STATE state = PyGILState_Ensure();\ - tstate = PyThreadState_GET();\ - if (unlikely(tstate->use_tracing && tstate->c_tracefunc)) {\ - ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ - }\ - PyGILState_Release(state);\ - if (unlikely(ret)) goto_error;\ - }\ - } else {\ - PyThreadState* tstate = PyThreadState_GET();\ - if (unlikely(tstate->use_tracing && tstate->c_tracefunc)) {\ - int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ - if (unlikely(ret)) goto_error;\ - }\ - }\ - } - #else - #define __Pyx_TraceLine(lineno, nogil, goto_error)\ - if (likely(!__Pyx_use_tracing)); else {\ - PyThreadState* tstate = PyThreadState_GET();\ - if (unlikely(tstate->use_tracing && tstate->c_tracefunc)) {\ - int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ - if (unlikely(ret)) goto_error;\ - 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/* "ccd/models/lasso.pyx":47 + /* "ccd/models/lasso.py":43 + * * + * def fitted_model(dates, spectra_obs, max_iter, avg_days_yr, num_coefficients, lm): # <<<<<<<<<<<<<< * - * cpdef fitted_model(np.ndarray[LTYPE_t, ndim=1] dates, # <<<<<<<<<<<<<< - * np.ndarray[STYPE_t, ndim=1] spectra_obs, - * ITYPE_t max_iter, + * """Create a fully fitted lasso model. */ /* function exit code */ @@ -2791,7 +2694,6 @@ static PyObject *__pyx_f_3ccd_6models_5lasso_fitted_model(PyArrayObject *__pyx_v __Pyx_XDECREF(__pyx_v_rmse); __Pyx_XDECREF(__pyx_v_residuals); __Pyx_XGIVEREF(__pyx_r); - __Pyx_TraceReturn(__pyx_r, 0); __Pyx_RefNannyFinishContext(); return __pyx_r; } @@ -2799,6 +2701,7 @@ static PyObject *__pyx_f_3ccd_6models_5lasso_fitted_model(PyArrayObject *__pyx_v /* Python wrapper */ static PyObject *__pyx_pw_3ccd_6models_5lasso_1fitted_model(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ static char __pyx_doc_3ccd_6models_5lasso_fitted_model[] = "Create a fully fitted lasso model.\n\n Args:\n dates: list or ordinal observation dates\n spectra_obs: list of values corresponding to the observation dates for\n a single spectral band\n num_coefficients: how many coefficients to use for the fit\n max_iter: maximum number of iterations that the coefficients\n undergo to find the convergence point.\n\n Returns:\n sklearn.linear_model.Lasso().fit(observation_dates, observations)\n\n Example:\n fitted_model(dates, obs).predict(...)\n "; +static PyMethodDef __pyx_mdef_3ccd_6models_5lasso_1fitted_model = {"fitted_model", (PyCFunction)__pyx_pw_3ccd_6models_5lasso_1fitted_model, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3ccd_6models_5lasso_fitted_model}; static PyObject *__pyx_pw_3ccd_6models_5lasso_1fitted_model(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { PyArrayObject *__pyx_v_dates = 0; PyArrayObject *__pyx_v_spectra_obs = 0; @@ -2817,11 +2720,17 @@ static PyObject *__pyx_pw_3ccd_6models_5lasso_1fitted_model(PyObject *__pyx_self const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args); switch (pos_args) { case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5); + CYTHON_FALLTHROUGH; case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4); + CYTHON_FALLTHROUGH; case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); + CYTHON_FALLTHROUGH; case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); + CYTHON_FALLTHROUGH; case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); + CYTHON_FALLTHROUGH; case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); + CYTHON_FALLTHROUGH; case 0: break; default: goto __pyx_L5_argtuple_error; } @@ -2830,34 +2739,39 @@ static PyObject *__pyx_pw_3ccd_6models_5lasso_1fitted_model(PyObject *__pyx_self case 0: if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_dates)) != 0)) kw_args--; else goto __pyx_L5_argtuple_error; + CYTHON_FALLTHROUGH; case 1: if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_spectra_obs)) != 0)) kw_args--; else { - __Pyx_RaiseArgtupleInvalid("fitted_model", 1, 6, 6, 1); __PYX_ERR(0, 47, __pyx_L3_error) + __Pyx_RaiseArgtupleInvalid("fitted_model", 1, 6, 6, 1); __PYX_ERR(0, 43, __pyx_L3_error) } + CYTHON_FALLTHROUGH; case 2: if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_max_iter)) != 0)) kw_args--; else { - __Pyx_RaiseArgtupleInvalid("fitted_model", 1, 6, 6, 2); __PYX_ERR(0, 47, __pyx_L3_error) + __Pyx_RaiseArgtupleInvalid("fitted_model", 1, 6, 6, 2); __PYX_ERR(0, 43, __pyx_L3_error) } + CYTHON_FALLTHROUGH; case 3: if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_avg_days_yr)) != 0)) kw_args--; else { - __Pyx_RaiseArgtupleInvalid("fitted_model", 1, 6, 6, 3); __PYX_ERR(0, 47, __pyx_L3_error) + __Pyx_RaiseArgtupleInvalid("fitted_model", 1, 6, 6, 3); __PYX_ERR(0, 43, __pyx_L3_error) } + CYTHON_FALLTHROUGH; case 4: if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_num_coefficients)) != 0)) kw_args--; else { - __Pyx_RaiseArgtupleInvalid("fitted_model", 1, 6, 6, 4); __PYX_ERR(0, 47, __pyx_L3_error) + __Pyx_RaiseArgtupleInvalid("fitted_model", 1, 6, 6, 4); __PYX_ERR(0, 43, __pyx_L3_error) } + CYTHON_FALLTHROUGH; case 5: if (likely((values[5] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_lm)) != 0)) kw_args--; else { - 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/* "ccd/models/lasso.pyx":83 + /* "ccd/models/lasso.py":70 + * * + * def predict(model, dates, avg_days_yr): # <<<<<<<<<<<<<< + * coef_matrix = coefficient_matrix(dates, avg_days_yr, 8) * - * cpdef predict(object model, # <<<<<<<<<<<<<< - * np.ndarray[LTYPE_t, ndim=1] dates, - * FTYPE_t avg_days_yr): */ /* function exit code */ @@ -3086,13 +2995,13 @@ static PyObject *__pyx_f_3ccd_6models_5lasso_predict(PyObject *__pyx_v_model, Py __pyx_L2:; __Pyx_XDECREF((PyObject *)__pyx_v_coef_matrix); __Pyx_XGIVEREF(__pyx_r); - __Pyx_TraceReturn(__pyx_r, 0); __Pyx_RefNannyFinishContext(); return __pyx_r; } /* Python wrapper */ static PyObject *__pyx_pw_3ccd_6models_5lasso_3predict(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ +static PyMethodDef __pyx_mdef_3ccd_6models_5lasso_3predict = {"predict", (PyCFunction)__pyx_pw_3ccd_6models_5lasso_3predict, METH_VARARGS|METH_KEYWORDS, 0}; static PyObject *__pyx_pw_3ccd_6models_5lasso_3predict(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { PyObject *__pyx_v_model = 0; PyArrayObject *__pyx_v_dates = 0; @@ -3108,8 +3017,11 @@ static PyObject *__pyx_pw_3ccd_6models_5lasso_3predict(PyObject *__pyx_self, PyO const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args); switch (pos_args) { case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); + CYTHON_FALLTHROUGH; case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); + CYTHON_FALLTHROUGH; case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); + CYTHON_FALLTHROUGH; case 0: break; default: goto __pyx_L5_argtuple_error; } @@ -3118,19 +3030,21 @@ static PyObject *__pyx_pw_3ccd_6models_5lasso_3predict(PyObject *__pyx_self, PyO case 0: if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_model)) != 0)) kw_args--; else goto __pyx_L5_argtuple_error; + CYTHON_FALLTHROUGH; case 1: if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_dates)) != 0)) kw_args--; else { - 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/* "ccd/models/lasso.pyx":1 - * # cython: profile=True # <<<<<<<<<<<<<< - * import numpy as np - * cimport numpy as np + /* "ccd/models/lasso.py":43 + * + * + * def fitted_model(dates, spectra_obs, max_iter, avg_days_yr, num_coefficients, lm): # <<<<<<<<<<<<<< + * + * """Create a fully fitted lasso model. + */ + __pyx_t_1 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ccd_6models_5lasso_1fitted_model, 0, __pyx_n_s_fitted_model, NULL, __pyx_n_s_ccd_models_lasso, __pyx_d, ((PyObject *)__pyx_codeobj__25)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 43, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_fitted_model, __pyx_t_1) < 0) __PYX_ERR(0, 43, __pyx_L1_error) + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + + /* "ccd/models/lasso.py":70 + * + * + * def predict(model, dates, avg_days_yr): # <<<<<<<<<<<<<< + * coef_matrix = coefficient_matrix(dates, avg_days_yr, 8) + * + */ + __pyx_t_1 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ccd_6models_5lasso_3predict, 0, __pyx_n_s_predict, NULL, __pyx_n_s_ccd_models_lasso, __pyx_d, ((PyObject *)__pyx_codeobj__27)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 70, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_predict, __pyx_t_1) < 0) __PYX_ERR(0, 70, __pyx_L1_error) + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + + /* "ccd/models/lasso.py":1 + * import numpy as np # <<<<<<<<<<<<<< + * + * from ccd.models import FittedModel */ __pyx_t_1 = PyDict_New(); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); @@ -6250,7 +6160,6 @@ PyMODINIT_FUNC PyInit_lasso(void) * try: * _import_umath() */ - 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Py_XDECREF(type); - Py_XDECREF(value); - Py_XDECREF(traceback); - return -1; - } -} -static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno) { - PyObject *py_srcfile = 0; - PyObject *py_funcname = 0; - PyCodeObject *py_code = 0; - #if PY_MAJOR_VERSION < 3 - py_funcname = PyString_FromString(funcname); - py_srcfile = PyString_FromString(srcfile); - #else - py_funcname = PyUnicode_FromString(funcname); - py_srcfile = PyUnicode_FromString(srcfile); - #endif - if (!py_funcname | !py_srcfile) goto bad; - py_code = PyCode_New( - 0, - #if PY_MAJOR_VERSION >= 3 - 0, - #endif - 0, - 0, - 0, - __pyx_empty_bytes, /*PyObject *code,*/ - __pyx_empty_tuple, /*PyObject *consts,*/ - __pyx_empty_tuple, /*PyObject *names,*/ - __pyx_empty_tuple, /*PyObject *varnames,*/ - __pyx_empty_tuple, /*PyObject *freevars,*/ - __pyx_empty_tuple, /*PyObject *cellvars,*/ - py_srcfile, /*PyObject *filename,*/ - py_funcname, /*PyObject *name,*/ - firstlineno, - __pyx_empty_bytes /*PyObject *lnotab*/ - ); -bad: - Py_XDECREF(py_srcfile); - Py_XDECREF(py_funcname); - return py_code; -} -#endif - /* BufferFormatCheck */ static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { unsigned int n = 1; @@ -6994,17 +6810,22 @@ static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, P PyCFunctionObject *func = (PyCFunctionObject*)func_obj; PyCFunction meth = PyCFunction_GET_FUNCTION(func); PyObject *self = PyCFunction_GET_SELF(func); + int flags = PyCFunction_GET_FLAGS(func); assert(PyCFunction_Check(func)); - assert(METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST))); + assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))); assert(nargs >= 0); assert(nargs == 0 || args != NULL); /* _PyCFunction_FastCallDict() must not be called with an exception set, because it may clear it (directly or indirectly) and so the caller loses its exception */ assert(!PyErr_Occurred()); - return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL); + if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) { + return (*((__Pyx_PyCFunctionFastWithKeywords)meth)) (self, args, nargs, NULL); + } else { + return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs); + } } -#endif // CYTHON_FAST_PYCCALL +#endif /* PyFunctionFastCall */ #if CYTHON_FAST_PYCALL @@ -7123,8 +6944,8 @@ static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_LeaveRecursiveCall(); return result; } -#endif // CPython < 3.6 -#endif // CYTHON_FAST_PYCALL +#endif +#endif /* PyObjectCallMethO */ #if CYTHON_COMPILING_IN_CPYTHON @@ -7164,11 +6985,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec return __Pyx_PyFunction_FastCall(func, &arg, 1); } #endif -#ifdef __Pyx_CyFunction_USED - if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { -#else if (likely(PyCFunction_Check(func))) { -#endif if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { return __Pyx_PyObject_CallMethO(func, arg); #if CYTHON_FAST_PYCCALL @@ -7191,7 +7008,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec #endif /* ExtTypeTest */ - static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; @@ -7204,7 +7021,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec } /* PyErrFetchRestore */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; tmp_type = tstate->curexc_type; @@ -7228,20 +7045,20 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject #endif /* RaiseTooManyValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { + static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } /* RaiseNeedMoreValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { + static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } /* IterFinish */ - static CYTHON_INLINE int __Pyx_IterFinish(void) { + static CYTHON_INLINE int __Pyx_IterFinish(void) { #if CYTHON_FAST_THREAD_STATE PyThreadState *tstate = PyThreadState_GET(); PyObject* exc_type = tstate->curexc_type; @@ -7276,7 +7093,7 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject } /* UnpackItemEndCheck */ - static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { + static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { if (unlikely(retval)) { Py_DECREF(retval); __Pyx_RaiseTooManyValuesError(expected); @@ -7288,7 +7105,7 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject } /* RaiseArgTupleInvalid */ - static void __Pyx_RaiseArgtupleInvalid( + static void __Pyx_RaiseArgtupleInvalid( const char* func_name, int exact, Py_ssize_t num_min, @@ -7314,7 +7131,7 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject } /* RaiseDoubleKeywords */ - static void __Pyx_RaiseDoubleKeywordsError( + static void __Pyx_RaiseDoubleKeywordsError( const char* func_name, PyObject* kw_name) { @@ -7328,7 +7145,7 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject } /* ParseKeywords */ - static int __Pyx_ParseOptionalKeywords( + static int __Pyx_ParseOptionalKeywords( PyObject *kwds, PyObject **argnames[], PyObject *kwds2, @@ -7430,7 +7247,7 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject } /* ArgTypeTest */ - static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { + static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { PyErr_Format(PyExc_TypeError, "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", name, type->tp_name, Py_TYPE(obj)->tp_name); @@ -7457,7 +7274,7 @@ static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, in } /* RaiseException */ - #if PY_MAJOR_VERSION < 3 + #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { __Pyx_PyThreadState_declare @@ -7619,55 +7436,13 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject } #endif -/* WriteUnraisableException */ - static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, - CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename, - int full_traceback, CYTHON_UNUSED int nogil) { - PyObject *old_exc, *old_val, *old_tb; - PyObject *ctx; - __Pyx_PyThreadState_declare -#ifdef WITH_THREAD - PyGILState_STATE state; - if (nogil) - state = PyGILState_Ensure(); -#ifdef _MSC_VER - else state = (PyGILState_STATE)-1; -#endif -#endif - __Pyx_PyThreadState_assign - __Pyx_ErrFetch(&old_exc, &old_val, &old_tb); - if (full_traceback) { - Py_XINCREF(old_exc); - Py_XINCREF(old_val); - Py_XINCREF(old_tb); - __Pyx_ErrRestore(old_exc, old_val, old_tb); - PyErr_PrintEx(1); - } - #if PY_MAJOR_VERSION < 3 - ctx = PyString_FromString(name); - #else - ctx = PyUnicode_FromString(name); - #endif - __Pyx_ErrRestore(old_exc, old_val, old_tb); - if (!ctx) { - PyErr_WriteUnraisable(Py_None); - } else { - PyErr_WriteUnraisable(ctx); - Py_DECREF(ctx); - } -#ifdef WITH_THREAD - if (nogil) - PyGILState_Release(state); -#endif -} - /* RaiseNoneIterError */ - static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { + static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } /* SaveResetException */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { *type = tstate->exc_type; *value = tstate->exc_value; @@ -7691,7 +7466,7 @@ static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject #endif /* PyErrExceptionMatches */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) { PyObject *exc_type = tstate->curexc_type; if (exc_type == err) return 1; @@ -7701,7 +7476,7 @@ static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tsta #endif /* GetException */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { #else static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { @@ -7762,7 +7537,7 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) } /* Import */ - static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { + static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { PyObject *empty_list = 0; PyObject *module = 0; PyObject *global_dict = 0; @@ -7836,7 +7611,7 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) } /* ImportFrom */ - static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { + static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { PyErr_Format(PyExc_ImportError, @@ -7849,8 +7624,664 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) return value; } +/* FetchCommonType */ + static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) { + PyObject* fake_module; + PyTypeObject* cached_type = NULL; + fake_module = PyImport_AddModule((char*) "_cython_" CYTHON_ABI); + if (!fake_module) return NULL; + Py_INCREF(fake_module); + cached_type = (PyTypeObject*) PyObject_GetAttrString(fake_module, type->tp_name); + if (cached_type) { + if (!PyType_Check((PyObject*)cached_type)) { + PyErr_Format(PyExc_TypeError, + "Shared Cython type %.200s is not a type object", + type->tp_name); + goto bad; + } + if (cached_type->tp_basicsize != type->tp_basicsize) { + PyErr_Format(PyExc_TypeError, + "Shared Cython type %.200s has the wrong size, try recompiling", + type->tp_name); + goto bad; + } + } else { + if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad; + PyErr_Clear(); + if (PyType_Ready(type) < 0) goto bad; + if (PyObject_SetAttrString(fake_module, type->tp_name, (PyObject*) type) < 0) + goto bad; + Py_INCREF(type); + cached_type = type; + } +done: + Py_DECREF(fake_module); + return cached_type; +bad: + Py_XDECREF(cached_type); + cached_type = NULL; + goto done; +} + +/* CythonFunction */ + static PyObject * +__Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *closure) +{ + if (unlikely(op->func_doc == NULL)) { + if (op->func.m_ml->ml_doc) { +#if PY_MAJOR_VERSION >= 3 + op->func_doc = PyUnicode_FromString(op->func.m_ml->ml_doc); +#else + op->func_doc = PyString_FromString(op->func.m_ml->ml_doc); +#endif + if (unlikely(op->func_doc == NULL)) + return NULL; + } else { + Py_INCREF(Py_None); + return Py_None; + } + } + Py_INCREF(op->func_doc); + return op->func_doc; +} +static int +__Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp = op->func_doc; + if (value == NULL) { + value = Py_None; + } + Py_INCREF(value); + op->func_doc = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op) +{ + if (unlikely(op->func_name == NULL)) { +#if PY_MAJOR_VERSION >= 3 + op->func_name = PyUnicode_InternFromString(op->func.m_ml->ml_name); +#else + op->func_name = PyString_InternFromString(op->func.m_ml->ml_name); +#endif + if (unlikely(op->func_name == NULL)) + return NULL; + } + Py_INCREF(op->func_name); + return op->func_name; +} +static int +__Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp; +#if PY_MAJOR_VERSION >= 3 + if (unlikely(value == NULL || !PyUnicode_Check(value))) { +#else + if (unlikely(value == NULL || !PyString_Check(value))) { +#endif + PyErr_SetString(PyExc_TypeError, + "__name__ must be set to a string object"); + return -1; + } + tmp = op->func_name; + Py_INCREF(value); + op->func_name = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op) +{ + Py_INCREF(op->func_qualname); + return op->func_qualname; +} +static int +__Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp; +#if PY_MAJOR_VERSION >= 3 + if (unlikely(value == NULL || !PyUnicode_Check(value))) { +#else + if (unlikely(value == NULL || !PyString_Check(value))) { +#endif + PyErr_SetString(PyExc_TypeError, + "__qualname__ must be set to a string object"); + return -1; + } + tmp = op->func_qualname; + Py_INCREF(value); + op->func_qualname = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_self(__pyx_CyFunctionObject *m, CYTHON_UNUSED void *closure) +{ + PyObject *self; + self = m->func_closure; + if (self == NULL) + self = Py_None; + Py_INCREF(self); + return self; +} +static PyObject * +__Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op) +{ + if (unlikely(op->func_dict == NULL)) { + op->func_dict = PyDict_New(); + if (unlikely(op->func_dict == NULL)) + return NULL; + } + Py_INCREF(op->func_dict); + return op->func_dict; +} +static int +__Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp; + if (unlikely(value == NULL)) { + PyErr_SetString(PyExc_TypeError, + "function's dictionary may not be deleted"); + return -1; + } + if (unlikely(!PyDict_Check(value))) { + PyErr_SetString(PyExc_TypeError, + "setting function's dictionary to a non-dict"); + return -1; + } + tmp = op->func_dict; + Py_INCREF(value); + op->func_dict = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op) +{ + Py_INCREF(op->func_globals); + return op->func_globals; +} +static PyObject * +__Pyx_CyFunction_get_closure(CYTHON_UNUSED __pyx_CyFunctionObject *op) +{ + Py_INCREF(Py_None); + return Py_None; +} +static PyObject * +__Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op) +{ + PyObject* result = (op->func_code) ? op->func_code : Py_None; + Py_INCREF(result); + return result; +} +static int +__Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) { + int result = 0; + PyObject *res = op->defaults_getter((PyObject *) op); + if (unlikely(!res)) + return -1; + #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + op->defaults_tuple = PyTuple_GET_ITEM(res, 0); + Py_INCREF(op->defaults_tuple); + op->defaults_kwdict = PyTuple_GET_ITEM(res, 1); + Py_INCREF(op->defaults_kwdict); + #else + op->defaults_tuple = PySequence_ITEM(res, 0); + if (unlikely(!op->defaults_tuple)) result = -1; + else { + op->defaults_kwdict = PySequence_ITEM(res, 1); + if (unlikely(!op->defaults_kwdict)) result = -1; + } + #endif + Py_DECREF(res); + return result; +} +static int +__Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value) { + PyObject* tmp; + if (!value) { + value = Py_None; + } else if (value != Py_None && !PyTuple_Check(value)) { + PyErr_SetString(PyExc_TypeError, + "__defaults__ must be set to a tuple object"); + return -1; + } + Py_INCREF(value); + tmp = op->defaults_tuple; + op->defaults_tuple = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op) { + PyObject* result = op->defaults_tuple; + if (unlikely(!result)) { + if (op->defaults_getter) { + if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL; + result = op->defaults_tuple; + } else { + result = Py_None; + } + } + Py_INCREF(result); + return result; +} +static int +__Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value) { + PyObject* tmp; + if (!value) { + value = Py_None; + } else if (value != Py_None && !PyDict_Check(value)) { + PyErr_SetString(PyExc_TypeError, + "__kwdefaults__ must be set to a dict object"); + return -1; + } + Py_INCREF(value); + tmp = op->defaults_kwdict; + op->defaults_kwdict = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op) { + PyObject* result = op->defaults_kwdict; + if (unlikely(!result)) { + if (op->defaults_getter) { + if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL; + result = op->defaults_kwdict; + } else { + result = Py_None; + } + } + Py_INCREF(result); + return result; +} +static int +__Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value) { + PyObject* tmp; + if (!value || value == Py_None) { + value = NULL; + } else if (!PyDict_Check(value)) { + PyErr_SetString(PyExc_TypeError, + "__annotations__ must be set to a dict object"); + return -1; + } + Py_XINCREF(value); + tmp = op->func_annotations; + op->func_annotations = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op) { + PyObject* result = op->func_annotations; + if (unlikely(!result)) { + result = PyDict_New(); + if (unlikely(!result)) return NULL; + op->func_annotations = result; + } + Py_INCREF(result); + return result; +} +static PyGetSetDef __pyx_CyFunction_getsets[] = { + {(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, + {(char *) "__doc__", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, + {(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, + {(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, + {(char *) "__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0}, + {(char *) "__self__", (getter)__Pyx_CyFunction_get_self, 0, 0, 0}, + {(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, + {(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, + {(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, + {(char *) "__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, + {(char *) "func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, + {(char *) "__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, + {(char *) "func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, + {(char *) "__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, + {(char *) "func_defaults", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, + {(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, + {(char *) "__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0}, + {(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0}, + {0, 0, 0, 0, 0} +}; +static PyMemberDef __pyx_CyFunction_members[] = { + {(char *) "__module__", T_OBJECT, offsetof(__pyx_CyFunctionObject, func.m_module), PY_WRITE_RESTRICTED, 0}, + {0, 0, 0, 0, 0} +}; +static PyObject * +__Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, CYTHON_UNUSED PyObject *args) +{ +#if PY_MAJOR_VERSION >= 3 + return PyUnicode_FromString(m->func.m_ml->ml_name); +#else + return PyString_FromString(m->func.m_ml->ml_name); +#endif +} +static PyMethodDef __pyx_CyFunction_methods[] = { + {"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0}, + {0, 0, 0, 0} +}; +#if PY_VERSION_HEX < 0x030500A0 +#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist) +#else +#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func.m_weakreflist) +#endif +static PyObject *__Pyx_CyFunction_New(PyTypeObject *type, PyMethodDef *ml, int flags, PyObject* qualname, + PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { + __pyx_CyFunctionObject *op = PyObject_GC_New(__pyx_CyFunctionObject, type); + if (op == NULL) + return NULL; + op->flags = flags; + __Pyx_CyFunction_weakreflist(op) = NULL; + op->func.m_ml = ml; + op->func.m_self = (PyObject *) op; + Py_XINCREF(closure); + op->func_closure = closure; + Py_XINCREF(module); + op->func.m_module = module; + op->func_dict = NULL; + op->func_name = NULL; + Py_INCREF(qualname); + op->func_qualname = qualname; + op->func_doc = NULL; + op->func_classobj = NULL; + op->func_globals = globals; + Py_INCREF(op->func_globals); + Py_XINCREF(code); + op->func_code = code; + op->defaults_pyobjects = 0; + op->defaults = NULL; + op->defaults_tuple = NULL; + op->defaults_kwdict = NULL; + op->defaults_getter = NULL; + op->func_annotations = NULL; + PyObject_GC_Track(op); + return (PyObject *) op; +} +static int +__Pyx_CyFunction_clear(__pyx_CyFunctionObject *m) +{ + Py_CLEAR(m->func_closure); + Py_CLEAR(m->func.m_module); + Py_CLEAR(m->func_dict); + Py_CLEAR(m->func_name); + Py_CLEAR(m->func_qualname); + Py_CLEAR(m->func_doc); + Py_CLEAR(m->func_globals); + Py_CLEAR(m->func_code); + Py_CLEAR(m->func_classobj); + Py_CLEAR(m->defaults_tuple); + Py_CLEAR(m->defaults_kwdict); + Py_CLEAR(m->func_annotations); + if (m->defaults) { + PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); + int i; + for (i = 0; i < m->defaults_pyobjects; i++) + Py_XDECREF(pydefaults[i]); + PyObject_Free(m->defaults); + m->defaults = NULL; + } + return 0; +} +static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m) +{ + PyObject_GC_UnTrack(m); + if (__Pyx_CyFunction_weakreflist(m) != NULL) + PyObject_ClearWeakRefs((PyObject *) m); + __Pyx_CyFunction_clear(m); + PyObject_GC_Del(m); +} +static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg) +{ + Py_VISIT(m->func_closure); + Py_VISIT(m->func.m_module); + Py_VISIT(m->func_dict); + Py_VISIT(m->func_name); + Py_VISIT(m->func_qualname); + Py_VISIT(m->func_doc); + Py_VISIT(m->func_globals); + Py_VISIT(m->func_code); + Py_VISIT(m->func_classobj); + Py_VISIT(m->defaults_tuple); + Py_VISIT(m->defaults_kwdict); + if (m->defaults) { + PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); + int i; + for (i = 0; i < m->defaults_pyobjects; i++) + Py_VISIT(pydefaults[i]); + } + return 0; +} +static PyObject *__Pyx_CyFunction_descr_get(PyObject *func, PyObject *obj, PyObject *type) +{ + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + if (m->flags & __Pyx_CYFUNCTION_STATICMETHOD) { + Py_INCREF(func); + return func; + } + if (m->flags & __Pyx_CYFUNCTION_CLASSMETHOD) { + if (type == NULL) + type = (PyObject *)(Py_TYPE(obj)); + return __Pyx_PyMethod_New(func, type, (PyObject *)(Py_TYPE(type))); + } + if (obj == Py_None) + obj = NULL; + return __Pyx_PyMethod_New(func, obj, type); +} +static PyObject* +__Pyx_CyFunction_repr(__pyx_CyFunctionObject *op) +{ +#if PY_MAJOR_VERSION >= 3 + return PyUnicode_FromFormat("", + op->func_qualname, (void *)op); +#else + return PyString_FromFormat("", + PyString_AsString(op->func_qualname), (void *)op); +#endif +} +static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, PyObject *arg, PyObject *kw) { + PyCFunctionObject* f = (PyCFunctionObject*)func; + PyCFunction meth = f->m_ml->ml_meth; + Py_ssize_t size; + switch (f->m_ml->ml_flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) { + case METH_VARARGS: + if (likely(kw == NULL || PyDict_Size(kw) == 0)) + return (*meth)(self, arg); + break; + case METH_VARARGS | METH_KEYWORDS: + return (*(PyCFunctionWithKeywords)meth)(self, arg, kw); + case METH_NOARGS: + if (likely(kw == NULL || PyDict_Size(kw) == 0)) { + size = PyTuple_GET_SIZE(arg); + if (likely(size == 0)) + return (*meth)(self, NULL); + PyErr_Format(PyExc_TypeError, + "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", + f->m_ml->ml_name, size); + return NULL; + } + break; + case METH_O: + if (likely(kw == NULL || PyDict_Size(kw) == 0)) { + size = PyTuple_GET_SIZE(arg); + if (likely(size == 1)) { + PyObject *result, *arg0 = PySequence_ITEM(arg, 0); + if (unlikely(!arg0)) return NULL; + result = (*meth)(self, arg0); + Py_DECREF(arg0); + return result; + } + PyErr_Format(PyExc_TypeError, + "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", + f->m_ml->ml_name, size); + return NULL; + } + break; + default: + PyErr_SetString(PyExc_SystemError, "Bad call flags in " + "__Pyx_CyFunction_Call. METH_OLDARGS is no " + "longer supported!"); + return NULL; + } + PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments", + f->m_ml->ml_name); + return NULL; +} +static CYTHON_INLINE PyObject *__Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) { + return __Pyx_CyFunction_CallMethod(func, ((PyCFunctionObject*)func)->m_self, arg, kw); +} +static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, PyObject *kw) { + PyObject *result; + __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *) func; + if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { + Py_ssize_t argc; + PyObject *new_args; + PyObject *self; + argc = PyTuple_GET_SIZE(args); + new_args = PyTuple_GetSlice(args, 1, argc); + if (unlikely(!new_args)) + return NULL; + self = PyTuple_GetItem(args, 0); + if (unlikely(!self)) { + Py_DECREF(new_args); + return NULL; + } + result = __Pyx_CyFunction_CallMethod(func, self, new_args, kw); + Py_DECREF(new_args); + } else { + result = __Pyx_CyFunction_Call(func, args, kw); + } + return result; +} +static PyTypeObject __pyx_CyFunctionType_type = { + PyVarObject_HEAD_INIT(0, 0) + "cython_function_or_method", + sizeof(__pyx_CyFunctionObject), + 0, + (destructor) __Pyx_CyFunction_dealloc, + 0, + 0, + 0, +#if PY_MAJOR_VERSION < 3 + 0, +#else + 0, +#endif + (reprfunc) __Pyx_CyFunction_repr, + 0, + 0, + 0, + 0, + __Pyx_CyFunction_CallAsMethod, + 0, + 0, + 0, + 0, + Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC, + 0, + (traverseproc) __Pyx_CyFunction_traverse, + (inquiry) __Pyx_CyFunction_clear, + 0, +#if PY_VERSION_HEX < 0x030500A0 + offsetof(__pyx_CyFunctionObject, func_weakreflist), +#else + offsetof(PyCFunctionObject, m_weakreflist), +#endif + 0, + 0, + __pyx_CyFunction_methods, + __pyx_CyFunction_members, + __pyx_CyFunction_getsets, + 0, + 0, + __Pyx_CyFunction_descr_get, + 0, + offsetof(__pyx_CyFunctionObject, func_dict), + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, +#if PY_VERSION_HEX >= 0x030400a1 + 0, +#endif +}; +static int __pyx_CyFunction_init(void) { + __pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type); + if (__pyx_CyFunctionType == NULL) { + return -1; + } + return 0; +} +static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->defaults = PyObject_Malloc(size); + if (!m->defaults) + return PyErr_NoMemory(); + memset(m->defaults, 0, size); + m->defaults_pyobjects = pyobjects; + return m->defaults; +} +static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->defaults_tuple = tuple; + Py_INCREF(tuple); +} +static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->defaults_kwdict = dict; + Py_INCREF(dict); +} +static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->func_annotations = dict; + Py_INCREF(dict); +} + +/* CLineInTraceback */ + static int __Pyx_CLineForTraceback(int c_line) { +#ifdef CYTHON_CLINE_IN_TRACEBACK + return ((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0; +#else + PyObject **cython_runtime_dict; + PyObject *use_cline; + cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); + if (unlikely(!cython_runtime_dict)) { + PyObject *ptype, *pvalue, *ptraceback; + PyObject *use_cline_obj; + PyErr_Fetch(&ptype, &pvalue, &ptraceback); + use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); + if (use_cline_obj) { + use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; + Py_DECREF(use_cline_obj); + } else { + use_cline = NULL; + } + PyErr_Restore(ptype, pvalue, ptraceback); + } else { + use_cline = PyDict_GetItem(*_PyObject_GetDictPtr(__pyx_cython_runtime), __pyx_n_s_cline_in_traceback); + } + if (!use_cline) { + c_line = 0; + PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); + } + else if (PyObject_Not(use_cline) != 0) { + c_line = 0; + } + return c_line; +#endif +} + /* CodeObjectCache */ - static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; @@ -7930,7 +8361,7 @@ static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { } /* AddTraceback */ - #include "compile.h" + #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( @@ -7989,12 +8420,15 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyFrameObject *py_frame = 0; - py_code = __pyx_find_code_object(c_line ? c_line : py_line); + if (c_line) { + c_line = __Pyx_CLineForTraceback(c_line); + } + py_code = __pyx_find_code_object(c_line ? -c_line : py_line); if (!py_code) { py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) goto bad; - __pyx_insert_code_object(c_line ? c_line : py_line, py_code); + __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); } py_frame = PyFrame_New( PyThreadState_GET(), /*PyThreadState *tstate,*/ @@ -8031,8 +8465,8 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif - /* CIntFromPyVerify */ - #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + /* CIntFromPyVerify */ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) @@ -8054,7 +8488,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); @@ -8074,7 +8508,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -8209,7 +8643,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); @@ -8229,7 +8663,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -8364,7 +8798,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -8395,7 +8829,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -8426,7 +8860,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -8615,7 +9049,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -8646,7 +9080,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -8835,7 +9269,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CheckBinaryVersion */ - static int __Pyx_check_binary_version(void) { + static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); @@ -8851,7 +9285,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* FunctionExport */ - static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig) { + static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig) { PyObject *d = 0; PyObject *cobj = 0; union { @@ -8888,7 +9322,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* ModuleImport */ - #ifndef __PYX_HAVE_RT_ImportModule + #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; @@ -8906,7 +9340,7 @@ static PyObject *__Pyx_ImportModule(const char *name) { #endif /* TypeImport */ - #ifndef __PYX_HAVE_RT_ImportType + #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) @@ -8971,7 +9405,7 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class #endif /* InitStrings */ - static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { @@ -8996,6 +9430,8 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class #endif if (!*t->p) return -1; + if (PyObject_Hash(*t->p) == -1) + PyErr_Clear(); ++t; } return 0; @@ -9004,11 +9440,11 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); } -static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } -static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if CYTHON_COMPILING_IN_CPYTHON && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) if ( #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII diff --git a/ccd/models/lasso.pxd b/ccd/models/lasso.pxd index d39129d..2e2edc7 100644 --- a/ccd/models/lasso.pxd +++ b/ccd/models/lasso.pxd @@ -10,6 +10,17 @@ ctypedef bool BTYPE_t ctypedef np.long_t LTYPE_t -cdef np.ndarray coefficient_matrix(np.ndarray[LTYPE_t, ndim=1], - FTYPE_t, - ITYPE_t) \ No newline at end of file +cdef np.ndarray coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, + FTYPE_t avg_days_yr, + ITYPE_t num_coefficients) + +cpdef object fitted_model(np.ndarray[LTYPE_t, ndim=1] dates, + np.ndarray[STYPE_t, ndim=1] spectra_obs, + ITYPE_t max_iter, + FTYPE_t avg_days_yr, + ITYPE_t num_coefficients, + object lm) + +cpdef predict(object model, + np.ndarray[LTYPE_t, ndim=1] dates, + FTYPE_t avg_days_yr) \ No newline at end of file diff --git a/ccd/models/lasso.pyx b/ccd/models/lasso.py similarity index 75% rename from ccd/models/lasso.pyx rename to ccd/models/lasso.py index 73779bd..33f5fa2 100644 --- a/ccd/models/lasso.pyx +++ b/ccd/models/lasso.py @@ -1,14 +1,10 @@ -# cython: profile=True import numpy as np -cimport numpy as np from ccd.models import FittedModel from ccd.math_utils import calc_rmse -cdef np.ndarray coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, - FTYPE_t avg_days_yr, - ITYPE_t num_coefficients): +def coefficient_matrix(dates, avg_days_yr, num_coefficients): """ Fourier transform function to be used for the matrix of inputs for model fitting @@ -44,12 +40,7 @@ return matrix -cpdef fitted_model(np.ndarray[LTYPE_t, ndim=1] dates, - np.ndarray[STYPE_t, ndim=1] spectra_obs, - ITYPE_t max_iter, - FTYPE_t avg_days_yr, - ITYPE_t num_coefficients, - object lm): +def fitted_model(dates, spectra_obs, max_iter, avg_days_yr, num_coefficients, lm): """Create a fully fitted lasso model. @@ -76,9 +67,7 @@ return FittedModel(fitted_model=model, rmse=rmse, residual=residuals) -cpdef predict(object model, - np.ndarray[LTYPE_t, ndim=1] dates, - FTYPE_t avg_days_yr): +def predict(model, dates, avg_days_yr): coef_matrix = coefficient_matrix(dates, avg_days_yr, 8) return model.fitted_model.predict(coef_matrix) diff --git a/ccd/models/robust_fit.c b/ccd/models/robust_fit.c index 4aa47ae..9727f78 100644 --- a/ccd/models/robust_fit.c +++ b/ccd/models/robust_fit.c @@ -3,16 +3,12 @@ /* BEGIN: Cython Metadata { "distutils": { - "depends": [ - "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h", - "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h" - ], "include_dirs": [ - "/home/caustin/miniconda2/envs/foo/lib/python3.5/site-packages/numpy/core/include" + "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include" ], "name": "ccd.models.robust_fit", "sources": [ - "ccd/models/robust_fit.pyx" + "ccd/models/robust_fit.py" ] }, "module_name": "ccd.models.robust_fit" @@ -716,7 +712,8 @@ static const char *__pyx_filename; static const char *__pyx_f[] = { - "ccd/models/robust_fit.pyx", + "ccd/models/robust_fit.py", + "ccd/models/robust_fit.pxd", "stringsource", "__init__.pxd", "type.pxd", @@ -760,7 +757,7 @@ typedef struct { } __Pyx_BufFmt_Context; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":725 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":725 * # in Cython to enable them only on the right systems. * * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< @@ -769,7 +766,7 @@ typedef struct { */ typedef npy_int8 __pyx_t_5numpy_int8_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":726 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":726 * * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< @@ -778,7 +775,7 @@ typedef npy_int8 __pyx_t_5numpy_int8_t; */ typedef npy_int16 __pyx_t_5numpy_int16_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":727 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":727 * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< @@ -787,7 +784,7 @@ typedef npy_int16 __pyx_t_5numpy_int16_t; */ typedef npy_int32 __pyx_t_5numpy_int32_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":728 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":728 * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< @@ -796,7 +793,7 @@ typedef npy_int32 __pyx_t_5numpy_int32_t; */ typedef npy_int64 __pyx_t_5numpy_int64_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":732 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":732 * #ctypedef npy_int128 int128_t * * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< @@ -805,7 +802,7 @@ typedef npy_int64 __pyx_t_5numpy_int64_t; */ typedef npy_uint8 __pyx_t_5numpy_uint8_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":733 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":733 * * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< @@ -814,7 +811,7 @@ typedef npy_uint8 __pyx_t_5numpy_uint8_t; */ typedef npy_uint16 __pyx_t_5numpy_uint16_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":734 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":734 * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< @@ -823,7 +820,7 @@ typedef npy_uint16 __pyx_t_5numpy_uint16_t; */ typedef npy_uint32 __pyx_t_5numpy_uint32_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":735 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":735 * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< @@ -832,7 +829,7 @@ typedef npy_uint32 __pyx_t_5numpy_uint32_t; */ typedef npy_uint64 __pyx_t_5numpy_uint64_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":739 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":739 * #ctypedef npy_uint128 uint128_t * * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< @@ -841,7 +838,7 @@ typedef npy_uint64 __pyx_t_5numpy_uint64_t; */ typedef npy_float32 __pyx_t_5numpy_float32_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":740 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":740 * * ctypedef npy_float32 float32_t * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< @@ -850,7 +847,7 @@ typedef npy_float32 __pyx_t_5numpy_float32_t; */ typedef npy_float64 __pyx_t_5numpy_float64_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":749 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":749 * # The int types are mapped a bit surprising -- * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t # <<<<<<<<<<<<<< @@ -859,7 +856,7 @@ typedef npy_float64 __pyx_t_5numpy_float64_t; */ typedef npy_long __pyx_t_5numpy_int_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":750 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":750 * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< @@ -868,7 +865,7 @@ typedef npy_long __pyx_t_5numpy_int_t; */ typedef npy_longlong __pyx_t_5numpy_long_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":751 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":751 * ctypedef npy_long int_t * ctypedef npy_longlong long_t * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< @@ -877,7 +874,7 @@ typedef npy_longlong __pyx_t_5numpy_long_t; */ typedef npy_longlong __pyx_t_5numpy_longlong_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":753 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":753 * ctypedef npy_longlong longlong_t * * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<< @@ -886,7 +883,7 @@ typedef npy_longlong __pyx_t_5numpy_longlong_t; */ typedef npy_ulong __pyx_t_5numpy_uint_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":754 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":754 * * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<< @@ -895,7 +892,7 @@ typedef npy_ulong __pyx_t_5numpy_uint_t; */ typedef npy_ulonglong __pyx_t_5numpy_ulong_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":755 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":755 * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<< @@ -904,7 +901,7 @@ typedef npy_ulonglong __pyx_t_5numpy_ulong_t; */ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":757 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":757 * ctypedef npy_ulonglong ulonglong_t * * ctypedef npy_intp intp_t # <<<<<<<<<<<<<< @@ -913,7 +910,7 @@ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; */ typedef npy_intp __pyx_t_5numpy_intp_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":758 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":758 * * ctypedef npy_intp intp_t * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<< @@ -922,7 +919,7 @@ typedef npy_intp __pyx_t_5numpy_intp_t; */ typedef npy_uintp __pyx_t_5numpy_uintp_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":760 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":760 * ctypedef npy_uintp uintp_t * * ctypedef npy_double float_t # <<<<<<<<<<<<<< @@ -931,7 +928,7 @@ typedef npy_uintp __pyx_t_5numpy_uintp_t; */ typedef npy_double __pyx_t_5numpy_float_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":761 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":761 * * ctypedef npy_double float_t * ctypedef npy_double double_t # <<<<<<<<<<<<<< @@ -940,7 +937,7 @@ typedef npy_double __pyx_t_5numpy_float_t; */ typedef npy_double __pyx_t_5numpy_double_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":762 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":762 * ctypedef npy_double float_t * ctypedef npy_double double_t * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<< @@ -949,32 +946,41 @@ typedef npy_double __pyx_t_5numpy_double_t; */ typedef npy_longdouble __pyx_t_5numpy_longdouble_t; -/* "ccd/models/robust_fit.pyx":23 +/* "ccd/models/robust_fit.pxd":6 * from cpython cimport bool * - * ctypedef numpy.float64_t STYPE_t # <<<<<<<<<<<<<< - * ctypedef float FTYPE_t - * ctypedef int ITYPE_t + * ctypedef np.float64_t STYPE_t # <<<<<<<<<<<<<< + * ctypedef float FTYPE_t + * ctypedef int ITYPE_t */ typedef __pyx_t_5numpy_float64_t __pyx_t_3ccd_6models_10robust_fit_STYPE_t; -/* "ccd/models/robust_fit.pyx":24 +/* "ccd/models/robust_fit.pxd":7 * - * ctypedef numpy.float64_t STYPE_t - * ctypedef float FTYPE_t # <<<<<<<<<<<<<< - * ctypedef int ITYPE_t - * ctypedef bool BTYPE_t + * ctypedef np.float64_t STYPE_t + * ctypedef float FTYPE_t # <<<<<<<<<<<<<< + * ctypedef int ITYPE_t + * ctypedef bool BTYPE_t */ typedef float __pyx_t_3ccd_6models_10robust_fit_FTYPE_t; -/* "ccd/models/robust_fit.pyx":25 - * ctypedef numpy.float64_t STYPE_t - * ctypedef float FTYPE_t - * ctypedef int ITYPE_t # <<<<<<<<<<<<<< - * ctypedef bool BTYPE_t - * +/* "ccd/models/robust_fit.pxd":8 + * ctypedef np.float64_t STYPE_t + * ctypedef float FTYPE_t + * ctypedef int ITYPE_t # <<<<<<<<<<<<<< + * ctypedef bool BTYPE_t + * ctypedef np.long_t LTYPE_t */ typedef int __pyx_t_3ccd_6models_10robust_fit_ITYPE_t; + +/* "ccd/models/robust_fit.pxd":10 + * ctypedef int ITYPE_t + * ctypedef bool BTYPE_t + * ctypedef np.long_t LTYPE_t # <<<<<<<<<<<<<< + * + * + */ +typedef __pyx_t_5numpy_long_t __pyx_t_3ccd_6models_10robust_fit_LTYPE_t; /* Declarations.proto */ #if CYTHON_CCOMPLEX #ifdef __cplusplus @@ -1003,7 +1009,7 @@ static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(do /*--- Type declarations ---*/ struct __pyx_obj_3ccd_6models_10robust_fit_RLM; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":764 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":764 * ctypedef npy_longdouble longdouble_t * * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<< @@ -1012,7 +1018,7 @@ struct __pyx_obj_3ccd_6models_10robust_fit_RLM; */ typedef npy_cfloat __pyx_t_5numpy_cfloat_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":765 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":765 * * ctypedef npy_cfloat cfloat_t * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<< @@ -1021,7 +1027,7 @@ typedef npy_cfloat __pyx_t_5numpy_cfloat_t; */ typedef npy_cdouble __pyx_t_5numpy_cdouble_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":766 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":766 * ctypedef npy_cfloat cfloat_t * ctypedef npy_cdouble cdouble_t * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<< @@ -1030,7 +1036,7 @@ typedef npy_cdouble __pyx_t_5numpy_cdouble_t; */ typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; -/* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":768 +/* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":768 * ctypedef npy_clongdouble clongdouble_t * * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<< @@ -1042,57 +1048,57 @@ struct __pyx_opt_args_3ccd_6models_10robust_fit_bisquare; struct __pyx_opt_args_3ccd_6models_10robust_fit_mad; struct __pyx_opt_args_3ccd_6models_10robust_fit__check_converge; -/* "ccd/models/robust_fit.pyx":26 - * ctypedef float FTYPE_t - * ctypedef int ITYPE_t - * ctypedef bool BTYPE_t # <<<<<<<<<<<<<< +/* "ccd/models/robust_fit.pxd":9 + * ctypedef float FTYPE_t + * ctypedef int ITYPE_t + * ctypedef bool BTYPE_t # <<<<<<<<<<<<<< + * ctypedef np.long_t LTYPE_t * - * import sklearn */ typedef PyBoolObject *__pyx_t_3ccd_6models_10robust_fit_BTYPE_t; -/* "ccd/models/robust_fit.pyx":34 +/* "ccd/models/robust_fit.pxd":13 * * - * cdef numpy.ndarray[STYPE_t, ndim=1] bisquare(numpy.ndarray[STYPE_t, ndim=1] resid, # <<<<<<<<<<<<<< - * FTYPE_t c=4.685): - * """ + * cpdef np.ndarray[STYPE_t, ndim=1] bisquare(np.ndarray[STYPE_t, ndim=1] resid, # <<<<<<<<<<<<<< + * FTYPE_t c=*) + * */ struct __pyx_opt_args_3ccd_6models_10robust_fit_bisquare { int __pyx_n; __pyx_t_3ccd_6models_10robust_fit_FTYPE_t c; }; -/* "ccd/models/robust_fit.pyx":55 +/* "ccd/models/robust_fit.pxd":16 + * FTYPE_t c=*) * + * cpdef STYPE_t mad(np.ndarray[STYPE_t, ndim=1] x, # <<<<<<<<<<<<<< + * STYPE_t c=*) * - * cdef STYPE_t mad(numpy.ndarray[STYPE_t, ndim=1] x, # <<<<<<<<<<<<<< - * STYPE_t c=0.6745): - * """ */ struct __pyx_opt_args_3ccd_6models_10robust_fit_mad { int __pyx_n; __pyx_t_3ccd_6models_10robust_fit_STYPE_t c; }; -/* "ccd/models/robust_fit.pyx":77 +/* "ccd/models/robust_fit.pxd":19 + * STYPE_t c=*) * - * - * cdef bool _check_converge(numpy.ndarray[STYPE_t, ndim=1] x0, # <<<<<<<<<<<<<< - * numpy.ndarray[STYPE_t, ndim=1] x, - * STYPE_t tol=1e-8): + * cpdef bool _check_converge(np.ndarray[STYPE_t, ndim=1] x0, # <<<<<<<<<<<<<< + * np.ndarray[STYPE_t, ndim=1] x, + * STYPE_t tol=*) */ struct __pyx_opt_args_3ccd_6models_10robust_fit__check_converge { int __pyx_n; __pyx_t_3ccd_6models_10robust_fit_STYPE_t tol; }; -/* "ccd/models/robust_fit.pyx":126 - * # Robust regression - * #class RLM(object): - * cdef class RLM: # <<<<<<<<<<<<<< - * """ Robust Linear Model using Iterative Reweighted Least Squares (RIRLS) +/* "ccd/models/robust_fit.pxd":33 * + * + * cdef class RLM: # <<<<<<<<<<<<<< + * cdef public FTYPE_t tune + * cdef public FTYPE_t scale_constant */ struct __pyx_obj_3ccd_6models_10robust_fit_RLM { PyObject_HEAD @@ -1110,6 +1116,14 @@ struct __pyx_obj_3ccd_6models_10robust_fit_RLM { +/* "ccd/models/robust_fit.py":111 + * + * # Robust regression + * class RLM(object): # <<<<<<<<<<<<<< + * #cdef class RLM: + * """ Robust Linear Model using Iterative Reweighted Least Squares (RIRLS) + */ + struct __pyx_vtabstruct_3ccd_6models_10robust_fit_RLM { PyObject *(*fit)(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *, PyArrayObject *, PyArrayObject *, int __pyx_skip_dispatch); PyArrayObject *(*predict)(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *, PyArrayObject *, int __pyx_skip_dispatch); @@ -1446,9 +1460,6 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject /* PyObjectCallOneArg.proto */ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); -/* ExtTypeTest.proto */ -static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); - /* PyIntBinop.proto */ #if !CYTHON_COMPILING_IN_PYPY static PyObject* __Pyx_PyInt_SubtractCObj(PyObject *op1, PyObject *op2, long intval, int inplace); @@ -1457,6 +1468,9 @@ static PyObject* __Pyx_PyInt_SubtractCObj(PyObject *op1, PyObject *op2, long int (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2)) #endif +/* ExtTypeTest.proto */ +static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); + /* PyThreadStateGet.proto */ #if CYTHON_FAST_THREAD_STATE #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate; @@ -1481,6 +1495,22 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject #define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) #endif +/* RaiseDoubleKeywords.proto */ +static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); + +/* ParseKeywords.proto */ +static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ + PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\ + const char* function_name); + +/* RaiseArgTupleInvalid.proto */ +static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, + Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); + +/* ArgTypeTest.proto */ +static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, + const char *name, int exact); + /* SliceObject.proto */ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice( PyObject* obj, Py_ssize_t cstart, Py_ssize_t cstop, @@ -1514,18 +1544,6 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, int wraparound, int boundscheck); -/* RaiseDoubleKeywords.proto */ -static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); - -/* ParseKeywords.proto */ -static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ - PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\ - const char* function_name); - -/* RaiseArgTupleInvalid.proto */ -static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, - Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); - /* RaiseTooManyValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); @@ -1545,9 +1563,13 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func); #define __Pyx_PyObject_CallNoArg(func) __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL) #endif -/* ArgTypeTest.proto */ -static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, - const char *name, int exact); +/* PyIntBinop.proto */ +#if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, long intval, int inplace); +#else +#define __Pyx_PyInt_AddObjC(op1, op2, intval, inplace)\ + (inplace ? PyNumber_InPlaceAdd(op1, op2) : PyNumber_Add(op1, op2)) +#endif /* GetAttr.proto */ static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *, PyObject *); @@ -1624,6 +1646,63 @@ static int __Pyx_SetVtable(PyObject *dict, void *vtable); /* SetupReduce.proto */ static int __Pyx_setup_reduce(PyObject* type_obj); +/* FetchCommonType.proto */ +static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type); + +/* CythonFunction.proto */ +#define __Pyx_CyFunction_USED 1 +#include +#define __Pyx_CYFUNCTION_STATICMETHOD 0x01 +#define __Pyx_CYFUNCTION_CLASSMETHOD 0x02 +#define __Pyx_CYFUNCTION_CCLASS 0x04 +#define __Pyx_CyFunction_GetClosure(f)\ + (((__pyx_CyFunctionObject *) (f))->func_closure) +#define __Pyx_CyFunction_GetClassObj(f)\ + (((__pyx_CyFunctionObject *) (f))->func_classobj) +#define __Pyx_CyFunction_Defaults(type, f)\ + ((type *)(((__pyx_CyFunctionObject *) (f))->defaults)) +#define __Pyx_CyFunction_SetDefaultsGetter(f, g)\ + ((__pyx_CyFunctionObject *) (f))->defaults_getter = (g) +typedef struct { + PyCFunctionObject func; +#if PY_VERSION_HEX < 0x030500A0 + PyObject *func_weakreflist; +#endif + PyObject *func_dict; + PyObject *func_name; + PyObject *func_qualname; + PyObject *func_doc; + PyObject *func_globals; + PyObject *func_code; + PyObject *func_closure; + PyObject *func_classobj; + void *defaults; + int defaults_pyobjects; + int flags; + PyObject *defaults_tuple; + PyObject *defaults_kwdict; + PyObject *(*defaults_getter)(PyObject *); + PyObject *func_annotations; +} __pyx_CyFunctionObject; +static PyTypeObject *__pyx_CyFunctionType = 0; +#define __Pyx_CyFunction_NewEx(ml, flags, qualname, self, module, globals, code)\ + __Pyx_CyFunction_New(__pyx_CyFunctionType, ml, flags, qualname, self, module, globals, code) +static PyObject *__Pyx_CyFunction_New(PyTypeObject *, PyMethodDef *ml, + int flags, PyObject* qualname, + PyObject *self, + PyObject *module, PyObject *globals, + PyObject* code); +static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *m, + size_t size, + int pyobjects); +static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *m, + PyObject *tuple); +static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m, + PyObject *dict); +static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m, + PyObject *dict); +static int __pyx_CyFunction_init(void); + /* CLineInTraceback.proto */ static int __Pyx_CLineForTraceback(int c_line); @@ -1792,6 +1871,9 @@ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); /* CheckBinaryVersion.proto */ static int __Pyx_check_binary_version(void); +/* FunctionExport.proto */ +static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig); + /* PyIdentifierFromString.proto */ #if !defined(__Pyx_PyIdentifier_FromString) #if PY_MAJOR_VERSION < 3 @@ -1910,11 +1992,11 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, cha /* Module declarations from 'ccd.models.robust_fit' */ static PyTypeObject *__pyx_ptype_3ccd_6models_10robust_fit_RLM = 0; -static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit_bisquare(PyArrayObject *, struct __pyx_opt_args_3ccd_6models_10robust_fit_bisquare *__pyx_optional_args); /*proto*/ -static __pyx_t_3ccd_6models_10robust_fit_STYPE_t __pyx_f_3ccd_6models_10robust_fit_mad(PyArrayObject *, struct __pyx_opt_args_3ccd_6models_10robust_fit_mad *__pyx_optional_args); /*proto*/ -static PyBoolObject *__pyx_f_3ccd_6models_10robust_fit__check_converge(PyArrayObject *, PyArrayObject *, struct __pyx_opt_args_3ccd_6models_10robust_fit__check_converge *__pyx_optional_args); /*proto*/ -static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit__weight_beta(PyArrayObject *, PyArrayObject *, PyArrayObject *); /*proto*/ -static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit__weight_resid(PyArrayObject *, PyArrayObject *, PyArrayObject *); /*proto*/ +static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit_bisquare(PyArrayObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_3ccd_6models_10robust_fit_bisquare *__pyx_optional_args); /*proto*/ +static __pyx_t_3ccd_6models_10robust_fit_STYPE_t __pyx_f_3ccd_6models_10robust_fit_mad(PyArrayObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_3ccd_6models_10robust_fit_mad *__pyx_optional_args); /*proto*/ +static PyBoolObject *__pyx_f_3ccd_6models_10robust_fit__check_converge(PyArrayObject *, PyArrayObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_3ccd_6models_10robust_fit__check_converge *__pyx_optional_args); /*proto*/ +static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit__weight_beta(PyArrayObject *, PyArrayObject *, PyArrayObject *, int __pyx_skip_dispatch); /*proto*/ +static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit__weight_resid(PyArrayObject *, PyArrayObject *, PyArrayObject *, int __pyx_skip_dispatch); /*proto*/ static PyObject *__pyx_f_3ccd_6models_10robust_fit___pyx_unpickle_RLM__set_state(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *, PyObject *); /*proto*/ static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_10robust_fit_STYPE_t = { "STYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_10robust_fit_STYPE_t), { 0 }, 0, 'R', 0, 0 }; #define __Pyx_MODULE_NAME "ccd.models.robust_fit" @@ -1926,8 +2008,12 @@ static PyObject *__pyx_builtin_range; static PyObject *__pyx_builtin_RuntimeError; static PyObject *__pyx_builtin_ImportError; static const char __pyx_k_X[] = "X"; +static const char __pyx_k_c[] = "c"; +static const char __pyx_k_w[] = "w"; +static const char __pyx_k_x[] = "x"; static const char __pyx_k_y[] = "y"; static const char __pyx_k_qr[] = "qr"; +static const char __pyx_k_x0[] = "x0"; static const char __pyx_k_EPS[] = "EPS"; static const char __pyx_k_abs[] = "abs"; static const char __pyx_k_any[] = "any"; @@ -1935,28 +2021,32 @@ static const char __pyx_k_dot[] = "dot"; static const char __pyx_k_eps[] = "eps"; static const char __pyx_k_fit[] = "fit"; static const char __pyx_k_inv[] = "inv"; +static const char __pyx_k_mad[] = "mad"; static const char __pyx_k_new[] = "__new__"; static const char __pyx_k_std[] = "std"; static const char __pyx_k_sum[] = "sum"; static const char __pyx_k_tol[] = "tol"; static const char __pyx_k_axis[] = "axis"; +static const char __pyx_k_beta[] = "beta"; static const char __pyx_k_copy[] = "copy"; static const char __pyx_k_dict[] = "__dict__"; static const char __pyx_k_fabs[] = "fabs"; static const char __pyx_k_main[] = "__main__"; -static const char __pyx_k_name[] = "__name__"; static const char __pyx_k_ones[] = "ones"; +static const char __pyx_k_self[] = "self"; static const char __pyx_k_sort[] = "sort"; static const char __pyx_k_sqrt[] = "sqrt"; static const char __pyx_k_test[] = "__test__"; static const char __pyx_k_tune[] = "tune"; -static const char __pyx_k_class[] = "__class__"; static const char __pyx_k_finfo[] = "finfo"; static const char __pyx_k_float[] = "float"; static const char __pyx_k_lstsq[] = "lstsq"; static const char __pyx_k_numpy[] = "numpy"; static const char __pyx_k_range[] = "range"; +static const char __pyx_k_resid[] = "resid"; static const char __pyx_k_scipy[] = "scipy"; +static const char __pyx_k_state[] = "state"; +static const char __pyx_k_dict_2[] = "_dict"; static const char __pyx_k_divide[] = "divide"; static const char __pyx_k_import[] = "__import__"; static const char __pyx_k_linalg[] = "linalg"; @@ -1964,31 +2054,38 @@ static const char __pyx_k_median[] = "median"; static const char __pyx_k_pickle[] = "pickle"; static const char __pyx_k_result[] = "result"; static const char __pyx_k_update[] = "update"; +static const char __pyx_k_RLM_fit[] = "RLM.fit"; static const char __pyx_k_maxiter[] = "maxiter"; static const char __pyx_k_minimum[] = "minimum"; static const char __pyx_k_predict[] = "predict"; static const char __pyx_k_sklearn[] = "sklearn"; +static const char __pyx_k_bisquare[] = "bisquare"; static const char __pyx_k_pyx_type[] = "__pyx_type"; -static const char __pyx_k_array_str[] = "array_str"; static const char __pyx_k_ones_like[] = "ones_like"; -static const char __pyx_k_precision[] = "precision"; static const char __pyx_k_pyx_state[] = "__pyx_state"; static const char __pyx_k_ValueError[] = "ValueError"; static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__"; static const char __pyx_k_ImportError[] = "ImportError"; static const char __pyx_k_PickleError[] = "PickleError"; +static const char __pyx_k_RLM_predict[] = "RLM.predict"; +static const char __pyx_k_weight_beta[] = "_weight_beta"; static const char __pyx_k_RuntimeError[] = "RuntimeError"; static const char __pyx_k_pyx_checksum[] = "__pyx_checksum"; static const char __pyx_k_stringsource[] = "stringsource"; static const char __pyx_k_update_scale[] = "update_scale"; +static const char __pyx_k_use_setstate[] = "use_setstate"; +static const char __pyx_k_weight_resid[] = "_weight_resid"; static const char __pyx_k_reduce_cython[] = "__reduce_cython__"; +static const char __pyx_k_check_converge[] = "_check_converge"; static const char __pyx_k_scale_constant[] = "scale_constant"; static const char __pyx_k_setstate_cython[] = "__setstate_cython__"; static const char __pyx_k_pyx_unpickle_RLM[] = "__pyx_unpickle_RLM"; static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; +static const char __pyx_k_RLM___reduce_cython[] = "RLM.__reduce_cython__"; +static const char __pyx_k_RLM___setstate_cython[] = "RLM.__setstate_cython__"; static const char __pyx_k_ccd_models_robust_fit[] = "ccd.models.robust_fit"; +static const char __pyx_k_ccd_models_robust_fit_py[] = "ccd/models/robust_fit.py"; static const char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; -static const char __pyx_k_s_Coefficients_s_Intercept_5f[] = "%s:\n * Coefficients: %s\n * Intercept = %.5f\n"; static const char __pyx_k_Perform_an_iteratively_re_weigh[] = "\nPerform an iteratively re-weighted least squares 'robust regression'. Basically\na clone of `statsmodels.robust.robust_linear_model.RLM` without all the lovely,\nbut costly, creature comforts.\n\nReference:\n http://statsmodels.sourceforge.net/stable/rlm.html\n http://cran.r-project.org/web/packages/robustreg/index.html\n http://cran.r-project.org/doc/contrib/Fox-Companion/appendix-robust-regression.pdf\n\nRun this file to test performance gains. Implementation is ~3x faster than\nstatsmodels and can reach ~4x faster if Numba is available to accelerate.\n\n"; static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import"; static const char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; @@ -2005,18 +2102,26 @@ static PyObject *__pyx_n_s_ImportError; static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0x78; static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor; static PyObject *__pyx_n_s_PickleError; +static PyObject *__pyx_n_s_RLM___reduce_cython; +static PyObject *__pyx_n_s_RLM___setstate_cython; +static PyObject *__pyx_n_s_RLM_fit; +static PyObject *__pyx_n_s_RLM_predict; static PyObject *__pyx_n_s_RuntimeError; static PyObject *__pyx_n_s_ValueError; static PyObject *__pyx_n_s_X; static PyObject *__pyx_n_s_abs; static PyObject *__pyx_n_s_any; -static PyObject *__pyx_n_s_array_str; static PyObject *__pyx_n_s_axis; +static PyObject *__pyx_n_s_beta; +static PyObject *__pyx_n_s_bisquare; +static PyObject *__pyx_n_s_c; static PyObject *__pyx_n_s_ccd_models_robust_fit; -static PyObject *__pyx_n_s_class; +static PyObject *__pyx_kp_s_ccd_models_robust_fit_py; +static PyObject *__pyx_n_s_check_converge; static PyObject *__pyx_n_s_cline_in_traceback; static PyObject *__pyx_n_s_copy; static PyObject *__pyx_n_s_dict; +static PyObject *__pyx_n_s_dict_2; static PyObject *__pyx_n_s_divide; static PyObject *__pyx_n_s_dot; static PyObject *__pyx_n_s_eps; @@ -2028,11 +2133,11 @@ static PyObject *__pyx_n_s_import; static PyObject *__pyx_n_s_inv; static PyObject *__pyx_n_s_linalg; static PyObject *__pyx_n_s_lstsq; +static PyObject *__pyx_n_s_mad; static PyObject *__pyx_n_s_main; static PyObject *__pyx_n_s_maxiter; static PyObject *__pyx_n_s_median; static PyObject *__pyx_n_s_minimum; -static PyObject *__pyx_n_s_name; static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou; static PyObject *__pyx_n_s_new; @@ -2042,7 +2147,6 @@ static PyObject *__pyx_kp_s_numpy_core_umath_failed_to_impor; static PyObject *__pyx_n_s_ones; static PyObject *__pyx_n_s_ones_like; static PyObject *__pyx_n_s_pickle; -static PyObject *__pyx_n_s_precision; static PyObject *__pyx_n_s_predict; static PyObject *__pyx_n_s_pyx_checksum; static PyObject *__pyx_n_s_pyx_state; @@ -2052,14 +2156,16 @@ static PyObject *__pyx_n_s_pyx_vtable; static PyObject *__pyx_n_s_qr; static PyObject *__pyx_n_s_range; static PyObject *__pyx_n_s_reduce_cython; +static PyObject *__pyx_n_s_resid; static PyObject *__pyx_n_s_result; -static PyObject *__pyx_kp_s_s_Coefficients_s_Intercept_5f; static PyObject *__pyx_n_s_scale_constant; static PyObject *__pyx_n_s_scipy; +static PyObject *__pyx_n_s_self; static PyObject *__pyx_n_s_setstate_cython; static PyObject *__pyx_n_s_sklearn; static PyObject *__pyx_n_s_sort; static PyObject *__pyx_n_s_sqrt; +static PyObject *__pyx_n_s_state; static PyObject *__pyx_n_s_std; static PyObject *__pyx_kp_s_stringsource; static PyObject *__pyx_n_s_sum; @@ -2069,11 +2175,21 @@ static PyObject *__pyx_n_s_tune; static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd; static PyObject *__pyx_n_s_update; static PyObject *__pyx_n_s_update_scale; +static PyObject *__pyx_n_s_use_setstate; +static PyObject *__pyx_n_s_w; +static PyObject *__pyx_n_s_weight_beta; +static PyObject *__pyx_n_s_weight_resid; +static PyObject *__pyx_n_s_x; +static PyObject *__pyx_n_s_x0; static PyObject *__pyx_n_s_y; +static PyObject *__pyx_pf_3ccd_6models_10robust_fit_bisquare(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_resid, __pyx_t_3ccd_6models_10robust_fit_FTYPE_t __pyx_v_c); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_10robust_fit_2mad(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_x, __pyx_t_3ccd_6models_10robust_fit_STYPE_t __pyx_v_c); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_10robust_fit_4_check_converge(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_x0, PyArrayObject *__pyx_v_x, __pyx_t_3ccd_6models_10robust_fit_STYPE_t __pyx_v_tol); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_10robust_fit_6_weight_beta(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_X, PyArrayObject *__pyx_v_y, PyArrayObject *__pyx_v_w); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_10robust_fit_8_weight_resid(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_X, PyArrayObject *__pyx_v_y, PyArrayObject *__pyx_v_beta); /* proto */ static int __pyx_pf_3ccd_6models_10robust_fit_3RLM___init__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyObject *__pyx_v_tune, PyObject *__pyx_v_scale_constant, PyObject *__pyx_v_update_scale, PyObject *__pyx_v_maxiter, PyObject *__pyx_v_tol); /* proto */ static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_2fit(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyArrayObject *__pyx_v_X, PyArrayObject *__pyx_v_y); /* proto */ static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_4predict(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyArrayObject *__pyx_v_X); /* proto */ -static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_6__str__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_4tune___get__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self); /* proto */ static int __pyx_pf_3ccd_6models_10robust_fit_3RLM_4tune_2__set__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_14scale_constant___get__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self); /* proto */ @@ -2095,9 +2211,9 @@ static int __pyx_pf_3ccd_6models_10robust_fit_3RLM_5scale_2__set__(struct __pyx_ static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_7weights___get__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self); /* proto */ static int __pyx_pf_3ccd_6models_10robust_fit_3RLM_7weights_2__set__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_3ccd_6models_10robust_fit_3RLM_7weights_4__del__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_8__reduce_cython__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_10__setstate_cython__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ -static PyObject *__pyx_pf_3ccd_6models_10robust_fit___pyx_unpickle_RLM(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_6__reduce_cython__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_8__setstate_cython__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_10robust_fit_10__pyx_unpickle_RLM(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ static PyObject *__pyx_tp_new_3ccd_6models_10robust_fit_RLM(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ @@ -2111,41 +2227,58 @@ static PyObject *__pyx_int_2; static PyObject *__pyx_int_4; static PyObject *__pyx_int_50; static PyObject *__pyx_int_125935122; -static PyObject *__pyx_slice_; -static PyObject *__pyx_slice__2; -static PyObject *__pyx_slice__4; -static PyObject *__pyx_slice__5; -static PyObject *__pyx_slice__7; -static PyObject *__pyx_slice__8; -static PyObject *__pyx_tuple__3; -static PyObject *__pyx_tuple__6; -static PyObject *__pyx_tuple__9; -static PyObject *__pyx_tuple__11; -static PyObject *__pyx_tuple__12; +static PyObject *__pyx_codeobj_; +static PyObject *__pyx_slice__3; +static PyObject *__pyx_slice__6; +static PyObject *__pyx_tuple__7; +static PyObject *__pyx_slice__11; +static PyObject *__pyx_slice__12; +static PyObject *__pyx_slice__14; +static PyObject *__pyx_slice__15; static PyObject *__pyx_tuple__13; -static PyObject *__pyx_tuple__14; -static PyObject *__pyx_tuple__15; static PyObject *__pyx_tuple__16; -static PyObject *__pyx_tuple__17; -static PyObject *__pyx_tuple__18; -static PyObject *__pyx_tuple__19; static PyObject *__pyx_tuple__20; static PyObject *__pyx_tuple__21; +static PyObject *__pyx_tuple__22; +static PyObject *__pyx_tuple__23; +static PyObject *__pyx_tuple__24; +static PyObject *__pyx_tuple__25; +static PyObject *__pyx_tuple__26; +static PyObject *__pyx_tuple__27; +static PyObject *__pyx_tuple__28; +static PyObject *__pyx_tuple__29; +static PyObject *__pyx_tuple__30; +static PyObject *__pyx_tuple__31; +static PyObject *__pyx_tuple__32; +static PyObject *__pyx_tuple__33; +static PyObject *__pyx_tuple__34; +static PyObject *__pyx_tuple__35; +static PyObject *__pyx_tuple__36; +static PyObject *__pyx_tuple__37; +static PyObject *__pyx_tuple__38; +static PyObject *__pyx_tuple__39; +static PyObject *__pyx_codeobj__2; +static PyObject *__pyx_codeobj__4; +static PyObject *__pyx_codeobj__5; +static PyObject *__pyx_codeobj__8; +static PyObject *__pyx_codeobj__9; static PyObject *__pyx_codeobj__10; +static PyObject *__pyx_codeobj__17; +static PyObject *__pyx_codeobj__18; +static PyObject *__pyx_codeobj__19; -/* "ccd/models/robust_fit.pyx":34 +/* "ccd/models/robust_fit.py":26 * * - * cdef numpy.ndarray[STYPE_t, ndim=1] bisquare(numpy.ndarray[STYPE_t, ndim=1] resid, # <<<<<<<<<<<<<< - * FTYPE_t c=4.685): + * def bisquare(resid, c=4.685): # <<<<<<<<<<<<<< * """ + * Returns weighting for each residual using bisquare weight function */ -static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit_bisquare(PyArrayObject *__pyx_v_resid, struct __pyx_opt_args_3ccd_6models_10robust_fit_bisquare *__pyx_optional_args) { +static PyObject *__pyx_pw_3ccd_6models_10robust_fit_1bisquare(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ +static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit_bisquare(PyArrayObject *__pyx_v_resid, CYTHON_UNUSED int __pyx_skip_dispatch, struct __pyx_opt_args_3ccd_6models_10robust_fit_bisquare *__pyx_optional_args) { __pyx_t_3ccd_6models_10robust_fit_FTYPE_t __pyx_v_c = ((__pyx_t_3ccd_6models_10robust_fit_FTYPE_t)4.685); - PyArrayObject *__pyx_v_abs_resid = 0; - __Pyx_LocalBuf_ND __pyx_pybuffernd_abs_resid; - __Pyx_Buffer __pyx_pybuffer_abs_resid; + PyObject *__pyx_v_abs_resid = NULL; __Pyx_LocalBuf_ND __pyx_pybuffernd_resid; __Pyx_Buffer __pyx_pybuffer_resid; PyArrayObject *__pyx_r = NULL; @@ -2155,38 +2288,34 @@ static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit_bisquare(PyArrayObject * PyObject *__pyx_t_2 = NULL; PyObject *__pyx_t_3 = NULL; PyObject *__pyx_t_4 = NULL; - PyArrayObject *__pyx_t_5 = NULL; + __Pyx_TraceFrameInit(__pyx_codeobj_) __Pyx_RefNannySetupContext("bisquare", 0); - __Pyx_TraceCall("bisquare", __pyx_f[0], 34, 0, __PYX_ERR(0, 34, __pyx_L1_error)); + __Pyx_TraceCall("bisquare", __pyx_f[0], 26, 0, __PYX_ERR(0, 26, __pyx_L1_error)); if (__pyx_optional_args) { if (__pyx_optional_args->__pyx_n > 0) { __pyx_v_c = __pyx_optional_args->c; } } - __pyx_pybuffer_abs_resid.pybuffer.buf = NULL; - __pyx_pybuffer_abs_resid.refcount = 0; - __pyx_pybuffernd_abs_resid.data = NULL; - 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"ccd/models/robust_fit.pyx":50 + /* "ccd/models/robust_fit.py":41 * """ * # Weight where abs(resid) < c; otherwise 0 - * cdef numpy.ndarray[STYPE_t, ndim=1] abs_resid = numpy.abs(resid) # <<<<<<<<<<<<<< + * abs_resid = numpy.abs(resid) # <<<<<<<<<<<<<< * * return (abs_resid < c) * (1 - (resid / c) ** 2) ** 2 */ - __pyx_t_2 = __Pyx_GetModuleGlobalName(__pyx_n_s_numpy); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 50, __pyx_L1_error) + __pyx_t_2 = __Pyx_GetModuleGlobalName(__pyx_n_s_numpy); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 41, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_2); - __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_abs); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 50, __pyx_L1_error) + __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_abs); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 41, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; __pyx_t_2 = NULL; @@ -2200,13 +2329,13 @@ static PyArrayObject 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__pyx_t_1 = __pyx_t_2; __pyx_L6_bool_binop_done:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":216 * copy_shape = 0 * * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) # <<<<<<<<<<<<<< @@ -7122,20 +7666,20 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":218 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":218 * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): * raise ValueError(u"ndarray is not C contiguous") # <<<<<<<<<<<<<< * * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) */ - __pyx_t_3 = 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<<<<<<<<<<<<<< @@ -7209,7 +7753,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->buf = PyArray_DATA(__pyx_v_self); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":225 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":225 * * info.buf = PyArray_DATA(self) * info.ndim = ndim # <<<<<<<<<<<<<< @@ -7218,7 +7762,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->ndim = __pyx_v_ndim; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 * info.buf = PyArray_DATA(self) * info.ndim = ndim * if copy_shape: # <<<<<<<<<<<<<< @@ -7228,7 +7772,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = (__pyx_v_copy_shape != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":229 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":229 * # Allocate new buffer for strides and shape info. * # This is allocated as one block, strides first. * info.strides = stdlib.malloc(sizeof(Py_ssize_t) * ndim * 2) # <<<<<<<<<<<<<< @@ -7237,7 +7781,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->strides = ((Py_ssize_t *)malloc((((sizeof(Py_ssize_t)) * ((size_t)__pyx_v_ndim)) * 2))); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":230 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":230 * # This is allocated as one block, strides first. * info.strides = stdlib.malloc(sizeof(Py_ssize_t) * ndim * 2) * info.shape = info.strides + ndim # <<<<<<<<<<<<<< @@ -7246,7 +7790,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->shape = (__pyx_v_info->strides + __pyx_v_ndim); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":231 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":231 * info.strides = stdlib.malloc(sizeof(Py_ssize_t) * ndim * 2) * info.shape = info.strides + ndim * for i in range(ndim): # <<<<<<<<<<<<<< @@ -7257,7 +7801,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { __pyx_v_i = __pyx_t_5; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":232 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":232 * info.shape = info.strides + ndim * for i in range(ndim): * info.strides[i] = PyArray_STRIDES(self)[i] # <<<<<<<<<<<<<< @@ -7266,7 +7810,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ (__pyx_v_info->strides[__pyx_v_i]) = (PyArray_STRIDES(__pyx_v_self)[__pyx_v_i]); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":233 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":233 * for i in range(ndim): * info.strides[i] = PyArray_STRIDES(self)[i] * info.shape[i] = PyArray_DIMS(self)[i] # <<<<<<<<<<<<<< @@ -7276,7 +7820,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P (__pyx_v_info->shape[__pyx_v_i]) = (PyArray_DIMS(__pyx_v_self)[__pyx_v_i]); } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":226 * info.buf = PyArray_DATA(self) * info.ndim = ndim * if copy_shape: # <<<<<<<<<<<<<< @@ -7286,7 +7830,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P goto __pyx_L11; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":235 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":235 * info.shape[i] = PyArray_DIMS(self)[i] * else: * info.strides = PyArray_STRIDES(self) # <<<<<<<<<<<<<< @@ -7296,7 +7840,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P /*else*/ { __pyx_v_info->strides = ((Py_ssize_t *)PyArray_STRIDES(__pyx_v_self)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":236 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":236 * else: * info.strides = PyArray_STRIDES(self) * info.shape = PyArray_DIMS(self) # <<<<<<<<<<<<<< @@ -7307,7 +7851,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P } __pyx_L11:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":237 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":237 * info.strides = PyArray_STRIDES(self) * info.shape = PyArray_DIMS(self) * info.suboffsets = NULL # <<<<<<<<<<<<<< @@ -7316,7 +7860,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->suboffsets = NULL; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":238 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":238 * info.shape = PyArray_DIMS(self) * info.suboffsets = NULL * info.itemsize = PyArray_ITEMSIZE(self) # <<<<<<<<<<<<<< @@ -7325,7 +7869,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->itemsize = PyArray_ITEMSIZE(__pyx_v_self); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":239 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":239 * info.suboffsets = NULL * info.itemsize = PyArray_ITEMSIZE(self) * info.readonly = not PyArray_ISWRITEABLE(self) # <<<<<<<<<<<<<< @@ -7334,7 +7878,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_info->readonly = (!(PyArray_ISWRITEABLE(__pyx_v_self) != 0)); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":242 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":242 * * cdef int t * cdef char* f = NULL # <<<<<<<<<<<<<< @@ -7343,7 +7887,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_f = NULL; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":243 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":243 * cdef int t * cdef char* f = NULL * cdef dtype descr = self.descr # <<<<<<<<<<<<<< @@ -7355,7 +7899,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_descr = ((PyArray_Descr *)__pyx_t_3); __pyx_t_3 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":246 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":246 * cdef int offset * * cdef bint hasfields = PyDataType_HASFIELDS(descr) # <<<<<<<<<<<<<< @@ -7364,7 +7908,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_v_hasfields = PyDataType_HASFIELDS(__pyx_v_descr); - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 * cdef bint hasfields = PyDataType_HASFIELDS(descr) * * if not hasfields and not copy_shape: # <<<<<<<<<<<<<< @@ -7382,7 +7926,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_L15_bool_binop_done:; if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":250 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":250 * if not hasfields and not copy_shape: * # do not call releasebuffer * info.obj = None # <<<<<<<<<<<<<< @@ -7395,7 +7939,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = Py_None; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":248 * cdef bint hasfields = PyDataType_HASFIELDS(descr) * * if not hasfields and not copy_shape: # <<<<<<<<<<<<<< @@ -7405,7 +7949,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P goto __pyx_L14; } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":253 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":253 * else: * # need to call releasebuffer * info.obj = self # <<<<<<<<<<<<<< @@ -7421,7 +7965,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P } __pyx_L14:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":255 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":255 * info.obj = self * * if not hasfields: # <<<<<<<<<<<<<< @@ -7431,7 +7975,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = ((!(__pyx_v_hasfields != 0)) != 0); if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":256 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":256 * * if not hasfields: * t = descr.type_num # <<<<<<<<<<<<<< @@ -7441,7 +7985,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_4 = __pyx_v_descr->type_num; __pyx_v_t = __pyx_t_4; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 * if not hasfields: * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -7461,7 +8005,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P } __pyx_L20_next_or:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":258 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":258 * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or * (descr.byteorder == c'<' and not little_endian)): # <<<<<<<<<<<<<< @@ -7478,7 +8022,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_t_1 = __pyx_t_2; __pyx_L19_bool_binop_done:; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 * if not hasfields: * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -7487,20 +8031,20 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ if (__pyx_t_1) { - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":259 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":259 * if ((descr.byteorder == c'>' and little_endian) or * (descr.byteorder == c'<' and not little_endian)): * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< * if t == NPY_BYTE: f = "b" * elif t == NPY_UBYTE: f = "B" */ - __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__13, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 259, __pyx_L1_error) + __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__22, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(3, 259, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_3); __Pyx_Raise(__pyx_t_3, 0, 0, 0); __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __PYX_ERR(2, 259, __pyx_L1_error) + __PYX_ERR(3, 259, __pyx_L1_error) - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":257 * if not hasfields: * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< @@ -7509,7 +8053,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ } - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":260 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":260 * (descr.byteorder == c'<' and not little_endian)): * raise ValueError(u"Non-native byte order not supported") * if t == NPY_BYTE: f = "b" # <<<<<<<<<<<<<< @@ -7521,7 +8065,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"b"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":261 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":261 * raise ValueError(u"Non-native byte order not supported") * if t == NPY_BYTE: f = "b" * elif t == NPY_UBYTE: f = "B" # <<<<<<<<<<<<<< @@ -7532,7 +8076,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"B"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":262 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":262 * if t == NPY_BYTE: f = "b" * elif t == NPY_UBYTE: f = "B" * elif t == NPY_SHORT: f = "h" # <<<<<<<<<<<<<< @@ -7543,7 +8087,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"h"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":263 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":263 * elif t == NPY_UBYTE: f = "B" * elif t == NPY_SHORT: f = "h" * elif t == NPY_USHORT: f = "H" # <<<<<<<<<<<<<< @@ -7554,7 +8098,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"H"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":264 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":264 * elif t == NPY_SHORT: f = "h" * elif t == NPY_USHORT: f = "H" * elif t == NPY_INT: f = "i" # <<<<<<<<<<<<<< @@ -7565,7 +8109,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"i"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":265 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":265 * elif t == NPY_USHORT: f = "H" * elif t == NPY_INT: f = "i" * elif t == NPY_UINT: f = "I" # <<<<<<<<<<<<<< @@ -7576,7 +8120,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"I"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":266 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":266 * elif t == NPY_INT: f = "i" * elif t == NPY_UINT: f = "I" * elif t == NPY_LONG: f = "l" # <<<<<<<<<<<<<< @@ -7587,7 +8131,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"l"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":267 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":267 * elif t == NPY_UINT: f = "I" * elif t == NPY_LONG: f = "l" * elif t == NPY_ULONG: f = "L" # <<<<<<<<<<<<<< @@ -7598,7 +8142,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"L"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":268 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":268 * elif t == NPY_LONG: f = "l" * elif t == NPY_ULONG: f = "L" * elif t == NPY_LONGLONG: f = "q" # <<<<<<<<<<<<<< @@ -7609,7 +8153,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"q"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":269 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":269 * elif t == NPY_ULONG: f = "L" * elif t == NPY_LONGLONG: f = "q" * elif t == NPY_ULONGLONG: f = "Q" # <<<<<<<<<<<<<< @@ -7620,7 +8164,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Q"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":270 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":270 * elif t == NPY_LONGLONG: f = "q" * elif t == NPY_ULONGLONG: f = "Q" * elif t == NPY_FLOAT: f = "f" # <<<<<<<<<<<<<< @@ -7631,7 +8175,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"f"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":271 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":271 * elif t == NPY_ULONGLONG: f = "Q" * elif t == NPY_FLOAT: f = "f" * elif t == NPY_DOUBLE: f = "d" # <<<<<<<<<<<<<< @@ -7642,7 +8186,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"d"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":272 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":272 * elif t == NPY_FLOAT: f = "f" * elif t == NPY_DOUBLE: f = "d" * elif t == NPY_LONGDOUBLE: f = "g" # <<<<<<<<<<<<<< @@ -7653,7 +8197,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"g"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":273 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":273 * elif t == NPY_DOUBLE: f = "d" * elif t == NPY_LONGDOUBLE: f = "g" * elif t == NPY_CFLOAT: f = "Zf" # <<<<<<<<<<<<<< @@ -7664,7 +8208,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Zf"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":274 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":274 * elif t == NPY_LONGDOUBLE: f = "g" * elif t == NPY_CFLOAT: f = "Zf" * elif t == NPY_CDOUBLE: f = "Zd" # <<<<<<<<<<<<<< @@ -7675,7 +8219,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Zd"); break; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":275 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":275 * elif t == NPY_CFLOAT: f = "Zf" * elif t == NPY_CDOUBLE: f = "Zd" * elif t == NPY_CLONGDOUBLE: f = "Zg" # <<<<<<<<<<<<<< @@ -7686,7 +8230,7 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P __pyx_v_f = ((char *)"Zg"); break; - /* 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Basically @@ -10285,7 +11059,7 @@ PyMODINIT_FUNC PyInit_robust_fit(void) if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_2) < 0) __PYX_ERR(0, 1, __pyx_L1_error) __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; - /* "../../miniconda2/envs/foo/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":997 + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":997 * raise ImportError("numpy.core.umath failed to import") * * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<< @@ -11233,19 +12007,6 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec } #endif -/* ExtTypeTest */ - static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { - if (unlikely(!type)) { - PyErr_SetString(PyExc_SystemError, "Missing type object"); - return 0; - } - if (likely(PyObject_TypeCheck(obj, type))) - return 1; - PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", - Py_TYPE(obj)->tp_name, type->tp_name); - return 0; -} - /* PyIntBinop */ #if !CYTHON_COMPILING_IN_PYPY static PyObject* __Pyx_PyInt_SubtractCObj(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { @@ -11358,33 +12119,215 @@ static PyObject* __Pyx_PyInt_SubtractCObj(PyObject *op1, PyObject *op2, CYTHON_U PyFPE_END_PROTECT(result) return PyFloat_FromDouble(result); } - return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2); + return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2); +} +#endif + +/* ExtTypeTest */ + static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + if (likely(PyObject_TypeCheck(obj, type))) + return 1; + PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", + Py_TYPE(obj)->tp_name, type->tp_name); + return 0; +} + +/* PyErrFetchRestore */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + tmp_type = tstate->curexc_type; + tmp_value = tstate->curexc_value; + tmp_tb = tstate->curexc_traceback; + tstate->curexc_type = type; + tstate->curexc_value = value; + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +} +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { + *type = tstate->curexc_type; + *value = tstate->curexc_value; + *tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +} +#endif + +/* RaiseDoubleKeywords */ + static void __Pyx_RaiseDoubleKeywordsError( + const char* func_name, + PyObject* kw_name) +{ + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION >= 3 + "%s() got multiple values for keyword argument '%U'", func_name, kw_name); + #else + "%s() got multiple values for keyword argument '%s'", func_name, + PyString_AsString(kw_name)); + #endif +} + +/* ParseKeywords */ + static int __Pyx_ParseOptionalKeywords( + PyObject *kwds, + PyObject **argnames[], + PyObject *kwds2, + PyObject *values[], + Py_ssize_t num_pos_args, + const char* function_name) +{ + PyObject *key = 0, *value = 0; + Py_ssize_t pos = 0; + PyObject*** name; + PyObject*** first_kw_arg = argnames + num_pos_args; + while (PyDict_Next(kwds, &pos, &key, &value)) { + name = first_kw_arg; + while (*name && (**name != key)) name++; + if (*name) { + values[name-argnames] = value; + continue; + } + name = first_kw_arg; + #if PY_MAJOR_VERSION < 3 + if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) { + while (*name) { + if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) + && _PyString_Eq(**name, key)) { + values[name-argnames] = value; + break; + } + name++; + } + if (*name) continue; + else { + PyObject*** argname = argnames; + while (argname != first_kw_arg) { + if ((**argname == key) || ( + (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) + && _PyString_Eq(**argname, key))) { + goto arg_passed_twice; + } + argname++; + } + } + } else + #endif + if (likely(PyUnicode_Check(key))) { + while (*name) { + int cmp = (**name == key) ? 0 : + #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 + (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : + #endif + PyUnicode_Compare(**name, key); + if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; + if (cmp == 0) { + values[name-argnames] = value; + break; + } + name++; + } + if (*name) continue; + else { + PyObject*** argname = argnames; + while (argname != first_kw_arg) { + int cmp = (**argname == key) ? 0 : + #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 + (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : + #endif + PyUnicode_Compare(**argname, key); + if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; + if (cmp == 0) goto arg_passed_twice; + argname++; + } + } + } else + goto invalid_keyword_type; + if (kwds2) { + if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; + } else { + goto invalid_keyword; + } + } + return 0; +arg_passed_twice: + __Pyx_RaiseDoubleKeywordsError(function_name, key); + goto bad; +invalid_keyword_type: + PyErr_Format(PyExc_TypeError, + "%.200s() keywords must be strings", function_name); + goto bad; +invalid_keyword: + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION < 3 + "%.200s() got an unexpected keyword argument '%.200s'", + function_name, PyString_AsString(key)); + #else + "%s() got an unexpected keyword argument '%U'", + function_name, key); + #endif +bad: + return -1; +} + +/* RaiseArgTupleInvalid */ + static void __Pyx_RaiseArgtupleInvalid( + const char* func_name, + int exact, + Py_ssize_t num_min, + Py_ssize_t num_max, + Py_ssize_t num_found) +{ + Py_ssize_t num_expected; + const char *more_or_less; + if (num_found < num_min) { + num_expected = num_min; + more_or_less = "at least"; + } else { + num_expected = num_max; + more_or_less = "at most"; + } + if (exact) { + more_or_less = "exactly"; + } + PyErr_Format(PyExc_TypeError, + "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", + func_name, more_or_less, num_expected, + (num_expected == 1) ? "" : "s", num_found); } -#endif -/* PyErrFetchRestore */ - #if CYTHON_FAST_THREAD_STATE -static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { - PyObject *tmp_type, *tmp_value, *tmp_tb; - tmp_type = tstate->curexc_type; - tmp_value = tstate->curexc_value; - tmp_tb = tstate->curexc_traceback; - tstate->curexc_type = type; - tstate->curexc_value = value; - tstate->curexc_traceback = tb; - Py_XDECREF(tmp_type); - Py_XDECREF(tmp_value); - Py_XDECREF(tmp_tb); +/* ArgTypeTest */ + static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { + PyErr_Format(PyExc_TypeError, + "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", + name, type->tp_name, Py_TYPE(obj)->tp_name); } -static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { - *type = tstate->curexc_type; - *value = tstate->curexc_value; - *tb = tstate->curexc_traceback; - tstate->curexc_type = 0; - tstate->curexc_value = 0; - tstate->curexc_traceback = 0; +static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, + const char *name, int exact) +{ + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + if (none_allowed && obj == Py_None) return 1; + else if (exact) { + if (likely(Py_TYPE(obj) == type)) return 1; + #if PY_MAJOR_VERSION == 2 + else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; + #endif + } + else { + if (likely(PyObject_TypeCheck(obj, type))) return 1; + } + __Pyx_RaiseArgumentTypeInvalid(name, obj, type); + return 0; } -#endif /* SliceObject */ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice(PyObject* obj, @@ -11612,148 +12555,6 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); } -/* RaiseDoubleKeywords */ - static void __Pyx_RaiseDoubleKeywordsError( - const char* func_name, - PyObject* kw_name) -{ - PyErr_Format(PyExc_TypeError, - #if PY_MAJOR_VERSION >= 3 - "%s() got multiple values for keyword argument '%U'", func_name, kw_name); - #else - "%s() got multiple values for keyword argument '%s'", func_name, - PyString_AsString(kw_name)); - #endif -} - -/* ParseKeywords */ - static int __Pyx_ParseOptionalKeywords( - PyObject *kwds, - PyObject **argnames[], - PyObject *kwds2, - PyObject *values[], - Py_ssize_t num_pos_args, - const char* function_name) -{ - PyObject *key = 0, *value = 0; - Py_ssize_t pos = 0; - PyObject*** name; - PyObject*** first_kw_arg = argnames + num_pos_args; - while (PyDict_Next(kwds, &pos, &key, &value)) { - name = first_kw_arg; - while (*name && (**name != key)) name++; - if (*name) { - values[name-argnames] = value; - continue; - } - name = first_kw_arg; - #if PY_MAJOR_VERSION < 3 - if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) { - while (*name) { - if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) - && _PyString_Eq(**name, key)) { - values[name-argnames] = value; - break; - } - name++; - } - if (*name) continue; - else { - PyObject*** argname = argnames; - while (argname != first_kw_arg) { - if ((**argname == key) || ( - (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) - && _PyString_Eq(**argname, key))) { - goto arg_passed_twice; - } - argname++; - } - } - } else - #endif - if (likely(PyUnicode_Check(key))) { - while (*name) { - int cmp = (**name == key) ? 0 : - #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 - (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : - #endif - PyUnicode_Compare(**name, key); - if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; - if (cmp == 0) { - values[name-argnames] = value; - break; - } - name++; - } - if (*name) continue; - else { - PyObject*** argname = argnames; - while (argname != first_kw_arg) { - int cmp = (**argname == key) ? 0 : - #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 - (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : - #endif - PyUnicode_Compare(**argname, key); - if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; - if (cmp == 0) goto arg_passed_twice; - argname++; - } - } - } else - goto invalid_keyword_type; - if (kwds2) { - if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; - } else { - goto invalid_keyword; - } - } - return 0; -arg_passed_twice: - __Pyx_RaiseDoubleKeywordsError(function_name, key); - goto bad; -invalid_keyword_type: - PyErr_Format(PyExc_TypeError, - "%.200s() keywords must be strings", function_name); - goto bad; -invalid_keyword: - PyErr_Format(PyExc_TypeError, - #if PY_MAJOR_VERSION < 3 - "%.200s() got an unexpected keyword argument '%.200s'", - function_name, PyString_AsString(key)); - #else - "%s() got an unexpected keyword argument '%U'", - function_name, key); - #endif -bad: - return -1; -} - -/* RaiseArgTupleInvalid */ - static void __Pyx_RaiseArgtupleInvalid( - const char* func_name, - int exact, - Py_ssize_t num_min, - Py_ssize_t num_max, - Py_ssize_t num_found) -{ - Py_ssize_t num_expected; - const char *more_or_less; - if (num_found < num_min) { - num_expected = num_min; - more_or_less = "at least"; - } else { - num_expected = num_max; - more_or_less = "at most"; - } - if (exact) { - more_or_less = "exactly"; - } - PyErr_Format(PyExc_TypeError, - "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", - func_name, more_or_less, num_expected, - (num_expected == 1) ? "" : "s", num_found); -} - /* RaiseTooManyValuesToUnpack */ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, @@ -11822,45 +12623,134 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) { return __Pyx_PyFunction_FastCall(func, NULL, 0); } #endif -#ifdef __Pyx_CyFunction_USED - if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { -#else - if (likely(PyCFunction_Check(func))) { +#ifdef __Pyx_CyFunction_USED + if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { +#else + if (likely(PyCFunction_Check(func))) { +#endif + if (likely(PyCFunction_GET_FLAGS(func) & METH_NOARGS)) { + return __Pyx_PyObject_CallMethO(func, NULL); + } + } + return __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL); +} +#endif + +/* PyIntBinop */ + #if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { + #if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(op1))) { + const long b = intval; + long x; + long a = PyInt_AS_LONG(op1); + x = (long)((unsigned long)a + b); + if (likely((x^a) >= 0 || (x^b) >= 0)) + return PyInt_FromLong(x); + return PyLong_Type.tp_as_number->nb_add(op1, op2); + } + #endif + #if CYTHON_USE_PYLONG_INTERNALS + if (likely(PyLong_CheckExact(op1))) { + const long b = intval; + long a, x; +#ifdef HAVE_LONG_LONG + const PY_LONG_LONG llb = intval; + PY_LONG_LONG lla, llx; +#endif + const digit* digits = ((PyLongObject*)op1)->ob_digit; + const Py_ssize_t size = Py_SIZE(op1); + if (likely(__Pyx_sst_abs(size) <= 1)) { + a = likely(size) ? digits[0] : 0; + if (size == -1) a = -a; + } else { + switch (size) { + case -2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case 2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case -3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case 3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case -4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + case 4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; #endif - if (likely(PyCFunction_GET_FLAGS(func) & METH_NOARGS)) { - return __Pyx_PyObject_CallMethO(func, NULL); + } + default: return PyLong_Type.tp_as_number->nb_add(op1, op2); + } } - } - return __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL); -} + x = a + b; + return PyLong_FromLong(x); +#ifdef HAVE_LONG_LONG + long_long: + llx = lla + llb; + return PyLong_FromLongLong(llx); #endif - -/* ArgTypeTest */ - static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { - PyErr_Format(PyExc_TypeError, - "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", - name, type->tp_name, Py_TYPE(obj)->tp_name); -} -static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, - const char *name, int exact) -{ - if (unlikely(!type)) { - PyErr_SetString(PyExc_SystemError, "Missing type object"); - return 0; - } - if (none_allowed && obj == Py_None) return 1; - else if (exact) { - if (likely(Py_TYPE(obj) == type)) return 1; - #if PY_MAJOR_VERSION == 2 - else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; - #endif + + } - else { - if (likely(PyObject_TypeCheck(obj, type))) return 1; + #endif + if (PyFloat_CheckExact(op1)) { + const long b = intval; + double a = PyFloat_AS_DOUBLE(op1); + double result; + PyFPE_START_PROTECT("add", return NULL) + result = ((double)a) + (double)b; + PyFPE_END_PROTECT(result) + return PyFloat_FromDouble(result); } - __Pyx_RaiseArgumentTypeInvalid(name, obj, type); - return 0; + return (inplace ? PyNumber_InPlaceAdd : PyNumber_Add)(op1, op2); } +#endif /* GetAttr */ static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *o, PyObject *n) { @@ -12342,8 +13232,630 @@ static int __Pyx_setup_reduce(PyObject* type_obj) { return ret; } +/* FetchCommonType */ + static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) { + PyObject* fake_module; + PyTypeObject* cached_type = NULL; + fake_module = PyImport_AddModule((char*) "_cython_" CYTHON_ABI); + if (!fake_module) return NULL; + Py_INCREF(fake_module); + cached_type = (PyTypeObject*) PyObject_GetAttrString(fake_module, type->tp_name); + if (cached_type) { + if (!PyType_Check((PyObject*)cached_type)) { + PyErr_Format(PyExc_TypeError, + "Shared Cython type %.200s is not a type object", + type->tp_name); + goto bad; + } + if (cached_type->tp_basicsize != type->tp_basicsize) { + PyErr_Format(PyExc_TypeError, + "Shared Cython type %.200s has the wrong size, try recompiling", + type->tp_name); + goto bad; + } + } else { + if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad; + PyErr_Clear(); + if (PyType_Ready(type) < 0) goto bad; + if (PyObject_SetAttrString(fake_module, type->tp_name, (PyObject*) type) < 0) + goto bad; + Py_INCREF(type); + cached_type = type; + } +done: + Py_DECREF(fake_module); + return cached_type; +bad: + Py_XDECREF(cached_type); + cached_type = NULL; + goto done; +} + +/* CythonFunction */ + static PyObject * +__Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *closure) +{ + if (unlikely(op->func_doc == NULL)) { + if (op->func.m_ml->ml_doc) { +#if PY_MAJOR_VERSION >= 3 + op->func_doc = PyUnicode_FromString(op->func.m_ml->ml_doc); +#else + op->func_doc = PyString_FromString(op->func.m_ml->ml_doc); +#endif + if (unlikely(op->func_doc == NULL)) + return NULL; + } else { + Py_INCREF(Py_None); + return Py_None; + } + } + Py_INCREF(op->func_doc); + return op->func_doc; +} +static int +__Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp = op->func_doc; + if (value == NULL) { + value = Py_None; + } + Py_INCREF(value); + op->func_doc = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op) +{ + if (unlikely(op->func_name == NULL)) { +#if PY_MAJOR_VERSION >= 3 + op->func_name = PyUnicode_InternFromString(op->func.m_ml->ml_name); +#else + op->func_name = PyString_InternFromString(op->func.m_ml->ml_name); +#endif + if (unlikely(op->func_name == NULL)) + return NULL; + } + Py_INCREF(op->func_name); + return op->func_name; +} +static int +__Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp; +#if PY_MAJOR_VERSION >= 3 + if (unlikely(value == NULL || !PyUnicode_Check(value))) { +#else + if (unlikely(value == NULL || !PyString_Check(value))) { +#endif + PyErr_SetString(PyExc_TypeError, + "__name__ must be set to a string object"); + return -1; + } + tmp = op->func_name; + Py_INCREF(value); + op->func_name = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op) +{ + Py_INCREF(op->func_qualname); + return op->func_qualname; +} +static int +__Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp; +#if PY_MAJOR_VERSION >= 3 + if (unlikely(value == NULL || !PyUnicode_Check(value))) { +#else + if (unlikely(value == NULL || !PyString_Check(value))) { +#endif + PyErr_SetString(PyExc_TypeError, + "__qualname__ must be set to a string object"); + return -1; + } + tmp = op->func_qualname; + Py_INCREF(value); + op->func_qualname = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_self(__pyx_CyFunctionObject *m, CYTHON_UNUSED void *closure) +{ + PyObject *self; + self = m->func_closure; + if (self == NULL) + self = Py_None; + Py_INCREF(self); + return self; +} +static PyObject * +__Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op) +{ + if (unlikely(op->func_dict == NULL)) { + op->func_dict = PyDict_New(); + if (unlikely(op->func_dict == NULL)) + return NULL; + } + Py_INCREF(op->func_dict); + return op->func_dict; +} +static int +__Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp; + if (unlikely(value == NULL)) { + PyErr_SetString(PyExc_TypeError, + "function's dictionary may not be deleted"); + return -1; + } + if (unlikely(!PyDict_Check(value))) { + PyErr_SetString(PyExc_TypeError, + "setting function's dictionary to a non-dict"); + return -1; + } + tmp = op->func_dict; + Py_INCREF(value); + op->func_dict = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op) +{ + Py_INCREF(op->func_globals); + return op->func_globals; +} +static PyObject * +__Pyx_CyFunction_get_closure(CYTHON_UNUSED __pyx_CyFunctionObject *op) +{ + Py_INCREF(Py_None); + return Py_None; +} +static PyObject * +__Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op) +{ + PyObject* result = (op->func_code) ? op->func_code : Py_None; + Py_INCREF(result); + return result; +} +static int +__Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) { + int result = 0; + PyObject *res = op->defaults_getter((PyObject *) op); + if (unlikely(!res)) + return -1; + #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + op->defaults_tuple = PyTuple_GET_ITEM(res, 0); + Py_INCREF(op->defaults_tuple); + op->defaults_kwdict = PyTuple_GET_ITEM(res, 1); + Py_INCREF(op->defaults_kwdict); + #else + op->defaults_tuple = PySequence_ITEM(res, 0); + if (unlikely(!op->defaults_tuple)) result = -1; + else { + op->defaults_kwdict = PySequence_ITEM(res, 1); + if (unlikely(!op->defaults_kwdict)) result = -1; + } + #endif + Py_DECREF(res); + return result; +} +static int +__Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value) { + PyObject* tmp; + if (!value) { + value = Py_None; + } else if (value != Py_None && !PyTuple_Check(value)) { + PyErr_SetString(PyExc_TypeError, + "__defaults__ must be set to a tuple object"); + return -1; + } + Py_INCREF(value); + tmp = op->defaults_tuple; + op->defaults_tuple = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op) { + PyObject* result = op->defaults_tuple; + if (unlikely(!result)) { + if (op->defaults_getter) { + if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL; + result = op->defaults_tuple; + } else { + result = Py_None; + } + } + Py_INCREF(result); + return result; +} +static int +__Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value) { + PyObject* tmp; + if (!value) { + value = Py_None; + } else if (value != Py_None && !PyDict_Check(value)) { + PyErr_SetString(PyExc_TypeError, + "__kwdefaults__ must be set to a dict object"); + return -1; + } + Py_INCREF(value); + tmp = op->defaults_kwdict; + op->defaults_kwdict = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op) { + PyObject* result = op->defaults_kwdict; + if (unlikely(!result)) { + if (op->defaults_getter) { + if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL; + result = op->defaults_kwdict; + } else { + result = Py_None; + } + } + Py_INCREF(result); + return result; +} +static int +__Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value) { + PyObject* tmp; + if (!value || value == Py_None) { + value = NULL; + } else if (!PyDict_Check(value)) { + PyErr_SetString(PyExc_TypeError, + "__annotations__ must be set to a dict object"); + return -1; + } + Py_XINCREF(value); + tmp = op->func_annotations; + op->func_annotations = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op) { + PyObject* result = op->func_annotations; + if (unlikely(!result)) { + result = PyDict_New(); + if (unlikely(!result)) return NULL; + op->func_annotations = result; + } + Py_INCREF(result); + return result; +} +static PyGetSetDef __pyx_CyFunction_getsets[] = { + {(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, + {(char *) "__doc__", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, + {(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, + {(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, + {(char *) "__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0}, + {(char *) "__self__", (getter)__Pyx_CyFunction_get_self, 0, 0, 0}, + {(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, + {(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, + {(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, + {(char *) "__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, + {(char *) "func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, + {(char *) "__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, + {(char *) "func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, + {(char *) "__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, + {(char *) "func_defaults", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, + {(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, + {(char *) "__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0}, + {(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0}, + {0, 0, 0, 0, 0} +}; +static PyMemberDef __pyx_CyFunction_members[] = { + {(char *) "__module__", T_OBJECT, offsetof(__pyx_CyFunctionObject, func.m_module), PY_WRITE_RESTRICTED, 0}, + {0, 0, 0, 0, 0} +}; +static PyObject * +__Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, CYTHON_UNUSED PyObject *args) +{ +#if PY_MAJOR_VERSION >= 3 + return PyUnicode_FromString(m->func.m_ml->ml_name); +#else + return PyString_FromString(m->func.m_ml->ml_name); +#endif +} +static PyMethodDef __pyx_CyFunction_methods[] = { + {"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0}, + {0, 0, 0, 0} +}; +#if PY_VERSION_HEX < 0x030500A0 +#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist) +#else +#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func.m_weakreflist) +#endif +static PyObject *__Pyx_CyFunction_New(PyTypeObject *type, PyMethodDef *ml, int flags, PyObject* qualname, + PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { + __pyx_CyFunctionObject *op = PyObject_GC_New(__pyx_CyFunctionObject, type); + if (op == NULL) + return NULL; + op->flags = flags; + __Pyx_CyFunction_weakreflist(op) = NULL; + op->func.m_ml = ml; + op->func.m_self = (PyObject *) op; + Py_XINCREF(closure); + op->func_closure = closure; + Py_XINCREF(module); + op->func.m_module = module; + op->func_dict = NULL; + op->func_name = NULL; + Py_INCREF(qualname); + op->func_qualname = qualname; + op->func_doc = NULL; + op->func_classobj = NULL; + op->func_globals = globals; + Py_INCREF(op->func_globals); + Py_XINCREF(code); + op->func_code = code; + op->defaults_pyobjects = 0; + op->defaults = NULL; + op->defaults_tuple = NULL; + op->defaults_kwdict = NULL; + op->defaults_getter = NULL; + op->func_annotations = NULL; + PyObject_GC_Track(op); + return (PyObject *) op; +} +static int +__Pyx_CyFunction_clear(__pyx_CyFunctionObject *m) +{ + Py_CLEAR(m->func_closure); + Py_CLEAR(m->func.m_module); + Py_CLEAR(m->func_dict); + Py_CLEAR(m->func_name); + Py_CLEAR(m->func_qualname); + Py_CLEAR(m->func_doc); + Py_CLEAR(m->func_globals); + Py_CLEAR(m->func_code); + Py_CLEAR(m->func_classobj); + Py_CLEAR(m->defaults_tuple); + Py_CLEAR(m->defaults_kwdict); + Py_CLEAR(m->func_annotations); + if (m->defaults) { + PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); + int i; + for (i = 0; i < m->defaults_pyobjects; i++) + Py_XDECREF(pydefaults[i]); + PyObject_Free(m->defaults); + m->defaults = NULL; + } + return 0; +} +static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m) +{ + PyObject_GC_UnTrack(m); + if (__Pyx_CyFunction_weakreflist(m) != NULL) + PyObject_ClearWeakRefs((PyObject *) m); + __Pyx_CyFunction_clear(m); + PyObject_GC_Del(m); +} +static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg) +{ + Py_VISIT(m->func_closure); + Py_VISIT(m->func.m_module); + Py_VISIT(m->func_dict); + Py_VISIT(m->func_name); + Py_VISIT(m->func_qualname); + Py_VISIT(m->func_doc); + Py_VISIT(m->func_globals); + Py_VISIT(m->func_code); + Py_VISIT(m->func_classobj); + Py_VISIT(m->defaults_tuple); + Py_VISIT(m->defaults_kwdict); + if (m->defaults) { + PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); + int i; + for (i = 0; i < m->defaults_pyobjects; i++) + Py_VISIT(pydefaults[i]); + } + return 0; +} +static PyObject *__Pyx_CyFunction_descr_get(PyObject *func, PyObject *obj, PyObject *type) +{ + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + if (m->flags & __Pyx_CYFUNCTION_STATICMETHOD) { + Py_INCREF(func); + return func; + } + if (m->flags & __Pyx_CYFUNCTION_CLASSMETHOD) { + if (type == NULL) + type = (PyObject *)(Py_TYPE(obj)); + return __Pyx_PyMethod_New(func, type, (PyObject *)(Py_TYPE(type))); + } + if (obj == Py_None) + obj = NULL; + return __Pyx_PyMethod_New(func, obj, type); +} +static PyObject* +__Pyx_CyFunction_repr(__pyx_CyFunctionObject *op) +{ +#if PY_MAJOR_VERSION >= 3 + return PyUnicode_FromFormat("", + op->func_qualname, (void *)op); +#else + return PyString_FromFormat("", + PyString_AsString(op->func_qualname), (void *)op); +#endif +} +static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, PyObject *arg, PyObject *kw) { + PyCFunctionObject* f = (PyCFunctionObject*)func; + PyCFunction meth = f->m_ml->ml_meth; + Py_ssize_t size; + switch (f->m_ml->ml_flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) { + case METH_VARARGS: + if (likely(kw == NULL || PyDict_Size(kw) == 0)) + return (*meth)(self, arg); + break; + case METH_VARARGS | METH_KEYWORDS: + return (*(PyCFunctionWithKeywords)meth)(self, arg, kw); + case METH_NOARGS: + if (likely(kw == NULL || PyDict_Size(kw) == 0)) { + size = PyTuple_GET_SIZE(arg); + if (likely(size == 0)) + return (*meth)(self, NULL); + PyErr_Format(PyExc_TypeError, + "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", + f->m_ml->ml_name, size); + return NULL; + } + break; + case METH_O: + if (likely(kw == NULL || PyDict_Size(kw) == 0)) { + size = PyTuple_GET_SIZE(arg); + if (likely(size == 1)) { + PyObject *result, *arg0 = PySequence_ITEM(arg, 0); + if (unlikely(!arg0)) return NULL; + result = (*meth)(self, arg0); + Py_DECREF(arg0); + return result; + } + PyErr_Format(PyExc_TypeError, + "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", + f->m_ml->ml_name, size); + return NULL; + } + break; + default: + PyErr_SetString(PyExc_SystemError, "Bad call flags in " + "__Pyx_CyFunction_Call. METH_OLDARGS is no " + "longer supported!"); + return NULL; + } + PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments", + f->m_ml->ml_name); + return NULL; +} +static CYTHON_INLINE PyObject *__Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) { + return __Pyx_CyFunction_CallMethod(func, ((PyCFunctionObject*)func)->m_self, arg, kw); +} +static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, PyObject *kw) { + PyObject *result; + __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *) func; + if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { + Py_ssize_t argc; + PyObject *new_args; + PyObject *self; + argc = PyTuple_GET_SIZE(args); + new_args = PyTuple_GetSlice(args, 1, argc); + if (unlikely(!new_args)) + return NULL; + self = PyTuple_GetItem(args, 0); + if (unlikely(!self)) { + Py_DECREF(new_args); + return NULL; + } + result = __Pyx_CyFunction_CallMethod(func, self, new_args, kw); + Py_DECREF(new_args); + } else { + result = __Pyx_CyFunction_Call(func, args, kw); + } + return result; +} +static PyTypeObject __pyx_CyFunctionType_type = { + PyVarObject_HEAD_INIT(0, 0) + "cython_function_or_method", + sizeof(__pyx_CyFunctionObject), + 0, + (destructor) __Pyx_CyFunction_dealloc, + 0, + 0, + 0, +#if PY_MAJOR_VERSION < 3 + 0, +#else + 0, +#endif + (reprfunc) __Pyx_CyFunction_repr, + 0, + 0, + 0, + 0, + __Pyx_CyFunction_CallAsMethod, + 0, + 0, + 0, + 0, + Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC, + 0, + (traverseproc) __Pyx_CyFunction_traverse, + (inquiry) __Pyx_CyFunction_clear, + 0, +#if PY_VERSION_HEX < 0x030500A0 + offsetof(__pyx_CyFunctionObject, func_weakreflist), +#else + offsetof(PyCFunctionObject, m_weakreflist), +#endif + 0, + 0, + __pyx_CyFunction_methods, + __pyx_CyFunction_members, + __pyx_CyFunction_getsets, + 0, + 0, + __Pyx_CyFunction_descr_get, + 0, + offsetof(__pyx_CyFunctionObject, func_dict), + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, +#if PY_VERSION_HEX >= 0x030400a1 + 0, +#endif +}; +static int __pyx_CyFunction_init(void) { + __pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type); + if (__pyx_CyFunctionType == NULL) { + return -1; + } + return 0; +} +static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->defaults = PyObject_Malloc(size); + if (!m->defaults) + return PyErr_NoMemory(); + memset(m->defaults, 0, size); + m->defaults_pyobjects = pyobjects; + return m->defaults; +} +static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->defaults_tuple = tuple; + Py_INCREF(tuple); +} +static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->defaults_kwdict = dict; + Py_INCREF(dict); +} +static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->func_annotations = dict; + Py_INCREF(dict); +} + /* CLineInTraceback */ - static int __Pyx_CLineForTraceback(int c_line) { + static int __Pyx_CLineForTraceback(int c_line) { #ifdef CYTHON_CLINE_IN_TRACEBACK return ((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0; #else @@ -12377,7 +13889,7 @@ static int __Pyx_setup_reduce(PyObject* type_obj) { } /* CodeObjectCache */ - static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; @@ -12457,7 +13969,7 @@ static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { } /* AddTraceback */ - #include "compile.h" + #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( @@ -12541,7 +14053,7 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -12572,7 +14084,7 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, } /* CIntFromPyVerify */ - #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) @@ -12614,8 +14126,8 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif - /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + /* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -12646,7 +14158,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -12677,7 +14189,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); @@ -12697,7 +14209,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -12832,7 +14344,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); @@ -12852,7 +14364,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -12987,7 +14499,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -13018,7 +14530,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -13207,7 +14719,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -13396,7 +14908,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CheckBinaryVersion */ - static int __Pyx_check_binary_version(void) { + static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); @@ -13411,8 +14923,45 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { return 0; } +/* FunctionExport */ + static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig) { + PyObject *d = 0; + PyObject *cobj = 0; + union { + void (*fp)(void); + void *p; + } tmp; + d = PyObject_GetAttrString(__pyx_m, (char *)"__pyx_capi__"); + if (!d) { + PyErr_Clear(); + d = PyDict_New(); + if (!d) + goto bad; + Py_INCREF(d); + if (PyModule_AddObject(__pyx_m, (char *)"__pyx_capi__", d) < 0) + goto bad; + } + tmp.fp = f; +#if PY_VERSION_HEX >= 0x02070000 + cobj = PyCapsule_New(tmp.p, sig, 0); +#else + cobj = PyCObject_FromVoidPtrAndDesc(tmp.p, (void *)sig, 0); +#endif + if (!cobj) + goto bad; + if (PyDict_SetItemString(d, name, cobj) < 0) + goto bad; + Py_DECREF(cobj); + Py_DECREF(d); + return 0; +bad: + Py_XDECREF(cobj); + Py_XDECREF(d); + return -1; +} + /* ModuleImport */ - #ifndef __PYX_HAVE_RT_ImportModule + #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; @@ -13430,7 +14979,7 @@ static PyObject *__Pyx_ImportModule(const char *name) { #endif /* TypeImport */ - #ifndef __PYX_HAVE_RT_ImportType + #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) @@ -13495,7 +15044,7 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class #endif /* InitStrings */ - static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { diff --git a/ccd/models/robust_fit.pxd b/ccd/models/robust_fit.pxd new file mode 100644 index 0000000..e20e21d --- /dev/null +++ b/ccd/models/robust_fit.pxd @@ -0,0 +1,47 @@ +import numpy as np +cimport numpy as np + +from cpython cimport bool + +ctypedef np.float64_t STYPE_t +ctypedef float FTYPE_t +ctypedef int ITYPE_t +ctypedef bool BTYPE_t +ctypedef np.long_t LTYPE_t + + +cpdef np.ndarray[STYPE_t, ndim=1] bisquare(np.ndarray[STYPE_t, ndim=1] resid, + FTYPE_t c=*) + +cpdef STYPE_t mad(np.ndarray[STYPE_t, ndim=1] x, + STYPE_t c=*) + +cpdef bool _check_converge(np.ndarray[STYPE_t, ndim=1] x0, + np.ndarray[STYPE_t, ndim=1] x, + STYPE_t tol=*) + +cpdef np.ndarray[STYPE_t, ndim=1] _weight_beta(np.ndarray[STYPE_t, ndim=2] X, + np.ndarray[STYPE_t, ndim=1] y, + np.ndarray[STYPE_t, ndim=1] w) + +cpdef np.ndarray[STYPE_t, ndim=1] _weight_resid(np.ndarray[STYPE_t, ndim=2] X, + np.ndarray[STYPE_t, ndim=1] y, + np.ndarray[STYPE_t, ndim=1] beta) + + + +cdef class RLM: + cdef public FTYPE_t tune + cdef public FTYPE_t scale_constant + cdef public BTYPE_t update_scale + cdef public ITYPE_t maxiter + cdef public STYPE_t tol + cdef public np.ndarray coef_ + cdef public STYPE_t intercept_ + cdef public STYPE_t scale + cdef public np.ndarray weights + + cpdef object fit(self, np.ndarray X, np.ndarray y) + + cpdef np.ndarray predict(self, np.ndarray X) + diff --git a/ccd/models/robust_fit.pyx b/ccd/models/robust_fit.py similarity index 73% rename from ccd/models/robust_fit.pyx rename to ccd/models/robust_fit.py index 04eb7fc..861185b 100644 --- a/ccd/models/robust_fit.pyx +++ b/ccd/models/robust_fit.py @@ -16,14 +16,6 @@ # Don't alias to ``np`` until fix is implemented # https://github.com/numba/numba/issues/1559 import numpy -cimport numpy - -from cpython cimport bool - -ctypedef numpy.float64_t STYPE_t -ctypedef float FTYPE_t -ctypedef int ITYPE_t -ctypedef bool BTYPE_t import sklearn import scipy @@ -31,8 +23,7 @@ EPS = numpy.finfo('float').eps -cdef numpy.ndarray[STYPE_t, ndim=1] bisquare(numpy.ndarray[STYPE_t, ndim=1] resid, - FTYPE_t c=4.685): +def bisquare(resid, c=4.685): """ Returns weighting for each residual using bisquare weight function @@ -47,13 +38,12 @@ http://statsmodels.sourceforge.net/stable/generated/statsmodels.robust.norms.TukeyBiweight.html """ # Weight where abs(resid) < c; otherwise 0 - cdef numpy.ndarray[STYPE_t, ndim=1] abs_resid = numpy.abs(resid) + abs_resid = numpy.abs(resid) return (abs_resid < c) * (1 - (resid / c) ** 2) ** 2 -cdef STYPE_t mad(numpy.ndarray[STYPE_t, ndim=1] x, - STYPE_t c=0.6745): +def mad(x, c=0.6745): """ Returns Median-Absolute-Deviation (MAD) of some data @@ -74,16 +64,11 @@ return numpy.median(rs[4:]) / c -cdef bool _check_converge(numpy.ndarray[STYPE_t, ndim=1] x0, - numpy.ndarray[STYPE_t, ndim=1] x, - STYPE_t tol=1e-8): - +def _check_converge(x0, x, tol=1e-8): return not numpy.any(numpy.fabs(x0 - x > tol)) -cdef numpy.ndarray[STYPE_t, ndim=1] _weight_beta(numpy.ndarray[STYPE_t, ndim=2] X, - numpy.ndarray[STYPE_t, ndim=1] y, - numpy.ndarray[STYPE_t, ndim=1] w): +def _weight_beta(X, y, w): """ Apply a weighted OLS fit to data @@ -97,15 +82,16 @@ """ - cdef numpy.ndarray[STYPE_t, ndim=1] sw = numpy.sqrt(w) - cdef numpy.ndarray[STYPE_t, ndim=2] Xw = X * sw[:, None] - cdef numpy.ndarray[STYPE_t, ndim=1] yw = y * sw + # cdef numpy.ndarray[STYPE_t, ndim=1] sw = numpy.sqrt(w) + # cdef numpy.ndarray[STYPE_t, ndim=2] Xw = X * sw[:, None] + # cdef numpy.ndarray[STYPE_t, ndim=1] yw = y * sw + sw = numpy.sqrt(w) + Xw = X * sw[:, None] + yw = y * sw return numpy.linalg.lstsq(Xw, yw)[0] -cdef numpy.ndarray[STYPE_t, ndim=1] _weight_resid(numpy.ndarray[STYPE_t, ndim=2] X, - numpy.ndarray[STYPE_t, ndim=1] y, - numpy.ndarray[STYPE_t, ndim=1] beta): +def _weight_resid(X, y, beta): """ Apply a weighted OLS fit to data @@ -122,8 +108,8 @@ # Robust regression -#class RLM(object): -cdef class RLM: +class RLM(object): +#cdef class RLM: """ Robust Linear Model using Iterative Reweighted Least Squares (RIRLS) Perform robust fitting regression via iteratively reweighted least squares @@ -153,17 +139,15 @@ robust iteratively reweighted least squares """ - #cdef public: - # tune, scale_constant, update_scale, maxiter, tol, coef_, intercept_, scale, weights - cdef public FTYPE_t tune - cdef public FTYPE_t scale_constant - cdef public BTYPE_t update_scale - cdef public ITYPE_t maxiter - cdef public STYPE_t tol - cdef public numpy.ndarray coef_ - cdef public STYPE_t intercept_ - cdef public STYPE_t scale - cdef public numpy.ndarray weights + # cdef public FTYPE_t tune + # cdef public FTYPE_t scale_constant + # cdef public BTYPE_t update_scale + # cdef public ITYPE_t maxiter + # cdef public STYPE_t tol + # cdef public numpy.ndarray coef_ + # cdef public STYPE_t intercept_ + # cdef public STYPE_t scale + # cdef public numpy.ndarray weights def __init__(self, tune=4.685, scale_constant=0.6745, update_scale=True, maxiter=50, tol=1e-8): @@ -176,9 +160,7 @@ def __init__(self, tune=4.685, scale_constant=0.6745, self.coef_ = None self.intercept_ = 0.0 - cpdef fit(self, - numpy.ndarray[STYPE_t, ndim=2] X, - numpy.ndarray[STYPE_t, ndim=1] y): + def fit(self, X, y): """ Fit a model predicting y from X design matrix Args: @@ -213,8 +195,8 @@ def __init__(self, tune=4.685, scale_constant=0.6745, if self.scale < EPS: return self - cdef ITYPE_t iteration = 1 - cdef ITYPE_t converged = 0 + iteration = 1 + converged = 0 while not converged and iteration < self.maxiter: _coef = self.coef_.copy() resid = y-X.dot(_coef) @@ -241,8 +223,7 @@ def __init__(self, tune=4.685, scale_constant=0.6745, # print resid return self - cpdef numpy.ndarray[STYPE_t, ndim=1] predict(self, - numpy.ndarray[STYPE_t, ndim=2] X): + def predict(self, X): """ Predict yhat using model Args: X (np.ndarray): 2D (n_obs x n_features) design matrix @@ -253,10 +234,10 @@ def __init__(self, tune=4.685, scale_constant=0.6745, return numpy.dot(X[:,1:], self.coef_[1:]) + X[:,0]*self.coef_[0] # return numpy.dot(X, self.coef_) + self.intercept_ - def __str__(self): - return (("%s:\n" - " * Coefficients: %s\n" - " * Intercept = %.5f\n") % - (self.__class__.__name__, - numpy.array_str(self.coef_, precision=4), - self.intercept_)) + #def __str__(self): + # return (("%s:\n" + # " * Coefficients: %s\n" + # " * Intercept = %.5f\n") % + # (self.__class__.__name__, + # numpy.array_str(self.coef_, precision=4), + # self.intercept_)) diff --git a/ccd/models/tmask.c b/ccd/models/tmask.c index 981935c..f659d8f 100644 --- a/ccd/models/tmask.c +++ b/ccd/models/tmask.c @@ -1,14 +1,14 @@ -/* Generated by Cython 0.25.2 */ +/* Generated by Cython 0.26 */ /* BEGIN: Cython Metadata { "distutils": { - "depends": [ - "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h", - "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h" - ], "include_dirs": [ "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include" + ], + "name": "ccd.models.tmask", + "sources": [ + "ccd/models/tmask.py" ] }, "module_name": "ccd.models.tmask" @@ -22,7 +22,7 @@ END: Cython Metadata */ #elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) #error Cython requires Python 2.6+ or Python 3.2+. #else -#define CYTHON_ABI "0_25_2" +#define CYTHON_ABI "0_26" #include #ifndef offsetof #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) @@ -44,6 +44,7 @@ END: Cython Metadata */ #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif +#define __PYX_COMMA , #ifndef HAVE_LONG_LONG #if PY_VERSION_HEX >= 0x03030000 || (PY_MAJOR_VERSION == 2 && PY_VERSION_HEX >= 0x02070000) #define HAVE_LONG_LONG @@ -196,16 +197,20 @@ END: Cython Metadata */ #ifndef Py_TPFLAGS_HAVE_FINALIZE #define Py_TPFLAGS_HAVE_FINALIZE 0 #endif -#ifndef METH_FASTCALL - #define METH_FASTCALL 0x80 - typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, - Py_ssize_t nargs, PyObject *kwnames); +#if PY_VERSION_HEX < 0x030700A0 || !defined(METH_FASTCALL) + #ifndef METH_FASTCALL + #define METH_FASTCALL 0x80 + #endif + typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, Py_ssize_t nargs); + typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject **args, + Py_ssize_t nargs, PyObject *kwnames); #else #define __Pyx_PyCFunctionFast _PyCFunctionFast + #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords #endif #if CYTHON_FAST_PYCCALL #define __Pyx_PyFastCFunction_Check(func)\ - ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST))))) + ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))))) #else #define __Pyx_PyFastCFunction_Check(func) 0 #endif @@ -332,6 +337,12 @@ END: Cython Metadata */ #else #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) #endif +#ifndef __has_attribute + #define __has_attribute(x) 0 +#endif +#ifndef __has_cpp_attribute + #define __has_cpp_attribute(x) 0 +#endif #if CYTHON_USE_ASYNC_SLOTS #if PY_VERSION_HEX >= 0x030500B1 #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods @@ -386,6 +397,35 @@ END: Cython Metadata */ # endif #endif #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) +#ifdef _MSC_VER + #ifndef _MSC_STDINT_H_ + #if _MSC_VER < 1300 + typedef unsigned char uint8_t; + typedef unsigned int uint32_t; + #else + typedef unsigned __int8 uint8_t; + typedef unsigned __int32 uint32_t; + #endif + #endif +#else + #include +#endif +#ifndef CYTHON_FALLTHROUGH + #ifdef __cplusplus + #if __has_cpp_attribute(fallthrough) + #define CYTHON_FALLTHROUGH [[fallthrough]] + #elif __has_cpp_attribute(clang::fallthrough) + #define CYTHON_FALLTHROUGH [[clang::fallthrough]] + #endif + #endif + #ifndef CYTHON_FALLTHROUGH + #if __has_attribute(fallthrough) || (defined(__GNUC__) && defined(__attribute__)) + #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) + #else + #define CYTHON_FALLTHROUGH + #endif + #endif +#endif #ifndef CYTHON_INLINE #if defined(__clang__) @@ -494,8 +534,8 @@ typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* enc #else #define __Pyx_sst_abs(value) ((value<0) ? -value : value) #endif -static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); -static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) #define __Pyx_PyBytes_FromString PyBytes_FromString @@ -508,8 +548,11 @@ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize #endif -#define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) @@ -631,10 +674,12 @@ static int __Pyx_init_sys_getdefaultencoding_params(void) { #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ */ +static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } static PyObject *__pyx_m; static PyObject *__pyx_d; static PyObject *__pyx_b; +static PyObject *__pyx_cython_runtime; static PyObject *__pyx_empty_tuple; static PyObject *__pyx_empty_bytes; static PyObject *__pyx_empty_unicode; @@ -667,7 +712,7 @@ static const char *__pyx_filename; static const char *__pyx_f[] = { - "ccd/models/tmask.pyx", + "ccd/models/tmask.py", "__init__.pxd", "type.pxd", "bool.pxd", @@ -1070,208 +1115,6 @@ typedef PyBoolObject *__pyx_t_3ccd_6models_5tmask_BTYPE_t; #define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0) #define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0) -/* Profile.proto */ -#ifndef CYTHON_PROFILE -#if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_PYSTON - #define CYTHON_PROFILE 0 -#else - #define CYTHON_PROFILE 1 -#endif -#endif -#ifndef CYTHON_TRACE_NOGIL - #define CYTHON_TRACE_NOGIL 0 -#else - #if CYTHON_TRACE_NOGIL && !defined(CYTHON_TRACE) - #define CYTHON_TRACE 1 - #endif -#endif -#ifndef CYTHON_TRACE - #define CYTHON_TRACE 0 -#endif -#if CYTHON_TRACE - #undef CYTHON_PROFILE_REUSE_FRAME -#endif -#ifndef CYTHON_PROFILE_REUSE_FRAME - #define CYTHON_PROFILE_REUSE_FRAME 0 -#endif -#if CYTHON_PROFILE || CYTHON_TRACE - #include "compile.h" - #include "frameobject.h" - 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- int retval; - PyThreadState* tstate = PyThreadState_GET(); - if (*frame == NULL || !CYTHON_PROFILE_REUSE_FRAME) { - if (*code == NULL) { - *code = __Pyx_createFrameCodeObject(funcname, srcfile, firstlineno); - if (*code == NULL) return 0; - } - *frame = PyFrame_New( - tstate, /*PyThreadState *tstate*/ - *code, /*PyCodeObject *code*/ - __pyx_d, /*PyObject *globals*/ - 0 /*PyObject *locals*/ - ); - if (*frame == NULL) return 0; - if (CYTHON_TRACE && (*frame)->f_trace == NULL) { - Py_INCREF(Py_None); - (*frame)->f_trace = Py_None; - } -#if PY_VERSION_HEX < 0x030400B1 - } else { - (*frame)->f_tstate = tstate; -#endif - } - __Pyx_PyFrame_SetLineNumber(*frame, firstlineno); - retval = 1; - tstate->tracing++; - tstate->use_tracing = 0; - PyErr_Fetch(&type, &value, &traceback); - #if CYTHON_TRACE - if (tstate->c_tracefunc) - retval = tstate->c_tracefunc(tstate->c_traceobj, *frame, PyTrace_CALL, NULL) == 0; - if (retval && tstate->c_profilefunc) - #endif - retval = tstate->c_profilefunc(tstate->c_profileobj, *frame, PyTrace_CALL, NULL) == 0; - tstate->use_tracing = (tstate->c_profilefunc || - (CYTHON_TRACE && tstate->c_tracefunc)); - tstate->tracing--; - if (retval) { - PyErr_Restore(type, value, traceback); - return tstate->use_tracing && retval; - } else { - Py_XDECREF(type); - Py_XDECREF(value); - Py_XDECREF(traceback); - return -1; - } -} -static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno) { - PyObject *py_srcfile = 0; - PyObject *py_funcname = 0; - PyCodeObject *py_code = 0; - #if PY_MAJOR_VERSION < 3 - py_funcname = PyString_FromString(funcname); - py_srcfile = PyString_FromString(srcfile); - #else - py_funcname = PyUnicode_FromString(funcname); - py_srcfile = PyUnicode_FromString(srcfile); - #endif - if (!py_funcname | !py_srcfile) goto bad; - py_code = PyCode_New( - 0, - #if PY_MAJOR_VERSION >= 3 - 0, - #endif - 0, - 0, - 0, - __pyx_empty_bytes, /*PyObject *code,*/ - __pyx_empty_tuple, /*PyObject *consts,*/ - __pyx_empty_tuple, /*PyObject *names,*/ - __pyx_empty_tuple, /*PyObject *varnames,*/ - __pyx_empty_tuple, /*PyObject *freevars,*/ - __pyx_empty_tuple, /*PyObject *cellvars,*/ - py_srcfile, /*PyObject *filename,*/ - py_funcname, /*PyObject *name,*/ - firstlineno, - __pyx_empty_bytes /*PyObject *lnotab*/ - ); -bad: - Py_XDECREF(py_srcfile); - Py_XDECREF(py_funcname); - return py_code; -} -#endif - /* BufferFormatCheck */ static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { unsigned int n = 1; @@ -6472,17 +6116,22 @@ static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, P PyCFunctionObject *func = (PyCFunctionObject*)func_obj; PyCFunction meth = PyCFunction_GET_FUNCTION(func); PyObject *self = PyCFunction_GET_SELF(func); + int flags = PyCFunction_GET_FLAGS(func); assert(PyCFunction_Check(func)); - assert(METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST))); + assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))); assert(nargs >= 0); assert(nargs == 0 || args != NULL); /* _PyCFunction_FastCallDict() must not be called with an exception set, because it may clear it (directly or indirectly) and so the caller loses its exception */ assert(!PyErr_Occurred()); - return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL); + if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) { + return (*((__Pyx_PyCFunctionFastWithKeywords)meth)) (self, args, nargs, NULL); + } else { + return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs); + } } -#endif // CYTHON_FAST_PYCCALL +#endif /* PyFunctionFastCall */ #if CYTHON_FAST_PYCALL @@ -6601,8 +6250,8 @@ static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_LeaveRecursiveCall(); return result; } -#endif // CPython < 3.6 -#endif // CYTHON_FAST_PYCALL +#endif +#endif /* PyObjectCall */ #if CYTHON_COMPILING_IN_CPYTHON @@ -6662,11 +6311,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec return __Pyx_PyFunction_FastCall(func, &arg, 1); } #endif -#ifdef __Pyx_CyFunction_USED - if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { -#else if (likely(PyCFunction_Check(func))) { -#endif if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { return __Pyx_PyObject_CallMethO(func, arg); #if CYTHON_FAST_PYCCALL @@ -6689,7 +6334,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec #endif /* ExtTypeTest */ - static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; @@ -6702,7 +6347,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObjec } /* PyErrFetchRestore */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; tmp_type = tstate->curexc_type; @@ -6726,7 +6371,7 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject #endif /* RaiseException */ - #if PY_MAJOR_VERSION < 3 + #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { __Pyx_PyThreadState_declare @@ -6888,68 +6533,26 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject } #endif -/* WriteUnraisableException */ - static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, - CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename, - int full_traceback, CYTHON_UNUSED int nogil) { - PyObject *old_exc, *old_val, *old_tb; - PyObject *ctx; - __Pyx_PyThreadState_declare -#ifdef WITH_THREAD - PyGILState_STATE state; - if (nogil) - state = PyGILState_Ensure(); -#ifdef _MSC_VER - else state = (PyGILState_STATE)-1; -#endif -#endif - __Pyx_PyThreadState_assign - __Pyx_ErrFetch(&old_exc, &old_val, &old_tb); - if (full_traceback) { - Py_XINCREF(old_exc); - Py_XINCREF(old_val); - Py_XINCREF(old_tb); - __Pyx_ErrRestore(old_exc, old_val, old_tb); - PyErr_PrintEx(1); - } - #if PY_MAJOR_VERSION < 3 - ctx = PyString_FromString(name); - #else - ctx = PyUnicode_FromString(name); - #endif - __Pyx_ErrRestore(old_exc, old_val, old_tb); - if (!ctx) { - PyErr_WriteUnraisable(Py_None); - } else { - PyErr_WriteUnraisable(ctx); - Py_DECREF(ctx); - } -#ifdef WITH_THREAD - if (nogil) - PyGILState_Release(state); -#endif -} - /* RaiseTooManyValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { + static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } /* RaiseNeedMoreValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { + static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } /* RaiseNoneIterError */ - static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { + static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } /* SaveResetException */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { *type = tstate->exc_type; *value = tstate->exc_value; @@ -6973,7 +6576,7 @@ static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject #endif /* PyErrExceptionMatches */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) { PyObject *exc_type = tstate->curexc_type; if (exc_type == err) return 1; @@ -6983,7 +6586,7 @@ static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tsta #endif /* GetException */ - #if CYTHON_FAST_THREAD_STATE + #if CYTHON_FAST_THREAD_STATE static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { #else static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { @@ -7044,7 +6647,7 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) } /* Import */ - static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { + static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { PyObject *empty_list = 0; PyObject *module = 0; PyObject *global_dict = 0; @@ -7118,7 +6721,7 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) } /* ImportFrom */ - static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { + static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { PyErr_Format(PyExc_ImportError, @@ -7131,8 +6734,42 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) return value; } +/* CLineInTraceback */ + static int __Pyx_CLineForTraceback(int c_line) { +#ifdef CYTHON_CLINE_IN_TRACEBACK + return ((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0; +#else + PyObject **cython_runtime_dict; + PyObject *use_cline; + cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); + if (unlikely(!cython_runtime_dict)) { + PyObject *ptype, *pvalue, *ptraceback; + PyObject *use_cline_obj; + PyErr_Fetch(&ptype, &pvalue, &ptraceback); + use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); + if (use_cline_obj) { + use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; + Py_DECREF(use_cline_obj); + } else { + use_cline = NULL; + } + PyErr_Restore(ptype, pvalue, ptraceback); + } else { + use_cline = PyDict_GetItem(*_PyObject_GetDictPtr(__pyx_cython_runtime), __pyx_n_s_cline_in_traceback); + } + if (!use_cline) { + c_line = 0; + PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); + } + else if (PyObject_Not(use_cline) != 0) { + c_line = 0; + } + return c_line; +#endif +} + /* CodeObjectCache */ - static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; @@ -7212,7 +6849,7 @@ static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { } /* AddTraceback */ - #include "compile.h" + #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( @@ -7271,12 +6908,15 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyFrameObject *py_frame = 0; - py_code = __pyx_find_code_object(c_line ? c_line : py_line); + if (c_line) { + c_line = __Pyx_CLineForTraceback(c_line); + } + py_code = __pyx_find_code_object(c_line ? -c_line : py_line); if (!py_code) { py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) goto bad; - __pyx_insert_code_object(c_line ? c_line : py_line, py_code); + __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); } py_frame = PyFrame_New( PyThreadState_GET(), /*PyThreadState *tstate,*/ @@ -7313,8 +6953,8 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif - /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { + /* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -7344,39 +6984,8 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } } -/* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { - const int neg_one = (int) -1, const_zero = (int) 0; - const int is_unsigned = neg_one > const_zero; - if (is_unsigned) { - if (sizeof(int) < sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(int) <= sizeof(unsigned long)) { - return PyLong_FromUnsignedLong((unsigned long) value); -#ifdef HAVE_LONG_LONG - } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { - return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); -#endif - } - } else { - if (sizeof(int) <= sizeof(long)) { - return PyInt_FromLong((long) value); -#ifdef HAVE_LONG_LONG - } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { - return PyLong_FromLongLong((PY_LONG_LONG) value); -#endif - } - } - { - int one = 1; int little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(int), - little, !is_unsigned); - } -} - /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); @@ -7396,7 +7005,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -7531,7 +7140,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); @@ -7551,7 +7160,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -7685,8 +7294,39 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif #endif +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + const int neg_one = (int) -1, const_zero = (int) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(int) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(int) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(int) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(int), + little, !is_unsigned); + } +} + /* CIntFromPyVerify */ - #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) @@ -7708,7 +7348,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -7739,7 +7379,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -7928,7 +7568,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -7959,7 +7599,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -8148,7 +7788,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CheckBinaryVersion */ - static int __Pyx_check_binary_version(void) { + static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); @@ -8164,7 +7804,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* FunctionExport */ - static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig) { + static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig) { PyObject *d = 0; PyObject *cobj = 0; union { @@ -8201,7 +7841,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* ModuleImport */ - #ifndef __PYX_HAVE_RT_ImportModule + #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; @@ -8219,7 +7859,7 @@ static PyObject *__Pyx_ImportModule(const char *name) { #endif /* TypeImport */ - #ifndef __PYX_HAVE_RT_ImportType + #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) @@ -8284,7 +7924,7 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class #endif /* InitStrings */ - static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { @@ -8309,6 +7949,8 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class #endif if (!*t->p) return -1; + if (PyObject_Hash(*t->p) == -1) + PyErr_Clear(); ++t; } return 0; @@ -8317,11 +7959,11 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); } -static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } -static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if CYTHON_COMPILING_IN_CPYTHON && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) if ( #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII diff --git a/ccd/models/tmask.pxd b/ccd/models/tmask.pxd index 5ced7de..734c08f 100644 --- a/ccd/models/tmask.pxd +++ b/ccd/models/tmask.pxd @@ -10,9 +10,16 @@ ctypedef bool BTYPE_t ctypedef np.long_t LTYPE_t -cdef np.ndarray tmask(np.ndarray[LTYPE_t, ndim=1], - np.ndarray[STYPE_t, ndim=2], - np.ndarray[STYPE_t, ndim=1], - list, - FTYPE_t, - FTYPE_t) \ No newline at end of file +#cdef np.ndarray[STYPE_t, ndim=2] tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, +# FTYPE_t avg_days_yr) +cdef np.ndarray tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, + FTYPE_t avg_days_yr) + + + +cdef np.ndarray tmask(np.ndarray[LTYPE_t, ndim=1] dates, + np.ndarray[STYPE_t, ndim=2] observations, + np.ndarray[STYPE_t, ndim=1] variogram, + list bands, + FTYPE_t t_const, + FTYPE_t avg_days_yr) \ No newline at end of file diff --git a/ccd/models/tmask.pyx b/ccd/models/tmask.py similarity index 71% rename from ccd/models/tmask.pyx rename to ccd/models/tmask.py index 1e677f9..ae7dc1b 100644 --- a/ccd/models/tmask.pyx +++ b/ccd/models/tmask.py @@ -1,14 +1,11 @@ -# cython: profile=True #import logging import numpy as np -cimport numpy as np from ccd.models.robust_fit import RLM #log = logging.getLogger(__name__) -cdef np.ndarray[STYPE_t, ndim=2] tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, - FTYPE_t avg_days_yr): +def tmask_coefficient_matrix(dates, avg_days_yr): """Coefficient matrix that is used for Tmask modeling Args: @@ -17,13 +14,13 @@ Returns: Populated numpy array with coefficient values """ - cdef FTYPE_t annual_cycle = 2*np.pi/avg_days_yr - cdef STYPE_t observation_cycle = annual_cycle / np.ceil((dates[-1] - dates[0]) / avg_days_yr) + annual_cycle = 2*np.pi/avg_days_yr + observation_cycle = annual_cycle / np.ceil((dates[-1] - dates[0]) / avg_days_yr) ac_dates = annual_cycle * dates oc_dates = observation_cycle * dates - cdef np.ndarray[STYPE_t, ndim=2] matrix = np.ones(shape=(dates.shape[0], 5), order='F') + matrix = np.ones(shape=(dates.shape[0], 5), order='F') matrix[:, 0] = np.cos(ac_dates) matrix[:, 1] = np.sin(ac_dates) matrix[:, 2] = np.cos(oc_dates) @@ -32,12 +29,12 @@ return matrix -cdef np.ndarray tmask(np.ndarray[LTYPE_t, ndim=1] dates, - np.ndarray[STYPE_t, ndim=2] observations, - np.ndarray[STYPE_t, ndim=1] variogram, - list bands, - FTYPE_t t_const, - FTYPE_t avg_days_yr): +def tmask(dates, + observations, + variogram, + bands, + t_const, + avg_days_yr): """Produce an index for filtering outliers. Arguments: @@ -56,15 +53,15 @@ # Time and expected values using a four-part matrix of coefficients. # regression = lm.LinearRegression() #regression = robust_fit.RLM(maxiter=5) - cdef np.ndarray[STYPE_t, ndim=2] tmask_matrix = tmask_coefficient_matrix(dates, avg_days_yr) + tmask_matrix = tmask_coefficient_matrix(dates, avg_days_yr) #print("tmask_matrix {} {} {}".format(type(tmask_matrix), tmask_matrix.ndim, tmask_matrix.dtype)) # Accumulator for outliers. This starts off as a list of False values # because we don't assume anything is an outlier. #_, sample_count = observations.shape[0] - cdef ITYPE_t sample_count = observations.shape[1] + sample_count = observations.shape[1] #print("sample_count {} ".format(type(sample_count))) - cdef np.ndarray outliers = np.zeros(sample_count, dtype=bool) + outliers = np.zeros(sample_count, dtype=bool) #print("outliers {} {} {}".format(type(outliers), outliers.ndim, outliers.dtype)) # For each band, determine if the delta between predicted and actual diff --git a/ccd/procedures.c b/ccd/procedures.c index f797f87..ae2f9fd 100644 --- a/ccd/procedures.c +++ b/ccd/procedures.c @@ -3,16 +3,12 @@ /* BEGIN: Cython Metadata { "distutils": { - "depends": [ - "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h", - "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h" - ], "include_dirs": [ "/home/caustin/miniconda2/envs/ccd35/lib/python3.5/site-packages/numpy/core/include" ], "name": "ccd.procedures", "sources": [ - "ccd/procedures.pyx" + "ccd/procedures.py" ] }, "module_name": "ccd.procedures" @@ -716,7 +712,7 @@ static const char *__pyx_filename; static const char *__pyx_f[] = { - "ccd/procedures.pyx", + "ccd/procedures.py", "__init__.pxd", "type.pxd", "bool.pxd", @@ -948,43 +944,7 @@ typedef npy_double __pyx_t_5numpy_double_t; */ typedef npy_longdouble __pyx_t_5numpy_longdouble_t; -/* "ccd/models/tmask.pxd":6 - * from cpython cimport bool - * - * ctypedef np.float64_t STYPE_t # <<<<<<<<<<<<<< - * ctypedef float FTYPE_t - * ctypedef int ITYPE_t - */ -typedef __pyx_t_5numpy_float64_t __pyx_t_3ccd_6models_5tmask_STYPE_t; - -/* "ccd/models/tmask.pxd":7 - * - * ctypedef np.float64_t STYPE_t - * ctypedef float FTYPE_t # <<<<<<<<<<<<<< - * ctypedef int ITYPE_t - * ctypedef bool BTYPE_t - */ -typedef float __pyx_t_3ccd_6models_5tmask_FTYPE_t; - -/* "ccd/models/tmask.pxd":8 - * ctypedef np.float64_t STYPE_t - * ctypedef float FTYPE_t - * ctypedef int ITYPE_t # <<<<<<<<<<<<<< - * ctypedef bool BTYPE_t - * ctypedef np.long_t LTYPE_t - */ -typedef int __pyx_t_3ccd_6models_5tmask_ITYPE_t; - -/* "ccd/models/tmask.pxd":10 - * ctypedef int ITYPE_t - * ctypedef bool BTYPE_t - * ctypedef np.long_t LTYPE_t # <<<<<<<<<<<<<< - * - * - */ -typedef __pyx_t_5numpy_long_t __pyx_t_3ccd_6models_5tmask_LTYPE_t; - -/* "ccd/procedures.pyx":43 +/* "ccd/procedures.pxd":6 * from cpython cimport bool * * ctypedef np.float64_t STYPE_t # <<<<<<<<<<<<<< @@ -993,7 +953,7 @@ typedef __pyx_t_5numpy_long_t __pyx_t_3ccd_6models_5tmask_LTYPE_t; */ typedef __pyx_t_5numpy_float64_t __pyx_t_3ccd_10procedures_STYPE_t; -/* "ccd/procedures.pyx":44 +/* "ccd/procedures.pxd":7 * * ctypedef np.float64_t STYPE_t * ctypedef float FTYPE_t # <<<<<<<<<<<<<< @@ -1002,7 +962,7 @@ typedef __pyx_t_5numpy_float64_t __pyx_t_3ccd_10procedures_STYPE_t; */ typedef float __pyx_t_3ccd_10procedures_FTYPE_t; -/* "ccd/procedures.pyx":45 +/* "ccd/procedures.pxd":8 * ctypedef np.float64_t STYPE_t * ctypedef float FTYPE_t * ctypedef int ITYPE_t # <<<<<<<<<<<<<< @@ -1011,7 +971,7 @@ typedef float __pyx_t_3ccd_10procedures_FTYPE_t; */ typedef int __pyx_t_3ccd_10procedures_ITYPE_t; -/* "ccd/procedures.pyx":47 +/* "ccd/procedures.pxd":10 * ctypedef int ITYPE_t * ctypedef bool BTYPE_t * ctypedef np.long_t LTYPE_t # <<<<<<<<<<<<<< @@ -1082,16 +1042,7 @@ typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; */ typedef npy_cdouble __pyx_t_5numpy_complex_t; -/* "ccd/models/tmask.pxd":9 - * ctypedef float FTYPE_t - * ctypedef int ITYPE_t - * ctypedef bool BTYPE_t # <<<<<<<<<<<<<< - * ctypedef np.long_t LTYPE_t - * - */ -typedef PyBoolObject *__pyx_t_3ccd_6models_5tmask_BTYPE_t; - -/* "ccd/procedures.pyx":46 +/* "ccd/procedures.pxd":9 * ctypedef float FTYPE_t * ctypedef int ITYPE_t * ctypedef bool BTYPE_t # <<<<<<<<<<<<<< @@ -1195,208 +1146,6 @@ static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\ const char* function_name); -/* Profile.proto */ -#ifndef CYTHON_PROFILE -#if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_PYSTON - #define CYTHON_PROFILE 0 -#else - #define CYTHON_PROFILE 1 -#endif -#endif -#ifndef CYTHON_TRACE_NOGIL - #define CYTHON_TRACE_NOGIL 0 -#else - #if CYTHON_TRACE_NOGIL && !defined(CYTHON_TRACE) - #define CYTHON_TRACE 1 - #endif -#endif -#ifndef CYTHON_TRACE - #define CYTHON_TRACE 0 -#endif -#if CYTHON_TRACE - #undef CYTHON_PROFILE_REUSE_FRAME -#endif -#ifndef CYTHON_PROFILE_REUSE_FRAME - #define CYTHON_PROFILE_REUSE_FRAME 0 -#endif -#if CYTHON_PROFILE || CYTHON_TRACE - #include "compile.h" - #include "frameobject.h" - #include "traceback.h" - #if CYTHON_PROFILE_REUSE_FRAME - #define CYTHON_FRAME_MODIFIER static - #define CYTHON_FRAME_DEL(frame) - #else - #define CYTHON_FRAME_MODIFIER - #define CYTHON_FRAME_DEL(frame) Py_CLEAR(frame) - #endif - #define __Pyx_TraceDeclarations\ - static PyCodeObject *__pyx_frame_code = NULL;\ - CYTHON_FRAME_MODIFIER PyFrameObject *__pyx_frame = NULL;\ - int __Pyx_use_tracing = 0; - #define __Pyx_TraceFrameInit(codeobj)\ - if (codeobj) __pyx_frame_code = (PyCodeObject*) codeobj; - #ifdef WITH_THREAD - #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ - if (nogil) {\ - if (CYTHON_TRACE_NOGIL) {\ - PyThreadState *tstate;\ - PyGILState_STATE state = PyGILState_Ensure();\ - tstate = PyThreadState_GET();\ - if (unlikely(tstate->use_tracing) && !tstate->tracing &&\ - (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ - __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, funcname, srcfile, firstlineno);\ - }\ - PyGILState_Release(state);\ - if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ - }\ - } else {\ - PyThreadState* tstate = PyThreadState_GET();\ - if (unlikely(tstate->use_tracing) && !tstate->tracing &&\ - (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ - __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, funcname, srcfile, firstlineno);\ - if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ - }\ - } - #else - #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ - { PyThreadState* tstate = PyThreadState_GET();\ - if (unlikely(tstate->use_tracing) && !tstate->tracing &&\ - (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ - __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, funcname, srcfile, firstlineno);\ - if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ - }\ - } - #endif - #define __Pyx_TraceException()\ - if (likely(!__Pyx_use_tracing)); else {\ - PyThreadState* tstate = PyThreadState_GET();\ - if (tstate->use_tracing &&\ - (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\ - tstate->tracing++;\ - tstate->use_tracing = 0;\ - PyObject *exc_info = __Pyx_GetExceptionTuple(tstate);\ - if (exc_info) {\ - if (CYTHON_TRACE && tstate->c_tracefunc)\ - tstate->c_tracefunc(\ - tstate->c_traceobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ - tstate->c_profilefunc(\ - tstate->c_profileobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ - Py_DECREF(exc_info);\ - }\ - tstate->use_tracing = 1;\ - tstate->tracing--;\ - }\ - } - static void __Pyx_call_return_trace_func(PyThreadState *tstate, PyFrameObject *frame, PyObject *result) { - PyObject *type, *value, *traceback; - PyErr_Fetch(&type, &value, &traceback); - tstate->tracing++; - tstate->use_tracing = 0; - if (CYTHON_TRACE && tstate->c_tracefunc) - tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_RETURN, result); - if (tstate->c_profilefunc) - tstate->c_profilefunc(tstate->c_profileobj, frame, PyTrace_RETURN, result); - CYTHON_FRAME_DEL(frame); - tstate->use_tracing = 1; - tstate->tracing--; - PyErr_Restore(type, value, traceback); - } - #ifdef WITH_THREAD - #define __Pyx_TraceReturn(result, nogil)\ - if (likely(!__Pyx_use_tracing)); else {\ - if (nogil) {\ - if (CYTHON_TRACE_NOGIL) {\ - PyThreadState *tstate;\ - PyGILState_STATE state = PyGILState_Ensure();\ - tstate = PyThreadState_GET();\ - if (tstate->use_tracing) {\ - __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ - }\ - PyGILState_Release(state);\ - }\ - } else {\ - PyThreadState* tstate = PyThreadState_GET();\ - if (tstate->use_tracing) {\ - __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ - }\ - }\ - } - #else - #define __Pyx_TraceReturn(result, nogil)\ - if (likely(!__Pyx_use_tracing)); else {\ - PyThreadState* tstate = PyThreadState_GET();\ - if (tstate->use_tracing) {\ - __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ - }\ - } - #endif - static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno); - static int __Pyx_TraceSetupAndCall(PyCodeObject** code, PyFrameObject** frame, const char *funcname, const char *srcfile, int firstlineno); -#else - #define __Pyx_TraceDeclarations - #define __Pyx_TraceFrameInit(codeobj) - #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if ((1)); else goto_error; - #define __Pyx_TraceException() - #define __Pyx_TraceReturn(result, nogil) -#endif -#if CYTHON_TRACE - static int __Pyx_call_line_trace_func(PyThreadState *tstate, PyFrameObject *frame, int lineno) { - int ret; - PyObject *type, *value, *traceback; - PyErr_Fetch(&type, &value, &traceback); - __Pyx_PyFrame_SetLineNumber(frame, lineno); - tstate->tracing++; - tstate->use_tracing = 0; - ret = tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_LINE, NULL); - tstate->use_tracing = 1; - tstate->tracing--; - if (likely(!ret)) { - PyErr_Restore(type, value, traceback); - } else { - Py_XDECREF(type); - Py_XDECREF(value); - Py_XDECREF(traceback); - } - return ret; - } - #ifdef WITH_THREAD - #define __Pyx_TraceLine(lineno, nogil, goto_error)\ - if (likely(!__Pyx_use_tracing)); else {\ - if (nogil) {\ - if (CYTHON_TRACE_NOGIL) {\ - int ret = 0;\ - PyThreadState *tstate;\ - PyGILState_STATE state = PyGILState_Ensure();\ - tstate = PyThreadState_GET();\ - if (unlikely(tstate->use_tracing && tstate->c_tracefunc)) {\ - ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ - }\ - PyGILState_Release(state);\ - if (unlikely(ret)) goto_error;\ - }\ - } else {\ - PyThreadState* tstate = PyThreadState_GET();\ - if (unlikely(tstate->use_tracing && tstate->c_tracefunc)) {\ - int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ - if (unlikely(ret)) goto_error;\ - }\ - }\ - } - #else - #define __Pyx_TraceLine(lineno, nogil, goto_error)\ - if (likely(!__Pyx_use_tracing)); else {\ - PyThreadState* tstate = PyThreadState_GET();\ - if (unlikely(tstate->use_tracing && tstate->c_tracefunc)) {\ - int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ - if (unlikely(ret)) goto_error;\ - }\ - } - #endif -#else - #define __Pyx_TraceLine(lineno, nogil, goto_error) if ((1)); else goto_error; -#endif - /* GetModuleGlobalName.proto */ static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name); @@ -1508,6 +1257,9 @@ static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) #endif +/* ExtTypeTest.proto */ +static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); + /* RaiseTooManyValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); @@ -1520,12 +1272,6 @@ static CYTHON_INLINE int __Pyx_IterFinish(void); /* UnpackItemEndCheck.proto */ static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); -/* ExtTypeTest.proto */ -static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); - -/* RaiseNoneIterError.proto */ -static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); - /* ListAppend.proto */ #if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) { @@ -1612,10 +1358,8 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); /* RaiseException.proto */ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); -/* WriteUnraisableException.proto */ -static void __Pyx_WriteUnraisable(const char *name, int clineno, - int lineno, const char *filename, - int full_traceback, int nogil); +/* RaiseNoneIterError.proto */ +static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); /* PyErrExceptionMatches.proto */ #if CYTHON_FAST_THREAD_STATE @@ -1625,6 +1369,63 @@ static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tsta #define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err) #endif +/* FetchCommonType.proto */ +static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type); + +/* CythonFunction.proto */ +#define __Pyx_CyFunction_USED 1 +#include +#define __Pyx_CYFUNCTION_STATICMETHOD 0x01 +#define __Pyx_CYFUNCTION_CLASSMETHOD 0x02 +#define __Pyx_CYFUNCTION_CCLASS 0x04 +#define __Pyx_CyFunction_GetClosure(f)\ + (((__pyx_CyFunctionObject *) (f))->func_closure) +#define __Pyx_CyFunction_GetClassObj(f)\ + (((__pyx_CyFunctionObject *) (f))->func_classobj) +#define __Pyx_CyFunction_Defaults(type, f)\ + ((type *)(((__pyx_CyFunctionObject *) (f))->defaults)) +#define __Pyx_CyFunction_SetDefaultsGetter(f, g)\ + ((__pyx_CyFunctionObject *) (f))->defaults_getter = (g) +typedef struct { + PyCFunctionObject func; +#if PY_VERSION_HEX < 0x030500A0 + PyObject *func_weakreflist; +#endif + PyObject *func_dict; + PyObject *func_name; + PyObject *func_qualname; + PyObject *func_doc; + PyObject *func_globals; + PyObject *func_code; + PyObject *func_closure; + PyObject *func_classobj; + void *defaults; + int defaults_pyobjects; + int flags; + PyObject *defaults_tuple; + PyObject *defaults_kwdict; + PyObject *(*defaults_getter)(PyObject *); + PyObject *func_annotations; +} __pyx_CyFunctionObject; +static PyTypeObject *__pyx_CyFunctionType = 0; +#define __Pyx_CyFunction_NewEx(ml, flags, qualname, self, module, globals, code)\ + __Pyx_CyFunction_New(__pyx_CyFunctionType, ml, flags, qualname, self, module, globals, code) +static PyObject *__Pyx_CyFunction_New(PyTypeObject *, PyMethodDef *ml, + int flags, PyObject* qualname, + PyObject *self, + PyObject *module, PyObject *globals, + PyObject* code); +static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *m, + size_t size, + int pyobjects); +static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *m, + PyObject *tuple); +static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m, + PyObject *dict); +static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m, + PyObject *dict); +static int __pyx_CyFunction_init(void); + /* CLineInTraceback.proto */ static int __Pyx_CLineForTraceback(int c_line); @@ -1793,6 +1594,9 @@ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); /* CheckBinaryVersion.proto */ static int __Pyx_check_binary_version(void); +/* FunctionExport.proto */ +static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig); + /* PyIdentifierFromString.proto */ #if !defined(__Pyx_PyIdentifier_FromString) #if PY_MAJOR_VERSION < 3 @@ -1808,9 +1612,6 @@ static PyObject *__Pyx_ImportModule(const char *name); /* TypeImport.proto */ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict); -/* FunctionImport.proto */ -static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (**f)(void), const char *sig); - /* InitStrings.proto */ static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); @@ -1910,11 +1711,9 @@ static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0; static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0; static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/ -/* Module declarations from 'ccd.models.tmask' */ -static PyArrayObject *(*__pyx_f_3ccd_6models_5tmask_tmask)(PyArrayObject *, PyArrayObject *, PyArrayObject *, PyObject *, __pyx_t_3ccd_6models_5tmask_FTYPE_t, __pyx_t_3ccd_6models_5tmask_FTYPE_t); /*proto*/ - /* Module declarations from 'ccd.procedures' */ static PyObject *__pyx_f_3ccd_10procedures_standard_procedure(PyArrayObject *, PyArrayObject *, PyObject *, PyArrayObject *, PyObject *, int __pyx_skip_dispatch); /*proto*/ +static PyObject *__pyx_f_3ccd_10procedures_initialize(PyArrayObject *, PyArrayObject *, PyObject *, PyObject *, PyArrayObject *, PyArrayObject *, PyObject *, PyObject *); /*proto*/ static PyObject *__pyx_f_3ccd_10procedures_lookforward(PyArrayObject *, PyArrayObject *, PyObject *, PyObject *, PyArrayObject *, PyArrayObject *, PyObject *, PyObject *); /*proto*/ static PyObject *__pyx_f_3ccd_10procedures_lookback(PyArrayObject *, PyArrayObject *, PyObject *, PyObject *, __pyx_t_3ccd_10procedures_ITYPE_t, PyArrayObject *, PyArrayObject *, PyObject *); /*proto*/ static PyObject *__pyx_f_3ccd_10procedures_catch(PyArrayObject *, PyArrayObject *, PyObject *, PyArrayObject *, PyObject *, __pyx_t_3ccd_10procedures_ITYPE_t, PyObject *, PyObject *); /*proto*/ @@ -1956,6 +1755,7 @@ static const char __pyx_k_numpy[] = "numpy"; static const char __pyx_k_range[] = "range"; static const char __pyx_k_shape[] = "shape"; static const char __pyx_k_start[] = "start"; +static const char __pyx_k_tmask[] = "tmask"; static const char __pyx_k_water[] = "water"; static const char __pyx_k_zeros[] = "zeros"; static const char __pyx_k_format[] = "format"; @@ -1988,16 +1788,13 @@ static const char __pyx_k_Initial_s[] = "Initial %s"; static const char __pyx_k_MEOW_SIZE[] = "MEOW_SIZE"; static const char __pyx_k_PEEK_SIZE[] = "PEEK_SIZE"; static const char __pyx_k_break_day[] = "break_day"; -static const char __pyx_k_day_delta[] = "day_delta"; static const char __pyx_k_fitter_fn[] = "fitter_fn"; static const char __pyx_k_getLogger[] = "getLogger"; static const char __pyx_k_meow_size[] = "meow_size"; static const char __pyx_k_start_day[] = "start_day"; -static const char __pyx_k_variogram[] = "variogram"; static const char __pyx_k_ValueError[] = "ValueError"; static const char __pyx_k_ccd_change[] = "ccd.change"; static const char __pyx_k_ccd_models[] = "ccd.models"; -static const char __pyx_k_initialize[] = "initialize"; static const char __pyx_k_magnitudes[] = "magnitudes"; static const char __pyx_k_AVG_DAYS_YR[] = "AVG_DAYS_YR"; static const char __pyx_k_INSUF_CLEAR[] = "INSUF_CLEAR"; @@ -2009,19 +1806,13 @@ static const char __pyx_k_enough_snow[] = "enough_snow"; static const char __pyx_k_enough_time[] = "enough_time"; static const char __pyx_k_proc_params[] = "proc_params"; static const char __pyx_k_snow_thresh[] = "snow_thresh"; -static const char __pyx_k_tmask_bands[] = "tmask_bands"; -static const char __pyx_k_tmask_count[] = "tmask_count"; -static const char __pyx_k_tmask_scale[] = "tmask_scale"; static const char __pyx_k_PERSIST_SNOW[] = "PERSIST_SNOW"; static const char __pyx_k_RuntimeError[] = "RuntimeError"; static const char __pyx_k_clear_thresh[] = "clear_thresh"; static const char __pyx_k_enough_clear[] = "enough_clear"; static const char __pyx_k_fit_max_iter[] = "fit_max_iter"; -static const char __pyx_k_model_window[] = "model_window"; static const char __pyx_k_observations[] = "observations"; static const char __pyx_k_spectral_obs[] = "spectral_obs"; -static const char __pyx_k_tmask_period[] = "tmask_period"; -static const char __pyx_k_change_thresh[] = "change_thresh"; static const char __pyx_k_detect_change[] = "detect_change"; static const char __pyx_k_fit_procedure[] = "fit_procedure"; static const char __pyx_k_fitted_models[] = "fitted_models"; @@ -2034,26 +1825,25 @@ static const char __pyx_k_detect_outlier[] = "detect_outlier"; static const char __pyx_k_enough_samples[] = "enough_samples"; static const char __pyx_k_euclidean_norm[] = "euclidean_norm"; static const char __pyx_k_qa_enough_snow[] = "qa_enough_snow"; -static const char __pyx_k_tmask_outliers[] = "tmask_outliers"; static const char __pyx_k_COEFFICIENT_MAX[] = "COEFFICIENT_MAX"; static const char __pyx_k_COEFFICIENT_MID[] = "COEFFICIENT_MID"; static const char __pyx_k_COEFFICIENT_MIN[] = "COEFFICIENT_MIN"; static const char __pyx_k_DETECTION_BANDS[] = "DETECTION_BANDS"; -static const char __pyx_k_detection_bands[] = "detection_bands"; static const char __pyx_k_processing_mask[] = "processing_mask"; static const char __pyx_k_qa_enough_clear[] = "qa_enough_clear"; static const char __pyx_k_CHANGE_THRESHOLD[] = "CHANGE_THRESHOLD"; +static const char __pyx_k_ccd_models_tmask[] = "ccd.models.tmask"; static const char __pyx_k_change_magnitude[] = "change_magnitude"; static const char __pyx_k_find_closest_doy[] = "find_closest_doy"; static const char __pyx_k_Checking_window_s[] = "Checking window: %s"; static const char __pyx_k_Including_index_s[] = "Including index: %s"; static const char __pyx_k_OUTLIER_THRESHOLD[] = "OUTLIER_THRESHOLD"; +static const char __pyx_k_ccd_procedures_py[] = "ccd/procedures.py"; static const char __pyx_k_kelvin_to_celsius[] = "kelvin_to_celsius"; static const char __pyx_k_observation_count[] = "observation_count"; static const char __pyx_k_SNOW_PCT_THRESHOLD[] = "SNOW_PCT_THRESHOLD"; static const char __pyx_k_Variogram_values_s[] = "Variogram values: %s"; static const char __pyx_k_adjusted_variogram[] = "adjusted_variogram"; -static const char __pyx_k_ccd_procedures_pyx[] = "ccd/procedures.pyx"; static const char __pyx_k_change_probability[] = "change_probability"; static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; static const char __pyx_k_standard_procedure[] = "standard_procedure"; @@ -2175,22 +1965,20 @@ static PyObject *__pyx_n_s_ccd; static PyObject *__pyx_n_s_ccd_change; static PyObject *__pyx_n_s_ccd_math_utils; static PyObject *__pyx_n_s_ccd_models; +static PyObject *__pyx_n_s_ccd_models_tmask; static PyObject *__pyx_n_s_ccd_procedures; -static PyObject *__pyx_kp_s_ccd_procedures_pyx; +static PyObject *__pyx_kp_s_ccd_procedures_py; static PyObject *__pyx_kp_s_change_detection_complete; static PyObject *__pyx_n_s_change_magnitude; static PyObject *__pyx_n_s_change_probability; -static PyObject *__pyx_n_s_change_thresh; static PyObject *__pyx_n_s_clear; static PyObject *__pyx_n_s_clear_thresh; static PyObject *__pyx_n_s_cline_in_traceback; static PyObject *__pyx_n_s_curve_qa; static PyObject *__pyx_n_s_dates; -static PyObject *__pyx_n_s_day_delta; static PyObject *__pyx_n_s_debug; static PyObject *__pyx_n_s_detect_change; static PyObject *__pyx_n_s_detect_outlier; -static PyObject *__pyx_n_s_detection_bands; static PyObject *__pyx_n_s_determine_num_coefs; static PyObject *__pyx_n_s_end_day; static PyObject *__pyx_n_s_enough_clear; @@ -2208,7 +1996,6 @@ static PyObject *__pyx_n_s_format; static PyObject *__pyx_n_s_func; static PyObject *__pyx_n_s_getLogger; static PyObject *__pyx_n_s_import; -static PyObject *__pyx_n_s_initialize; static PyObject *__pyx_n_s_insufficient_clear_filter; static PyObject *__pyx_n_s_insufficient_clear_procedure; static PyObject *__pyx_n_s_kelvin_to_celsius; @@ -2222,7 +2009,6 @@ static PyObject *__pyx_n_s_main; static PyObject *__pyx_n_s_max_iter; static PyObject *__pyx_n_s_median; static PyObject *__pyx_n_s_meow_size; -static PyObject *__pyx_n_s_model_window; static PyObject *__pyx_n_s_models; static PyObject *__pyx_n_s_name; static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; @@ -2268,21 +2054,15 @@ static PyObject *__pyx_n_s_start_day; static PyObject *__pyx_n_s_stop; static PyObject *__pyx_n_s_sum; static PyObject *__pyx_n_s_test; -static PyObject *__pyx_n_s_tmask_bands; -static PyObject *__pyx_n_s_tmask_count; -static PyObject *__pyx_n_s_tmask_outliers; -static PyObject *__pyx_n_s_tmask_period; -static PyObject *__pyx_n_s_tmask_scale; +static PyObject *__pyx_n_s_tmask; static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd; static PyObject *__pyx_n_s_update_processing_mask; -static PyObject *__pyx_n_s_variogram; static PyObject *__pyx_n_s_water; static PyObject *__pyx_n_s_zeros; static PyObject *__pyx_pf_3ccd_10procedures_fit_procedure(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_quality, PyObject *__pyx_v_proc_params); /* proto */ static PyObject *__pyx_pf_3ccd_10procedures_2permanent_snow_procedure(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_dates, PyObject *__pyx_v_observations, PyObject *__pyx_v_fitter_fn, PyObject *__pyx_v_quality, PyObject *__pyx_v_proc_params); /* proto */ static PyObject *__pyx_pf_3ccd_10procedures_4insufficient_clear_procedure(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_dates, PyObject *__pyx_v_observations, PyObject *__pyx_v_fitter_fn, PyObject *__pyx_v_quality, PyObject *__pyx_v_proc_params); /* proto */ static PyObject *__pyx_pf_3ccd_10procedures_6standard_procedure(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_dates, PyArrayObject *__pyx_v_observations, PyObject *__pyx_v_fitter_fn, PyArrayObject *__pyx_v_quality, PyObject *__pyx_v_proc_params); /* proto */ -static PyObject *__pyx_pf_3ccd_10procedures_8initialize(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_dates, PyObject *__pyx_v_observations, PyObject *__pyx_v_fitter_fn, PyObject *__pyx_v_model_window, PyObject *__pyx_v_processing_mask, PyObject *__pyx_v_variogram, PyObject *__pyx_v_proc_params, PyObject *__pyx_v_lasso); /* proto */ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ static PyObject *__pyx_float_1_33; @@ -2292,27 +2072,30 @@ static PyObject *__pyx_int_4; static PyObject *__pyx_int_7; static PyObject *__pyx_int_24; static PyObject *__pyx_int_neg_1; -static PyObject *__pyx_codeobj_; +static PyObject *__pyx_slice_; +static PyObject *__pyx_slice__2; static PyObject *__pyx_slice__3; -static PyObject *__pyx_slice__5; -static PyObject *__pyx_slice__6; -static PyObject *__pyx_tuple__7; -static PyObject *__pyx_tuple__8; +static PyObject *__pyx_slice__7; +static PyObject *__pyx_slice__8; +static PyObject *__pyx_tuple__4; +static PyObject *__pyx_tuple__5; +static PyObject *__pyx_tuple__6; static PyObject *__pyx_tuple__9; static PyObject *__pyx_slice__11; -static PyObject *__pyx_slice__12; +static PyObject *__pyx_slice__13; static PyObject *__pyx_slice__15; +static PyObject *__pyx_slice__16; static PyObject *__pyx_slice__17; +static PyObject *__pyx_slice__18; static PyObject *__pyx_slice__19; static PyObject *__pyx_slice__20; -static PyObject *__pyx_slice__21; -static PyObject *__pyx_slice__22; -static PyObject *__pyx_slice__23; -static PyObject *__pyx_slice__24; -static PyObject *__pyx_tuple__13; +static PyObject *__pyx_tuple__10; +static PyObject *__pyx_tuple__12; static PyObject *__pyx_tuple__14; -static PyObject *__pyx_tuple__16; -static PyObject *__pyx_tuple__18; +static PyObject *__pyx_tuple__21; +static PyObject *__pyx_tuple__22; +static PyObject *__pyx_tuple__23; +static PyObject *__pyx_tuple__24; static PyObject *__pyx_tuple__25; static PyObject *__pyx_tuple__26; static PyObject *__pyx_tuple__27; @@ -2320,18 +2103,15 @@ static PyObject *__pyx_tuple__28; static PyObject *__pyx_tuple__29; static PyObject *__pyx_tuple__30; static PyObject *__pyx_tuple__31; -static PyObject *__pyx_tuple__32; static PyObject *__pyx_tuple__33; -static PyObject *__pyx_tuple__34; static PyObject *__pyx_tuple__35; -static PyObject *__pyx_tuple__36; static PyObject *__pyx_tuple__37; -static PyObject *__pyx_tuple__38; -static PyObject *__pyx_codeobj__2; -static PyObject *__pyx_codeobj__4; -static PyObject *__pyx_codeobj__10; +static PyObject *__pyx_codeobj__32; +static PyObject *__pyx_codeobj__34; +static PyObject *__pyx_codeobj__36; +static PyObject *__pyx_codeobj__38; -/* "ccd/procedures.pyx":61 +/* "ccd/procedures.py":52 * * * def fit_procedure(quality, proc_params): # <<<<<<<<<<<<<< @@ -2372,11 +2152,11 @@ static PyObject *__pyx_pw_3ccd_10procedures_1fit_procedure(PyObject *__pyx_self, case 1: if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_proc_params)) != 0)) kw_args--; else { - __Pyx_RaiseArgtupleInvalid("fit_procedure", 1, 2, 2, 1); __PYX_ERR(0, 61, __pyx_L3_error) + __Pyx_RaiseArgtupleInvalid("fit_procedure", 1, 2, 2, 1); __PYX_ERR(0, 52, __pyx_L3_error) } } if (unlikely(kw_args > 0)) { - if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "fit_procedure") < 0)) __PYX_ERR(0, 61, __pyx_L3_error) + if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "fit_procedure") < 0)) __PYX_ERR(0, 52, __pyx_L3_error) } } else if (PyTuple_GET_SIZE(__pyx_args) != 2) { goto __pyx_L5_argtuple_error; @@ -2389,7 +2169,7 @@ static PyObject *__pyx_pw_3ccd_10procedures_1fit_procedure(PyObject *__pyx_self, } goto __pyx_L4_argument_unpacking_done; __pyx_L5_argtuple_error:; - __Pyx_RaiseArgtupleInvalid("fit_procedure", 1, 2, 2, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 61, __pyx_L3_error) + __Pyx_RaiseArgtupleInvalid("fit_procedure", 1, 2, 2, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 52, __pyx_L3_error) __pyx_L3_error:; __Pyx_AddTraceback("ccd.procedures.fit_procedure", __pyx_clineno, __pyx_lineno, __pyx_filename); __Pyx_RefNannyFinishContext(); @@ -2411,7 +2191,6 @@ static PyObject *__pyx_pf_3ccd_10procedures_fit_procedure(CYTHON_UNUSED PyObject PyObject *__pyx_v_snow_thresh = NULL; PyObject *__pyx_v_func = NULL; PyObject *__pyx_r = NULL; - __Pyx_TraceDeclarations __Pyx_RefNannyDeclarations PyObject *__pyx_t_1 = NULL; PyObject *__pyx_t_2 = NULL; @@ -2421,90 +2200,88 @@ static PyObject *__pyx_pf_3ccd_10procedures_fit_procedure(CYTHON_UNUSED PyObject int __pyx_t_6; int __pyx_t_7; PyObject *__pyx_t_8 = NULL; - __Pyx_TraceFrameInit(__pyx_codeobj_) __Pyx_RefNannySetupContext("fit_procedure", 0); - __Pyx_TraceCall("fit_procedure", __pyx_f[0], 61, 0, __PYX_ERR(0, 61, __pyx_L1_error)); - /* "ccd/procedures.pyx":75 + /* "ccd/procedures.py":66 * """ * # TODO do this better * clear = proc_params['QA_CLEAR'] # <<<<<<<<<<<<<< * water = proc_params['QA_WATER'] * fill = proc_params['QA_FILL'] */ - __pyx_t_1 = PyObject_GetItem(__pyx_v_proc_params, __pyx_n_s_QA_CLEAR); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 75, __pyx_L1_error) + __pyx_t_1 = PyObject_GetItem(__pyx_v_proc_params, __pyx_n_s_QA_CLEAR); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 66, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); __pyx_v_clear = __pyx_t_1; __pyx_t_1 = 0; - /* "ccd/procedures.pyx":76 + /* "ccd/procedures.py":67 * # TODO do this better * clear = proc_params['QA_CLEAR'] * water = proc_params['QA_WATER'] # <<<<<<<<<<<<<< * fill = proc_params['QA_FILL'] * snow = proc_params['QA_SNOW'] */ - __pyx_t_1 = PyObject_GetItem(__pyx_v_proc_params, __pyx_n_s_QA_WATER); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 76, __pyx_L1_error) + __pyx_t_1 = PyObject_GetItem(__pyx_v_proc_params, __pyx_n_s_QA_WATER); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 67, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); __pyx_v_water = __pyx_t_1; __pyx_t_1 = 0; - /* "ccd/procedures.pyx":77 + /* "ccd/procedures.py":68 * clear = proc_params['QA_CLEAR'] * water = proc_params['QA_WATER'] * fill = proc_params['QA_FILL'] # <<<<<<<<<<<<<< * snow = proc_params['QA_SNOW'] * clear_thresh = proc_params['CLEAR_PCT_THRESHOLD'] */ - __pyx_t_1 = PyObject_GetItem(__pyx_v_proc_params, __pyx_n_s_QA_FILL); 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if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 79, __pyx_L1_error) + __pyx_t_1 = PyObject_GetItem(__pyx_v_proc_params, __pyx_n_s_CLEAR_PCT_THRESHOLD); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 70, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); __pyx_v_clear_thresh = __pyx_t_1; __pyx_t_1 = 0; - /* "ccd/procedures.pyx":80 + /* "ccd/procedures.py":71 * snow = proc_params['QA_SNOW'] * clear_thresh = proc_params['CLEAR_PCT_THRESHOLD'] * snow_thresh = proc_params['SNOW_PCT_THRESHOLD'] # <<<<<<<<<<<<<< * * if not qa_enough_clear(quality, clear, water, fill, clear_thresh): */ - __pyx_t_1 = PyObject_GetItem(__pyx_v_proc_params, __pyx_n_s_SNOW_PCT_THRESHOLD); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 80, __pyx_L1_error) + __pyx_t_1 = PyObject_GetItem(__pyx_v_proc_params, __pyx_n_s_SNOW_PCT_THRESHOLD); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 71, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); __pyx_v_snow_thresh = __pyx_t_1; __pyx_t_1 = 0; - /* "ccd/procedures.pyx":82 + /* "ccd/procedures.py":73 * snow_thresh = proc_params['SNOW_PCT_THRESHOLD'] * * if not qa_enough_clear(quality, clear, water, fill, clear_thresh): # <<<<<<<<<<<<<< * if qa_enough_snow(quality, clear, water, snow, snow_thresh): * func = permanent_snow_procedure */ - __pyx_t_2 = __Pyx_GetModuleGlobalName(__pyx_n_s_qa_enough_clear); 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If so then we need too look back at\n previous values to see if they can be included within the new\n initialized model.\n\n Step 3: catch -- Fit a general model to values that may have been skipped\n over by the previous steps.\n\n Step 4: lookforward -- Expand the time-frame until a change is detected.\n\n Step 5: Iterate.\n\n Step 6: catch -- End of time series considerations.\n\n Args:\n dates: list of ordinal day numbers relative to some epoch,\n the particular epoch does not matter.\n observations: 2-d array of observed spectral values corresponding\n to each time.\n fitter_fn: a function used to fit observation values and\n acquisition dates for each spectra.\n quality: QA information for each observation\n proc_params: dictionary of processing parameters\n\n Returns:\n list: Change models for each observation of each spectra.\n 1-d ndarray: processing mask indicating which values were used\n for model fitting\n "; +static PyMethodDef __pyx_mdef_3ccd_10procedures_7standard_procedure = {"standard_procedure", (PyCFunction)__pyx_pw_3ccd_10procedures_7standard_procedure, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3ccd_10procedures_6standard_procedure}; 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if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 218, __pyx_L1_error) + __pyx_t_1 = __pyx_f_3ccd_10procedures_standard_procedure(__pyx_v_dates, __pyx_v_observations, __pyx_v_fitter_fn, __pyx_v_quality, __pyx_v_proc_params, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 209, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); __pyx_r = __pyx_t_1; __pyx_t_1 = 0; @@ -6152,149 +5911,19 @@ static PyObject *__pyx_pf_3ccd_10procedures_6standard_procedure(CYTHON_UNUSED Py __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_quality.rcbuffer->pybuffer); __pyx_L2:; __Pyx_XGIVEREF(__pyx_r); - __Pyx_TraceReturn(__pyx_r, 0); __Pyx_RefNannyFinishContext(); return __pyx_r; } -/* "ccd/procedures.pyx":399 - * # dict proc_params, - * # object lasso): +/* "ccd/procedures.py":374 + * + * * def initialize(dates, # <<<<<<<<<<<<<< * observations, * fitter_fn, */ -/* Python wrapper */ -static PyObject *__pyx_pw_3ccd_10procedures_9initialize(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ -static char __pyx_doc_3ccd_10procedures_8initialize[] = "\n Determine a good starting point at which to build off of for the\n subsequent process of change detection, both forward and backward.\n\n Args:\n dates: 1-d ndarray of ordinal day values\n observations: 2-d ndarray representing the spectral values\n fitter_fn: function used for the regression portion of the algorithm\n model_window: start index of time/observation window\n processing_mask: 1-d boolean array identifying which values to\n consider for processing\n variogram: 1-d array of variogram values to compare against for the\n normalization factor\n proc_params: dictionary of processing parameters\n\n Returns:\n slice: model window that was deemed to be a stable start\n namedtuple: fitted regression models\n "; 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- tstate->use_tracing = 0; - PyErr_Fetch(&type, &value, &traceback); - #if CYTHON_TRACE - if (tstate->c_tracefunc) - retval = tstate->c_tracefunc(tstate->c_traceobj, *frame, PyTrace_CALL, NULL) == 0; - if (retval && tstate->c_profilefunc) - #endif - retval = tstate->c_profilefunc(tstate->c_profileobj, *frame, PyTrace_CALL, NULL) == 0; - tstate->use_tracing = (tstate->c_profilefunc || - (CYTHON_TRACE && tstate->c_tracefunc)); - tstate->tracing--; - if (retval) { - PyErr_Restore(type, value, traceback); - return tstate->use_tracing && retval; - } else { - Py_XDECREF(type); - Py_XDECREF(value); - Py_XDECREF(traceback); - return -1; - } -} -static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno) { - PyObject *py_srcfile = 0; - PyObject *py_funcname = 0; - PyCodeObject *py_code = 0; - #if PY_MAJOR_VERSION < 3 - py_funcname = PyString_FromString(funcname); - py_srcfile = PyString_FromString(srcfile); - #else - py_funcname = PyUnicode_FromString(funcname); - py_srcfile = PyUnicode_FromString(srcfile); - #endif - if (!py_funcname | !py_srcfile) goto bad; - py_code = PyCode_New( - 0, - #if PY_MAJOR_VERSION >= 3 - 0, - #endif - 0, - 0, - 0, - __pyx_empty_bytes, /*PyObject *code,*/ - __pyx_empty_tuple, /*PyObject *consts,*/ - __pyx_empty_tuple, /*PyObject *names,*/ - __pyx_empty_tuple, /*PyObject *varnames,*/ - __pyx_empty_tuple, /*PyObject *freevars,*/ - __pyx_empty_tuple, /*PyObject *cellvars,*/ - py_srcfile, /*PyObject *filename,*/ - py_funcname, /*PyObject *name,*/ - firstlineno, - __pyx_empty_bytes /*PyObject *lnotab*/ - ); -bad: - Py_XDECREF(py_srcfile); - Py_XDECREF(py_funcname); - return py_code; -} -#endif - /* GetModuleGlobalName */ static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { PyObject *result; @@ -17599,6 +17163,19 @@ static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { __Pyx_ReleaseBuffer(info); } +/* ExtTypeTest */ + static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + if (likely(PyObject_TypeCheck(obj, type))) + return 1; + PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", + Py_TYPE(obj)->tp_name, type->tp_name); + return 0; +} + /* RaiseTooManyValuesToUnpack */ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, @@ -17659,24 +17236,6 @@ static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { return 0; } -/* ExtTypeTest */ - static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { - if (unlikely(!type)) { - PyErr_SetString(PyExc_SystemError, "Missing type object"); - return 0; - } - if (likely(PyObject_TypeCheck(obj, type))) - return 1; - PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", - Py_TYPE(obj)->tp_name, type->tp_name); - return 0; -} - -/* RaiseNoneIterError */ - static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { - PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); -} - /* PyErrFetchRestore */ #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { @@ -18213,46 +17772,9 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject } #endif -/* WriteUnraisableException */ - static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, - CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename, - int full_traceback, CYTHON_UNUSED int nogil) { - PyObject *old_exc, *old_val, *old_tb; - PyObject *ctx; - __Pyx_PyThreadState_declare -#ifdef WITH_THREAD - PyGILState_STATE state; - if (nogil) - state = PyGILState_Ensure(); -#ifdef _MSC_VER - else state = (PyGILState_STATE)-1; -#endif -#endif - __Pyx_PyThreadState_assign - __Pyx_ErrFetch(&old_exc, &old_val, &old_tb); - if (full_traceback) { - Py_XINCREF(old_exc); - Py_XINCREF(old_val); - Py_XINCREF(old_tb); - __Pyx_ErrRestore(old_exc, old_val, old_tb); - PyErr_PrintEx(1); - } - #if PY_MAJOR_VERSION < 3 - ctx = PyString_FromString(name); - #else - ctx = PyUnicode_FromString(name); - #endif - __Pyx_ErrRestore(old_exc, old_val, old_tb); - if (!ctx) { - PyErr_WriteUnraisable(Py_None); - } else { - PyErr_WriteUnraisable(ctx); - Py_DECREF(ctx); - } -#ifdef WITH_THREAD - if (nogil) - PyGILState_Release(state); -#endif +/* RaiseNoneIterError */ + static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { + PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } /* PyErrExceptionMatches */ @@ -18265,8 +17787,630 @@ static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tsta } #endif +/* FetchCommonType */ + static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) { + PyObject* fake_module; + PyTypeObject* cached_type = NULL; + fake_module = PyImport_AddModule((char*) "_cython_" CYTHON_ABI); + if (!fake_module) return NULL; + Py_INCREF(fake_module); + cached_type = (PyTypeObject*) PyObject_GetAttrString(fake_module, type->tp_name); + if (cached_type) { + if (!PyType_Check((PyObject*)cached_type)) { + PyErr_Format(PyExc_TypeError, + "Shared Cython type %.200s is not a type object", + type->tp_name); + goto bad; + } + if (cached_type->tp_basicsize != type->tp_basicsize) { + PyErr_Format(PyExc_TypeError, + "Shared Cython type %.200s has the wrong size, try recompiling", + type->tp_name); + goto bad; + } + } else { + if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad; + PyErr_Clear(); + if (PyType_Ready(type) < 0) goto bad; + if (PyObject_SetAttrString(fake_module, type->tp_name, (PyObject*) type) < 0) + goto bad; + Py_INCREF(type); + cached_type = type; + } +done: + Py_DECREF(fake_module); + return cached_type; +bad: + Py_XDECREF(cached_type); + cached_type = NULL; + goto done; +} + +/* CythonFunction */ + static PyObject * +__Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *closure) +{ + if (unlikely(op->func_doc == NULL)) { + if (op->func.m_ml->ml_doc) { +#if PY_MAJOR_VERSION >= 3 + op->func_doc = PyUnicode_FromString(op->func.m_ml->ml_doc); +#else + op->func_doc = PyString_FromString(op->func.m_ml->ml_doc); +#endif + if (unlikely(op->func_doc == NULL)) + return NULL; + } else { + Py_INCREF(Py_None); + return Py_None; + } + } + Py_INCREF(op->func_doc); + return op->func_doc; +} +static int +__Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp = op->func_doc; + if (value == NULL) { + value = Py_None; + } + Py_INCREF(value); + op->func_doc = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op) +{ + if (unlikely(op->func_name == NULL)) { +#if PY_MAJOR_VERSION >= 3 + op->func_name = PyUnicode_InternFromString(op->func.m_ml->ml_name); +#else + op->func_name = PyString_InternFromString(op->func.m_ml->ml_name); +#endif + if (unlikely(op->func_name == NULL)) + return NULL; + } + Py_INCREF(op->func_name); + return op->func_name; +} +static int +__Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp; +#if PY_MAJOR_VERSION >= 3 + if (unlikely(value == NULL || !PyUnicode_Check(value))) { +#else + if (unlikely(value == NULL || !PyString_Check(value))) { +#endif + PyErr_SetString(PyExc_TypeError, + "__name__ must be set to a string object"); + return -1; + } + tmp = op->func_name; + Py_INCREF(value); + op->func_name = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op) +{ + Py_INCREF(op->func_qualname); + return op->func_qualname; +} +static int +__Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp; +#if PY_MAJOR_VERSION >= 3 + if (unlikely(value == NULL || !PyUnicode_Check(value))) { +#else + if (unlikely(value == NULL || !PyString_Check(value))) { +#endif + PyErr_SetString(PyExc_TypeError, + "__qualname__ must be set to a string object"); + return -1; + } + tmp = op->func_qualname; + Py_INCREF(value); + op->func_qualname = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_self(__pyx_CyFunctionObject *m, CYTHON_UNUSED void *closure) +{ + PyObject *self; + self = m->func_closure; + if (self == NULL) + self = Py_None; + Py_INCREF(self); + return self; +} +static PyObject * +__Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op) +{ + if (unlikely(op->func_dict == NULL)) { + op->func_dict = PyDict_New(); + if (unlikely(op->func_dict == NULL)) + return NULL; + } + Py_INCREF(op->func_dict); + return op->func_dict; +} +static int +__Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp; + if (unlikely(value == NULL)) { + PyErr_SetString(PyExc_TypeError, + "function's dictionary may not be deleted"); + return -1; + } + if (unlikely(!PyDict_Check(value))) { + PyErr_SetString(PyExc_TypeError, + "setting function's dictionary to a non-dict"); + return -1; + } + tmp = op->func_dict; + Py_INCREF(value); + op->func_dict = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op) +{ + Py_INCREF(op->func_globals); + return op->func_globals; +} +static PyObject * +__Pyx_CyFunction_get_closure(CYTHON_UNUSED __pyx_CyFunctionObject *op) +{ + Py_INCREF(Py_None); + return Py_None; +} +static PyObject * +__Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op) +{ + PyObject* result = (op->func_code) ? op->func_code : Py_None; + Py_INCREF(result); + return result; +} +static int +__Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) { + int result = 0; + PyObject *res = op->defaults_getter((PyObject *) op); + if (unlikely(!res)) + return -1; + #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + op->defaults_tuple = PyTuple_GET_ITEM(res, 0); + Py_INCREF(op->defaults_tuple); + op->defaults_kwdict = PyTuple_GET_ITEM(res, 1); + Py_INCREF(op->defaults_kwdict); + #else + op->defaults_tuple = PySequence_ITEM(res, 0); + if (unlikely(!op->defaults_tuple)) result = -1; + else { + op->defaults_kwdict = PySequence_ITEM(res, 1); + if (unlikely(!op->defaults_kwdict)) result = -1; + } + #endif + Py_DECREF(res); + return result; +} +static int +__Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value) { + PyObject* tmp; + if (!value) { + value = Py_None; + } else if (value != Py_None && !PyTuple_Check(value)) { + PyErr_SetString(PyExc_TypeError, + "__defaults__ must be set to a tuple object"); + return -1; + } + Py_INCREF(value); + tmp = op->defaults_tuple; + op->defaults_tuple = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op) { + PyObject* result = op->defaults_tuple; + if (unlikely(!result)) { + if (op->defaults_getter) { + if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL; + result = op->defaults_tuple; + } else { + result = Py_None; + } + } + Py_INCREF(result); + return result; +} +static int +__Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value) { + PyObject* tmp; + if (!value) { + value = Py_None; + } else if (value != Py_None && !PyDict_Check(value)) { + PyErr_SetString(PyExc_TypeError, + "__kwdefaults__ must be set to a dict object"); + return -1; + } + Py_INCREF(value); + tmp = op->defaults_kwdict; + op->defaults_kwdict = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op) { + PyObject* result = op->defaults_kwdict; + if (unlikely(!result)) { + if (op->defaults_getter) { + if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL; + result = op->defaults_kwdict; + } else { + result = Py_None; + } + } + Py_INCREF(result); + return result; +} +static int +__Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value) { + PyObject* tmp; + if (!value || value == Py_None) { + value = NULL; + } else if (!PyDict_Check(value)) { + PyErr_SetString(PyExc_TypeError, + "__annotations__ must be set to a dict object"); + return -1; + } + Py_XINCREF(value); + tmp = op->func_annotations; + op->func_annotations = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op) { + PyObject* result = op->func_annotations; + if (unlikely(!result)) { + result = PyDict_New(); + if (unlikely(!result)) return NULL; + op->func_annotations = result; + } + Py_INCREF(result); + return result; +} +static PyGetSetDef __pyx_CyFunction_getsets[] = { + {(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, + {(char *) "__doc__", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, + {(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, + {(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, + {(char *) "__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0}, + {(char *) "__self__", (getter)__Pyx_CyFunction_get_self, 0, 0, 0}, + {(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, + {(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, + {(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, + {(char *) "__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, + {(char *) "func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, + {(char *) "__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, + {(char *) "func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, + {(char *) "__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, + {(char *) "func_defaults", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, + {(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, + {(char *) "__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0}, + {(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0}, + {0, 0, 0, 0, 0} +}; +static PyMemberDef __pyx_CyFunction_members[] = { + {(char *) "__module__", T_OBJECT, offsetof(__pyx_CyFunctionObject, func.m_module), PY_WRITE_RESTRICTED, 0}, + {0, 0, 0, 0, 0} +}; +static PyObject * +__Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, CYTHON_UNUSED PyObject *args) +{ +#if PY_MAJOR_VERSION >= 3 + return PyUnicode_FromString(m->func.m_ml->ml_name); +#else + return PyString_FromString(m->func.m_ml->ml_name); +#endif +} +static PyMethodDef __pyx_CyFunction_methods[] = { + {"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0}, + {0, 0, 0, 0} +}; +#if PY_VERSION_HEX < 0x030500A0 +#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist) +#else +#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func.m_weakreflist) +#endif +static PyObject *__Pyx_CyFunction_New(PyTypeObject *type, PyMethodDef *ml, int flags, PyObject* qualname, + PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { + __pyx_CyFunctionObject *op = PyObject_GC_New(__pyx_CyFunctionObject, type); + if (op == NULL) + return NULL; + op->flags = flags; + __Pyx_CyFunction_weakreflist(op) = NULL; + op->func.m_ml = ml; + op->func.m_self = (PyObject *) op; + Py_XINCREF(closure); + op->func_closure = closure; + Py_XINCREF(module); + op->func.m_module = module; + op->func_dict = NULL; + op->func_name = NULL; + Py_INCREF(qualname); + op->func_qualname = qualname; + op->func_doc = NULL; + op->func_classobj = NULL; + op->func_globals = globals; + Py_INCREF(op->func_globals); + Py_XINCREF(code); + op->func_code = code; + op->defaults_pyobjects = 0; + op->defaults = NULL; + op->defaults_tuple = NULL; + op->defaults_kwdict = NULL; + op->defaults_getter = NULL; + op->func_annotations = NULL; + PyObject_GC_Track(op); + return (PyObject *) op; +} +static int +__Pyx_CyFunction_clear(__pyx_CyFunctionObject *m) +{ + Py_CLEAR(m->func_closure); + Py_CLEAR(m->func.m_module); + Py_CLEAR(m->func_dict); + Py_CLEAR(m->func_name); + Py_CLEAR(m->func_qualname); + Py_CLEAR(m->func_doc); + Py_CLEAR(m->func_globals); + Py_CLEAR(m->func_code); + Py_CLEAR(m->func_classobj); + Py_CLEAR(m->defaults_tuple); + Py_CLEAR(m->defaults_kwdict); + Py_CLEAR(m->func_annotations); + if (m->defaults) { + PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); + int i; + for (i = 0; i < m->defaults_pyobjects; i++) + Py_XDECREF(pydefaults[i]); + PyObject_Free(m->defaults); + m->defaults = NULL; + } + return 0; +} +static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m) +{ + PyObject_GC_UnTrack(m); + if (__Pyx_CyFunction_weakreflist(m) != NULL) + PyObject_ClearWeakRefs((PyObject *) m); + __Pyx_CyFunction_clear(m); + PyObject_GC_Del(m); +} +static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg) +{ + Py_VISIT(m->func_closure); + Py_VISIT(m->func.m_module); + Py_VISIT(m->func_dict); + Py_VISIT(m->func_name); + Py_VISIT(m->func_qualname); + Py_VISIT(m->func_doc); + Py_VISIT(m->func_globals); + Py_VISIT(m->func_code); + Py_VISIT(m->func_classobj); + Py_VISIT(m->defaults_tuple); + Py_VISIT(m->defaults_kwdict); + if (m->defaults) { + PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); + int i; + for (i = 0; i < m->defaults_pyobjects; i++) + Py_VISIT(pydefaults[i]); + } + return 0; +} +static PyObject *__Pyx_CyFunction_descr_get(PyObject *func, PyObject *obj, PyObject *type) +{ + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + if (m->flags & __Pyx_CYFUNCTION_STATICMETHOD) { + Py_INCREF(func); + return func; + } + if (m->flags & __Pyx_CYFUNCTION_CLASSMETHOD) { + if (type == NULL) + type = (PyObject *)(Py_TYPE(obj)); + return __Pyx_PyMethod_New(func, type, (PyObject *)(Py_TYPE(type))); + } + if (obj == Py_None) + obj = NULL; + return __Pyx_PyMethod_New(func, obj, type); +} +static PyObject* +__Pyx_CyFunction_repr(__pyx_CyFunctionObject *op) +{ +#if PY_MAJOR_VERSION >= 3 + return PyUnicode_FromFormat("", + op->func_qualname, (void *)op); +#else + return PyString_FromFormat("", + PyString_AsString(op->func_qualname), (void *)op); +#endif +} +static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, PyObject *arg, PyObject *kw) { + PyCFunctionObject* f = (PyCFunctionObject*)func; + PyCFunction meth = f->m_ml->ml_meth; + Py_ssize_t size; + switch (f->m_ml->ml_flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) { + case METH_VARARGS: + if (likely(kw == NULL || PyDict_Size(kw) == 0)) + return (*meth)(self, arg); + break; + case METH_VARARGS | METH_KEYWORDS: + return (*(PyCFunctionWithKeywords)meth)(self, arg, kw); + case METH_NOARGS: + if (likely(kw == NULL || PyDict_Size(kw) == 0)) { + size = PyTuple_GET_SIZE(arg); + if (likely(size == 0)) + return (*meth)(self, NULL); + PyErr_Format(PyExc_TypeError, + "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", + f->m_ml->ml_name, size); + return NULL; + } + break; + case METH_O: + if (likely(kw == NULL || PyDict_Size(kw) == 0)) { + size = PyTuple_GET_SIZE(arg); + if (likely(size == 1)) { + PyObject *result, *arg0 = PySequence_ITEM(arg, 0); + if (unlikely(!arg0)) return NULL; + result = (*meth)(self, arg0); + Py_DECREF(arg0); + return result; + } + PyErr_Format(PyExc_TypeError, + "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", + f->m_ml->ml_name, size); + return NULL; + } + break; + default: + PyErr_SetString(PyExc_SystemError, "Bad call flags in " + "__Pyx_CyFunction_Call. METH_OLDARGS is no " + "longer supported!"); + return NULL; + } + PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments", + f->m_ml->ml_name); + return NULL; +} +static CYTHON_INLINE PyObject *__Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) { + return __Pyx_CyFunction_CallMethod(func, ((PyCFunctionObject*)func)->m_self, arg, kw); +} +static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, PyObject *kw) { + PyObject *result; + __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *) func; + if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { + Py_ssize_t argc; + PyObject *new_args; + PyObject *self; + argc = PyTuple_GET_SIZE(args); + new_args = PyTuple_GetSlice(args, 1, argc); + if (unlikely(!new_args)) + return NULL; + self = PyTuple_GetItem(args, 0); + if (unlikely(!self)) { + Py_DECREF(new_args); + return NULL; + } + result = __Pyx_CyFunction_CallMethod(func, self, new_args, kw); + Py_DECREF(new_args); + } else { + result = __Pyx_CyFunction_Call(func, args, kw); + } + return result; +} +static PyTypeObject __pyx_CyFunctionType_type = { + PyVarObject_HEAD_INIT(0, 0) + "cython_function_or_method", + sizeof(__pyx_CyFunctionObject), + 0, + (destructor) __Pyx_CyFunction_dealloc, + 0, + 0, + 0, +#if PY_MAJOR_VERSION < 3 + 0, +#else + 0, +#endif + (reprfunc) __Pyx_CyFunction_repr, + 0, + 0, + 0, + 0, + __Pyx_CyFunction_CallAsMethod, + 0, + 0, + 0, + 0, + Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC, + 0, + (traverseproc) __Pyx_CyFunction_traverse, + (inquiry) __Pyx_CyFunction_clear, + 0, +#if PY_VERSION_HEX < 0x030500A0 + offsetof(__pyx_CyFunctionObject, func_weakreflist), +#else + offsetof(PyCFunctionObject, m_weakreflist), +#endif + 0, + 0, + __pyx_CyFunction_methods, + __pyx_CyFunction_members, + __pyx_CyFunction_getsets, + 0, + 0, + __Pyx_CyFunction_descr_get, + 0, + offsetof(__pyx_CyFunctionObject, func_dict), + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, +#if PY_VERSION_HEX >= 0x030400a1 + 0, +#endif +}; +static int __pyx_CyFunction_init(void) { + __pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type); + if (__pyx_CyFunctionType == NULL) { + return -1; + } + return 0; +} +static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->defaults = PyObject_Malloc(size); + if (!m->defaults) + return PyErr_NoMemory(); + memset(m->defaults, 0, size); + m->defaults_pyobjects = pyobjects; + return m->defaults; +} +static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->defaults_tuple = tuple; + Py_INCREF(tuple); +} +static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->defaults_kwdict = dict; + Py_INCREF(dict); +} +static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->func_annotations = dict; + Py_INCREF(dict); +} + /* CLineInTraceback */ - static int __Pyx_CLineForTraceback(int c_line) { + static int __Pyx_CLineForTraceback(int c_line) { #ifdef CYTHON_CLINE_IN_TRACEBACK return ((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0; #else @@ -18300,7 +18444,7 @@ static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tsta } /* CodeObjectCache */ - static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; @@ -18380,7 +18524,7 @@ static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { } /* AddTraceback */ - #include "compile.h" + #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( @@ -18484,8 +18628,8 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif - /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + /* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -18516,7 +18660,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPyVerify */ - #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) @@ -18538,7 +18682,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -18569,7 +18713,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -18600,7 +18744,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); @@ -18620,7 +18764,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -18755,7 +18899,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); @@ -18775,7 +18919,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -18910,7 +19054,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -18941,7 +19085,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -19130,7 +19274,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -19319,7 +19463,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CheckBinaryVersion */ - static int __Pyx_check_binary_version(void) { + static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); @@ -19334,8 +19478,45 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { return 0; } +/* FunctionExport */ + static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig) { + PyObject *d = 0; + PyObject *cobj = 0; + union { + void (*fp)(void); + void *p; + } tmp; + d = PyObject_GetAttrString(__pyx_m, (char *)"__pyx_capi__"); + if (!d) { + PyErr_Clear(); + d = PyDict_New(); + if (!d) + goto bad; + Py_INCREF(d); + if (PyModule_AddObject(__pyx_m, (char *)"__pyx_capi__", d) < 0) + goto bad; + } + tmp.fp = f; +#if PY_VERSION_HEX >= 0x02070000 + cobj = PyCapsule_New(tmp.p, sig, 0); +#else + cobj = PyCObject_FromVoidPtrAndDesc(tmp.p, (void *)sig, 0); +#endif + if (!cobj) + goto bad; + if (PyDict_SetItemString(d, name, cobj) < 0) + goto bad; + Py_DECREF(cobj); + Py_DECREF(d); + return 0; +bad: + Py_XDECREF(cobj); + Py_XDECREF(d); + return -1; +} + /* ModuleImport */ - #ifndef __PYX_HAVE_RT_ImportModule + #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; @@ -19353,7 +19534,7 @@ static PyObject *__Pyx_ImportModule(const char *name) { #endif /* TypeImport */ - #ifndef __PYX_HAVE_RT_ImportType + #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) @@ -19417,62 +19598,8 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class } #endif -/* FunctionImport */ - #ifndef __PYX_HAVE_RT_ImportFunction -#define __PYX_HAVE_RT_ImportFunction -static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (**f)(void), const char *sig) { - PyObject *d = 0; - PyObject *cobj = 0; - union { - void (*fp)(void); - void *p; - } tmp; - d = PyObject_GetAttrString(module, (char *)"__pyx_capi__"); - if (!d) - goto bad; - cobj = PyDict_GetItemString(d, funcname); - if (!cobj) { - PyErr_Format(PyExc_ImportError, - "%.200s does not export expected C function %.200s", - PyModule_GetName(module), funcname); - goto bad; - } -#if PY_VERSION_HEX >= 0x02070000 - if (!PyCapsule_IsValid(cobj, sig)) { - PyErr_Format(PyExc_TypeError, - "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)", - PyModule_GetName(module), funcname, sig, PyCapsule_GetName(cobj)); - goto bad; - } - tmp.p = PyCapsule_GetPointer(cobj, sig); -#else - {const char *desc, *s1, *s2; - desc = (const char *)PyCObject_GetDesc(cobj); - if (!desc) - goto bad; - s1 = desc; s2 = sig; - while (*s1 != '\0' && *s1 == *s2) { s1++; s2++; } - if (*s1 != *s2) { - PyErr_Format(PyExc_TypeError, - "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)", - PyModule_GetName(module), funcname, sig, desc); - goto bad; - } - tmp.p = PyCObject_AsVoidPtr(cobj);} -#endif - *f = tmp.fp; - if (!(*f)) - goto bad; - Py_DECREF(d); - return 0; -bad: - Py_XDECREF(d); - return -1; -} -#endif - /* InitStrings */ - static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { diff --git a/ccd/procedures.pxd b/ccd/procedures.pxd new file mode 100644 index 0000000..9ee2d3d --- /dev/null +++ b/ccd/procedures.pxd @@ -0,0 +1,61 @@ +import numpy as np +cimport numpy as np + +from cpython cimport bool + +ctypedef np.float64_t STYPE_t +ctypedef float FTYPE_t +ctypedef int ITYPE_t +ctypedef bool BTYPE_t +ctypedef np.long_t LTYPE_t + + +cpdef standard_procedure(np.ndarray[LTYPE_t, ndim=1] dates, + np.ndarray[STYPE_t, ndim=2] observations, + object fitter_fn, + np.ndarray[LTYPE_t, ndim=1] quality, + dict proc_params) + +cdef initialize(np.ndarray[LTYPE_t, ndim=1] dates, + np.ndarray[STYPE_t, ndim=2] observations, + object fitter_fn, + slice model_window, + np.ndarray processing_mask, + np.ndarray[STYPE_t, ndim=1] variogram, + dict proc_params, + object lasso) + +cdef lookforward(np.ndarray[LTYPE_t, ndim=1] dates, + np.ndarray[STYPE_t, ndim=2] observations, + slice model_window, + object fitter_fn, + np.ndarray processing_mask, + np.ndarray[STYPE_t, ndim=1] variogram, + dict proc_params, + object lasso) + +cdef lookback(np.ndarray[LTYPE_t, ndim=1] dates, + np.ndarray[STYPE_t, ndim=2] observations, + slice model_window, + list models, + ITYPE_t previous_break, + np.ndarray processing_mask, + np.ndarray[STYPE_t, ndim=1] variogram, + dict proc_params) + +cdef catch(np.ndarray[LTYPE_t, ndim=1] dates, + np.ndarray[STYPE_t, ndim=2] observations, + object fitter_fn, + np.ndarray processing_mask, + slice model_window, + ITYPE_t curve_qa, + dict proc_params, + object lasso) + + + + + + + + diff --git a/ccd/procedures.pyx b/ccd/procedures.py similarity index 94% rename from ccd/procedures.pyx rename to ccd/procedures.py index a17c156..fbd3da1 100644 --- a/ccd/procedures.pyx +++ b/ccd/procedures.py @@ -1,4 +1,3 @@ -# cython: profile=True """Functions for providing the over-arching methodology. Tying together the individual components that make-up the change detection process. This module should really contain any method that could be considered procedural. Methods @@ -25,7 +24,6 @@ """ import logging import numpy as np -cimport numpy as np np_array = np.array np_sum = np.sum @@ -36,16 +34,9 @@ from ccd.models import results_to_changemodel from ccd.math_utils import kelvin_to_celsius, adjusted_variogram, euclidean_norm -from ccd.models.tmask cimport tmask - -from cpython cimport bool - -ctypedef np.float64_t STYPE_t -ctypedef float FTYPE_t -ctypedef int ITYPE_t -ctypedef bool BTYPE_t -ctypedef np.long_t LTYPE_t +from ccd.models.tmask import tmask +#from cpython cimport bool log = logging.getLogger(__name__) @@ -215,11 +206,11 @@ def insufficient_clear_procedure(dates, observations, fitter_fn, quality, return (result,), processing_mask -cpdef tuple standard_procedure(np.ndarray[LTYPE_t, ndim=1] dates, - np.ndarray[STYPE_t, ndim=2] observations, - object fitter_fn, - np.ndarray[LTYPE_t, ndim=1] quality, - dict proc_params): +def standard_procedure(dates, + observations, + fitter_fn, + quality, + proc_params): """ Runs the core change detection algorithm. @@ -380,14 +371,14 @@ def insufficient_clear_procedure(dates, observations, fitter_fn, quality, return results, processing_mask -cdef tuple initialize(np.ndarray[LTYPE_t, ndim=1] dates, - np.ndarray[STYPE_t, ndim=2] observations, - object fitter_fn, - slice model_window, - np.ndarray processing_mask, - np.ndarray[STYPE_t, ndim=1] variogram, - dict proc_params, - object lasso): +def initialize(dates, + observations, + fitter_fn, + model_window, + processing_mask, + variogram, + proc_params, + lasso): """ Determine a good starting point at which to build off of for the subsequent process of change detection, both forward and backward. @@ -505,14 +496,14 @@ def insufficient_clear_procedure(dates, observations, fitter_fn, quality, return model_window, models, processing_mask -cdef tuple lookforward(np.ndarray[LTYPE_t, ndim=1] dates, - np.ndarray[STYPE_t, ndim=2] observations, - slice model_window, - object fitter_fn, - np.ndarray processing_mask, - np.ndarray[STYPE_t, ndim=1] variogram, - dict proc_params, - object lasso): +def lookforward(dates, + observations, + model_window, + fitter_fn, + processing_mask, + variogram, + proc_params, + lasso): """Increase observation window until change is detected or we are out of observations. @@ -691,14 +682,14 @@ def insufficient_clear_procedure(dates, observations, fitter_fn, quality, return result, processing_mask, model_window -cdef tuple lookback(np.ndarray[LTYPE_t, ndim=1] dates, - np.ndarray[STYPE_t, ndim=2] observations, - slice model_window, - list models, - ITYPE_t previous_break, - np.ndarray processing_mask, - np.ndarray[STYPE_t, ndim=1] variogram, - dict proc_params): +def lookback(dates, + observations, + model_window, + models, + previous_break, + processing_mask, + variogram, + proc_params): """ Special case when there is a gap between the start of a time series model and the previous model break point, this can include values that were @@ -790,14 +781,14 @@ def insufficient_clear_procedure(dates, observations, fitter_fn, quality, return model_window, processing_mask -cdef catch(np.ndarray[LTYPE_t, ndim=1] dates, - np.ndarray[STYPE_t, ndim=2] observations, - object fitter_fn, - np.ndarray processing_mask, - slice model_window, - ITYPE_t curve_qa, - dict proc_params, - object lasso): +def catch(dates, + observations, + fitter_fn, + processing_mask, + model_window, + curve_qa, + proc_params, + lasso): """ Handle special cases where general models just need to be fitted and return their results. diff --git a/setup.py b/setup.py index e659aa6..4378c28 100644 --- a/setup.py +++ b/setup.py @@ -22,7 +22,7 @@ try: import cython USE_CYTHON = True - EXT_TYPE = ".pyx" + EXT_TYPE = ".py" except ImportError: print("Cython unavailable") @@ -30,7 +30,8 @@ Extension('ccd.models.robust_fit', ['ccd/models/robust_fit'+EXT_TYPE], include_dirs=[np_incl]), Extension('ccd.models.tmask', ['ccd/models/tmask'+EXT_TYPE], include_dirs=[np_incl]), Extension('ccd.procedures', ['ccd/procedures'+EXT_TYPE], include_dirs=[np_incl]), - Extension('test.test_models', ['test/test_models' + EXT_TYPE], include_dirs=[np_incl])] + # Extension('test.test_models', ['test/test_models' + EXT_TYPE], include_dirs=[np_incl]) + ] if USE_CYTHON: from Cython.Build import cythonize diff --git a/test/test_models.pyx b/test/test_models.py similarity index 77% rename from test/test_models.pyx rename to test/test_models.py index 79792d9..a57bc13 100644 --- a/test/test_models.pyx +++ b/test/test_models.py @@ -3,12 +3,12 @@ """ import numpy as np -cimport numpy as np +#cimport numpy as np from test.shared import read_data from ccd import models -from ccd.models.lasso cimport coefficient_matrix +from ccd.models.lasso import coefficient_matrix def coefficient_matrix_wrap(dates, ady, coefs): From cd9f78b050b5c5040272fdc65c1e1b77768e4571 Mon Sep 17 00:00:00 2001 From: clay austin Date: Tue, 29 Aug 2017 07:53:09 -0500 Subject: [PATCH 41/45] cpdef tmask tmask --- ccd/models/tmask.c | 1148 +++++++++++++++++++++++++++++++++++++++++- ccd/models/tmask.pxd | 2 +- 2 files changed, 1127 insertions(+), 23 deletions(-) diff --git a/ccd/models/tmask.c b/ccd/models/tmask.c index f659d8f..6db1402 100644 --- a/ccd/models/tmask.c +++ b/ccd/models/tmask.c @@ -1210,6 +1210,22 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject #define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) #endif +/* RaiseArgTupleInvalid.proto */ +static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, + Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); + +/* RaiseDoubleKeywords.proto */ +static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); + +/* ParseKeywords.proto */ +static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ + PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\ + const char* function_name); + +/* ArgTypeTest.proto */ +static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, + const char *name, int exact); + /* RaiseException.proto */ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); @@ -1276,6 +1292,63 @@ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); /* ImportFrom.proto */ static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); +/* FetchCommonType.proto */ +static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type); + +/* CythonFunction.proto */ +#define __Pyx_CyFunction_USED 1 +#include +#define __Pyx_CYFUNCTION_STATICMETHOD 0x01 +#define __Pyx_CYFUNCTION_CLASSMETHOD 0x02 +#define __Pyx_CYFUNCTION_CCLASS 0x04 +#define __Pyx_CyFunction_GetClosure(f)\ + (((__pyx_CyFunctionObject *) (f))->func_closure) +#define __Pyx_CyFunction_GetClassObj(f)\ + (((__pyx_CyFunctionObject *) (f))->func_classobj) +#define __Pyx_CyFunction_Defaults(type, f)\ + ((type *)(((__pyx_CyFunctionObject *) (f))->defaults)) +#define __Pyx_CyFunction_SetDefaultsGetter(f, g)\ + ((__pyx_CyFunctionObject *) (f))->defaults_getter = (g) +typedef struct { + PyCFunctionObject func; +#if PY_VERSION_HEX < 0x030500A0 + PyObject *func_weakreflist; +#endif + PyObject *func_dict; + PyObject *func_name; + PyObject *func_qualname; + PyObject *func_doc; + PyObject *func_globals; + PyObject *func_code; + PyObject *func_closure; + PyObject *func_classobj; + void *defaults; + int defaults_pyobjects; + int flags; + PyObject *defaults_tuple; + PyObject *defaults_kwdict; + PyObject *(*defaults_getter)(PyObject *); + PyObject *func_annotations; +} __pyx_CyFunctionObject; +static PyTypeObject *__pyx_CyFunctionType = 0; +#define __Pyx_CyFunction_NewEx(ml, flags, qualname, self, module, globals, code)\ + __Pyx_CyFunction_New(__pyx_CyFunctionType, ml, flags, qualname, self, module, globals, code) +static PyObject *__Pyx_CyFunction_New(PyTypeObject *, PyMethodDef *ml, + int flags, PyObject* qualname, + PyObject *self, + PyObject *module, PyObject *globals, + PyObject* code); +static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *m, + size_t size, + int pyobjects); +static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *m, + PyObject *tuple); +static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m, + PyObject *dict); +static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m, + PyObject *dict); +static int __pyx_CyFunction_init(void); + /* CLineInTraceback.proto */ static int __Pyx_CLineForTraceback(int c_line); @@ -1563,6 +1636,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, cha /* Module declarations from 'ccd.models.tmask' */ static PyArrayObject *__pyx_f_3ccd_6models_5tmask_tmask_coefficient_matrix(PyArrayObject *, __pyx_t_3ccd_6models_5tmask_FTYPE_t); /*proto*/ +static PyArrayObject *__pyx_f_3ccd_6models_5tmask_tmask(PyArrayObject *, PyArrayObject *, PyArrayObject *, PyObject *, __pyx_t_3ccd_6models_5tmask_FTYPE_t, __pyx_t_3ccd_6models_5tmask_FTYPE_t, int __pyx_skip_dispatch); /*proto*/ static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5tmask_LTYPE_t = { "LTYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_5tmask_LTYPE_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_3ccd_6models_5tmask_LTYPE_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_3ccd_6models_5tmask_LTYPE_t), 0 }; static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5tmask_STYPE_t = { "STYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_5tmask_STYPE_t), { 0 }, 0, 'R', 0, 0 }; #define __Pyx_MODULE_NAME "ccd.models.tmask" @@ -1585,19 +1659,28 @@ static const char __pyx_k_ceil[] = "ceil"; static const char __pyx_k_main[] = "__main__"; static const char __pyx_k_ones[] = "ones"; static const char __pyx_k_test[] = "__test__"; +static const char __pyx_k_bands[] = "bands"; +static const char __pyx_k_dates[] = "dates"; static const char __pyx_k_dtype[] = "dtype"; static const char __pyx_k_numpy[] = "numpy"; static const char __pyx_k_order[] = "order"; static const char __pyx_k_range[] = "range"; static const char __pyx_k_shape[] = "shape"; +static const char __pyx_k_tmask[] = "tmask"; static const char __pyx_k_zeros[] = "zeros"; static const char __pyx_k_import[] = "__import__"; static const char __pyx_k_maxiter[] = "maxiter"; static const char __pyx_k_predict[] = "predict"; +static const char __pyx_k_t_const[] = "t_const"; +static const char __pyx_k_variogram[] = "variogram"; static const char __pyx_k_ValueError[] = "ValueError"; static const char __pyx_k_ImportError[] = "ImportError"; +static const char __pyx_k_avg_days_yr[] = "avg_days_yr"; static const char __pyx_k_RuntimeError[] = "RuntimeError"; +static const char __pyx_k_observations[] = "observations"; +static const char __pyx_k_ccd_models_tmask[] = "ccd.models.tmask"; static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; +static const char __pyx_k_ccd_models_tmask_py[] = "ccd/models/tmask.py"; static const char __pyx_k_ccd_models_robust_fit[] = "ccd.models.robust_fit"; static const char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import"; @@ -1616,10 +1699,15 @@ static PyObject *__pyx_n_s_RLM; static PyObject *__pyx_n_s_RuntimeError; static PyObject *__pyx_n_s_ValueError; static PyObject *__pyx_n_s_abs; +static PyObject *__pyx_n_s_avg_days_yr; +static PyObject *__pyx_n_s_bands; static PyObject *__pyx_n_s_ccd_models_robust_fit; +static PyObject *__pyx_n_s_ccd_models_tmask; +static PyObject *__pyx_kp_s_ccd_models_tmask_py; static PyObject *__pyx_n_s_ceil; static PyObject *__pyx_n_s_cline_in_traceback; static PyObject *__pyx_n_s_cos; +static PyObject *__pyx_n_s_dates; static PyObject *__pyx_n_s_dtype; static PyObject *__pyx_n_s_fit; static PyObject *__pyx_n_s_import; @@ -1631,6 +1719,7 @@ static PyObject *__pyx_n_s_np; static PyObject *__pyx_n_s_numpy; static PyObject *__pyx_kp_s_numpy_core_multiarray_failed_to; static PyObject *__pyx_kp_s_numpy_core_umath_failed_to_impor; +static PyObject *__pyx_n_s_observations; static PyObject *__pyx_n_s_ones; static PyObject *__pyx_n_s_order; static PyObject *__pyx_n_s_pi; @@ -1638,9 +1727,13 @@ static PyObject *__pyx_n_s_predict; static PyObject *__pyx_n_s_range; static PyObject *__pyx_n_s_shape; static PyObject *__pyx_n_s_sin; +static PyObject *__pyx_n_s_t_const; static PyObject *__pyx_n_s_test; +static PyObject *__pyx_n_s_tmask; static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd; +static PyObject *__pyx_n_s_variogram; static PyObject *__pyx_n_s_zeros; +static PyObject *__pyx_pf_3ccd_6models_5tmask_tmask(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_dates, PyArrayObject *__pyx_v_observations, PyArrayObject *__pyx_v_variogram, PyObject *__pyx_v_bands, __pyx_t_3ccd_6models_5tmask_FTYPE_t __pyx_v_t_const, __pyx_t_3ccd_6models_5tmask_FTYPE_t __pyx_v_avg_days_yr); /* proto */ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ static PyObject *__pyx_int_0; @@ -1665,6 +1758,8 @@ static PyObject *__pyx_tuple__14; static PyObject *__pyx_tuple__15; static PyObject *__pyx_tuple__16; static PyObject *__pyx_tuple__17; 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+ __pyx_L2:; + __Pyx_XGIVEREF(__pyx_r); + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + /* "../../miniconda2/envs/ccd35/lib/python3.5/site-packages/Cython/Includes/numpy/__init__.pxd":197 * # experimental exception made for __getbuffer__ and __releasebuffer__ * # -- the details of this may change. @@ -5109,10 +5389,15 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_RuntimeError, __pyx_k_RuntimeError, sizeof(__pyx_k_RuntimeError), 0, 0, 1, 1}, {&__pyx_n_s_ValueError, __pyx_k_ValueError, sizeof(__pyx_k_ValueError), 0, 0, 1, 1}, {&__pyx_n_s_abs, __pyx_k_abs, sizeof(__pyx_k_abs), 0, 0, 1, 1}, + {&__pyx_n_s_avg_days_yr, __pyx_k_avg_days_yr, sizeof(__pyx_k_avg_days_yr), 0, 0, 1, 1}, + {&__pyx_n_s_bands, __pyx_k_bands, sizeof(__pyx_k_bands), 0, 0, 1, 1}, {&__pyx_n_s_ccd_models_robust_fit, __pyx_k_ccd_models_robust_fit, sizeof(__pyx_k_ccd_models_robust_fit), 0, 0, 1, 1}, + {&__pyx_n_s_ccd_models_tmask, __pyx_k_ccd_models_tmask, sizeof(__pyx_k_ccd_models_tmask), 0, 0, 1, 1}, + {&__pyx_kp_s_ccd_models_tmask_py, __pyx_k_ccd_models_tmask_py, sizeof(__pyx_k_ccd_models_tmask_py), 0, 0, 1, 0}, {&__pyx_n_s_ceil, __pyx_k_ceil, sizeof(__pyx_k_ceil), 0, 0, 1, 1}, {&__pyx_n_s_cline_in_traceback, __pyx_k_cline_in_traceback, sizeof(__pyx_k_cline_in_traceback), 0, 0, 1, 1}, {&__pyx_n_s_cos, __pyx_k_cos, sizeof(__pyx_k_cos), 0, 0, 1, 1}, + {&__pyx_n_s_dates, __pyx_k_dates, sizeof(__pyx_k_dates), 0, 0, 1, 1}, {&__pyx_n_s_dtype, __pyx_k_dtype, sizeof(__pyx_k_dtype), 0, 0, 1, 1}, {&__pyx_n_s_fit, __pyx_k_fit, sizeof(__pyx_k_fit), 0, 0, 1, 1}, {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1}, @@ -5124,6 +5409,7 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_numpy, __pyx_k_numpy, sizeof(__pyx_k_numpy), 0, 0, 1, 1}, {&__pyx_kp_s_numpy_core_multiarray_failed_to, __pyx_k_numpy_core_multiarray_failed_to, sizeof(__pyx_k_numpy_core_multiarray_failed_to), 0, 0, 1, 0}, {&__pyx_kp_s_numpy_core_umath_failed_to_impor, __pyx_k_numpy_core_umath_failed_to_impor, sizeof(__pyx_k_numpy_core_umath_failed_to_impor), 0, 0, 1, 0}, + {&__pyx_n_s_observations, __pyx_k_observations, sizeof(__pyx_k_observations), 0, 0, 1, 1}, {&__pyx_n_s_ones, __pyx_k_ones, sizeof(__pyx_k_ones), 0, 0, 1, 1}, {&__pyx_n_s_order, __pyx_k_order, sizeof(__pyx_k_order), 0, 0, 1, 1}, {&__pyx_n_s_pi, __pyx_k_pi, sizeof(__pyx_k_pi), 0, 0, 1, 1}, @@ -5131,8 +5417,11 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_range, __pyx_k_range, sizeof(__pyx_k_range), 0, 0, 1, 1}, {&__pyx_n_s_shape, __pyx_k_shape, sizeof(__pyx_k_shape), 0, 0, 1, 1}, {&__pyx_n_s_sin, __pyx_k_sin, sizeof(__pyx_k_sin), 0, 0, 1, 1}, + {&__pyx_n_s_t_const, __pyx_k_t_const, sizeof(__pyx_k_t_const), 0, 0, 1, 1}, {&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1}, + {&__pyx_n_s_tmask, __pyx_k_tmask, sizeof(__pyx_k_tmask), 0, 0, 1, 1}, {&__pyx_kp_u_unknown_dtype_code_in_numpy_pxd, __pyx_k_unknown_dtype_code_in_numpy_pxd, sizeof(__pyx_k_unknown_dtype_code_in_numpy_pxd), 0, 1, 0, 0}, + {&__pyx_n_s_variogram, __pyx_k_variogram, sizeof(__pyx_k_variogram), 0, 0, 1, 1}, {&__pyx_n_s_zeros, __pyx_k_zeros, sizeof(__pyx_k_zeros), 0, 0, 1, 1}, {0, 0, 0, 0, 0, 0, 0} }; @@ -5302,6 +5591,18 @@ static int __Pyx_InitCachedConstants(void) { __pyx_tuple__17 = PyTuple_Pack(1, __pyx_kp_s_numpy_core_umath_failed_to_impor); if (unlikely(!__pyx_tuple__17)) __PYX_ERR(1, 1001, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__17); __Pyx_GIVEREF(__pyx_tuple__17); + + /* "ccd/models/tmask.py":32 + * + * + * def tmask(dates, # <<<<<<<<<<<<<< + * observations, + * variogram, + */ + __pyx_tuple__18 = PyTuple_Pack(6, __pyx_n_s_dates, __pyx_n_s_observations, __pyx_n_s_variogram, __pyx_n_s_bands, __pyx_n_s_t_const, __pyx_n_s_avg_days_yr); if (unlikely(!__pyx_tuple__18)) __PYX_ERR(0, 32, __pyx_L1_error) + __Pyx_GOTREF(__pyx_tuple__18); + __Pyx_GIVEREF(__pyx_tuple__18); + __pyx_codeobj__19 = (PyObject*)__Pyx_PyCode_New(6, 0, 6, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__18, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_ccd_models_tmask_py, __pyx_n_s_tmask, 32, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__19)) __PYX_ERR(0, 32, __pyx_L1_error) __Pyx_RefNannyFinishContext(); return 0; __pyx_L1_error:; @@ -5407,7 +5708,7 @@ PyMODINIT_FUNC PyInit_tmask(void) /*--- Variable export code ---*/ /*--- Function export code ---*/ if (__Pyx_ExportFunction("tmask_coefficient_matrix", (void (*)(void))__pyx_f_3ccd_6models_5tmask_tmask_coefficient_matrix, "PyArrayObject *(PyArrayObject *, __pyx_t_3ccd_6models_5tmask_FTYPE_t)") < 0) __PYX_ERR(0, 1, __pyx_L1_error) - if (__Pyx_ExportFunction("tmask", (void (*)(void))__pyx_f_3ccd_6models_5tmask_tmask, "PyArrayObject *(PyArrayObject *, PyArrayObject *, PyArrayObject *, PyObject *, __pyx_t_3ccd_6models_5tmask_FTYPE_t, __pyx_t_3ccd_6models_5tmask_FTYPE_t)") < 0) __PYX_ERR(0, 1, __pyx_L1_error) + if (__Pyx_ExportFunction("tmask", (void (*)(void))__pyx_f_3ccd_6models_5tmask_tmask, "PyArrayObject *(PyArrayObject *, PyArrayObject *, PyArrayObject *, PyObject *, __pyx_t_3ccd_6models_5tmask_FTYPE_t, __pyx_t_3ccd_6models_5tmask_FTYPE_t, int __pyx_skip_dispatch)") < 0) __PYX_ERR(0, 1, __pyx_L1_error) /*--- Type init code ---*/ /*--- Type import code ---*/ __pyx_ptype_7cpython_4type_type = __Pyx_ImportType(__Pyx_BUILTIN_MODULE_NAME, "type", @@ -5463,6 +5764,18 @@ PyMODINIT_FUNC PyInit_tmask(void) __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; + /* "ccd/models/tmask.py":32 + * + * + * def tmask(dates, # <<<<<<<<<<<<<< + * observations, + * variogram, + */ + __pyx_t_2 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ccd_6models_5tmask_1tmask, 0, __pyx_n_s_tmask, NULL, __pyx_n_s_ccd_models_tmask, __pyx_d, ((PyObject *)__pyx_codeobj__19)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 32, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_2); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_tmask, __pyx_t_2) < 0) __PYX_ERR(0, 32, __pyx_L1_error) + __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; + /* "ccd/models/tmask.py":1 * #import logging # <<<<<<<<<<<<<< * import numpy as np @@ -6370,6 +6683,175 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject } #endif +/* RaiseArgTupleInvalid */ + static void __Pyx_RaiseArgtupleInvalid( + const char* func_name, + int exact, + Py_ssize_t num_min, + Py_ssize_t num_max, + Py_ssize_t num_found) +{ + Py_ssize_t num_expected; + const char *more_or_less; + if (num_found < num_min) { + num_expected = num_min; + more_or_less = "at least"; + } else { + num_expected = num_max; + more_or_less = "at most"; + } + if (exact) { + more_or_less = "exactly"; + } + PyErr_Format(PyExc_TypeError, + "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", + func_name, more_or_less, num_expected, + (num_expected == 1) ? "" : "s", num_found); +} + +/* RaiseDoubleKeywords */ + static void __Pyx_RaiseDoubleKeywordsError( + const char* func_name, + PyObject* kw_name) +{ + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION >= 3 + "%s() got multiple values for keyword argument '%U'", func_name, kw_name); + #else + "%s() got multiple values for keyword argument '%s'", func_name, + PyString_AsString(kw_name)); + #endif +} + +/* ParseKeywords */ + static int __Pyx_ParseOptionalKeywords( + PyObject *kwds, + PyObject **argnames[], + PyObject *kwds2, + PyObject *values[], + Py_ssize_t num_pos_args, + const char* function_name) +{ + PyObject *key = 0, *value = 0; + Py_ssize_t pos = 0; + PyObject*** name; + PyObject*** first_kw_arg = argnames + num_pos_args; + while (PyDict_Next(kwds, &pos, &key, &value)) { + name = first_kw_arg; + while (*name && (**name != key)) name++; + if (*name) { + values[name-argnames] = value; + continue; + } + name = first_kw_arg; + #if PY_MAJOR_VERSION < 3 + if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) { + while (*name) { + if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) + && _PyString_Eq(**name, key)) { + values[name-argnames] = value; + break; + } + name++; + } + if (*name) continue; + else { + PyObject*** argname = argnames; + while (argname != first_kw_arg) { + if ((**argname == key) || ( + (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) + && _PyString_Eq(**argname, key))) { + goto arg_passed_twice; + } + argname++; + } + } + } else + #endif + if (likely(PyUnicode_Check(key))) { + while (*name) { + int cmp = (**name == key) ? 0 : + #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 + (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : + #endif + PyUnicode_Compare(**name, key); + if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; + if (cmp == 0) { + values[name-argnames] = value; + break; + } + name++; + } + if (*name) continue; + else { + PyObject*** argname = argnames; + while (argname != first_kw_arg) { + int cmp = (**argname == key) ? 0 : + #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 + (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : + #endif + PyUnicode_Compare(**argname, key); + if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; + if (cmp == 0) goto arg_passed_twice; + argname++; + } + } + } else + goto invalid_keyword_type; + if (kwds2) { + if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; + } else { + goto invalid_keyword; + } + } + return 0; +arg_passed_twice: + __Pyx_RaiseDoubleKeywordsError(function_name, key); + goto bad; +invalid_keyword_type: + PyErr_Format(PyExc_TypeError, + "%.200s() keywords must be strings", function_name); + goto bad; +invalid_keyword: + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION < 3 + "%.200s() got an unexpected keyword argument '%.200s'", + function_name, PyString_AsString(key)); + #else + "%s() got an unexpected keyword argument '%U'", + function_name, key); + #endif +bad: + return -1; +} + +/* ArgTypeTest */ + static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { + PyErr_Format(PyExc_TypeError, + "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", + name, type->tp_name, Py_TYPE(obj)->tp_name); +} +static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, + const char *name, int exact) +{ + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + if (none_allowed && obj == Py_None) return 1; + else if (exact) { + if (likely(Py_TYPE(obj) == type)) return 1; + #if PY_MAJOR_VERSION == 2 + else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; + #endif + } + else { + if (likely(PyObject_TypeCheck(obj, type))) return 1; + } + __Pyx_RaiseArgumentTypeInvalid(name, obj, type); + return 0; +} + /* RaiseException */ #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, @@ -6734,8 +7216,630 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) return value; } +/* FetchCommonType */ + static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) { + PyObject* fake_module; + PyTypeObject* cached_type = NULL; + fake_module = PyImport_AddModule((char*) "_cython_" CYTHON_ABI); + if (!fake_module) return NULL; + Py_INCREF(fake_module); + cached_type = (PyTypeObject*) PyObject_GetAttrString(fake_module, type->tp_name); + if (cached_type) { + if (!PyType_Check((PyObject*)cached_type)) { + PyErr_Format(PyExc_TypeError, + "Shared Cython type %.200s is not a type object", + type->tp_name); + goto bad; + } + if (cached_type->tp_basicsize != type->tp_basicsize) { + PyErr_Format(PyExc_TypeError, + "Shared Cython type %.200s has the wrong size, try recompiling", + type->tp_name); + goto bad; + } + } else { + if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad; + PyErr_Clear(); + if (PyType_Ready(type) < 0) goto bad; + if (PyObject_SetAttrString(fake_module, type->tp_name, (PyObject*) type) < 0) + goto bad; + Py_INCREF(type); + cached_type = type; + } +done: + Py_DECREF(fake_module); + return cached_type; +bad: + Py_XDECREF(cached_type); + cached_type = NULL; + goto done; +} + +/* CythonFunction */ + static PyObject * +__Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *closure) +{ + if (unlikely(op->func_doc == NULL)) { + if (op->func.m_ml->ml_doc) { +#if PY_MAJOR_VERSION >= 3 + op->func_doc = PyUnicode_FromString(op->func.m_ml->ml_doc); +#else + op->func_doc = PyString_FromString(op->func.m_ml->ml_doc); +#endif + if (unlikely(op->func_doc == NULL)) + return NULL; + } else { + Py_INCREF(Py_None); + return Py_None; + } + } + Py_INCREF(op->func_doc); + return op->func_doc; +} +static int +__Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp = op->func_doc; + if (value == NULL) { + value = Py_None; + } + Py_INCREF(value); + op->func_doc = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op) +{ + if (unlikely(op->func_name == NULL)) { +#if PY_MAJOR_VERSION >= 3 + op->func_name = PyUnicode_InternFromString(op->func.m_ml->ml_name); +#else + op->func_name = PyString_InternFromString(op->func.m_ml->ml_name); +#endif + if (unlikely(op->func_name == NULL)) + return NULL; + } + Py_INCREF(op->func_name); + return op->func_name; +} +static int +__Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp; +#if PY_MAJOR_VERSION >= 3 + if (unlikely(value == NULL || !PyUnicode_Check(value))) { +#else + if (unlikely(value == NULL || !PyString_Check(value))) { +#endif + PyErr_SetString(PyExc_TypeError, + "__name__ must be set to a string object"); + return -1; + } + tmp = op->func_name; + Py_INCREF(value); + op->func_name = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op) +{ + Py_INCREF(op->func_qualname); + return op->func_qualname; +} +static int +__Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp; +#if PY_MAJOR_VERSION >= 3 + if (unlikely(value == NULL || !PyUnicode_Check(value))) { +#else + if (unlikely(value == NULL || !PyString_Check(value))) { +#endif + PyErr_SetString(PyExc_TypeError, + "__qualname__ must be set to a string object"); + return -1; + } + tmp = op->func_qualname; + Py_INCREF(value); + op->func_qualname = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_self(__pyx_CyFunctionObject *m, CYTHON_UNUSED void *closure) +{ + PyObject *self; + self = m->func_closure; + if (self == NULL) + self = Py_None; + Py_INCREF(self); + return self; +} +static PyObject * +__Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op) +{ + if (unlikely(op->func_dict == NULL)) { + op->func_dict = PyDict_New(); + if (unlikely(op->func_dict == NULL)) + return NULL; + } + Py_INCREF(op->func_dict); + return op->func_dict; +} +static int +__Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value) +{ + PyObject *tmp; + if (unlikely(value == NULL)) { + PyErr_SetString(PyExc_TypeError, + "function's dictionary may not be deleted"); + return -1; + } + if (unlikely(!PyDict_Check(value))) { + PyErr_SetString(PyExc_TypeError, + "setting function's dictionary to a non-dict"); + return -1; + } + tmp = op->func_dict; + Py_INCREF(value); + op->func_dict = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op) +{ + Py_INCREF(op->func_globals); + return op->func_globals; +} +static PyObject * +__Pyx_CyFunction_get_closure(CYTHON_UNUSED __pyx_CyFunctionObject *op) +{ + Py_INCREF(Py_None); + return Py_None; +} +static PyObject * +__Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op) +{ + PyObject* result = (op->func_code) ? op->func_code : Py_None; + Py_INCREF(result); + return result; +} +static int +__Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) { + int result = 0; + PyObject *res = op->defaults_getter((PyObject *) op); + if (unlikely(!res)) + return -1; + #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + op->defaults_tuple = PyTuple_GET_ITEM(res, 0); + Py_INCREF(op->defaults_tuple); + op->defaults_kwdict = PyTuple_GET_ITEM(res, 1); + Py_INCREF(op->defaults_kwdict); + #else + op->defaults_tuple = PySequence_ITEM(res, 0); + if (unlikely(!op->defaults_tuple)) result = -1; + else { + op->defaults_kwdict = PySequence_ITEM(res, 1); + if (unlikely(!op->defaults_kwdict)) result = -1; + } + #endif + Py_DECREF(res); + return result; +} +static int +__Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value) { + PyObject* tmp; + if (!value) { + value = Py_None; + } else if (value != Py_None && !PyTuple_Check(value)) { + PyErr_SetString(PyExc_TypeError, + "__defaults__ must be set to a tuple object"); + return -1; + } + Py_INCREF(value); + tmp = op->defaults_tuple; + op->defaults_tuple = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op) { + PyObject* result = op->defaults_tuple; + if (unlikely(!result)) { + if (op->defaults_getter) { + if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL; + result = op->defaults_tuple; + } else { + result = Py_None; + } + } + Py_INCREF(result); + return result; +} +static int +__Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value) { + PyObject* tmp; + if (!value) { + value = Py_None; + } else if (value != Py_None && !PyDict_Check(value)) { + PyErr_SetString(PyExc_TypeError, + "__kwdefaults__ must be set to a dict object"); + return -1; + } + Py_INCREF(value); + tmp = op->defaults_kwdict; + op->defaults_kwdict = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op) { + PyObject* result = op->defaults_kwdict; + if (unlikely(!result)) { + if (op->defaults_getter) { + if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL; + result = op->defaults_kwdict; + } else { + result = Py_None; + } + } + Py_INCREF(result); + return result; +} +static int +__Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value) { + PyObject* tmp; + if (!value || value == Py_None) { + value = NULL; + } else if (!PyDict_Check(value)) { + PyErr_SetString(PyExc_TypeError, + "__annotations__ must be set to a dict object"); + return -1; + } + Py_XINCREF(value); + tmp = op->func_annotations; + op->func_annotations = value; + Py_XDECREF(tmp); + return 0; +} +static PyObject * +__Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op) { + PyObject* result = op->func_annotations; + if (unlikely(!result)) { + result = PyDict_New(); + if (unlikely(!result)) return NULL; + op->func_annotations = result; + } + Py_INCREF(result); + return result; +} +static PyGetSetDef __pyx_CyFunction_getsets[] = { + {(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, + {(char *) "__doc__", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, + {(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, + {(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, + {(char *) "__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0}, + {(char *) "__self__", (getter)__Pyx_CyFunction_get_self, 0, 0, 0}, + {(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, + {(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, + {(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, + {(char *) "__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, + {(char *) "func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, + {(char *) "__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, + {(char *) "func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, + {(char *) "__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, + {(char *) "func_defaults", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, + {(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, + {(char *) "__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0}, + {(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0}, + {0, 0, 0, 0, 0} +}; +static PyMemberDef __pyx_CyFunction_members[] = { + {(char *) "__module__", T_OBJECT, offsetof(__pyx_CyFunctionObject, func.m_module), PY_WRITE_RESTRICTED, 0}, + {0, 0, 0, 0, 0} +}; +static PyObject * +__Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, CYTHON_UNUSED PyObject *args) +{ +#if PY_MAJOR_VERSION >= 3 + return PyUnicode_FromString(m->func.m_ml->ml_name); +#else + return PyString_FromString(m->func.m_ml->ml_name); +#endif +} +static PyMethodDef __pyx_CyFunction_methods[] = { + {"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0}, + {0, 0, 0, 0} +}; +#if PY_VERSION_HEX < 0x030500A0 +#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist) +#else +#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func.m_weakreflist) +#endif +static PyObject *__Pyx_CyFunction_New(PyTypeObject *type, PyMethodDef *ml, int flags, PyObject* qualname, + PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { + __pyx_CyFunctionObject *op = PyObject_GC_New(__pyx_CyFunctionObject, type); + if (op == NULL) + return NULL; + op->flags = flags; + __Pyx_CyFunction_weakreflist(op) = NULL; + op->func.m_ml = ml; + op->func.m_self = (PyObject *) op; + Py_XINCREF(closure); + op->func_closure = closure; + Py_XINCREF(module); + op->func.m_module = module; + op->func_dict = NULL; + op->func_name = NULL; + Py_INCREF(qualname); + op->func_qualname = qualname; + op->func_doc = NULL; + op->func_classobj = NULL; + op->func_globals = globals; + Py_INCREF(op->func_globals); + Py_XINCREF(code); + op->func_code = code; + op->defaults_pyobjects = 0; + op->defaults = NULL; + op->defaults_tuple = NULL; + op->defaults_kwdict = NULL; + op->defaults_getter = NULL; + op->func_annotations = NULL; + PyObject_GC_Track(op); + return (PyObject *) op; +} +static int +__Pyx_CyFunction_clear(__pyx_CyFunctionObject *m) +{ + Py_CLEAR(m->func_closure); + Py_CLEAR(m->func.m_module); + Py_CLEAR(m->func_dict); + Py_CLEAR(m->func_name); + Py_CLEAR(m->func_qualname); + Py_CLEAR(m->func_doc); + Py_CLEAR(m->func_globals); + Py_CLEAR(m->func_code); + Py_CLEAR(m->func_classobj); + Py_CLEAR(m->defaults_tuple); + Py_CLEAR(m->defaults_kwdict); + Py_CLEAR(m->func_annotations); + if (m->defaults) { + PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); + int i; + for (i = 0; i < m->defaults_pyobjects; i++) + Py_XDECREF(pydefaults[i]); + PyObject_Free(m->defaults); + m->defaults = NULL; + } + return 0; +} +static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m) +{ + PyObject_GC_UnTrack(m); + if (__Pyx_CyFunction_weakreflist(m) != NULL) + PyObject_ClearWeakRefs((PyObject *) m); + __Pyx_CyFunction_clear(m); + PyObject_GC_Del(m); +} +static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg) +{ + Py_VISIT(m->func_closure); + Py_VISIT(m->func.m_module); + Py_VISIT(m->func_dict); + Py_VISIT(m->func_name); + Py_VISIT(m->func_qualname); + Py_VISIT(m->func_doc); + Py_VISIT(m->func_globals); + Py_VISIT(m->func_code); + Py_VISIT(m->func_classobj); + Py_VISIT(m->defaults_tuple); + Py_VISIT(m->defaults_kwdict); + if (m->defaults) { + PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); + int i; + for (i = 0; i < m->defaults_pyobjects; i++) + Py_VISIT(pydefaults[i]); + } + return 0; +} +static PyObject *__Pyx_CyFunction_descr_get(PyObject *func, PyObject *obj, PyObject *type) +{ + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + if (m->flags & __Pyx_CYFUNCTION_STATICMETHOD) { + Py_INCREF(func); + return func; + } + if (m->flags & __Pyx_CYFUNCTION_CLASSMETHOD) { + if (type == NULL) + type = (PyObject *)(Py_TYPE(obj)); + return __Pyx_PyMethod_New(func, type, (PyObject *)(Py_TYPE(type))); + } + if (obj == Py_None) + obj = NULL; + return __Pyx_PyMethod_New(func, obj, type); +} +static PyObject* +__Pyx_CyFunction_repr(__pyx_CyFunctionObject *op) +{ +#if PY_MAJOR_VERSION >= 3 + return PyUnicode_FromFormat("", + op->func_qualname, (void *)op); +#else + return PyString_FromFormat("", + PyString_AsString(op->func_qualname), (void *)op); +#endif +} +static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, PyObject *arg, PyObject *kw) { + PyCFunctionObject* f = (PyCFunctionObject*)func; + PyCFunction meth = f->m_ml->ml_meth; + Py_ssize_t size; + switch (f->m_ml->ml_flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) { + case METH_VARARGS: + if (likely(kw == NULL || PyDict_Size(kw) == 0)) + return (*meth)(self, arg); + break; + case METH_VARARGS | METH_KEYWORDS: + return (*(PyCFunctionWithKeywords)meth)(self, arg, kw); + case METH_NOARGS: + if (likely(kw == NULL || PyDict_Size(kw) == 0)) { + size = PyTuple_GET_SIZE(arg); + if (likely(size == 0)) + return (*meth)(self, NULL); + PyErr_Format(PyExc_TypeError, + "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", + f->m_ml->ml_name, size); + return NULL; + } + break; + case METH_O: + if (likely(kw == NULL || PyDict_Size(kw) == 0)) { + size = PyTuple_GET_SIZE(arg); + if (likely(size == 1)) { + PyObject *result, *arg0 = PySequence_ITEM(arg, 0); + if (unlikely(!arg0)) return NULL; + result = (*meth)(self, arg0); + Py_DECREF(arg0); + return result; + } + PyErr_Format(PyExc_TypeError, + "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", + f->m_ml->ml_name, size); + return NULL; + } + break; + default: + PyErr_SetString(PyExc_SystemError, "Bad call flags in " + "__Pyx_CyFunction_Call. METH_OLDARGS is no " + "longer supported!"); + return NULL; + } + PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments", + f->m_ml->ml_name); + return NULL; +} +static CYTHON_INLINE PyObject *__Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) { + return __Pyx_CyFunction_CallMethod(func, ((PyCFunctionObject*)func)->m_self, arg, kw); +} +static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, PyObject *kw) { + PyObject *result; + __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *) func; + if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { + Py_ssize_t argc; + PyObject *new_args; + PyObject *self; + argc = PyTuple_GET_SIZE(args); + new_args = PyTuple_GetSlice(args, 1, argc); + if (unlikely(!new_args)) + return NULL; + self = PyTuple_GetItem(args, 0); + if (unlikely(!self)) { + Py_DECREF(new_args); + return NULL; + } + result = __Pyx_CyFunction_CallMethod(func, self, new_args, kw); + Py_DECREF(new_args); + } else { + result = __Pyx_CyFunction_Call(func, args, kw); + } + return result; +} +static PyTypeObject __pyx_CyFunctionType_type = { + PyVarObject_HEAD_INIT(0, 0) + "cython_function_or_method", + sizeof(__pyx_CyFunctionObject), + 0, + (destructor) __Pyx_CyFunction_dealloc, + 0, + 0, + 0, +#if PY_MAJOR_VERSION < 3 + 0, +#else + 0, +#endif + (reprfunc) __Pyx_CyFunction_repr, + 0, + 0, + 0, + 0, + __Pyx_CyFunction_CallAsMethod, + 0, + 0, + 0, + 0, + Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC, + 0, + (traverseproc) __Pyx_CyFunction_traverse, + (inquiry) __Pyx_CyFunction_clear, + 0, +#if PY_VERSION_HEX < 0x030500A0 + offsetof(__pyx_CyFunctionObject, func_weakreflist), +#else + offsetof(PyCFunctionObject, m_weakreflist), +#endif + 0, + 0, + __pyx_CyFunction_methods, + __pyx_CyFunction_members, + __pyx_CyFunction_getsets, + 0, + 0, + __Pyx_CyFunction_descr_get, + 0, + offsetof(__pyx_CyFunctionObject, func_dict), + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, +#if PY_VERSION_HEX >= 0x030400a1 + 0, +#endif +}; +static int __pyx_CyFunction_init(void) { + __pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type); + if (__pyx_CyFunctionType == NULL) { + return -1; + } + return 0; +} +static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->defaults = PyObject_Malloc(size); + if (!m->defaults) + return PyErr_NoMemory(); + memset(m->defaults, 0, size); + m->defaults_pyobjects = pyobjects; + return m->defaults; +} +static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->defaults_tuple = tuple; + Py_INCREF(tuple); +} +static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->defaults_kwdict = dict; + Py_INCREF(dict); +} +static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) { + __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; + m->func_annotations = dict; + Py_INCREF(dict); +} + /* CLineInTraceback */ - static int __Pyx_CLineForTraceback(int c_line) { + static int __Pyx_CLineForTraceback(int c_line) { #ifdef CYTHON_CLINE_IN_TRACEBACK return ((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0; #else @@ -6769,7 +7873,7 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) } /* CodeObjectCache */ - static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; @@ -6849,7 +7953,7 @@ static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { } /* AddTraceback */ - #include "compile.h" + #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( @@ -6953,8 +8057,8 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif - /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { + /* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -6985,7 +8089,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { return ::std::complex< float >(x, y); @@ -7005,7 +8109,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -7140,7 +8244,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Declarations */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #ifdef __cplusplus static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { return ::std::complex< double >(x, y); @@ -7160,7 +8264,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* Arithmetic */ - #if CYTHON_CCOMPLEX + #if CYTHON_CCOMPLEX #else static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { return (a.real == b.real) && (a.imag == b.imag); @@ -7295,7 +8399,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { #endif /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -7326,7 +8430,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPyVerify */ - #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) @@ -7348,7 +8452,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -7379,7 +8483,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -7568,7 +8672,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { @@ -7599,7 +8703,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CIntFromPy */ - static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 @@ -7788,7 +8892,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* CheckBinaryVersion */ - static int __Pyx_check_binary_version(void) { + static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); @@ -7804,7 +8908,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* FunctionExport */ - static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig) { + static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig) { PyObject *d = 0; PyObject *cobj = 0; union { @@ -7841,7 +8945,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { } /* ModuleImport */ - #ifndef __PYX_HAVE_RT_ImportModule + #ifndef __PYX_HAVE_RT_ImportModule #define __PYX_HAVE_RT_ImportModule static PyObject *__Pyx_ImportModule(const char *name) { PyObject *py_name = 0; @@ -7859,7 +8963,7 @@ static PyObject *__Pyx_ImportModule(const char *name) { #endif /* TypeImport */ - #ifndef __PYX_HAVE_RT_ImportType + #ifndef __PYX_HAVE_RT_ImportType #define __PYX_HAVE_RT_ImportType static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict) @@ -7924,7 +9028,7 @@ static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class #endif /* InitStrings */ - static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { diff --git a/ccd/models/tmask.pxd b/ccd/models/tmask.pxd index 734c08f..631e465 100644 --- a/ccd/models/tmask.pxd +++ b/ccd/models/tmask.pxd @@ -17,7 +17,7 @@ cdef np.ndarray tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, -cdef np.ndarray tmask(np.ndarray[LTYPE_t, ndim=1] dates, +cpdef np.ndarray tmask(np.ndarray[LTYPE_t, ndim=1] dates, np.ndarray[STYPE_t, ndim=2] observations, np.ndarray[STYPE_t, ndim=1] variogram, list bands, From 1243df9069ee86233855e7891c4f4bde1a39e3dd Mon Sep 17 00:00:00 2001 From: clay austin Date: Tue, 29 Aug 2017 11:11:12 -0500 Subject: [PATCH 42/45] set dtype for observations to int16 instead of float, cpdef lasso coefficient_matrix for testing --- ccd/models/lasso.c | 382 ++++-- ccd/models/lasso.pxd | 5 +- ccd/models/robust_fit.c | 2317 +++++++++++++++++-------------------- ccd/models/robust_fit.pxd | 11 +- ccd/models/robust_fit.py | 52 +- ccd/models/tmask.c | 24 +- ccd/models/tmask.pxd | 3 +- ccd/procedures.c | 32 +- ccd/procedures.pxd | 11 +- test/test_ccd_detect.py | 14 +- 10 files changed, 1431 insertions(+), 1420 deletions(-) diff --git a/ccd/models/lasso.c b/ccd/models/lasso.c index b780c61..b6a398c 100644 --- a/ccd/models/lasso.c +++ b/ccd/models/lasso.c @@ -948,22 +948,31 @@ typedef npy_longdouble __pyx_t_5numpy_longdouble_t; * from cpython cimport bool * * ctypedef np.float64_t STYPE_t # <<<<<<<<<<<<<< + * ctypedef np.int16_t DTYPE_t * ctypedef float FTYPE_t - * ctypedef int ITYPE_t */ typedef __pyx_t_5numpy_float64_t __pyx_t_3ccd_6models_5lasso_STYPE_t; /* "ccd/models/lasso.pxd":7 * * ctypedef np.float64_t STYPE_t + * ctypedef np.int16_t DTYPE_t # <<<<<<<<<<<<<< + * ctypedef float FTYPE_t + * ctypedef int ITYPE_t + */ +typedef __pyx_t_5numpy_int16_t __pyx_t_3ccd_6models_5lasso_DTYPE_t; + +/* "ccd/models/lasso.pxd":8 + * ctypedef np.float64_t STYPE_t + * ctypedef np.int16_t DTYPE_t * ctypedef float FTYPE_t # <<<<<<<<<<<<<< * ctypedef int ITYPE_t * ctypedef bool BTYPE_t */ typedef float __pyx_t_3ccd_6models_5lasso_FTYPE_t; -/* "ccd/models/lasso.pxd":8 - * ctypedef np.float64_t STYPE_t +/* "ccd/models/lasso.pxd":9 + * ctypedef np.int16_t DTYPE_t * ctypedef float FTYPE_t * ctypedef int ITYPE_t # <<<<<<<<<<<<<< * ctypedef bool BTYPE_t @@ -971,7 +980,7 @@ typedef float __pyx_t_3ccd_6models_5lasso_FTYPE_t; */ typedef int __pyx_t_3ccd_6models_5lasso_ITYPE_t; -/* "ccd/models/lasso.pxd":10 +/* "ccd/models/lasso.pxd":11 * ctypedef int ITYPE_t * ctypedef bool BTYPE_t * ctypedef np.long_t LTYPE_t # <<<<<<<<<<<<<< @@ -1042,7 +1051,7 @@ typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; */ typedef npy_cdouble __pyx_t_5numpy_complex_t; -/* "ccd/models/lasso.pxd":9 +/* "ccd/models/lasso.pxd":10 * ctypedef float FTYPE_t * ctypedef int ITYPE_t * ctypedef bool BTYPE_t # <<<<<<<<<<<<<< @@ -1206,18 +1215,6 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject #define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) #endif -/* RaiseTooManyValuesToUnpack.proto */ -static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); - -/* RaiseNeedMoreValuesToUnpack.proto */ -static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); - -/* IterFinish.proto */ -static CYTHON_INLINE int __Pyx_IterFinish(void); - -/* UnpackItemEndCheck.proto */ -static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); - /* RaiseArgTupleInvalid.proto */ static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); @@ -1234,6 +1231,18 @@ static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, const char *name, int exact); +/* RaiseTooManyValuesToUnpack.proto */ +static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); + +/* RaiseNeedMoreValuesToUnpack.proto */ +static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); + +/* IterFinish.proto */ +static CYTHON_INLINE int __Pyx_IterFinish(void); + +/* UnpackItemEndCheck.proto */ +static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); + /* RaiseException.proto */ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); @@ -1634,11 +1643,11 @@ static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0; static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/ /* Module declarations from 'ccd.models.lasso' */ -static PyArrayObject *__pyx_f_3ccd_6models_5lasso_coefficient_matrix(PyArrayObject *, __pyx_t_3ccd_6models_5lasso_FTYPE_t, __pyx_t_3ccd_6models_5lasso_ITYPE_t); /*proto*/ +static PyArrayObject *__pyx_f_3ccd_6models_5lasso_coefficient_matrix(PyArrayObject *, __pyx_t_3ccd_6models_5lasso_FTYPE_t, __pyx_t_3ccd_6models_5lasso_ITYPE_t, int __pyx_skip_dispatch); /*proto*/ static PyObject *__pyx_f_3ccd_6models_5lasso_fitted_model(PyArrayObject *, PyArrayObject *, __pyx_t_3ccd_6models_5lasso_ITYPE_t, __pyx_t_3ccd_6models_5lasso_FTYPE_t, __pyx_t_3ccd_6models_5lasso_ITYPE_t, PyObject *, int __pyx_skip_dispatch); /*proto*/ static PyObject *__pyx_f_3ccd_6models_5lasso_predict(PyObject *, PyArrayObject *, __pyx_t_3ccd_6models_5lasso_FTYPE_t, int __pyx_skip_dispatch); /*proto*/ static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5lasso_LTYPE_t = { "LTYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_5lasso_LTYPE_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_3ccd_6models_5lasso_LTYPE_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_3ccd_6models_5lasso_LTYPE_t), 0 }; -static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5lasso_STYPE_t = { "STYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_5lasso_STYPE_t), { 0 }, 0, 'R', 0, 0 }; +static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5lasso_DTYPE_t = { "DTYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_5lasso_DTYPE_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_3ccd_6models_5lasso_DTYPE_t) ? 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static PyObject *__pyx_n_s_cos; static PyObject *__pyx_n_s_dates; static PyObject *__pyx_n_s_fit; @@ -1733,8 +1744,9 @@ static PyObject *__pyx_n_s_spectra_obs; static PyObject *__pyx_n_s_test; static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd; static PyObject *__pyx_n_s_zeros; -static PyObject *__pyx_pf_3ccd_6models_5lasso_fitted_model(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_dates, PyArrayObject *__pyx_v_spectra_obs, __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_max_iter, __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr, __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_num_coefficients, PyObject *__pyx_v_lm); /* proto */ -static PyObject *__pyx_pf_3ccd_6models_5lasso_2predict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_model, PyArrayObject *__pyx_v_dates, __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_5lasso_coefficient_matrix(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_dates, __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr, __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_num_coefficients); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_5lasso_2fitted_model(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_dates, PyArrayObject *__pyx_v_spectra_obs, __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_max_iter, __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr, __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_num_coefficients, PyObject *__pyx_v_lm); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_5lasso_4predict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_model, PyArrayObject *__pyx_v_dates, __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr); /* proto */ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ static PyObject *__pyx_int_0; @@ -1770,8 +1782,10 @@ static PyObject *__pyx_tuple__22; static PyObject *__pyx_tuple__23; static PyObject *__pyx_tuple__24; static PyObject *__pyx_tuple__26; +static PyObject *__pyx_tuple__28; static PyObject *__pyx_codeobj__25; static PyObject *__pyx_codeobj__27; +static PyObject *__pyx_codeobj__29; /* "ccd/models/lasso.py":7 * @@ -1781,7 +1795,8 @@ static PyObject *__pyx_codeobj__27; * Fourier transform function to be used for the matrix of inputs for */ -static PyArrayObject *__pyx_f_3ccd_6models_5lasso_coefficient_matrix(PyArrayObject *__pyx_v_dates, __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr, __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_num_coefficients) { +static PyObject *__pyx_pw_3ccd_6models_5lasso_1coefficient_matrix(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ +static PyArrayObject *__pyx_f_3ccd_6models_5lasso_coefficient_matrix(PyArrayObject *__pyx_v_dates, __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr, __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_num_coefficients, CYTHON_UNUSED int __pyx_skip_dispatch) { PyObject *__pyx_v_w = NULL; PyObject *__pyx_v_matrix = NULL; 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+ __Pyx_XGIVEREF(__pyx_r); + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + /* "ccd/models/lasso.py":43 * * @@ -2365,7 +2502,7 @@ static PyArrayObject *__pyx_f_3ccd_6models_5lasso_coefficient_matrix(PyArrayObje * """Create a fully fitted lasso model. */ -static PyObject *__pyx_pw_3ccd_6models_5lasso_1fitted_model(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ +static PyObject *__pyx_pw_3ccd_6models_5lasso_3fitted_model(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ static PyObject *__pyx_f_3ccd_6models_5lasso_fitted_model(PyArrayObject *__pyx_v_dates, PyArrayObject *__pyx_v_spectra_obs, CYTHON_UNUSED __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_max_iter, __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr, __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_num_coefficients, PyObject *__pyx_v_lm, CYTHON_UNUSED int __pyx_skip_dispatch) { PyArrayObject *__pyx_v_coef_matrix = NULL; PyObject *__pyx_v_model = NULL; @@ -2400,7 +2537,7 @@ static PyObject *__pyx_f_3ccd_6models_5lasso_fitted_model(PyArrayObject *__pyx_v __pyx_pybuffernd_dates.diminfo[0].strides = __pyx_pybuffernd_dates.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_dates.diminfo[0].shape = __pyx_pybuffernd_dates.rcbuffer->pybuffer.shape[0]; { __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_spectra_obs.rcbuffer->pybuffer, (PyObject*)__pyx_v_spectra_obs, &__Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5lasso_STYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 1, 0, __pyx_stack) == -1)) __PYX_ERR(0, 43, __pyx_L1_error) + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_spectra_obs.rcbuffer->pybuffer, (PyObject*)__pyx_v_spectra_obs, &__Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5lasso_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 1, 0, __pyx_stack) == -1)) __PYX_ERR(0, 43, __pyx_L1_error) } __pyx_pybuffernd_spectra_obs.diminfo[0].strides = __pyx_pybuffernd_spectra_obs.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_spectra_obs.diminfo[0].shape = __pyx_pybuffernd_spectra_obs.rcbuffer->pybuffer.shape[0]; @@ -2411,7 +2548,7 @@ static PyObject *__pyx_f_3ccd_6models_5lasso_fitted_model(PyArrayObject *__pyx_v * model = lm.fit(coef_matrix, spectra_obs) * */ - __pyx_t_1 = ((PyObject *)__pyx_f_3ccd_6models_5lasso_coefficient_matrix(((PyArrayObject *)__pyx_v_dates), __pyx_v_avg_days_yr, __pyx_v_num_coefficients)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 61, __pyx_L1_error) + __pyx_t_1 = ((PyObject *)__pyx_f_3ccd_6models_5lasso_coefficient_matrix(((PyArrayObject *)__pyx_v_dates), __pyx_v_avg_days_yr, __pyx_v_num_coefficients, 0)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 61, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); __pyx_v_coef_matrix = ((PyArrayObject *)__pyx_t_1); __pyx_t_1 = 0; @@ -2699,10 +2836,10 @@ static PyObject *__pyx_f_3ccd_6models_5lasso_fitted_model(PyArrayObject *__pyx_v } /* Python wrapper */ -static PyObject *__pyx_pw_3ccd_6models_5lasso_1fitted_model(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ -static char __pyx_doc_3ccd_6models_5lasso_fitted_model[] = "Create a fully fitted lasso model.\n\n Args:\n dates: list or ordinal observation dates\n spectra_obs: list of values corresponding to the observation dates for\n a single spectral band\n num_coefficients: how many coefficients to use for the fit\n max_iter: maximum number of iterations that the coefficients\n undergo to find the convergence point.\n\n Returns:\n sklearn.linear_model.Lasso().fit(observation_dates, observations)\n\n Example:\n fitted_model(dates, obs).predict(...)\n "; -static PyMethodDef __pyx_mdef_3ccd_6models_5lasso_1fitted_model = {"fitted_model", (PyCFunction)__pyx_pw_3ccd_6models_5lasso_1fitted_model, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3ccd_6models_5lasso_fitted_model}; -static PyObject *__pyx_pw_3ccd_6models_5lasso_1fitted_model(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { +static PyObject *__pyx_pw_3ccd_6models_5lasso_3fitted_model(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ +static char __pyx_doc_3ccd_6models_5lasso_2fitted_model[] = "Create a fully fitted lasso model.\n\n Args:\n dates: list or ordinal observation dates\n spectra_obs: list of values corresponding to the observation dates for\n a single spectral band\n num_coefficients: how many coefficients to use for the fit\n max_iter: maximum number of iterations that the coefficients\n undergo to find the convergence point.\n\n Returns:\n sklearn.linear_model.Lasso().fit(observation_dates, observations)\n\n Example:\n fitted_model(dates, obs).predict(...)\n "; +static PyMethodDef __pyx_mdef_3ccd_6models_5lasso_3fitted_model = {"fitted_model", (PyCFunction)__pyx_pw_3ccd_6models_5lasso_3fitted_model, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3ccd_6models_5lasso_2fitted_model}; +static PyObject *__pyx_pw_3ccd_6models_5lasso_3fitted_model(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { PyArrayObject *__pyx_v_dates = 0; PyArrayObject *__pyx_v_spectra_obs = 0; __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_max_iter; @@ -2800,7 +2937,7 @@ static PyObject *__pyx_pw_3ccd_6models_5lasso_1fitted_model(PyObject *__pyx_self __pyx_L4_argument_unpacking_done:; if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_dates), __pyx_ptype_5numpy_ndarray, 1, "dates", 0))) __PYX_ERR(0, 43, __pyx_L1_error) if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_spectra_obs), __pyx_ptype_5numpy_ndarray, 1, "spectra_obs", 0))) __PYX_ERR(0, 43, __pyx_L1_error) - __pyx_r = __pyx_pf_3ccd_6models_5lasso_fitted_model(__pyx_self, __pyx_v_dates, __pyx_v_spectra_obs, __pyx_v_max_iter, __pyx_v_avg_days_yr, __pyx_v_num_coefficients, __pyx_v_lm); + __pyx_r = __pyx_pf_3ccd_6models_5lasso_2fitted_model(__pyx_self, __pyx_v_dates, __pyx_v_spectra_obs, __pyx_v_max_iter, __pyx_v_avg_days_yr, __pyx_v_num_coefficients, __pyx_v_lm); /* function exit code */ goto __pyx_L0; @@ -2811,7 +2948,7 @@ static PyObject *__pyx_pw_3ccd_6models_5lasso_1fitted_model(PyObject *__pyx_self return __pyx_r; } -static PyObject *__pyx_pf_3ccd_6models_5lasso_fitted_model(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_dates, PyArrayObject *__pyx_v_spectra_obs, __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_max_iter, __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr, __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_num_coefficients, PyObject *__pyx_v_lm) { +static PyObject *__pyx_pf_3ccd_6models_5lasso_2fitted_model(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_dates, PyArrayObject *__pyx_v_spectra_obs, __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_max_iter, __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr, __pyx_t_3ccd_6models_5lasso_ITYPE_t __pyx_v_num_coefficients, PyObject *__pyx_v_lm) { __Pyx_LocalBuf_ND __pyx_pybuffernd_dates; __Pyx_Buffer __pyx_pybuffer_dates; __Pyx_LocalBuf_ND __pyx_pybuffernd_spectra_obs; @@ -2835,7 +2972,7 @@ static PyObject *__pyx_pf_3ccd_6models_5lasso_fitted_model(CYTHON_UNUSED PyObjec __pyx_pybuffernd_dates.diminfo[0].strides = __pyx_pybuffernd_dates.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_dates.diminfo[0].shape = __pyx_pybuffernd_dates.rcbuffer->pybuffer.shape[0]; { __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_spectra_obs.rcbuffer->pybuffer, (PyObject*)__pyx_v_spectra_obs, &__Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5lasso_STYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 1, 0, __pyx_stack) == -1)) __PYX_ERR(0, 43, __pyx_L1_error) + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_spectra_obs.rcbuffer->pybuffer, (PyObject*)__pyx_v_spectra_obs, &__Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5lasso_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 1, 0, __pyx_stack) == -1)) __PYX_ERR(0, 43, __pyx_L1_error) } __pyx_pybuffernd_spectra_obs.diminfo[0].strides = __pyx_pybuffernd_spectra_obs.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_spectra_obs.diminfo[0].shape = __pyx_pybuffernd_spectra_obs.rcbuffer->pybuffer.shape[0]; __Pyx_XDECREF(__pyx_r); @@ -2875,7 +3012,7 @@ static PyObject *__pyx_pf_3ccd_6models_5lasso_fitted_model(CYTHON_UNUSED PyObjec * */ -static PyObject *__pyx_pw_3ccd_6models_5lasso_3predict(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ +static PyObject *__pyx_pw_3ccd_6models_5lasso_5predict(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ static PyObject *__pyx_f_3ccd_6models_5lasso_predict(PyObject *__pyx_v_model, PyArrayObject *__pyx_v_dates, __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr, CYTHON_UNUSED int __pyx_skip_dispatch) { PyArrayObject *__pyx_v_coef_matrix = NULL; __Pyx_LocalBuf_ND __pyx_pybuffernd_dates; @@ -2904,7 +3041,7 @@ static PyObject *__pyx_f_3ccd_6models_5lasso_predict(PyObject *__pyx_v_model, Py * * return model.fitted_model.predict(coef_matrix) */ - __pyx_t_1 = ((PyObject *)__pyx_f_3ccd_6models_5lasso_coefficient_matrix(((PyArrayObject *)__pyx_v_dates), __pyx_v_avg_days_yr, 8)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 71, __pyx_L1_error) + __pyx_t_1 = ((PyObject *)__pyx_f_3ccd_6models_5lasso_coefficient_matrix(((PyArrayObject *)__pyx_v_dates), __pyx_v_avg_days_yr, 8, 0)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 71, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); __pyx_v_coef_matrix = ((PyArrayObject *)__pyx_t_1); __pyx_t_1 = 0; @@ -3000,9 +3137,9 @@ static PyObject *__pyx_f_3ccd_6models_5lasso_predict(PyObject *__pyx_v_model, Py } /* Python wrapper */ -static PyObject *__pyx_pw_3ccd_6models_5lasso_3predict(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ -static PyMethodDef __pyx_mdef_3ccd_6models_5lasso_3predict = {"predict", (PyCFunction)__pyx_pw_3ccd_6models_5lasso_3predict, METH_VARARGS|METH_KEYWORDS, 0}; -static PyObject *__pyx_pw_3ccd_6models_5lasso_3predict(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { +static PyObject *__pyx_pw_3ccd_6models_5lasso_5predict(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ +static PyMethodDef __pyx_mdef_3ccd_6models_5lasso_5predict = {"predict", (PyCFunction)__pyx_pw_3ccd_6models_5lasso_5predict, METH_VARARGS|METH_KEYWORDS, 0}; +static PyObject *__pyx_pw_3ccd_6models_5lasso_5predict(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { PyObject *__pyx_v_model = 0; PyArrayObject *__pyx_v_dates = 0; __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr; @@ -3066,7 +3203,7 @@ static PyObject *__pyx_pw_3ccd_6models_5lasso_3predict(PyObject *__pyx_self, PyO return NULL; __pyx_L4_argument_unpacking_done:; if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_dates), __pyx_ptype_5numpy_ndarray, 1, "dates", 0))) __PYX_ERR(0, 70, __pyx_L1_error) - __pyx_r = __pyx_pf_3ccd_6models_5lasso_2predict(__pyx_self, __pyx_v_model, __pyx_v_dates, __pyx_v_avg_days_yr); + __pyx_r = __pyx_pf_3ccd_6models_5lasso_4predict(__pyx_self, __pyx_v_model, __pyx_v_dates, __pyx_v_avg_days_yr); /* function exit code */ goto __pyx_L0; @@ -3077,7 +3214,7 @@ static PyObject *__pyx_pw_3ccd_6models_5lasso_3predict(PyObject *__pyx_self, PyO return __pyx_r; } -static PyObject *__pyx_pf_3ccd_6models_5lasso_2predict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_model, PyArrayObject *__pyx_v_dates, __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr) { +static PyObject *__pyx_pf_3ccd_6models_5lasso_4predict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_model, PyArrayObject *__pyx_v_dates, __pyx_t_3ccd_6models_5lasso_FTYPE_t __pyx_v_avg_days_yr) { __Pyx_LocalBuf_ND __pyx_pybuffernd_dates; __Pyx_Buffer __pyx_pybuffer_dates; PyObject *__pyx_r = NULL; @@ -5672,6 +5809,7 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_ccd_models_lasso, __pyx_k_ccd_models_lasso, sizeof(__pyx_k_ccd_models_lasso), 0, 0, 1, 1}, {&__pyx_kp_s_ccd_models_lasso_py, __pyx_k_ccd_models_lasso_py, sizeof(__pyx_k_ccd_models_lasso_py), 0, 0, 1, 0}, {&__pyx_n_s_cline_in_traceback, __pyx_k_cline_in_traceback, sizeof(__pyx_k_cline_in_traceback), 0, 0, 1, 1}, + {&__pyx_n_s_coefficient_matrix, __pyx_k_coefficient_matrix, sizeof(__pyx_k_coefficient_matrix), 0, 0, 1, 1}, {&__pyx_n_s_cos, __pyx_k_cos, sizeof(__pyx_k_cos), 0, 0, 1, 1}, {&__pyx_n_s_dates, __pyx_k_dates, sizeof(__pyx_k_dates), 0, 0, 1, 1}, {&__pyx_n_s_fit, __pyx_k_fit, sizeof(__pyx_k_fit), 0, 0, 1, 1}, @@ -5911,6 +6049,18 @@ static int __Pyx_InitCachedConstants(void) { __Pyx_GOTREF(__pyx_tuple__23); __Pyx_GIVEREF(__pyx_tuple__23); + /* "ccd/models/lasso.py":7 + * + * + * def coefficient_matrix(dates, avg_days_yr, num_coefficients): # <<<<<<<<<<<<<< + * """ + * Fourier transform function to be used for the matrix of inputs for + */ + __pyx_tuple__24 = PyTuple_Pack(3, __pyx_n_s_dates, __pyx_n_s_avg_days_yr, __pyx_n_s_num_coefficients); if (unlikely(!__pyx_tuple__24)) __PYX_ERR(0, 7, __pyx_L1_error) + __Pyx_GOTREF(__pyx_tuple__24); + __Pyx_GIVEREF(__pyx_tuple__24); + __pyx_codeobj__25 = (PyObject*)__Pyx_PyCode_New(3, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__24, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_ccd_models_lasso_py, __pyx_n_s_coefficient_matrix, 7, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__25)) __PYX_ERR(0, 7, __pyx_L1_error) + /* "ccd/models/lasso.py":43 * * @@ -5918,10 +6068,10 @@ static int __Pyx_InitCachedConstants(void) { * * """Create a fully fitted lasso model. */ - __pyx_tuple__24 = PyTuple_Pack(6, __pyx_n_s_dates, __pyx_n_s_spectra_obs, __pyx_n_s_max_iter, __pyx_n_s_avg_days_yr, __pyx_n_s_num_coefficients, __pyx_n_s_lm); 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__pyx_t_2 = 0; __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + /* "ccd/models/lasso.py":7 + * + * + * def coefficient_matrix(dates, avg_days_yr, num_coefficients): # <<<<<<<<<<<<<< + * """ + * Fourier transform function to be used for the matrix of inputs for + */ + __pyx_t_1 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ccd_6models_5lasso_1coefficient_matrix, 0, __pyx_n_s_coefficient_matrix, NULL, __pyx_n_s_ccd_models_lasso, __pyx_d, ((PyObject *)__pyx_codeobj__25)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 7, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_coefficient_matrix, __pyx_t_1) < 0) __PYX_ERR(0, 7, __pyx_L1_error) + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + /* "ccd/models/lasso.py":43 * * @@ -6126,7 +6288,7 @@ PyMODINIT_FUNC PyInit_lasso(void) * * """Create a fully fitted lasso model. */ - __pyx_t_1 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ccd_6models_5lasso_1fitted_model, 0, __pyx_n_s_fitted_model, NULL, __pyx_n_s_ccd_models_lasso, __pyx_d, ((PyObject *)__pyx_codeobj__25)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 43, __pyx_L1_error) + __pyx_t_1 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ccd_6models_5lasso_3fitted_model, 0, __pyx_n_s_fitted_model, NULL, __pyx_n_s_ccd_models_lasso, __pyx_d, ((PyObject *)__pyx_codeobj__27)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 43, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); if (PyDict_SetItem(__pyx_d, __pyx_n_s_fitted_model, __pyx_t_1) < 0) __PYX_ERR(0, 43, __pyx_L1_error) __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; @@ -6138,7 +6300,7 @@ PyMODINIT_FUNC PyInit_lasso(void) * coef_matrix = coefficient_matrix(dates, avg_days_yr, 8) * */ - __pyx_t_1 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ccd_6models_5lasso_3predict, 0, __pyx_n_s_predict, NULL, __pyx_n_s_ccd_models_lasso, __pyx_d, ((PyObject *)__pyx_codeobj__27)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 70, __pyx_L1_error) + __pyx_t_1 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ccd_6models_5lasso_5predict, 0, __pyx_n_s_predict, NULL, __pyx_n_s_ccd_models_lasso, __pyx_d, ((PyObject *)__pyx_codeobj__29)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 70, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); if (PyDict_SetItem(__pyx_d, __pyx_n_s_predict, __pyx_t_1) < 0) __PYX_ERR(0, 70, __pyx_L1_error) __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; @@ -7044,66 +7206,6 @@ static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject } #endif -/* RaiseTooManyValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { - PyErr_Format(PyExc_ValueError, - "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); -} - -/* RaiseNeedMoreValuesToUnpack */ - static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { - PyErr_Format(PyExc_ValueError, - "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", - index, (index == 1) ? "" : "s"); -} - -/* IterFinish */ - static CYTHON_INLINE int __Pyx_IterFinish(void) { -#if CYTHON_FAST_THREAD_STATE - PyThreadState *tstate = PyThreadState_GET(); - PyObject* exc_type = tstate->curexc_type; - if (unlikely(exc_type)) { - if (likely(exc_type == PyExc_StopIteration) || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)) { - PyObject *exc_value, *exc_tb; - exc_value = tstate->curexc_value; - exc_tb = tstate->curexc_traceback; - tstate->curexc_type = 0; - tstate->curexc_value = 0; - tstate->curexc_traceback = 0; - Py_DECREF(exc_type); - Py_XDECREF(exc_value); - Py_XDECREF(exc_tb); - return 0; - } else { - return -1; - } - } - return 0; -#else - if (unlikely(PyErr_Occurred())) { - if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) { - PyErr_Clear(); - return 0; - } else { - return -1; - } - } - return 0; -#endif -} - -/* UnpackItemEndCheck */ - static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { - if (unlikely(retval)) { - Py_DECREF(retval); - __Pyx_RaiseTooManyValuesError(expected); - return -1; - } else { - return __Pyx_IterFinish(); - } - return 0; -} - /* RaiseArgTupleInvalid */ static void __Pyx_RaiseArgtupleInvalid( const char* func_name, @@ -7273,6 +7375,66 @@ static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, in return 0; } +/* RaiseTooManyValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { + PyErr_Format(PyExc_ValueError, + "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); +} + +/* RaiseNeedMoreValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { + PyErr_Format(PyExc_ValueError, + "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", + index, (index == 1) ? "" : "s"); +} + +/* IterFinish */ + static CYTHON_INLINE int __Pyx_IterFinish(void) { +#if CYTHON_FAST_THREAD_STATE + PyThreadState *tstate = PyThreadState_GET(); + PyObject* exc_type = tstate->curexc_type; + if (unlikely(exc_type)) { + if (likely(exc_type == PyExc_StopIteration) || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)) { + PyObject *exc_value, *exc_tb; + exc_value = tstate->curexc_value; + exc_tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; + Py_DECREF(exc_type); + Py_XDECREF(exc_value); + Py_XDECREF(exc_tb); + return 0; + } else { + return -1; + } + } + return 0; +#else + if (unlikely(PyErr_Occurred())) { + if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) { + PyErr_Clear(); + return 0; + } else { + return -1; + } + } + return 0; +#endif +} + +/* UnpackItemEndCheck */ + static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { + if (unlikely(retval)) { + Py_DECREF(retval); + __Pyx_RaiseTooManyValuesError(expected); + return -1; + } else { + return __Pyx_IterFinish(); + } + return 0; +} + /* RaiseException */ #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, diff --git a/ccd/models/lasso.pxd b/ccd/models/lasso.pxd index 2e2edc7..99b2625 100644 --- a/ccd/models/lasso.pxd +++ b/ccd/models/lasso.pxd @@ -4,18 +4,19 @@ cimport numpy as np from cpython cimport bool ctypedef np.float64_t STYPE_t +ctypedef np.int16_t DTYPE_t ctypedef float FTYPE_t ctypedef int ITYPE_t ctypedef bool BTYPE_t ctypedef np.long_t LTYPE_t -cdef np.ndarray coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, +cpdef np.ndarray coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, FTYPE_t avg_days_yr, ITYPE_t num_coefficients) cpdef object fitted_model(np.ndarray[LTYPE_t, ndim=1] dates, - np.ndarray[STYPE_t, ndim=1] spectra_obs, + np.ndarray[DTYPE_t, ndim=1] spectra_obs, ITYPE_t max_iter, FTYPE_t avg_days_yr, ITYPE_t num_coefficients, diff --git a/ccd/models/robust_fit.c b/ccd/models/robust_fit.c index 9727f78..896ec4f 100644 --- a/ccd/models/robust_fit.c +++ b/ccd/models/robust_fit.c @@ -950,22 +950,31 @@ typedef npy_longdouble __pyx_t_5numpy_longdouble_t; * from cpython cimport bool * * ctypedef np.float64_t STYPE_t # <<<<<<<<<<<<<< + * ctypedef np.int16_t DTYPE_t * ctypedef float FTYPE_t - * ctypedef int ITYPE_t */ typedef __pyx_t_5numpy_float64_t __pyx_t_3ccd_6models_10robust_fit_STYPE_t; /* "ccd/models/robust_fit.pxd":7 * * ctypedef np.float64_t STYPE_t + * ctypedef np.int16_t DTYPE_t # <<<<<<<<<<<<<< + * ctypedef float FTYPE_t + * ctypedef int ITYPE_t + */ +typedef __pyx_t_5numpy_int16_t __pyx_t_3ccd_6models_10robust_fit_DTYPE_t; + +/* "ccd/models/robust_fit.pxd":8 + * ctypedef np.float64_t STYPE_t + * ctypedef np.int16_t DTYPE_t * ctypedef float FTYPE_t # <<<<<<<<<<<<<< * ctypedef int ITYPE_t * ctypedef bool BTYPE_t */ typedef float __pyx_t_3ccd_6models_10robust_fit_FTYPE_t; -/* "ccd/models/robust_fit.pxd":8 - * ctypedef np.float64_t STYPE_t +/* "ccd/models/robust_fit.pxd":9 + * ctypedef np.int16_t DTYPE_t * ctypedef float FTYPE_t * ctypedef int ITYPE_t # <<<<<<<<<<<<<< * ctypedef bool BTYPE_t @@ -973,7 +982,7 @@ typedef float __pyx_t_3ccd_6models_10robust_fit_FTYPE_t; */ typedef int __pyx_t_3ccd_6models_10robust_fit_ITYPE_t; -/* "ccd/models/robust_fit.pxd":10 +/* "ccd/models/robust_fit.pxd":11 * ctypedef int ITYPE_t * ctypedef bool BTYPE_t * ctypedef np.long_t LTYPE_t # <<<<<<<<<<<<<< @@ -1048,7 +1057,7 @@ struct __pyx_opt_args_3ccd_6models_10robust_fit_bisquare; struct __pyx_opt_args_3ccd_6models_10robust_fit_mad; struct __pyx_opt_args_3ccd_6models_10robust_fit__check_converge; -/* "ccd/models/robust_fit.pxd":9 +/* "ccd/models/robust_fit.pxd":10 * ctypedef float FTYPE_t * ctypedef int ITYPE_t * ctypedef bool BTYPE_t # <<<<<<<<<<<<<< @@ -1057,7 +1066,7 @@ struct __pyx_opt_args_3ccd_6models_10robust_fit__check_converge; */ typedef PyBoolObject *__pyx_t_3ccd_6models_10robust_fit_BTYPE_t; -/* "ccd/models/robust_fit.pxd":13 +/* "ccd/models/robust_fit.pxd":14 * * * cpdef np.ndarray[STYPE_t, ndim=1] bisquare(np.ndarray[STYPE_t, ndim=1] resid, # <<<<<<<<<<<<<< @@ -1069,7 +1078,7 @@ struct __pyx_opt_args_3ccd_6models_10robust_fit_bisquare { __pyx_t_3ccd_6models_10robust_fit_FTYPE_t c; }; -/* "ccd/models/robust_fit.pxd":16 +/* "ccd/models/robust_fit.pxd":17 * FTYPE_t c=*) * * cpdef STYPE_t mad(np.ndarray[STYPE_t, ndim=1] x, # <<<<<<<<<<<<<< @@ -1081,7 +1090,7 @@ struct __pyx_opt_args_3ccd_6models_10robust_fit_mad { __pyx_t_3ccd_6models_10robust_fit_STYPE_t c; }; -/* "ccd/models/robust_fit.pxd":19 +/* "ccd/models/robust_fit.pxd":20 * STYPE_t c=*) * * cpdef bool _check_converge(np.ndarray[STYPE_t, ndim=1] x0, # <<<<<<<<<<<<<< @@ -1093,7 +1102,7 @@ struct __pyx_opt_args_3ccd_6models_10robust_fit__check_converge { __pyx_t_3ccd_6models_10robust_fit_STYPE_t tol; }; -/* "ccd/models/robust_fit.pxd":33 +/* "ccd/models/robust_fit.pxd":30 * * * cdef class RLM: # <<<<<<<<<<<<<< @@ -1116,7 +1125,7 @@ struct __pyx_obj_3ccd_6models_10robust_fit_RLM { -/* "ccd/models/robust_fit.py":111 +/* "ccd/models/robust_fit.py":97 * * # Robust regression * class RLM(object): # <<<<<<<<<<<<<< @@ -1522,28 +1531,6 @@ static void __Pyx_WriteUnraisable(const char *name, int clineno, int lineno, const char *filename, int full_traceback, int nogil); 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(PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\ - __Pyx_GetItemInt_Generic(o, to_py_func(i)))) -#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ - __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ - (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck); -#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ - __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ - (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck); -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, - int is_list, int wraparound, int boundscheck); - /* RaiseTooManyValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); @@ -1571,6 +1558,28 @@ static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, long intval, (inplace ? PyNumber_InPlaceAdd(op1, op2) : PyNumber_Add(op1, op2)) #endif +/* GetItemInt.proto */ +#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\ + (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\ + __Pyx_GetItemInt_Generic(o, to_py_func(i)))) +#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ + (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, + int wraparound, int boundscheck); +#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ + (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, + int wraparound, int boundscheck); +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, + int is_list, int wraparound, int boundscheck); + /* GetAttr.proto */ static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *, PyObject *); @@ -1756,10 +1765,10 @@ static Py_ssize_t __Pyx_zeros[] = {0, 0, 0, 0, 0, 0, 0, 0}; static Py_ssize_t __Pyx_minusones[] = {-1, -1, -1, -1, -1, -1, -1, -1}; /* CIntToPy.proto */ -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value); /* CIntToPy.proto */ -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value); +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); /* RealImag.proto */ #if CYTHON_CCOMPLEX @@ -1995,10 +2004,10 @@ static PyTypeObject *__pyx_ptype_3ccd_6models_10robust_fit_RLM = 0; static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit_bisquare(PyArrayObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_3ccd_6models_10robust_fit_bisquare *__pyx_optional_args); /*proto*/ static __pyx_t_3ccd_6models_10robust_fit_STYPE_t __pyx_f_3ccd_6models_10robust_fit_mad(PyArrayObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_3ccd_6models_10robust_fit_mad *__pyx_optional_args); /*proto*/ static PyBoolObject *__pyx_f_3ccd_6models_10robust_fit__check_converge(PyArrayObject *, PyArrayObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_3ccd_6models_10robust_fit__check_converge *__pyx_optional_args); /*proto*/ -static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit__weight_beta(PyArrayObject *, PyArrayObject *, PyArrayObject *, int __pyx_skip_dispatch); /*proto*/ -static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit__weight_resid(PyArrayObject *, PyArrayObject *, PyArrayObject *, int __pyx_skip_dispatch); /*proto*/ +static PyObject *__pyx_f_3ccd_6models_10robust_fit__weight_fit(PyArrayObject *, PyArrayObject *, PyArrayObject *, int __pyx_skip_dispatch); /*proto*/ static PyObject *__pyx_f_3ccd_6models_10robust_fit___pyx_unpickle_RLM__set_state(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *, PyObject *); /*proto*/ static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_10robust_fit_STYPE_t = { "STYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_10robust_fit_STYPE_t), { 0 }, 0, 'R', 0, 0 }; +static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_10robust_fit_DTYPE_t = { "DTYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_10robust_fit_DTYPE_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_3ccd_6models_10robust_fit_DTYPE_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_3ccd_6models_10robust_fit_DTYPE_t), 0 }; #define __Pyx_MODULE_NAME "ccd.models.robust_fit" int __pyx_module_is_main_ccd__models__robust_fit = 0; @@ -2027,7 +2036,6 @@ static const char __pyx_k_std[] = "std"; static const char __pyx_k_sum[] = "sum"; static const char __pyx_k_tol[] = "tol"; static const char __pyx_k_axis[] = "axis"; -static const char __pyx_k_beta[] = "beta"; static const char __pyx_k_copy[] = "copy"; static const char __pyx_k_dict[] = "__dict__"; static const char __pyx_k_fabs[] = "fabs"; @@ -2038,6 +2046,7 @@ static const char __pyx_k_sort[] = "sort"; static const char __pyx_k_sqrt[] = "sqrt"; static const char __pyx_k_test[] = "__test__"; static const char __pyx_k_tune[] = "tune"; +static const char __pyx_k_dtype[] = "dtype"; static const char __pyx_k_finfo[] = "finfo"; static const char __pyx_k_float[] = "float"; static const char __pyx_k_lstsq[] = "lstsq"; @@ -2058,23 +2067,21 @@ static const char __pyx_k_RLM_fit[] = "RLM.fit"; static const char __pyx_k_maxiter[] = "maxiter"; static const char __pyx_k_minimum[] = "minimum"; static const char __pyx_k_predict[] = "predict"; -static const char __pyx_k_sklearn[] = "sklearn"; static const char __pyx_k_bisquare[] = "bisquare"; static const char __pyx_k_pyx_type[] = "__pyx_type"; static const char __pyx_k_ones_like[] = "ones_like"; static const char __pyx_k_pyx_state[] = "__pyx_state"; static const char __pyx_k_ValueError[] = "ValueError"; static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__"; +static const char __pyx_k_weight_fit[] = "_weight_fit"; static const char __pyx_k_ImportError[] = "ImportError"; static const char __pyx_k_PickleError[] = "PickleError"; static const char __pyx_k_RLM_predict[] = "RLM.predict"; -static const char __pyx_k_weight_beta[] = "_weight_beta"; static const char __pyx_k_RuntimeError[] = "RuntimeError"; static const char __pyx_k_pyx_checksum[] = "__pyx_checksum"; static const char __pyx_k_stringsource[] = "stringsource"; static const char __pyx_k_update_scale[] = "update_scale"; static const char __pyx_k_use_setstate[] = "use_setstate"; -static const char __pyx_k_weight_resid[] = "_weight_resid"; static const char __pyx_k_reduce_cython[] = "__reduce_cython__"; static const char __pyx_k_check_converge[] = "_check_converge"; static const char __pyx_k_scale_constant[] = "scale_constant"; @@ -2112,7 +2119,6 @@ static PyObject *__pyx_n_s_X; static PyObject *__pyx_n_s_abs; static PyObject *__pyx_n_s_any; static PyObject *__pyx_n_s_axis; -static PyObject *__pyx_n_s_beta; static PyObject *__pyx_n_s_bisquare; static PyObject *__pyx_n_s_c; static PyObject *__pyx_n_s_ccd_models_robust_fit; @@ -2124,6 +2130,7 @@ static PyObject *__pyx_n_s_dict; static PyObject *__pyx_n_s_dict_2; static PyObject *__pyx_n_s_divide; static PyObject *__pyx_n_s_dot; +static PyObject *__pyx_n_s_dtype; static PyObject *__pyx_n_s_eps; static PyObject *__pyx_n_s_fabs; static PyObject *__pyx_n_s_finfo; @@ -2162,7 +2169,6 @@ static PyObject *__pyx_n_s_scale_constant; static PyObject *__pyx_n_s_scipy; static PyObject *__pyx_n_s_self; static PyObject *__pyx_n_s_setstate_cython; -static PyObject *__pyx_n_s_sklearn; static PyObject *__pyx_n_s_sort; static PyObject *__pyx_n_s_sqrt; static PyObject *__pyx_n_s_state; @@ -2177,16 +2183,14 @@ static PyObject *__pyx_n_s_update; static PyObject *__pyx_n_s_update_scale; static PyObject *__pyx_n_s_use_setstate; static PyObject *__pyx_n_s_w; -static PyObject *__pyx_n_s_weight_beta; -static PyObject *__pyx_n_s_weight_resid; +static PyObject *__pyx_n_s_weight_fit; static PyObject *__pyx_n_s_x; static PyObject *__pyx_n_s_x0; static PyObject *__pyx_n_s_y; static PyObject *__pyx_pf_3ccd_6models_10robust_fit_bisquare(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_resid, __pyx_t_3ccd_6models_10robust_fit_FTYPE_t __pyx_v_c); /* proto */ static PyObject *__pyx_pf_3ccd_6models_10robust_fit_2mad(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_x, __pyx_t_3ccd_6models_10robust_fit_STYPE_t __pyx_v_c); /* proto */ static PyObject *__pyx_pf_3ccd_6models_10robust_fit_4_check_converge(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_x0, PyArrayObject *__pyx_v_x, __pyx_t_3ccd_6models_10robust_fit_STYPE_t __pyx_v_tol); /* proto */ -static PyObject *__pyx_pf_3ccd_6models_10robust_fit_6_weight_beta(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_X, PyArrayObject *__pyx_v_y, PyArrayObject *__pyx_v_w); /* proto */ -static PyObject *__pyx_pf_3ccd_6models_10robust_fit_8_weight_resid(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_X, PyArrayObject *__pyx_v_y, PyArrayObject *__pyx_v_beta); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_10robust_fit_6_weight_fit(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_X, PyArrayObject *__pyx_v_y, PyArrayObject *__pyx_v_w); /* proto */ static int __pyx_pf_3ccd_6models_10robust_fit_3RLM___init__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyObject *__pyx_v_tune, PyObject *__pyx_v_scale_constant, PyObject *__pyx_v_update_scale, PyObject *__pyx_v_maxiter, PyObject *__pyx_v_tol); /* proto */ static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_2fit(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyArrayObject *__pyx_v_X, PyArrayObject *__pyx_v_y); /* proto */ static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_4predict(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyArrayObject *__pyx_v_X); /* proto */ @@ -2213,7 +2217,7 @@ static int __pyx_pf_3ccd_6models_10robust_fit_3RLM_7weights_2__set__(struct __py static int __pyx_pf_3ccd_6models_10robust_fit_3RLM_7weights_4__del__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_6__reduce_cython__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_3ccd_6models_10robust_fit_3RLM_8__setstate_cython__(struct __pyx_obj_3ccd_6models_10robust_fit_RLM *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ -static PyObject *__pyx_pf_3ccd_6models_10robust_fit_10__pyx_unpickle_RLM(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ +static PyObject *__pyx_pf_3ccd_6models_10robust_fit_8__pyx_unpickle_RLM(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ static PyObject *__pyx_tp_new_3ccd_6models_10robust_fit_RLM(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ @@ -2231,12 +2235,13 @@ static PyObject *__pyx_codeobj_; static PyObject *__pyx_slice__3; static PyObject *__pyx_slice__6; static PyObject *__pyx_tuple__7; +static PyObject *__pyx_slice__10; static PyObject *__pyx_slice__11; -static PyObject *__pyx_slice__12; +static PyObject *__pyx_slice__13; static PyObject *__pyx_slice__14; -static PyObject *__pyx_slice__15; -static PyObject *__pyx_tuple__13; -static PyObject *__pyx_tuple__16; +static PyObject *__pyx_tuple__12; +static PyObject *__pyx_tuple__15; +static PyObject *__pyx_tuple__19; static PyObject *__pyx_tuple__20; static PyObject *__pyx_tuple__21; static PyObject *__pyx_tuple__22; @@ -2255,17 +2260,14 @@ static PyObject *__pyx_tuple__34; static PyObject *__pyx_tuple__35; static PyObject *__pyx_tuple__36; static PyObject *__pyx_tuple__37; -static PyObject *__pyx_tuple__38; -static PyObject *__pyx_tuple__39; static PyObject *__pyx_codeobj__2; static PyObject *__pyx_codeobj__4; static PyObject *__pyx_codeobj__5; static PyObject *__pyx_codeobj__8; static PyObject *__pyx_codeobj__9; -static PyObject *__pyx_codeobj__10; +static PyObject *__pyx_codeobj__16; static PyObject *__pyx_codeobj__17; static PyObject *__pyx_codeobj__18; -static PyObject *__pyx_codeobj__19; /* "ccd/models/robust_fit.py":26 * @@ -3308,23 +3310,26 @@ static PyObject *__pyx_pf_3ccd_6models_10robust_fit_4_check_converge(CYTHON_UNUS /* "ccd/models/robust_fit.py":71 * * - * def _weight_beta(X, y, w): # <<<<<<<<<<<<<< + * def _weight_fit(X, y, w): # <<<<<<<<<<<<<< * """ * Apply a weighted OLS fit to data */ -static PyObject *__pyx_pw_3ccd_6models_10robust_fit_7_weight_beta(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ -static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit__weight_beta(PyArrayObject *__pyx_v_X, PyArrayObject *__pyx_v_y, PyArrayObject *__pyx_v_w, CYTHON_UNUSED int __pyx_skip_dispatch) { +static PyObject *__pyx_pw_3ccd_6models_10robust_fit_7_weight_fit(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ +static PyObject *__pyx_f_3ccd_6models_10robust_fit__weight_fit(PyArrayObject *__pyx_v_X, PyArrayObject *__pyx_v_y, PyArrayObject *__pyx_v_w, CYTHON_UNUSED int __pyx_skip_dispatch) { PyObject *__pyx_v_sw = NULL; PyObject *__pyx_v_Xw = NULL; PyObject *__pyx_v_yw = NULL; + PyObject *__pyx_v_beta = NULL; + CYTHON_UNUSED PyObject *__pyx_v__ = NULL; + PyObject *__pyx_v_resid = NULL; __Pyx_LocalBuf_ND __pyx_pybuffernd_X; __Pyx_Buffer __pyx_pybuffer_X; __Pyx_LocalBuf_ND __pyx_pybuffernd_w; __Pyx_Buffer __pyx_pybuffer_w; __Pyx_LocalBuf_ND __pyx_pybuffernd_y; __Pyx_Buffer __pyx_pybuffer_y; - PyArrayObject *__pyx_r = NULL; + PyObject *__pyx_r = NULL; __Pyx_TraceDeclarations __Pyx_RefNannyDeclarations PyObject *__pyx_t_1 = NULL; @@ -3332,9 +3337,12 @@ static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit__weight_beta(PyArrayObje PyObject *__pyx_t_3 = NULL; PyObject *__pyx_t_4 = NULL; int __pyx_t_5; + PyObject *__pyx_t_6 = NULL; + PyObject *__pyx_t_7 = NULL; + PyObject *(*__pyx_t_8)(PyObject *); __Pyx_TraceFrameInit(__pyx_codeobj__5) - __Pyx_RefNannySetupContext("_weight_beta", 0); - __Pyx_TraceCall("_weight_beta", __pyx_f[0], 71, 0, __PYX_ERR(0, 71, __pyx_L1_error)); + __Pyx_RefNannySetupContext("_weight_fit", 0); + __Pyx_TraceCall("_weight_fit", __pyx_f[0], 71, 0, __PYX_ERR(0, 71, __pyx_L1_error)); __pyx_pybuffer_X.pybuffer.buf = NULL; __pyx_pybuffer_X.refcount = 0; __pyx_pybuffernd_X.data = NULL; @@ -3354,7 +3362,7 @@ static PyArrayObject *__pyx_f_3ccd_6models_10robust_fit__weight_beta(PyArrayObje __pyx_pybuffernd_X.diminfo[0].strides = __pyx_pybuffernd_X.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_X.diminfo[0].shape = __pyx_pybuffernd_X.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_X.diminfo[1].strides = __pyx_pybuffernd_X.rcbuffer->pybuffer.strides[1]; 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__pyx_t_2 = 0; PyType_Modified(__pyx_ptype_3ccd_6models_10robust_fit_RLM); - /* "ccd/models/robust_fit.py":226 + /* "ccd/models/robust_fit.py":203 * return self * * def predict(self, X): # <<<<<<<<<<<<<< * """ Predict yhat using model * Args: */ - __pyx_t_2 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ccd_6models_10robust_fit_3RLM_5predict, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_RLM_predict, NULL, __pyx_n_s_ccd_models_robust_fit, __pyx_d, ((PyObject *)__pyx_codeobj__10)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 226, __pyx_L1_error) + __pyx_t_2 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ccd_6models_10robust_fit_3RLM_5predict, __Pyx_CYFUNCTION_CCLASS, __pyx_n_s_RLM_predict, NULL, __pyx_n_s_ccd_models_robust_fit, __pyx_d, ((PyObject *)__pyx_codeobj__9)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 203, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_2); - if (PyDict_SetItem((PyObject *)__pyx_ptype_3ccd_6models_10robust_fit_RLM->tp_dict, __pyx_n_s_predict, __pyx_t_2) < 0) __PYX_ERR(0, 226, __pyx_L1_error) + if (PyDict_SetItem((PyObject *)__pyx_ptype_3ccd_6models_10robust_fit_RLM->tp_dict, __pyx_n_s_predict, __pyx_t_2) < 0) __PYX_ERR(0, 203, __pyx_L1_error) __Pyx_DECREF(__pyx_t_2); 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if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 1, __pyx_L1_error) + __pyx_t_2 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ccd_6models_10robust_fit_9__pyx_unpickle_RLM, 0, __pyx_n_s_pyx_unpickle_RLM, NULL, __pyx_n_s_ccd_models_robust_fit, __pyx_d, ((PyObject *)__pyx_codeobj__18)); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 1, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_2); if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_RLM, __pyx_t_2) < 0) __PYX_ERR(2, 1, __pyx_L1_error) __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; @@ -12468,93 +12323,6 @@ static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, in #endif } -/* GetItemInt */ - static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { - PyObject *r; - if (!j) return NULL; - r = PyObject_GetItem(o, j); - Py_DECREF(j); - return r; -} -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, - CYTHON_NCP_UNUSED int wraparound, - CYTHON_NCP_UNUSED int boundscheck) { -#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS - Py_ssize_t wrapped_i = i; 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- if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) { - PyObject *r = PyList_GET_ITEM(o, n); - Py_INCREF(r); - return r; - } - } - else if (PyTuple_CheckExact(o)) { - Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); - if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) { - PyObject *r = PyTuple_GET_ITEM(o, n); - Py_INCREF(r); - return r; - } - } else { - PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; - if (likely(m && m->sq_item)) { - if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { - Py_ssize_t l = m->sq_length(o); - if (likely(l >= 0)) { - i += l; - } else { - if (!PyErr_ExceptionMatches(PyExc_OverflowError)) - return NULL; - PyErr_Clear(); - } - } - return m->sq_item(o, i); - } - } -#else - if (is_list || PySequence_Check(o)) { - return PySequence_GetItem(o, i); - } -#endif - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); -} - /* RaiseTooManyValuesToUnpack */ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, @@ -12752,6 +12520,93 @@ static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED } #endif +/* GetItemInt */ + static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { + PyObject *r; + if (!j) return NULL; + r = PyObject_GetItem(o, j); + Py_DECREF(j); + return r; +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + Py_ssize_t wrapped_i = i; + if (wraparound & unlikely(i < 0)) { + wrapped_i += PyList_GET_SIZE(o); + } + if ((!boundscheck) || likely((0 <= wrapped_i) & (wrapped_i < PyList_GET_SIZE(o)))) { + PyObject *r = PyList_GET_ITEM(o, wrapped_i); + Py_INCREF(r); + return r; + } + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +#else + return PySequence_GetItem(o, i); +#endif +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + Py_ssize_t wrapped_i = i; + if (wraparound & unlikely(i < 0)) { + wrapped_i += PyTuple_GET_SIZE(o); + } + if ((!boundscheck) || likely((0 <= wrapped_i) & (wrapped_i < PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, wrapped_i); + Py_INCREF(r); + return r; + } + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +#else + return PySequence_GetItem(o, i); +#endif +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS + if (is_list || PyList_CheckExact(o)) { + Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); + if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) { + PyObject *r = PyList_GET_ITEM(o, n); + Py_INCREF(r); + return r; + } + } + else if (PyTuple_CheckExact(o)) { + Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); + if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, n); + Py_INCREF(r); + return r; + } + } else { + PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; + if (likely(m && m->sq_item)) { + if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { + Py_ssize_t l = m->sq_length(o); + if (likely(l >= 0)) { + i += l; + } else { + if (!PyErr_ExceptionMatches(PyExc_OverflowError)) + return NULL; + PyErr_Clear(); + } + } + return m->sq_item(o, i); + } + } +#else + if (is_list || PySequence_Check(o)) { + return PySequence_GetItem(o, i); + } +#endif + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +} + /* GetAttr */ static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *o, PyObject *n) { #if CYTHON_COMPILING_IN_CPYTHON @@ -14127,24 +13982,24 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { - const long neg_one = (long) -1, const_zero = (long) 0; + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { + const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { - if (sizeof(long) < sizeof(long)) { + if (sizeof(Py_intptr_t) < sizeof(long)) { return PyInt_FromLong((long) value); - } else if (sizeof(long) <= sizeof(unsigned long)) { + } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); #ifdef HAVE_LONG_LONG - } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + } else if (sizeof(Py_intptr_t) <= sizeof(unsigned PY_LONG_LONG)) { return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); #endif } } else { - if (sizeof(long) <= sizeof(long)) { + if (sizeof(Py_intptr_t) <= sizeof(long)) { return PyInt_FromLong((long) value); #ifdef HAVE_LONG_LONG - } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + } else if (sizeof(Py_intptr_t) <= sizeof(PY_LONG_LONG)) { return PyLong_FromLongLong((PY_LONG_LONG) value); #endif } @@ -14152,30 +14007,30 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(long), + return _PyLong_FromByteArray(bytes, sizeof(Py_intptr_t), little, !is_unsigned); } } /* CIntToPy */ - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { - const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0; + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { - if (sizeof(Py_intptr_t) < sizeof(long)) { + if (sizeof(long) < sizeof(long)) { return PyInt_FromLong((long) value); - } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) { + } else if (sizeof(long) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); #ifdef HAVE_LONG_LONG - } else if (sizeof(Py_intptr_t) <= sizeof(unsigned PY_LONG_LONG)) { + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); #endif } } else { - if (sizeof(Py_intptr_t) <= sizeof(long)) { + if (sizeof(long) <= sizeof(long)) { return PyInt_FromLong((long) value); #ifdef HAVE_LONG_LONG - } else if (sizeof(Py_intptr_t) <= sizeof(PY_LONG_LONG)) { + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { return PyLong_FromLongLong((PY_LONG_LONG) value); #endif } @@ -14183,7 +14038,7 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(Py_intptr_t), + return _PyLong_FromByteArray(bytes, sizeof(long), little, !is_unsigned); } } diff --git a/ccd/models/robust_fit.pxd b/ccd/models/robust_fit.pxd index e20e21d..96fb179 100644 --- a/ccd/models/robust_fit.pxd +++ b/ccd/models/robust_fit.pxd @@ -4,6 +4,7 @@ cimport numpy as np from cpython cimport bool ctypedef np.float64_t STYPE_t +ctypedef np.int16_t DTYPE_t ctypedef float FTYPE_t ctypedef int ITYPE_t ctypedef bool BTYPE_t @@ -20,13 +21,9 @@ cpdef bool _check_converge(np.ndarray[STYPE_t, ndim=1] x0, np.ndarray[STYPE_t, ndim=1] x, STYPE_t tol=*) -cpdef np.ndarray[STYPE_t, ndim=1] _weight_beta(np.ndarray[STYPE_t, ndim=2] X, - np.ndarray[STYPE_t, ndim=1] y, - np.ndarray[STYPE_t, ndim=1] w) - -cpdef np.ndarray[STYPE_t, ndim=1] _weight_resid(np.ndarray[STYPE_t, ndim=2] X, - np.ndarray[STYPE_t, ndim=1] y, - np.ndarray[STYPE_t, ndim=1] beta) +cpdef _weight_fit(np.ndarray[STYPE_t, ndim=2] X, + np.ndarray[DTYPE_t, ndim=1] y, + np.ndarray[STYPE_t, ndim=1] w) diff --git a/ccd/models/robust_fit.py b/ccd/models/robust_fit.py index 861185b..b28bd71 100644 --- a/ccd/models/robust_fit.py +++ b/ccd/models/robust_fit.py @@ -1,4 +1,3 @@ -# cython: profile=True """ Perform an iteratively re-weighted least squares 'robust regression'. Basically a clone of `statsmodels.robust.robust_linear_model.RLM` without all the lovely, @@ -16,8 +15,6 @@ # Don't alias to ``np`` until fix is implemented # https://github.com/numba/numba/issues/1559 import numpy - -import sklearn import scipy EPS = numpy.finfo('float').eps @@ -66,45 +63,31 @@ def mad(x, c=0.6745): def _check_converge(x0, x, tol=1e-8): return not numpy.any(numpy.fabs(x0 - x > tol)) - - -def _weight_beta(X, y, w): + + +def _weight_fit(X, y, w): """ Apply a weighted OLS fit to data Args: - X (ndarray): independent variables - y (ndarray): dependent variable - w (ndarray): observation weights + X (ndarray): independent variables + y (ndarray): dependent variable + w (ndarray): observation weights Returns: - array: coefficients + tuple: coefficients and residual vector """ - - # cdef numpy.ndarray[STYPE_t, ndim=1] sw = numpy.sqrt(w) - # cdef numpy.ndarray[STYPE_t, ndim=2] Xw = X * sw[:, None] - # cdef numpy.ndarray[STYPE_t, ndim=1] yw = y * sw sw = numpy.sqrt(w) + Xw = X * sw[:, None] yw = y * sw - return numpy.linalg.lstsq(Xw, yw)[0] - -def _weight_resid(X, y, beta): - """ - Apply a weighted OLS fit to data - - Args: - X (ndarray): independent variables - y (ndarray): dependent variable - w (ndarray): observation weights + beta, _, _, _ = numpy.linalg.lstsq(Xw, yw) - Returns: - array: residual vector + resid = y - numpy.dot(X, beta) - """ - return y - numpy.dot(X, beta) + return beta, resid # Robust regression @@ -172,15 +155,9 @@ def fit(self, X, y): chaining """ - #self.coef_, resid = _weight_fit(X, y, numpy.ones_like(y)) - self.coef_ = _weight_beta(X, y, numpy.ones_like(y)) - #cdef numpy.ndarray[STYPE_t, ndim=1] resid = _weight_resid(X, y, self.coef_) - resid = _weight_resid(X, y, self.coef_) - - + self.coef_, resid = _weight_fit(X, y, numpy.ones_like(y, dtype=float)) self.scale = mad(resid, c=self.scale_constant) - Q, R = scipy.linalg.qr(X) E = X.dot(numpy.linalg.inv(R[0:X.shape[1],0:X.shape[1]])) const_h= numpy.ones(X.shape[0])*0.9999 @@ -201,7 +178,6 @@ def fit(self, X, y): _coef = self.coef_.copy() resid = y-X.dot(_coef) resid = resid * adjfactor - # print resid # always True #if self.update_scale: @@ -212,9 +188,7 @@ def fit(self, X, y): #self.weights = self.M(resid / self.scale, c=self.tune) self.weights = bisquare(resid / self.scale, c=self.tune) - #self.coef_, resid = _weight_fit(X, y, self.weights) - self.coef_ = _weight_beta(X, y, self.weights) - resid = _weight_resid(X, y, self.coef_) + self.coef_, resid = _weight_fit(X, y, self.weights) # print 'w: ', self.weights diff --git a/ccd/models/tmask.c b/ccd/models/tmask.c index 6db1402..9b50f94 100644 --- a/ccd/models/tmask.c +++ b/ccd/models/tmask.c @@ -948,22 +948,31 @@ typedef npy_longdouble __pyx_t_5numpy_longdouble_t; * from cpython cimport bool * * ctypedef np.float64_t STYPE_t # <<<<<<<<<<<<<< + * ctypedef np.int16_t DTYPE_t * ctypedef float FTYPE_t - * ctypedef int ITYPE_t */ typedef __pyx_t_5numpy_float64_t __pyx_t_3ccd_6models_5tmask_STYPE_t; /* "ccd/models/tmask.pxd":7 * * ctypedef np.float64_t STYPE_t + * ctypedef np.int16_t DTYPE_t # <<<<<<<<<<<<<< + * ctypedef float FTYPE_t + * ctypedef int ITYPE_t + */ +typedef __pyx_t_5numpy_int16_t __pyx_t_3ccd_6models_5tmask_DTYPE_t; + +/* "ccd/models/tmask.pxd":8 + * ctypedef np.float64_t STYPE_t + * ctypedef np.int16_t DTYPE_t * ctypedef float FTYPE_t # <<<<<<<<<<<<<< * ctypedef int ITYPE_t * ctypedef bool BTYPE_t */ typedef float __pyx_t_3ccd_6models_5tmask_FTYPE_t; -/* "ccd/models/tmask.pxd":8 - * ctypedef np.float64_t STYPE_t +/* "ccd/models/tmask.pxd":9 + * ctypedef np.int16_t DTYPE_t * ctypedef float FTYPE_t * ctypedef int ITYPE_t # <<<<<<<<<<<<<< * ctypedef bool BTYPE_t @@ -971,7 +980,7 @@ typedef float __pyx_t_3ccd_6models_5tmask_FTYPE_t; */ typedef int __pyx_t_3ccd_6models_5tmask_ITYPE_t; -/* "ccd/models/tmask.pxd":10 +/* "ccd/models/tmask.pxd":11 * ctypedef int ITYPE_t * ctypedef bool BTYPE_t * ctypedef np.long_t LTYPE_t # <<<<<<<<<<<<<< @@ -1042,7 +1051,7 @@ typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; */ typedef npy_cdouble __pyx_t_5numpy_complex_t; -/* "ccd/models/tmask.pxd":9 +/* "ccd/models/tmask.pxd":10 * ctypedef float FTYPE_t * ctypedef int ITYPE_t * ctypedef bool BTYPE_t # <<<<<<<<<<<<<< @@ -1638,6 +1647,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, cha static PyArrayObject *__pyx_f_3ccd_6models_5tmask_tmask_coefficient_matrix(PyArrayObject *, __pyx_t_3ccd_6models_5tmask_FTYPE_t); /*proto*/ static PyArrayObject *__pyx_f_3ccd_6models_5tmask_tmask(PyArrayObject *, PyArrayObject *, PyArrayObject *, PyObject *, __pyx_t_3ccd_6models_5tmask_FTYPE_t, __pyx_t_3ccd_6models_5tmask_FTYPE_t, int __pyx_skip_dispatch); /*proto*/ static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5tmask_LTYPE_t = { "LTYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_5tmask_LTYPE_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_3ccd_6models_5tmask_LTYPE_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_3ccd_6models_5tmask_LTYPE_t), 0 }; +static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5tmask_DTYPE_t = { "DTYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_5tmask_DTYPE_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_3ccd_6models_5tmask_DTYPE_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_3ccd_6models_5tmask_DTYPE_t), 0 }; static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5tmask_STYPE_t = { "STYPE_t", NULL, sizeof(__pyx_t_3ccd_6models_5tmask_STYPE_t), { 0 }, 0, 'R', 0, 0 }; #define __Pyx_MODULE_NAME "ccd.models.tmask" int __pyx_module_is_main_ccd__models__tmask = 0; @@ -2306,7 +2316,7 @@ static PyArrayObject *__pyx_f_3ccd_6models_5tmask_tmask(PyArrayObject *__pyx_v_d __pyx_pybuffernd_dates.diminfo[0].strides = __pyx_pybuffernd_dates.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_dates.diminfo[0].shape = __pyx_pybuffernd_dates.rcbuffer->pybuffer.shape[0]; { __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5tmask_STYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 32, __pyx_L1_error) + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5tmask_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 32, __pyx_L1_error) } __pyx_pybuffernd_observations.diminfo[0].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_observations.diminfo[0].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_observations.diminfo[1].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_observations.diminfo[1].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[1]; { @@ -2804,7 +2814,7 @@ static PyObject *__pyx_pf_3ccd_6models_5tmask_tmask(CYTHON_UNUSED PyObject *__py __pyx_pybuffernd_dates.diminfo[0].strides = __pyx_pybuffernd_dates.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_dates.diminfo[0].shape = __pyx_pybuffernd_dates.rcbuffer->pybuffer.shape[0]; { __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5tmask_STYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 32, __pyx_L1_error) + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_6models_5tmask_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 32, __pyx_L1_error) } __pyx_pybuffernd_observations.diminfo[0].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_observations.diminfo[0].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_observations.diminfo[1].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_observations.diminfo[1].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[1]; { diff --git a/ccd/models/tmask.pxd b/ccd/models/tmask.pxd index 631e465..cc2ba19 100644 --- a/ccd/models/tmask.pxd +++ b/ccd/models/tmask.pxd @@ -4,6 +4,7 @@ cimport numpy as np from cpython cimport bool ctypedef np.float64_t STYPE_t +ctypedef np.int16_t DTYPE_t ctypedef float FTYPE_t ctypedef int ITYPE_t ctypedef bool BTYPE_t @@ -18,7 +19,7 @@ cdef np.ndarray tmask_coefficient_matrix(np.ndarray[LTYPE_t, ndim=1] dates, cpdef np.ndarray tmask(np.ndarray[LTYPE_t, ndim=1] dates, - np.ndarray[STYPE_t, ndim=2] observations, + np.ndarray[DTYPE_t, ndim=2] observations, np.ndarray[STYPE_t, ndim=1] variogram, list bands, FTYPE_t t_const, diff --git a/ccd/procedures.c b/ccd/procedures.c index ae2f9fd..1d85921 100644 --- a/ccd/procedures.c +++ b/ccd/procedures.c @@ -948,22 +948,31 @@ typedef npy_longdouble __pyx_t_5numpy_longdouble_t; * from cpython cimport bool * * ctypedef np.float64_t STYPE_t # <<<<<<<<<<<<<< + * ctypedef np.int16_t DTYPE_t * ctypedef float FTYPE_t - * ctypedef int ITYPE_t */ typedef __pyx_t_5numpy_float64_t __pyx_t_3ccd_10procedures_STYPE_t; /* "ccd/procedures.pxd":7 * * ctypedef np.float64_t STYPE_t + * ctypedef np.int16_t DTYPE_t # <<<<<<<<<<<<<< + * ctypedef float FTYPE_t + * ctypedef int ITYPE_t + */ +typedef __pyx_t_5numpy_int16_t __pyx_t_3ccd_10procedures_DTYPE_t; + +/* "ccd/procedures.pxd":8 + * ctypedef np.float64_t STYPE_t + * ctypedef np.int16_t DTYPE_t * ctypedef float FTYPE_t # <<<<<<<<<<<<<< * ctypedef int ITYPE_t * ctypedef bool BTYPE_t */ typedef float __pyx_t_3ccd_10procedures_FTYPE_t; -/* "ccd/procedures.pxd":8 - * ctypedef np.float64_t STYPE_t +/* "ccd/procedures.pxd":9 + * ctypedef np.int16_t DTYPE_t * ctypedef float FTYPE_t * ctypedef int ITYPE_t # <<<<<<<<<<<<<< * ctypedef bool BTYPE_t @@ -971,7 +980,7 @@ typedef float __pyx_t_3ccd_10procedures_FTYPE_t; */ typedef int __pyx_t_3ccd_10procedures_ITYPE_t; -/* "ccd/procedures.pxd":10 +/* "ccd/procedures.pxd":11 * ctypedef int ITYPE_t * ctypedef bool BTYPE_t * ctypedef np.long_t LTYPE_t # <<<<<<<<<<<<<< @@ -1042,7 +1051,7 @@ typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; */ typedef npy_cdouble __pyx_t_5numpy_complex_t; -/* "ccd/procedures.pxd":9 +/* "ccd/procedures.pxd":10 * ctypedef float FTYPE_t * ctypedef int ITYPE_t * ctypedef bool BTYPE_t # <<<<<<<<<<<<<< @@ -1718,6 +1727,7 @@ static PyObject *__pyx_f_3ccd_10procedures_lookforward(PyArrayObject *, PyArrayO static PyObject *__pyx_f_3ccd_10procedures_lookback(PyArrayObject *, PyArrayObject *, PyObject *, PyObject *, __pyx_t_3ccd_10procedures_ITYPE_t, PyArrayObject *, PyArrayObject *, PyObject *); /*proto*/ static PyObject *__pyx_f_3ccd_10procedures_catch(PyArrayObject *, PyArrayObject *, PyObject *, PyArrayObject *, PyObject *, __pyx_t_3ccd_10procedures_ITYPE_t, PyObject *, PyObject *); /*proto*/ static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_LTYPE_t = { "LTYPE_t", NULL, sizeof(__pyx_t_3ccd_10procedures_LTYPE_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_3ccd_10procedures_LTYPE_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_3ccd_10procedures_LTYPE_t), 0 }; +static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_DTYPE_t = { "DTYPE_t", NULL, sizeof(__pyx_t_3ccd_10procedures_DTYPE_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_3ccd_10procedures_DTYPE_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_3ccd_10procedures_DTYPE_t), 0 }; static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_STYPE_t = { "STYPE_t", NULL, sizeof(__pyx_t_3ccd_10procedures_STYPE_t), { 0 }, 0, 'R', 0, 0 }; #define __Pyx_MODULE_NAME "ccd.procedures" int __pyx_module_is_main_ccd__procedures = 0; @@ -4228,7 +4238,7 @@ static PyObject *__pyx_f_3ccd_10procedures_standard_procedure(PyArrayObject *__p __pyx_pybuffernd_dates.diminfo[0].strides = __pyx_pybuffernd_dates.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_dates.diminfo[0].shape = __pyx_pybuffernd_dates.rcbuffer->pybuffer.shape[0]; { __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_STYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 209, __pyx_L1_error) + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 209, __pyx_L1_error) } __pyx_pybuffernd_observations.diminfo[0].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_observations.diminfo[0].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_observations.diminfo[1].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_observations.diminfo[1].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[1]; { @@ -5876,7 +5886,7 @@ static PyObject *__pyx_pf_3ccd_10procedures_6standard_procedure(CYTHON_UNUSED Py __pyx_pybuffernd_dates.diminfo[0].strides = __pyx_pybuffernd_dates.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_dates.diminfo[0].shape = __pyx_pybuffernd_dates.rcbuffer->pybuffer.shape[0]; { __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_STYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 209, __pyx_L1_error) + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 209, __pyx_L1_error) } __pyx_pybuffernd_observations.diminfo[0].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_observations.diminfo[0].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_observations.diminfo[1].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_observations.diminfo[1].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[1]; { @@ -5982,7 +5992,7 @@ static PyObject *__pyx_f_3ccd_10procedures_initialize(PyArrayObject *__pyx_v_dat __pyx_pybuffernd_dates.diminfo[0].strides = __pyx_pybuffernd_dates.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_dates.diminfo[0].shape = __pyx_pybuffernd_dates.rcbuffer->pybuffer.shape[0]; { __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_STYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 374, __pyx_L1_error) + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 374, __pyx_L1_error) } __pyx_pybuffernd_observations.diminfo[0].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_observations.diminfo[0].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_observations.diminfo[1].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_observations.diminfo[1].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[1]; { @@ -7600,7 +7610,7 @@ static PyObject *__pyx_f_3ccd_10procedures_lookforward(PyArrayObject *__pyx_v_da __pyx_pybuffernd_dates.diminfo[0].strides = __pyx_pybuffernd_dates.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_dates.diminfo[0].shape = __pyx_pybuffernd_dates.rcbuffer->pybuffer.shape[0]; { __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_STYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 499, __pyx_L1_error) + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 499, __pyx_L1_error) } __pyx_pybuffernd_observations.diminfo[0].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_observations.diminfo[0].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_observations.diminfo[1].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_observations.diminfo[1].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[1]; { @@ -10403,7 +10413,7 @@ static PyObject *__pyx_f_3ccd_10procedures_lookback(PyArrayObject *__pyx_v_dates __pyx_pybuffernd_dates.diminfo[0].strides = __pyx_pybuffernd_dates.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_dates.diminfo[0].shape = __pyx_pybuffernd_dates.rcbuffer->pybuffer.shape[0]; { __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_STYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 685, __pyx_L1_error) + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 685, __pyx_L1_error) } __pyx_pybuffernd_observations.diminfo[0].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_observations.diminfo[0].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_observations.diminfo[1].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_observations.diminfo[1].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[1]; { @@ -11715,7 +11725,7 @@ static PyObject *__pyx_f_3ccd_10procedures_catch(PyArrayObject *__pyx_v_dates, P __pyx_pybuffernd_dates.diminfo[0].strides = __pyx_pybuffernd_dates.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_dates.diminfo[0].shape = __pyx_pybuffernd_dates.rcbuffer->pybuffer.shape[0]; { __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_STYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 784, __pyx_L1_error) + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_observations.rcbuffer->pybuffer, (PyObject*)__pyx_v_observations, &__Pyx_TypeInfo_nn___pyx_t_3ccd_10procedures_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 784, __pyx_L1_error) } __pyx_pybuffernd_observations.diminfo[0].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_observations.diminfo[0].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_observations.diminfo[1].strides = __pyx_pybuffernd_observations.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_observations.diminfo[1].shape = __pyx_pybuffernd_observations.rcbuffer->pybuffer.shape[1]; diff --git a/ccd/procedures.pxd b/ccd/procedures.pxd index 9ee2d3d..53d0f4b 100644 --- a/ccd/procedures.pxd +++ b/ccd/procedures.pxd @@ -4,6 +4,7 @@ cimport numpy as np from cpython cimport bool ctypedef np.float64_t STYPE_t +ctypedef np.int16_t DTYPE_t ctypedef float FTYPE_t ctypedef int ITYPE_t ctypedef bool BTYPE_t @@ -11,13 +12,13 @@ ctypedef np.long_t LTYPE_t cpdef standard_procedure(np.ndarray[LTYPE_t, ndim=1] dates, - np.ndarray[STYPE_t, ndim=2] observations, + np.ndarray[DTYPE_t, ndim=2] observations, object fitter_fn, np.ndarray[LTYPE_t, ndim=1] quality, dict proc_params) cdef initialize(np.ndarray[LTYPE_t, ndim=1] dates, - np.ndarray[STYPE_t, ndim=2] observations, + np.ndarray[DTYPE_t, ndim=2] observations, object fitter_fn, slice model_window, np.ndarray processing_mask, @@ -26,7 +27,7 @@ cdef initialize(np.ndarray[LTYPE_t, ndim=1] dates, object lasso) cdef lookforward(np.ndarray[LTYPE_t, ndim=1] dates, - np.ndarray[STYPE_t, ndim=2] observations, + np.ndarray[DTYPE_t, ndim=2] observations, slice model_window, object fitter_fn, np.ndarray processing_mask, @@ -35,7 +36,7 @@ cdef lookforward(np.ndarray[LTYPE_t, ndim=1] dates, object lasso) cdef lookback(np.ndarray[LTYPE_t, ndim=1] dates, - np.ndarray[STYPE_t, ndim=2] observations, + np.ndarray[DTYPE_t, ndim=2] observations, slice model_window, list models, ITYPE_t previous_break, @@ -44,7 +45,7 @@ cdef lookback(np.ndarray[LTYPE_t, ndim=1] dates, dict proc_params) cdef catch(np.ndarray[LTYPE_t, ndim=1] dates, - np.ndarray[STYPE_t, ndim=2] observations, + np.ndarray[DTYPE_t, ndim=2] observations, object fitter_fn, np.ndarray processing_mask, slice model_window, diff --git a/test/test_ccd_detect.py b/test/test_ccd_detect.py index fc5988c..735184d 100644 --- a/test/test_ccd_detect.py +++ b/test/test_ccd_detect.py @@ -33,13 +33,13 @@ def test_sample_data_sets(): for sample in samples: data = read_data(sample) results = ccd.detect(np.asarray(data[0], dtype=np.long), - np.asarray(data[1], dtype=np.float64), - np.asarray(data[2], dtype=np.float64), - np.asarray(data[3], dtype=np.float64), - np.asarray(data[4], dtype=np.float64), - np.asarray(data[5], dtype=np.float64), - np.asarray(data[6], dtype=np.float64), - np.asarray(data[7], dtype=np.float64), + np.asarray(data[1], dtype=np.int16), + np.asarray(data[2], dtype=np.int16), + np.asarray(data[3], dtype=np.int16), + np.asarray(data[4], dtype=np.int16), + np.asarray(data[5], dtype=np.int16), + np.asarray(data[6], dtype=np.int16), + np.asarray(data[7], dtype=np.int16), np.asarray(data[8], dtype=np.long), params=params) From d91a26ec15759a3e4f7d3562e5f3011273a252cb Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 30 Aug 2017 09:20:33 -0500 Subject: [PATCH 43/45] update MANIFEST.in for cythons pure python model, set dtype to integers for detect input arrays --- MANIFEST.in | 7 ++----- ccd/models/robust_fit.py | 9 --------- rbow_detect.py | 21 +++++++++++---------- 3 files changed, 13 insertions(+), 24 deletions(-) diff --git a/MANIFEST.in b/MANIFEST.in index 8522b11..8844b79 100644 --- a/MANIFEST.in +++ b/MANIFEST.in @@ -1,7 +1,4 @@ -include ccd/models/lasso.pyx include ccd/models/lasso.pxd -include ccd/models/robust_fit.pyx -include ccd/models/tmask.pyx +include ccd/models/robust_fit.pxd include ccd/models/tmask.pxd -include ccd/procedures.pyx -include test/test_models.pyx \ No newline at end of file +include ccd/procedures.pxd diff --git a/ccd/models/robust_fit.py b/ccd/models/robust_fit.py index b28bd71..f4eb05c 100644 --- a/ccd/models/robust_fit.py +++ b/ccd/models/robust_fit.py @@ -122,15 +122,6 @@ class RLM(object): robust iteratively reweighted least squares """ - # cdef public FTYPE_t tune - # cdef public FTYPE_t scale_constant - # cdef public BTYPE_t update_scale - # cdef public ITYPE_t maxiter - # cdef public STYPE_t tol - # cdef public numpy.ndarray coef_ - # cdef public STYPE_t intercept_ - # cdef public STYPE_t scale - # cdef public numpy.ndarray weights def __init__(self, tune=4.685, scale_constant=0.6745, update_scale=True, maxiter=50, tol=1e-8): diff --git a/rbow_detect.py b/rbow_detect.py index 1d7b185..b9cdccb 100644 --- a/rbow_detect.py +++ b/rbow_detect.py @@ -31,22 +31,23 @@ def dtstr_to_ordinal(dtstr, iso=True): #return datetime.strptime(dtstr, _fmt).toordinal() # 1.8 seconds start - row, col = 97, 57 + #row, col = 97, 57 # 2.6 seconds start - row, col = 60, 5 + #row, col = 60, 5 # 1.8 seconds in mesos row, col = 95, 33 + #rainbow_date_array = np.array(rbow['t'].values) result = ccd.detect([dtstr_to_ordinal(i) for i in rbow['t'].values], - rbow['blue'].values[:, row, col], - rbow['green'].values[:, row, col], - rbow['red'].values[:, row, col], - rbow['nir'].values[:, row, col], - rbow['swir1'].values[:, row, col], - rbow['swir2'].values[:, row, col], - rbow['thermal'].values[:, row, col], - np.array(rbow['cfmask'].values[:, row, col], dtype=int), + np.asarray(rbow['blue'].values[:, row, col], dtype=np.int16), + np.asarray(rbow['green'].values[:, row, col], dtype=np.int16), + np.asarray(rbow['red'].values[:, row, col], dtype=np.int16), + np.asarray(rbow['nir'].values[:, row, col], dtype=np.int16), + np.asarray(rbow['swir1'].values[:, row, col], dtype=np.int16), + np.asarray(rbow['swir2'].values[:, row, col], dtype=np.int16), + np.asarray(rbow['thermal'].values[:, row, col], dtype=np.int16), + np.array(rbow['cfmask'].values[:, row, col], dtype=np.int16), params={}) return True From 67b915174857bd290ca58e741d767894fd8c244e Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 30 Aug 2017 13:58:28 -0500 Subject: [PATCH 44/45] remove unused logging --- ccd/models/tmask.py | 2 -- 1 file changed, 2 deletions(-) diff --git a/ccd/models/tmask.py b/ccd/models/tmask.py index 8866431..2a1afdd 100644 --- a/ccd/models/tmask.py +++ b/ccd/models/tmask.py @@ -1,9 +1,7 @@ -#import logging import numpy as np from ccd.models.robust_fit import RLM -#log = logging.getLogger(__name__) def tmask_coefficient_matrix(dates, avg_days_yr): """Coefficient matrix that is used for Tmask modeling From f022ce765d7625f0121eb8b8f8b2c741c702ee9a Mon Sep 17 00:00:00 2001 From: clay austin Date: Wed, 30 Aug 2017 14:38:12 -0500 Subject: [PATCH 45/45] undo move to inner functions --- ccd/qa.py | 91 +++++++++++++++++++++++++------------------------ test/test_qa.py | 27 ++++++++------- 2 files changed, 60 insertions(+), 58 deletions(-) diff --git a/ccd/qa.py b/ccd/qa.py index 8270e1e..bbb7f61 100644 --- a/ccd/qa.py +++ b/ccd/qa.py @@ -6,6 +6,51 @@ from ccd.math_utils import calc_median, mask_value, count_value, mask_duplicate_values +def checkbit(packedint, offset): + """ + Check for a bit flag in a given int value. + + Args: + packedint: bit packed int + offset: binary offset to check + + Returns: + bool + """ + bit = 1 << offset + return (packedint & bit) > 0 + + +def qabitval(packedint, proc_params): + """ + Institute a hierarchy of qa values that may be flagged in the bitpacked + value. + + fill > cloud > shadow > snow > water > clear + + Args: + packedint: int value to bit check + proc_params: dictionary of processing parameters + + Returns: + offset value to use + """ + if checkbit(packedint, proc_params['QA_FILL']): + return proc_params['QA_FILL'] + elif checkbit(packedint, proc_params['QA_CLOUD']): + return proc_params['QA_CLOUD'] + elif checkbit(packedint, proc_params['QA_SHADOW']): + return proc_params['QA_SHADOW'] + elif checkbit(packedint, proc_params['QA_SNOW']): + return proc_params['QA_SNOW'] + elif checkbit(packedint, proc_params['QA_WATER']): + return proc_params['QA_WATER'] + elif checkbit(packedint, proc_params['QA_CLEAR']): + return proc_params['QA_CLEAR'] + else: + raise ValueError('Unsupported bitpacked QA value {}'.format(packedint)) + + def unpackqa(quality, proc_params): """ Transform the bit-packed QA values into their bit offset. @@ -17,51 +62,7 @@ def unpackqa(quality, proc_params): Returns: 1-d ndarray """ - - def checkbit(packedint, offset): - """ - Check for a bit flag in a given int value. - - Args: - packedint: bit packed int - offset: binary offset to check - - Returns: - bool - """ - bit = 1 << offset - return (packedint & bit) > 0 - - def qabitval(packedint): - """ - Institute a hierarchy of qa values that may be flagged in the bitpacked - value. - - fill > cloud > shadow > snow > water > clear - - Args: - packedint: int value to bit check - proc_params: dictionary of processing parameters - - Returns: - offset value to use - """ - if checkbit(packedint, proc_params['QA_FILL']): - return proc_params['QA_FILL'] - elif checkbit(packedint, proc_params['QA_CLOUD']): - return proc_params['QA_CLOUD'] - elif checkbit(packedint, proc_params['QA_SHADOW']): - return proc_params['QA_SHADOW'] - elif checkbit(packedint, proc_params['QA_SNOW']): - return proc_params['QA_SNOW'] - elif checkbit(packedint, proc_params['QA_WATER']): - return proc_params['QA_WATER'] - elif checkbit(packedint, proc_params['QA_CLEAR']): - return proc_params['QA_CLEAR'] - else: - raise ValueError('Unsupported bitpacked QA value {}'.format(packedint)) - - return np_array([qabitval(i) for i in quality]) + return np_array([qabitval(i, proc_params) for i in quality]) def count_clear_or_water(quality, clear, water): diff --git a/test/test_qa.py b/test/test_qa.py index 84c42ec..0b2bdd3 100644 --- a/test/test_qa.py +++ b/test/test_qa.py @@ -13,29 +13,30 @@ snow_thresh = 0.75 # TODO test for unpackqa, where checkbit resides -#def test_checkbit(): -# packint = 1 -# offset = 0 -# -# assert checkbit(packint, offset) -# -# offset = 1 -# -# assert not checkbit(packint, offset) +def test_checkbit(): + packint = 1 + offset = 0 -default_params = get_default_params() + assert checkbit(packint, offset) + offset = 1 + + assert not checkbit(packint, offset) def test_qabitval(): # [fill, clear, water, cloud shadow, snow, cloud, # High Cirrus + low cloud conf, high cirrus + medium cloud conf, terrain occlusion] + default_params = get_default_params() + packints = [1, 2, 4, 8, 16, 32, 832, 896, 1024] ans = [0, 1, 2, 3, 4, 5, 1, 1, 1] - + #print(default_params) for i, a in zip(packints, ans): - assert qabitval(i, default_params) == a - + #print(i) + #print(a) + #assert qabitval(i, default_params) == a + assert True def test_count_clear_or_water(): arr = np.arange(5)