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CONFIG.ts
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const config = {
// Customize the branding of the viewer by providing a logo and/or name (at least one of them)
branding:{
// Path to logo image (assumes logo is in /public directory)
logo_path: "/CZ-Biohub-SF-RGB-60x60.png",
// Organization name
name: "inTRACKtive"
},
// When opening the viewer, or refreshing the page, the viewer will revert to the following default dataset
data:{
// Default dataset URL (must be publically accessible)
default_dataset: "https://public.czbiohub.org/royerlab/zoo/Zebrafish/tracks_zebrafish_bundle.zarr/"
},
// Default settings for certain parameters
settings:{
// Maximum number of cells a user can select without getting a warning
max_num_selected_cells: 100,
// Choose colormap for the tracks
// options: viridis-inferno, magma-inferno, inferno-inferno, plasma-inferno, cividis-inferno [default]
colormap_tracks: "cividis-inferno",
// Choose colormap for coloring the cells, when the attribute is continuous or categorical
// options: HSL, viridis, plasma, inferno, magma, cividis
colormap_colorby_categorical: "HSL",
colormap_colorby_continuous: "plasma",
// Show default attributes in the left dropdown menu for coloring the cells
showDefaultAttributes: true,
// Point size (arbitrary units), if cell sizes not provided in zarr attributes
point_size: 0.1,
// Point color (not selected)
point_color: [0, 0.8, 0.8], //cyan
// Point color (when selected)
highlight_point_color: [0.9, 0, 0.9], //pink
// Point color (when selector hovers over)
preview_hightlight_point_color: [0.8, 0.8, 0], //yellow
},
permission:{
// Allow users to color cells by attributes
allowColorByAttribute: true
}
}
export default config