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Commit 2576bb9

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generate expected h5 filenames from db
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modules/VertRes/Pipelines/Import_iRODS_pacbio.pm

Lines changed: 8 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -265,7 +265,14 @@ sub get_files_requires {
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sub get_files_provides {
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my ( $self, $lane_path ) = @_;
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return $self->_bas_h5_filenames;
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my @output_files;
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for my $file ( @{ $self->{files} } ) {
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next unless ( $file =~ /\.bas\.h5$/ );
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my ( $filename, $dirs, $suffix ) = fileparse($file);
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push( @output_files, $filename );
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}
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return \@output_files;
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}
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sub get_files {

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