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ST0013 As a user I would like to see the IRods root collection path for my samples so that I can find my sequencing data. #9

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TWJW-SANGER opened this issue Jun 10, 2024 · 1 comment

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@TWJW-SANGER
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TWJW-SANGER commented Jun 10, 2024

As a user I would like to see the IRods root collection path for my samples so that I can find my sequencing data.

Acceptance Criteria

  • Add a new column to the Sample Tracking view in the database named "IRods Root Collection Paths"
  • Each row should contain the distinct concatenated strings from the table seq_product_irods_locations.irods_root_collection
  • Confluence page description of the report and view should be updated to include the new column
  • Sanity check: It is expected that if a sample has been sequenced there should be an entry in this column.

Additional Info
An example query that pulls back the IRods path is here.
https://ssg-confluence.internal.sanger.ac.uk/display/PSDPUB/How+to+query+for+all+sequencing+run+status+changes+for+a+given+study+after+a+given+time+point

@TWJW-SANGER TWJW-SANGER converted this from a draft issue Jun 10, 2024
@TWJW-SANGER TWJW-SANGER changed the title Placeholder to add folder location in iRods for sequence data in report As a user I would like to see the IRods root collection path for my samples so that I can find my sequencing data. Jun 10, 2024
@TWJW-SANGER TWJW-SANGER changed the title As a user I would like to see the IRods root collection path for my samples so that I can find my sequencing data. ST00013 As a user I would like to see the IRods root collection path for my samples so that I can find my sequencing data. Jun 10, 2024
@TWJW-SANGER TWJW-SANGER changed the title ST00013 As a user I would like to see the IRods root collection path for my samples so that I can find my sequencing data. ST0013 As a user I would like to see the IRods root collection path for my samples so that I can find my sequencing data. Jun 10, 2024
@khelwood khelwood moved this from In progress to In review in Sample Tracking Report Jun 17, 2024
@khelwood khelwood moved this from In review to UAT in Sample Tracking Report Jun 18, 2024
@TWJW-SANGER
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I think the Confluence page needs the IRods Root Collection Paths column adding.

@khelwood khelwood moved this from UAT to Ready To Deploy in Sample Tracking Report Jul 5, 2024
@khelwood khelwood moved this from Ready To Deploy to Done in Sample Tracking Report Jul 8, 2024
@khelwood khelwood moved this from Done to Ready To Deploy in Sample Tracking Report Jul 8, 2024
@khelwood khelwood moved this from Ready To Deploy to Done in Sample Tracking Report Jul 10, 2024
@khelwood khelwood moved this from Done to UAT in Sample Tracking Report Jul 10, 2024
@khelwood khelwood moved this from UAT to Done in Sample Tracking Report Jul 10, 2024
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