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fix: preserve last_docs_commit pointer during index-only updates (Fixes #873) #1556

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Run time

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Job	Run time
Python 3.11 tests	13m 32s
Web UI lint + type check	59s
Python 3.12 tests	13m 43s
Python 3.13 tests	16m 21s
VS Code extension test	2m 12s
Integration tests	-1s
	46m 46s