From 94035239b334f2104f12ec795469fd88ddd305c6 Mon Sep 17 00:00:00 2001 From: Matthieu Muffato Date: Thu, 12 Dec 2024 16:50:51 +0000 Subject: [PATCH] Updated DOI --- CITATION.cff | 2 +- README.md | 4 ++-- lib/WorkflowMain.groovy | 2 +- nextflow.config | 2 +- 4 files changed, 5 insertions(+), 5 deletions(-) diff --git a/CITATION.cff b/CITATION.cff index 7b800b4..f2a8865 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -22,7 +22,7 @@ authors: affiliation: Wellcome Sanger Institute identifiers: - type: doi - value: 10.5281/zenodo.7155168 + value: 10.5281/zenodo.14358108 repository-code: "https://github.com/sanger-tol/sequencecomposition" license: MIT commit: TODO diff --git a/README.md b/README.md index 3711b94..cd9cbfc 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ [![GitHub Actions CI Status](https://github.com/sanger-tol/sequencecomposition/workflows/nf-core%20CI/badge.svg)](https://github.com/sanger-tol/sequencecomposition/actions?query=workflow%3A%22nf-core+CI%22) [![GitHub Actions Linting Status](https://github.com/sanger-tol/sequencecomposition/workflows/nf-core%20linting/badge.svg)](https://github.com/sanger-tol/sequencecomposition/actions?query=workflow%3A%22nf-core+linting%22) -[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.7155168-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.7155168) +[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.14358108-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.14358108) [![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A522.10.1-23aa62.svg)](https://www.nextflow.io/) [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=conda)](https://docs.conda.io/en/latest/) @@ -65,7 +65,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `# ## Citations -If you use sanger-tol/sequencecomposition for your analysis, please cite it using the following doi: [10.5281/zenodo.7155168](https://doi.org/10.5281/zenodo.7155168) +If you use sanger-tol/sequencecomposition for your analysis, please cite it using the following doi: [10.5281/zenodo.14358108](https://doi.org/10.5281/zenodo.14358108) An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file. diff --git a/lib/WorkflowMain.groovy b/lib/WorkflowMain.groovy index e72fa10..9a9d72b 100755 --- a/lib/WorkflowMain.groovy +++ b/lib/WorkflowMain.groovy @@ -12,7 +12,7 @@ class WorkflowMain { public static String citation(workflow) { return "If you use ${workflow.manifest.name} for your analysis please cite:\n\n" + "* The pipeline\n" + - " https://doi.org/10.5281/zenodo.7155168\n\n" + + " https://doi.org/10.5281/zenodo.14358108\n\n" + "* The nf-core framework\n" + " https://doi.org/10.1038/s41587-020-0439-x\n\n" + "* Software dependencies\n" + diff --git a/nextflow.config b/nextflow.config index fe7519e..8ce8468 100644 --- a/nextflow.config +++ b/nextflow.config @@ -205,7 +205,7 @@ manifest { mainScript = 'main.nf' nextflowVersion = '!>=22.10.1' version = '1.1.0' - doi = '10.5281/zenodo.7155168' + doi = '10.5281/zenodo.14358108' } // Load modules.config for DSL2 module specific options