NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(predict,phylofactor)
S3method(print,phylofactor)
S3method(print,phylofactor.summary)
S3method(summary,phylofactor)
export(BalanceContrast)
export(GAM)
export(HGTplot)
export(OTUtoTaxa)
export(PhyCA)
export(PhyloFactor)
export(PhyloRegression)
export(TaxaSplit)
export(VAR)
export(amalgamate)
export(bins)
export(clo)
export(crossVmap)
export(extractEdges)
export(find.unsplit.Grps)
export(gMean)
export(getFactoredEdges)
export(getFactoredEdgesPAR)
export(getLabelledGrp)
export(getNewGroups)
export(getObjective)
export(getPhyloGroups)
export(getSignal)
export(getStats)
export(gpf)
export(ilrInv)
export(ilrvec)
export(listTaxa)
export(mAggregation)
export(matrix.to.phyloframe)
export(pf.BINprojection)
export(pf.ILRprojection)
export(pf.crossValidateMap)
export(pf.getPhyloGroups)
export(pf.groupsTospecies)
export(pf.heatmap)
export(pf.plot)
export(pf.predict)
export(pf.summary)
export(pf.taxa)
export(pf.tidy)
export(pf.tree)
export(pglm)
export(phyca.tidy)
export(phyloFcluster)
export(phyloFrame)
export(phylobin)
export(phyloframe.to.matrix)
export(pvDeviance)
export(simHGT)
export(taxaTree)
export(twoSampleFactor)
export(uniqueTaxa)
export(updateBinList)
export(updateTreeList)
import(data.table)
import(ape)
import(magrittr)
import(Matrix)
useDynLib(phylofactor)
useDynLib(phylofactor,bifurcations)