diff --git a/conf/base.config b/conf/base.config index 4030c5e..dfefc57 100644 --- a/conf/base.config +++ b/conf/base.config @@ -26,7 +26,7 @@ process { withName: "MINIMAP2_ALIGN_SE" { cpus = { check_max( 16 ) } memory = { check_max( 1.GB * ( reference.size() < 2e9 ? 60 : Math.ceil( ( reference.size() / 1e+9 ) * 20 ) * task.attempt )) } - time = { check_max( 1.h * ( reference.size() < 1e9 ? 15 : reference.size() < 10e9 ? 30 : 48)) } + time = { check_max( 22.h * task.attempt, 'time' ) } } // Process-specific resource requirements diff --git a/conf/test.config b/conf/test.config index db0d1a3..cb0859c 100644 --- a/conf/test.config +++ b/conf/test.config @@ -26,6 +26,6 @@ params { // Input data for full size test // Limit resources so that this can run on GitHub Actions - input = "${baseDir}/assets/test.yaml" + input = "${baseDir}/assets/test.yaml" steps = "btk,cpretext,merquryfk" }