diff --git a/cran-comments.md b/cran-comments.md index fed512508..371508a27 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,34 +1,28 @@ -# Seurat v5.2.0 +# Seurat v5.2.1 +This update is a small patch release to address failing M1mac checks ahead of the deadline on 2025-01-28. ## Test environments -* local ubuntu 20.04 install, R 4.4.2 -* win-builder (oldrelease, release, devel) -* mac-builder (devel) - -We were unable to test on r-release on mac-builder because the portal seemed to point to the wrong version. +* macOS 14.6.1 (Apple M3, arm64, local install): R-release +* Ubuntu 22.04 (Docker container): R-release +* [win-builder](https://win-builder.r-project.org/): R-oldrelease, R-release, R-devel +* [macOS builder](https://mac.r-project.org/macbuilder/submit.html): R-release, R-devel ## R CMD check results +There were no ERRORs or WARNINGs but there was one NOTE. -There were no ERRORs or WARNINGs - -There was one NOTE - -❯ checking CRAN incoming feasibility ... [12s/61s] NOTE +``` +❯ checking CRAN incoming feasibility ... [15s/92s] NOTE Maintainer: ‘Rahul Satija ’ Suggests or Enhances not in mainstream repositories: BPCells, enrichR, presto Availability using Additional_repositories specification: BPCells yes https://bnprks.r-universe.dev - enrichR yes https://cran.r-universe.dev + enrichR yes https://satijalab.r-universe.dev presto yes https://satijalab.r-universe.dev +``` -BPCells, enrichR, and presto are hosted on R-universe and used conditionally in Seurat. - -## Downstream dependencies - -There are 3 packages that depend on Seurat: CACIMAR, scCustomize, and SCdeconR; this update does not impact their functionality. - -There are 34 packages that import Seurat: AnanseSeurat, APackOfTheClones, bbknnR, CAESAR.Suite, CAMML, DR.SC, DWLS, GeneNMF, ggsector, mixhvg, nebula, Platypus, PoweREST, PRECAST, ProFAST, rPanglaoDB, scAnnotate, scaper, sccca, scDiffCom, scGate, scGOclust, SCIntRuler, scMappR, scperturbR, scpoisson, SCRIP, scRNAstat, SignacX, SoupX, SpaCCI, SPECK, STREAK, and tidyseurat; this update does not impact their functionality. +`BPCells`, `enrichR`, and `presto` are hosted on R-universe and used conditionally in `Seurat`. -There are 27 packages that suggest Seurat: BisqueRNA, Canek, cellpypes, CIARA, ClustAssess, clustree, combiroc, conos, countland, CRMetrics, CytoSimplex, DIscBIO, dyngen, easybio, grandR, harmony, laminr, mxfda, RESET, rliger, SCORPIUS, SCpubr, scregclust, Signac, SuperCell, treefit, and VAM; this update does not impact their functionality. +## Reverse dependency check results +We checked 65 reverse dependencies, comparing `R CMD check` results across the CRAN and dev versions of this package, and saw no new problems.