From 2ca585680935ac17a74ca364920e1ae002cae97d Mon Sep 17 00:00:00 2001 From: Vincent Adam Date: Sat, 20 Apr 2024 22:57:38 +0200 Subject: [PATCH 01/12] first attempt --- .github/workflows/quality-check.yaml | 5 +- poetry.lock | 5927 +++++++++++++++++--------- pyproject.toml | 24 +- 3 files changed, 3897 insertions(+), 2059 deletions(-) diff --git a/.github/workflows/quality-check.yaml b/.github/workflows/quality-check.yaml index c2049273..4c72aa0d 100644 --- a/.github/workflows/quality-check.yaml +++ b/.github/workflows/quality-check.yaml @@ -25,9 +25,8 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - python-version: [ 3.7 ] - tensorflow: [ 2.2.1 ] - name: Python-${{ matrix.python-version }} tensorflow${{ matrix.tensorflow }} + python-version: [ "3.8.12" ] + name: Python-${{ matrix.python-version }} steps: #---------------------------------------------- # check-out repo and set-up python diff --git a/poetry.lock b/poetry.lock index 5cfb17d8..d80a8ad6 100644 --- a/poetry.lock +++ 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Note: Poetry will exclude files declared in .gitignore when creating the python package file. [tool.poetry.dependencies] -python = ">=3.7,<3.8" -importlib_metadata = "^1.6" # poetry requires this for python < 3.8 +python = ">=3.8,<3.12" +tensorflow = [ + { version = ">=2.4.0,<2.5.0", markers = "python_version >= '3.7' and python_version < '3.8'" }, + { version = ">=2.4.0,<2.7.0", markers = "python_version >= '3.8' and python_version < '3.9'" }, + { version = ">=2.5.0,<2.7.0", markers = "python_version >= '3.9' and python_version < '3.10'" }, + { version = ">=2.7.0,<2.9.0", markers = "python_version >= '3.10' and python_version < '3.11'" }, + { version = ">=2.8.0,<2.16.0", markers = "python_version >= '3.11' and python_version < '3.12'" } +] +importlib-metadata = ">=4.4,<5.0" gpflow = "^2.1" numpy = "^1.18.0" -tensorflow = ">2.2.0" tensorflow-probability = "0.11.0" -banded-matrices = "0.0.6" +# banded-matrices = "0.0.6" +banded-matrices = { git = "https://github.com/secondmind-labs/banded_matrices.git", branch = "va/update-bm" } # pip isn't smart enough to resolve these, so we need to include and pin these setuptools = "^41.0.0" google-auth = "^1.16.0" scipy = "^1.4.1" [tool.poetry.dev-dependencies] -mypy = "0.711" +black = "23.7.0" +mypy = [ + { version = ">=1.1.0,<1.3.0", markers = "python_version >= '3.7' and python_version < '3.9'" }, + { version = ">=1.1.0,<1.3.0", markers = "python_version >= '3.9' and python_version < '3.10'" }, + { version = ">=1.1.0,<1.3.0", markers = "python_version >= '3.10' and python_version < '3.11'" }, + { version = "1.8.0", markers = "python_version >= '3.11' and python_version < '3.12'" } +] pylint = "2.3.1" pytest = "^5.3.5" pytest-cov = "^2.8.1" @@ -29,7 +42,6 @@ pytest-mypy = "^0.6.1" pytest-pylint = "^0.17.0" taskipy = "^1.2.0" pytest-black = "^0.3.11" -black = "19.10b0" pytest-isort = "^1.0.0" jupytext = "^1.5.1" jupyter = "^1.0.0" From f2a05297dad93c5ff9506accbc65a9080c15e041 Mon Sep 17 00:00:00 2001 From: Vincent Adam Date: Sat, 20 Apr 2024 23:00:12 +0200 Subject: [PATCH 02/12] force recreate lock --- .github/workflows/quality-check.yaml | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/.github/workflows/quality-check.yaml b/.github/workflows/quality-check.yaml index 4c72aa0d..69547b9e 100644 --- a/.github/workflows/quality-check.yaml +++ b/.github/workflows/quality-check.yaml @@ -67,7 +67,10 @@ jobs: # install root project #---------------------------------------------- - name: Install library - run: poetry install --no-interaction + run: | + rm poetry.lock + poetry lock + poetry install --no-interaction #---------------------------------------------- # run test suite #---------------------------------------------- From 953f5cd699eb37821f78a2aba21126c2e764d242 Mon Sep 17 00:00:00 2001 From: Vincent Adam Date: Sat, 20 Apr 2024 23:01:44 +0200 Subject: [PATCH 03/12] force recreate lock v2 --- .github/workflows/quality-check.yaml | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/.github/workflows/quality-check.yaml b/.github/workflows/quality-check.yaml index 69547b9e..6bdac149 100644 --- a/.github/workflows/quality-check.yaml +++ b/.github/workflows/quality-check.yaml @@ -62,15 +62,15 @@ jobs: #---------------------------------------------- - name: Install dependencies if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' - run: poetry install --no-interaction --no-root + run: | + rm poetry.lock + poetry lock + poetry install --no-interaction --no-root #---------------------------------------------- # install root project #---------------------------------------------- - name: Install library - run: | - rm poetry.lock - poetry lock - poetry install --no-interaction + run: poetry install --no-interaction #---------------------------------------------- # run test suite #---------------------------------------------- From 684e7c3d99a894d638d382fe54cb8721ddc4f95a Mon Sep 17 00:00:00 2001 From: Vincent Adam Date: Mon, 22 Apr 2024 20:04:47 +0200 Subject: [PATCH 04/12] changing bm dependencies for testing purposes --- poetry.lock | 16 ++++++++-------- pyproject.toml | 8 ++++---- 2 files changed, 12 insertions(+), 12 deletions(-) diff --git a/poetry.lock b/poetry.lock index d80a8ad6..a09af969 100644 --- a/poetry.lock +++ b/poetry.lock @@ -300,10 +300,10 @@ files = [ [[package]] name = "banded-matrices" -version = "0.0.7" +version = "0.1.0" description = "Native (C++) implementation of Banded Matrices for TensorFlow" optional = false -python-versions = ">=3.8,<3.12" +python-versions = ">=3.7,<3.12" files = [] develop = false @@ -321,8 +321,8 @@ tensorflow = [ [package.source] type = "git" url = "https://github.com/secondmind-labs/banded_matrices.git" -reference = "va/update-bm" -resolved_reference = "a5f0860cf232b1e45d1275ba7ba1aec033de6df7" +reference = "master" +resolved_reference = "3a765fc052544e3be75c425a951c1c417f4d6150" [[package]] name = "beautifulsoup4" @@ -1927,13 +1927,13 @@ files = [ [[package]] name = "jupyterlab-server" -version = "2.26.0" +version = "2.27.0" description = "A set of server components for JupyterLab and JupyterLab like applications." optional = false python-versions = ">=3.8" files = [ - {file = "jupyterlab_server-2.26.0-py3-none-any.whl", hash = "sha256:54622cbd330526a385ee0c1fdccdff3a1e7219bf3e864a335284a1270a1973df"}, - {file = "jupyterlab_server-2.26.0.tar.gz", hash = "sha256:9b3ba91cf2837f7f124fca36d63f3ca80ace2bed4898a63dd47e6598c1ab006f"}, + {file = "jupyterlab_server-2.27.0-py3-none-any.whl", hash = "sha256:1dbf26210c2426bca6164c0df57da85ec711aeeed4480dee1cf66501f06292c3"}, + {file = "jupyterlab_server-2.27.0.tar.gz", hash = "sha256:b03382075545981dd0ab7a9e4ffff74b6ed2b424c92e32fcc1c0bd65dafcb56d"}, ] [package.dependencies] @@ -5246,4 +5246,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.8,<3.12" -content-hash = "6c4fc2bae5929d1be7819631c46b1ad7e1c4ae96176c9fb492a479295a7cfc48" +content-hash = 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rewriting of lock --- .github/workflows/quality-check.yaml | 2 -- 1 file changed, 2 deletions(-) diff --git a/.github/workflows/quality-check.yaml b/.github/workflows/quality-check.yaml index 6bdac149..35f11ac1 100644 --- a/.github/workflows/quality-check.yaml +++ b/.github/workflows/quality-check.yaml @@ -63,8 +63,6 @@ jobs: - name: Install dependencies if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' run: | - rm poetry.lock - poetry lock poetry install --no-interaction --no-root #---------------------------------------------- # install root project From f23434307b7d228105a5dc5cbb2e62fdb40fb5ab Mon Sep 17 00:00:00 2001 From: Vincent Adam Date: Mon, 22 Apr 2024 20:11:11 +0200 Subject: [PATCH 06/12] update poetry version --- .github/workflows/quality-check.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/quality-check.yaml b/.github/workflows/quality-check.yaml index 35f11ac1..a7909bc6 100644 --- 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lock-version = "2.0" python-versions = ">=3.8,<3.12" -content-hash = "7b12224463c63b5929517c7b893b114c44315e1219aec6ee35622fe577887730" +content-hash = "67074a9840ffe9ee9cd0ce0833078a855a8da4689d5401aa9af437287556f0f6" diff --git a/pyproject.toml b/pyproject.toml index 7cbd0615..c92bae52 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -28,7 +28,7 @@ google-auth = "^1.16.0" scipy = "^1.5.4" [tool.poetry.dev-dependencies] -black = "23.7.0" +black = "22.3.0" mypy = [ { version = ">=1.1.0,<1.3.0", markers = "python_version >= '3.7' and python_version < '3.9'" }, { version = ">=1.1.0,<1.3.0", markers = "python_version >= '3.9' and python_version < '3.10'" }, From b031fd2f6fbba2e4195548b33eb7fca4b49aa621 Mon Sep 17 00:00:00 2001 From: Vincent Adam Date: Mon, 22 Apr 2024 20:25:59 +0200 Subject: [PATCH 08/12] revert lock rewrite --- .github/workflows/quality-check.yaml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.github/workflows/quality-check.yaml b/.github/workflows/quality-check.yaml index a7909bc6..61019ea7 100644 --- a/.github/workflows/quality-check.yaml +++ b/.github/workflows/quality-check.yaml @@ -63,6 +63,8 @@ jobs: - name: Install dependencies if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' run: | + rm poetry.lock + poetry lock poetry install --no-interaction --no-root #---------------------------------------------- # install root project From f76fdb42cdb13491c3dc3a4b3ca76832c0900bfb Mon Sep 17 00:00:00 2001 From: Vincent Adam Date: Mon, 22 Apr 2024 20:32:58 +0200 Subject: [PATCH 09/12] remove lock --- .github/workflows/quality-check.yaml | 2 -- 1 file changed, 2 deletions(-) diff --git a/.github/workflows/quality-check.yaml b/.github/workflows/quality-check.yaml index 61019ea7..a7909bc6 100644 --- a/.github/workflows/quality-check.yaml +++ b/.github/workflows/quality-check.yaml @@ -63,8 +63,6 @@ jobs: - name: Install dependencies if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' run: | - rm poetry.lock - poetry lock poetry install --no-interaction --no-root #---------------------------------------------- # install root project From a97cb912a29525bebead562001a498078ac6ccac Mon Sep 17 00:00:00 2001 From: Vincent Adam Date: Mon, 22 Apr 2024 21:33:02 +0200 Subject: [PATCH 10/12] change poetry build --- poetry.lock | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/poetry.lock b/poetry.lock index a7d884f5..fe9a9e0c 100644 --- a/poetry.lock +++ b/poetry.lock @@ -5246,4 +5246,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.8,<3.12" -content-hash = "67074a9840ffe9ee9cd0ce0833078a855a8da4689d5401aa9af437287556f0f6" +content-hash = "d05fcea8a096a6aef37f06a14c09707fadd961d35cffc97759bd67e2f74d1076" diff --git a/pyproject.toml b/pyproject.toml index c92bae52..59ab6a4c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -10,7 +10,7 @@ packages = [{include = "markovflow"}] [tool.poetry.dependencies] python = ">=3.8,<3.12" tensorflow = [ - { version = ">=2.4.0,<2.5.0", markers = "python_version >= '3.7' and python_version < '3.8'" }, + { version = ">=2.4.0,<2.7.0", markers = "python_version >= '3.7' and python_version < '3.8'" }, { version = ">=2.4.0,<2.7.0", markers = "python_version >= '3.8' and python_version < '3.9'" }, { version = ">=2.5.0,<2.7.0", markers = "python_version >= '3.9' and python_version < '3.10'" }, { version = ">=2.7.0,<2.9.0", markers = "python_version >= '3.10' and python_version < '3.11'" }, From bf212af721a3808c4f004d315d2fd0edfe5adcc5 Mon Sep 17 00:00:00 2001 From: Vincent Adam Date: Mon, 22 Apr 2024 21:45:00 +0200 Subject: [PATCH 11/12] regenerate lock --- .github/workflows/quality-check.yaml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.github/workflows/quality-check.yaml b/.github/workflows/quality-check.yaml index a7909bc6..61019ea7 100644 --- a/.github/workflows/quality-check.yaml +++ b/.github/workflows/quality-check.yaml @@ -63,6 +63,8 @@ jobs: - name: Install dependencies if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' run: | + rm poetry.lock + poetry lock poetry install --no-interaction --no-root #---------------------------------------------- # install root project From df74c48e01d892e797f9074cfbf9f7454bd8956d Mon Sep 17 00:00:00 2001 From: Vincent Adam Date: Mon, 22 Apr 2024 21:57:39 +0200 Subject: [PATCH 12/12] testing verstion 1.8.2 --- .github/workflows/quality-check.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/quality-check.yaml b/.github/workflows/quality-check.yaml index 61019ea7..495261aa 100644 --- a/.github/workflows/quality-check.yaml +++ b/.github/workflows/quality-check.yaml @@ -43,7 +43,7 @@ jobs: - name: Install Poetry uses: snok/install-poetry@v1 with: - version: 1.1.12 + version: 1.8.2 virtualenvs-create: true virtualenvs-in-project: true installer-parallel: true