You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
After segmentation with cellpose, I ran Xenium Ranger 3.0.1.1 xeniumranger import-segmentation --id=my_ID \ --xenium-bundle=$DIR/outs \ --nuclei=$DIR/outs/mask_nuclei.ome_cp_masks.tif \ --cells=$DIR/outs/mask_cells.ome_cp_masks.tif
When I try to read the output folder with spatialdata_io (0.1.7.dev5+g82ff327), spatialdata (0.2.7.dev7+gd746485) sdata = spatialdata_io.xenium(dir)
I get this error:
"ValueError: A linearring requires at least 4 coordinates."